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Gene/Protein Characteristic Table for FLJ00133

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Product ID	ORK05090
Accession No	AK074062
Clone name	sh02303
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5282 bp) Predicted protein sequence (1282 aa)
Source	Human spleen

Length: 5282 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1282 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001438	180	191	PR00010	Type II EGF-like signature
	IPR001438	310	317	PR00010	Type II EGF-like signature
	IPR001438	508	518	PR00010	Type II EGF-like signature
	IPR001438	519	525	PR00010	Type II EGF-like signature
HMMPfam	IPR010362	37	127	PF06119	NIDO
	IPR006209	141	177	PF00008	EGF-like domain
	IPR006209	184	215	PF00008	EGF-like domain
	IPR006209	222	253	PF00008	EGF-like domain
	IPR006209	260	291	PF00008	EGF-like domain
	IPR006209	302	333	PF00008	EGF-like domain
	IPR006209	414	445	PF00008	EGF-like domain
	IPR006209	453	484	PF00008	EGF-like domain
	IPR006209	492	523	PF00008	EGF-like domain
	IPR006209	530	561	PF00008	EGF-like domain
	IPR000436	567	620	PF00084	Sushi domain/SCR domain/CCP module
	IPR006209	626	657	PF00008	EGF-like domain
	IPR006209	664	695	PF00008	EGF-like domain
	IPR006209	702	733	PF00008	EGF-like domain
	IPR006209	740	771	PF00008	EGF-like domain
	IPR003961	775	856	PF00041	Fibronectin
	IPR003961	874	957	PF00041	Fibronectin
	IPR003961	973	1055	PF00041	Fibronectin
	IPR006209	1180	1211	PF00008	EGF-like domain
HMMSmart	IPR003886	1	129	SM00539	Nidogen
	IPR006210	140	178	SM00181	Type I EGF
	IPR001881	141	178	SM00179	EGF-like calcium-binding
	IPR001881	180	216	SM00179	EGF-like calcium-binding
	IPR006210	183	216	SM00181	Type I EGF
	IPR006210	221	254	SM00181	Type I EGF
	IPR001881	222	254	SM00179	EGF-like calcium-binding
	IPR001881	256	292	SM00179	EGF-like calcium-binding
	IPR006210	259	292	SM00181	Type I EGF
	IPR001881	300	334	SM00179	EGF-like calcium-binding
	IPR006210	301	334	SM00181	Type I EGF
	IPR006210	340	369	SM00181	Type I EGF
	IPR006210	376	410	SM00181	Type I EGF
	IPR001881	403	446	SM00179	EGF-like calcium-binding
	IPR006210	413	446	SM00181	Type I EGF
	IPR006210	452	485	SM00181	Type I EGF
	IPR001881	453	485	SM00179	EGF-like calcium-binding
	IPR001881	488	524	SM00179	EGF-like calcium-binding
	IPR006210	491	524	SM00181	Type I EGF
	IPR006210	529	562	SM00181	Type I EGF
	IPR001881	530	562	SM00179	EGF-like calcium-binding
	IPR000436	567	620	SM00032	Sushi domain/SCR domain/CCP module
	IPR001881	622	658	SM00179	EGF-like calcium-binding
	IPR006210	625	658	SM00181	Type I EGF
	IPR001881	660	696	SM00179	EGF-like calcium-binding
	IPR006210	663	696	SM00181	Type I EGF
	IPR001881	698	734	SM00179	EGF-like calcium-binding
	IPR006210	701	734	SM00181	Type I EGF
	IPR001881	738	772	SM00179	EGF-like calcium-binding
	IPR006210	739	772	SM00181	Type I EGF
	IPR003961	775	860	SM00060	Fibronectin
	IPR003961	874	956	SM00060	Fibronectin
	IPR003961	973	1054	SM00060	Fibronectin
	IPR006210	1179	1212	SM00181	Type I EGF
	IPR001881	1180	1212	SM00179	EGF-like calcium-binding
ProfileScan	NULL	134	762	PS50311	NULL
	NULL	180	216	PS50034	NULL
	IPR000742	184	215	PS50026	EGF-like domain
	NULL	256	292	PS50034	NULL
	IPR000742	260	291	PS50026	EGF-like domain
	IPR000742	302	333	PS50026	EGF-like domain
	IPR000742	414	445	PS50026	EGF-like domain
	IPR000742	453	484	PS50026	EGF-like domain
	NULL	488	524	PS50034	NULL
	IPR000742	492	523	PS50026	EGF-like domain
	IPR000742	530	561	PS50026	EGF-like domain
	NULL	622	658	PS50034	NULL
	IPR000742	626	657	PS50026	EGF-like domain
	NULL	660	696	PS50034	NULL
	IPR000742	664	695	PS50026	EGF-like domain
	IPR000742	702	733	PS50026	EGF-like domain
	IPR000742	1180	1211	PS50026	EGF-like domain
ScanRegExp	IPR006209	166	177	PS00022	EGF-like domain
	IPR006209	166	177	PS01186	EGF-like domain
	IPR006209	204	215	PS00022	EGF-like domain
	IPR006209	204	215	PS01186	EGF-like domain
	IPR006209	242	253	PS00022	EGF-like domain
	IPR006209	242	253	PS01186	EGF-like domain
	IPR001881	256	280	PS01187	EGF-like calcium-binding
	IPR000152	271	282	PS00010	Aspartic acid and asparagine hydroxylation site
	IPR006209	280	291	PS00022	EGF-like domain
	IPR006209	280	291	PS01186	EGF-like domain
	IPR000152	313	324	PS00010	Aspartic acid and asparagine hydroxylation site
	IPR006209	322	333	PS00022	EGF-like domain
	IPR006209	322	333	PS01186	EGF-like domain
	IPR006209	357	368	PS00022	EGF-like domain
	IPR006209	357	368	PS01186	EGF-like domain
	IPR006209	434	445	PS00022	EGF-like domain
	IPR006209	434	445	PS01186	EGF-like domain
	IPR006209	473	484	PS00022	EGF-like domain
	IPR006209	512	523	PS00022	EGF-like domain
	IPR006209	512	523	PS01186	EGF-like domain
	IPR000152	541	552	PS00010	Aspartic acid and asparagine hydroxylation site
	IPR006209	550	561	PS00022	EGF-like domain
	IPR006209	550	561	PS01186	EGF-like domain
	IPR001881	622	646	PS01187	EGF-like calcium-binding
	IPR000152	637	648	PS00010	Aspartic acid and asparagine hydroxylation site
	IPR006209	646	657	PS00022	EGF-like domain
	IPR006209	646	657	PS01186	EGF-like domain
	IPR001881	660	684	PS01187	EGF-like calcium-binding
	IPR000152	675	686	PS00010	Aspartic acid and asparagine hydroxylation site
	IPR006209	684	695	PS00022	EGF-like domain
	IPR006209	684	695	PS01186	EGF-like domain
	IPR006209	722	733	PS00022	EGF-like domain
	IPR006209	760	771	PS00022	EGF-like domain
	IPR006209	760	771	PS01186	EGF-like domain
	IPR006209	1200	1211	PS00022	EGF-like domain
	IPR006209	1200	1215	PS01186	EGF-like domain

Experimental conditions

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