information on F16J13    (40449..42745)

Direction: +

Frame: 3

ORF

    39711..42784  (Met: 39726 39768 39951 40047 40059 40236 40392 40602 40737 40939 41038 41679 41697 41959 42256 42259 42265 42312 42531 42734 40920 40934 41185 41208 41222 41230 41337 41375 41431 41439 41570 41590 41649 41654 41668 41763 41831 42016 42078 42095 42145 42213 42227 42307 42384 42422 42511 42540 42545 42595 42642)
TLKLLMIIPLFQSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISY
LKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQE
IPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLR
FLDLSRTDIKELPSSISYLTALDELLFVDSRRNSPVVTNPNANSTELMPSESSKLEILGT
PADNEVVVGGTVEKTRGIERTPTILVKSREYLIPDDVVAVGGDIKGLRPPVLQLQPAMKL
SHIPRGSTWDFVTHFAPPETVAPPSSSSEAREEEVETEETGAMFIPLGDKETCSFTVNKG
DSSRTISNTSPIYASEGSFITCWQKGQLLGRGSLGSVYEGISA*LTG*MFVELKIRFLSC
KAILRKRVFLYAFGSCQPKCFMVDVYVKCRDGDFFAFKEVSLLDQGSQAHEWIQQVEGVR
YTWSITGIKF*LVTLCP*CWK*C*LITLATFFDFLQGIALLSQLQHQNIVRYRGTTKV*S
GFLFSVAADS*HNAFLLFAGRVEFVHFS*L*QGSLRKLYQRNQLGDSVVSLYTRQILDGL
KYLHDKGFIHRFD*KSLFL*VHVFPKLLISWVVYFFFI**KEH*VQMYWWTLMEQLNLQI
LDWLRFFSINNRCL*FSSTNLVHRLFPLLDTCGILL*NVPLANSVLELDGSRGYCFKILP
AVLICQYNDRQTYHTSKEMLYLKLLLKYVPAYIVIQA*SSKIPGYVSFRSLINLKLV*LF
LF*YSSYYNCEYVISDHR*DADVYHFDCTLGYTCTTVFLN*III*RLFLTRRIMMVMELQ
LIYGALGVLC*MLTGQIPYSDLEIVSLQDSQTFFI*VSKFPQLSPTI*VKVNEQSIWHSL
NLYFSTSDFVLHLQLF*FYFIFMGF**IKGHNLCKRAGYSLV*LERVSFRKYLIFYR*AR
DFILTCLKVNPEERPTAAELLNHPFVNMPLPSSGSGSVSSLLRG

GenBank annotation

    34974..42787    F16J13.90

BLASTX cluster

    40398..42745    cluster 12    65 hits for protein gene

BLASTN cluster

    42272..42731    cluster 4    1 hits for EST

GENSCAN

    34974..42784    gene model 7

    Suboptimal exon

        39897..40918    Intr    Phase: 0    Score: 0.263
        42234..42350    Intr    Phase: 0    Score: 0.122

Grail

    39768..40922    exon    Phase: 0    Score: 87
    41271..41333    exon    Phase: 0    Score: 42
    42234..42350    exon    Phase: 0    Score: 89

Exon-Intron boundary candidatates

Acceptor
39720 [0.001] (0) 39747 [0.88N/0.158] (0) 39850 [0.013] (1) 39900 [0.002] (0)
39921 [0.359] (0) 39964 [0.001] (1) 40002 [0.026] (0) 40006 [0.051] (1)
40195 [0.68N/0.567] (1) 40222 [0.002] (1) 40265 [0.001] (2) 40268 [0.699] (2)
40273 [0.012] (1) 40336 [0.69N/0.014] (1) 40343 [0.079] (2) 40426 [0.019] (1)
40438 [0.006] (1) 40450 [0.001] (1) 40468 [0.001] (1) 40566 [0.008] (0)
40672 [0.036] (1) 40696 [0.008] (1) 40703 [0.006] (2) 40788 [0.001] (0)
40840 [0.001] (1) 40863 [0.019] (0) 40866 [0.002] (0) 40962 [0.020] (0)
40971 [0.014] (0) 40979 [0.009] (2) 41064 [0.034] (0) 41089 [0.023] (1)
41110 [0.361] (1) 41119 [0.004] (1) 41225 [0.002] (2) 41271 [1.00N/0.988] (0)
41288 [0.002] (2) 41292 [0.013] (0) 41298 [0.005] (0) 41304 [0.002] (0)
41361 [0.004] (0) 41367 [0.042] (0) 41405 [0.93N/0.896] (2) 41448 [0.001] (0)
41563 [0.112] (1) 41593 [0.041] (1) 41596 [0.59N/0.755] (1) 41662 [0.011] (1)
41718 [0.003] (0) 41756 [0.006] (2) 41766 [0.002] (0) 41776 [0.001] (1)
41834 [0.86N/0.653] (2) 42013 [0.276] (1) 42053 [0.004] (2) 42098 [0.003] (2)
42105 [0.582] (0) 42135 [0.013] (0) 42144 [0.357] (0) 42151 [0.017] (1)
42184 [0.009] (1) 42234 [1.00N/0.539] (0) 42252 [0.005] (0) 42277 [0.009] (1)
42327 [0.002] (0) 42425 [0.002] (2) 42545 [0.010] (2) 42557 [0.520] (2)
42581 [1.00N/0.601] (2) 42588 [0.004] (0) 42645 [0.007] (0) 42759 [0.002] (0)
Donor
39849 [0.007] (1) 40050 [0.007] (1) 40249 [0.070] (2) 40407 [0.265] (1)
40425 [0.011] (1) 40458 [0.012] (1) 40479 [0.006] (1) 40580 [0.006] (0)
40778 [0.008] (0) 40894 [0.95N/0.285] (2) 40898 [0.015] (0) 40918 [1.00N/0.953] (2)
40931 [0.029] (0) 41148 [0.87N/0.371] (1) 41162 [0.166] (0) 41333 [1.00N/0.893] (0)
41346 [0.005] (1) 41549 [0.044] (0) 41562 [0.332] (1) 41734 [1.00N/0.584] (2)
41785 [0.006] (2) 41833 [0.010] (2) 41881 [1.00N/0.846] (2) 42036 [0.91N/0.105] (1)
42052 [0.822] (2) 42074 [0.003] (0) 42143 [0.025] (0) 42158 [0.006] (0)
42233 [0.056] (0) 42321 [0.039] (1) 42350 [1.00N/0.810] (0) 42388 [0.99N/0.170] (2)
42432 [0.024] (1) 42481 [0.091] (2) 42608 [0.411] (0) 42758 [0.88N/0.033] (0)

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