information on AP22    (19907..19133)

Direction: -

Frame: 2

ORF

    19937..19041  (Met: 19907 19676 19478 19406 19196 19094 19082 19061)
SPPPYDQIQTMSTALINSITYFLSEHPYIVGFRWSNSQSWGSTWSFLFTSISLYIAVSSS
LHILLSAVRRSNRSVPLGHIPEIHSLLMSILSATIFAGILLSAAAEIRDTRWLWRRSKTA
TPLQWLLCFPLGTRPSGRVFFWSYVFYLTRFLHMFRTIFAVLRSRRLAVSQLFCNSVMAF
TSFLWLEFSQSYQILAILSTTLVYSVVYGYRFWTGFGLPGSAFPSFVVNCQLVLVGCNLV
SHAGVLTMHLFKGGCNGIGAWGLNSVLNGAILLLFLNFYVRMHSPMRRHINKMNSQRNA

GenBank annotation

    19907..19038    C7A10.530

BLASTX cluster

    19907..19041    cluster 4    1 hits for protein gene

BLASTN cluster

    20024..19588    cluster 4    2 hits for EST

GENSCAN

    19907..16244    gene model 2

    Suboptimal exon

        19907..19041    Sngl    Phase: 0    Score: 0.605
        19907..19049    Init    Phase: 0    Score: 0.108

Grail

    19478..19038    exon    Phase: 0    Score: 81
    19907..19038    exon    Phase: 0    Score: 85

Exon-Intron boundary candidatates

Acceptor
19180 [0.024] (1) 19244 [0.004] (0) 19305 [0.047] (2) 19367 [0.009] (0)
19378 [0.001] (1) 19446 [0.003] (2) 19621 [0.002] (1) 19705 [0.178] (1)
19827 [0.002] (2)
Donor
19049 [0.85N/0.094] (1) 19133 [0.99N/0.378] (1) 19143 [0.012] (0) 19154 [0.007] (1)
19250 [0.009] (1) 19280 [0.005] (1) 19294 [0.011] (2) 19706 [0.009] (1)
19727 [0.006] (1) 19737 [0.74N/0.019] (0) 19927 [0.93N/0.466] (2)

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