information on AP22    (158081..159150)

Direction: +

Frame: 2

ORF

    157988..159171  (Met: 158006 158012 158066 158297 158351 158647 158974 159034 159109 159121 159133 159136 159148 158483 158509 158592 158603)
QRRRRGMAMLVDPPNGIRQEGKHYYTMWQTLFEIDTKYVPIKPIGRGAYGVVCSSINSET
NERVAIKKIHNVFENRIDALRTLRELKLLRHVRHENVISLKDVMLPTHRYSFRDVYLVYE
LMDSDLNQIIKSSQSLSDDHCKYFLFQVRWFDTFSVSLVKLWFDD*CIFLSTL*AKRIEV
SSLSKHPSSRFKARESLSEC*VI*ICDFGLARTYEQFMTEYVVTRWYRAPELLLCCDNYG
TSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIINVVGSQQDWDLQFIDNQKARRFIKS
LPFSKGTHFSHIYPHANPLAIDLLQRMLVFDPTKRISVSDALLHPYMEGLLEPECNPSEN
VPVSSLEIDENMEGDMIREMMWEEMLHYLPRA

GenBank annotation

    158006..159174    C7A10.910

BLASTX cluster

    158006..159186    cluster 35    103 hits for protein gene

BLASTN cluster

    158005..158157    cluster 30    1 hits for EST

GENSCAN

    156320..162416    gene model 31
    Suboptimal exon

        157988..158428    Intr    Phase: 0    Score: 0.347

Grail

    158006..158485    exon    Phase: 0    Score: 99

Exon-Intron boundary candidatates

Acceptor
157988 [0.187] (0) 157993 [0.006] (2) 157996 [0.013] (2) 157999 [0.002] (2)
158002 [0.004] (2) 158161 [0.010] (2) 158192 [0.004] (0) 158257 [0.016] (2)
158314 [0.004] (2) 158372 [0.304] (0) 158429 [0.090] (0) 158468 [0.001] (0)
158512 [0.94N/0.503] (2) 158520 [0.002] (1) 158522 [0.001] (0) 158543 [0.007] (0)
158573 [0.002] (0) 158644 [0.059] (2) 158654 [0.119] (0) 158741 [0.087] (0)
158756 [0.027] (0) 158835 [0.003] (1) 158864 [0.003] (0) 158911 [0.044] (2)
158971 [0.371] (2) 159090 [0.002] (1) 159101 [0.001] (0) 159129 [0.025] (1)
Donor
158097 [0.049] (2) 158135 [0.007] (1) 158140 [0.014] (0) 158260 [0.016] (0)
158313 [0.95N/0.734] (2) 158412 [0.74N/0.062] (2) 158428 [1.00N/0.994] (0) 158436 [0.163] (2)
158654 [0.007] (1) 158736 [0.004] (2) 158911 [0.94N/0.007] (0) 159058 [0.010] (0)
159081 [0.245] (2)

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