information on AP22    (193998..195655)

Direction: +

Frame: 3

ORF

    193998..195679  (Met: 194315 194333 194348 194560 194811 195123 195165 195180 195189 195531 195594 194283 194489 194782 194823 194867 195082 195387 195437 195484 195648)
VHIVQGDYNGRGIIISWVTPLNLAGSNVVTYWKAVDGDVKPKKKRGHASTSSYRFYDYTS
GFLHHATIKGLEVCNLYNLTCYISNNITFLFQKFL*VSFLYLFGSMIPNTSMRLELMDPL
DNFPSLVLQRLDLTFHTLSALLVIKFSFTYLLKLDITNTSNSI*ITLCFVGDLGQTLASN
ETLYHYMSNPKGQAVLFPGDLSYADDHPNHDQRKWDSWGRFVEPCAAYQTFIYAAGNHEI
DFVPNIVSSHYNSLNLLLFF*SSFNFNNHMNLN*GASCLQALHSPLS*PTRPRRAYLLFG
TLLDVHLLTSSSSPLILPTVISKHVTSLRLLFLVFFLNNVLFIFQENTHLNTCGSSKS*K
VNREETPWLIVMVHSPWYNSNNYHYMEGESMRAMFESWFVNSKVDLVLSGHVHSYERSER
VSNIKYNITNGLSYPVKDPSAPIYITIGDGGNIEGIANR*KKNILFDCFVVILLI*LRSC
CGFDLILQFY*RNRAIRRIEKLVLVMQFWRFTIELTHTTHGIGTKTMNLLPLIQLCCITD
ISFQ*ELESGNTRA

GenBank annotation

    193562..195682    C7A10.1010

BLASTX cluster

    193562..195679    cluster 44    9 hits for protein gene

BLASTN cluster

    194897..194948    cluster 40    1 hits for EST

GENSCAN

    185687..195679    gene model 38

Grail

    193998..194213    exon    Phase: 0    Score: 89
    194826..194964    exon    Phase: 0    Score: 75
    195043..195389    exon    Phase: 1    Score: 90

Exon-Intron boundary candidatates

Acceptor
193998 [1.00N/0.515] (0) 194014 [0.002] (1) 194097 [0.019] (0) 194101 [0.052] (1)
194289 [0.001] (0) 194314 [1.00N/0.735] (1) 194379 [0.001] (0) 194463 [0.002] (0)
194513 [0.97N/0.866] (2) 194534 [0.006] (2) 194576 [0.010] (2) 194615 [0.379] (2)
194638 [0.002] (1) 194789 [0.605] (2) 194792 [0.403] (2) 194826 [0.90N/0.776] (0)
194832 [0.61N] (0) 194918 [0.001] (2) 195043 [1.00N/0.999] (1) 195090 [0.001] (0)
195215 [0.004] (2) 195447 [0.002] (0) 195478 [1.00N/0.862] (1) 195514 [0.003] (1)
195537 [0.022] (0) 195583 [0.003] (1) 195634 [0.070] (1) 195648 [0.072] (0)
195651 [0.053] (0)
Donor
194133 [0.040] (1) 194213 [1.00N/0.847] (0) 194217 [0.117] (1) 194388 [0.92N/0.219] (1)
194425 [1.00N/0.916] (2) 194512 [0.004] (2) 194739 [1.00N/0.932] (1) 194905 [0.048] (2)
194964 [0.99N/0.967] (1) 194971 [0.100] (2) 194979 [0.193] (1) 195089 [0.079] (0)
195139 [0.008] (2) 195147 [0.011] (1) 195171 [0.276] (1) 195202 [0.069] (2)
195218 [0.053] (0) 195385 [1.00N/0.979] (2)

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