information on AP22
(193998..195655)
Direction: +
Frame: 3
ORF
193998..195679 (Met: 194315 194333 194348 194560 194811 195123 195165 195180 195189 195531 195594 194283 194489 194782 194823 194867 195082 195387 195437 195484 195648)
VHIVQGDYNGRGIIISWVTPLNLAGSNVVTYWKAVDGDVKPKKKRGHASTSSYRFYDYTS
GFLHHATIKGLEVCNLYNLTCYISNNITFLFQKFL*VSFLYLFGSMIPNTSMRLELMDPL
DNFPSLVLQRLDLTFHTLSALLVIKFSFTYLLKLDITNTSNSI*ITLCFVGDLGQTLASN
ETLYHYMSNPKGQAVLFPGDLSYADDHPNHDQRKWDSWGRFVEPCAAYQTFIYAAGNHEI
DFVPNIVSSHYNSLNLLLFF*SSFNFNNHMNLN*GASCLQALHSPLS*PTRPRRAYLLFG
TLLDVHLLTSSSSPLILPTVISKHVTSLRLLFLVFFLNNVLFIFQENTHLNTCGSSKS*K
VNREETPWLIVMVHSPWYNSNNYHYMEGESMRAMFESWFVNSKVDLVLSGHVHSYERSER
VSNIKYNITNGLSYPVKDPSAPIYITIGDGGNIEGIANR*KKNILFDCFVVILLI*LRSC
CGFDLILQFY*RNRAIRRIEKLVLVMQFWRFTIELTHTTHGIGTKTMNLLPLIQLCCITD
ISFQ*ELESGNTRA
GenBank annotation
193562..195682 C7A10.1010
BLASTX cluster
193562..195679 cluster 44 9 hits for protein gene
BLASTN cluster
194897..194948 cluster 40 1 hits for EST
GENSCAN
185687..195679 gene model 38
Grail
193998..194213 exon Phase: 0 Score: 89
194826..194964 exon Phase: 0 Score: 75
195043..195389 exon Phase: 1 Score: 90
Exon-Intron boundary candidatates
Acceptor |
193998 [1.00N/0.515] (0) |
194014 [0.002] (1) |
194097 [0.019] (0) |
194101 [0.052] (1) |
194289 [0.001] (0) |
194314 [1.00N/0.735] (1) |
194379 [0.001] (0) |
194463 [0.002] (0) |
194513 [0.97N/0.866] (2) |
194534 [0.006] (2) |
194576 [0.010] (2) |
194615 [0.379] (2) |
194638 [0.002] (1) |
194789 [0.605] (2) |
194792 [0.403] (2) |
194826 [0.90N/0.776] (0) |
194832 [0.61N] (0) |
194918 [0.001] (2) |
195043 [1.00N/0.999] (1) |
195090 [0.001] (0) |
195215 [0.004] (2) |
195447 [0.002] (0) |
195478 [1.00N/0.862] (1) |
195514 [0.003] (1) |
195537 [0.022] (0) |
195583 [0.003] (1) |
195634 [0.070] (1) |
195648 [0.072] (0) |
195651 [0.053] (0) |
Donor |
194133 [0.040] (1) |
194213 [1.00N/0.847] (0) |
194217 [0.117] (1) |
194388 [0.92N/0.219] (1) |
194425 [1.00N/0.916] (2) |
194512 [0.004] (2) |
194739 [1.00N/0.932] (1) |
194905 [0.048] (2) |
194964 [0.99N/0.967] (1) |
194971 [0.100] (2) |
194979 [0.193] (1) |
195089 [0.079] (0) |
195139 [0.008] (2) |
195147 [0.011] (1) |
195171 [0.276] (1) |
195202 [0.069] (2) |
195218 [0.053] (0) |
195385 [1.00N/0.979] (2) |
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