information on AP22
(173292..173687)
Direction: +
Frame: 3
ORF
172875..174110 (Met: 173064 173079 173100 173310 173352 173523 173541 173763 173817 173877 173952 174108)
IVEDYVSHSSIFYKRLLSNCGLCCIAYIDANTFLFGFILALRSTLDSDIASKGRIYHETY
GCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENAEQRVWQRLNYFWFLK
REWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDLPRLLEEV
DYGQKGINTLLSLEETYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRP
VESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSSRCKVKNMGLR
FADLLDRLSVEFPEMRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQSGNSRILEQM
RRGYTREAYLDLVKKIRSIIPDVAITSDFITGKPTQNLYVTCLRIGLLRILM
GenBank annotation
172642..174673 C7A10.970
BLASTX cluster
172878..174628 cluster 41 2 hits for protein gene
BLASTN cluster
None
GENSCAN
173079..174670 gene model 35
127799..139538 gene model 28
Suboptimal exon
172951..174048 Intr Phase: 1 Score: 0.561
Grail
173079..174090 exon Phase: 0 Score: 86
Exon-Intron boundary candidatates
Acceptor |
172901 [0.042] (2) |
172951 [0.002] (1) |
172960 [0.015] (1) |
173000 [0.022] (2) |
173003 [0.013] (2) |
173032 [0.003] (1) |
173064 [0.047] (0) |
173122 [0.001] (1) |
173128 [0.003] (1) |
173263 [0.046] (1) |
173387 [0.86N/0.239] (2) |
173389 [0.001] (1) |
173455 [0.003] (1) |
173458 [0.001] (1) |
173530 [0.61N/0.001] (1) |
173573 [0.177] (2) |
173579 [0.010] (2) |
173599 [0.001] (1) |
173662 [0.003] (1) |
173678 [0.007] (2) |
173695 [0.004] (1) |
173710 [0.036] (1) |
173806 [0.001] (1) |
173815 [0.011] (1) |
173828 [0.001] (2) |
173939 [0.088] (2) |
174000 [0.001] (0) |
174019 [0.078] (1) |
Donor |
173031 [0.013] (1) |
173058 [0.003] (1) |
173198 [0.011] (0) |
173246 [0.007] (0) |
173307 [0.017] (1) |
173421 [0.006] (1) |
173480 [0.74N] (0) |
173615 [0.025] (0) |
173637 [0.025] (1) |
173700 [0.003] (1) |
173709 [0.013] (1) |
173727 [0.008] (1) |
173746 [0.004] (2) |
173748 [0.007] (1) |
173766 [0.011] (1) |
173827 [0.017] (2) |
173928 [0.023] (1) |
173961 [0.062] (1) |
174048 [1.00N/0.890] (1) |
174071 [0.74N/0.009] (0) |
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