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Gene/Protein Characteristic Table for FLJ00122

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Product ID	ORK05086
Accession No	AK074051
Clone name	sh00417
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5604 bp) Predicted protein sequence (1736 aa)
Source	Human spleen

Length: 5604 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1736 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR000538	1379	1475	PD000918	Link
HMMPfam	IPR006209	56	93	PF00008	EGF-like domain
	IPR006209	142	178	PF00008	EGF-like domain
	IPR000782	191	314	PF02469	Beta-Ig-H3/fasciclin
	IPR000782	334	452	PF02469	Beta-Ig-H3/fasciclin
	IPR006209	533	568	PF00008	EGF-like domain
	IPR006209	702	738	PF00008	EGF-like domain
	IPR000782	793	911	PF02469	Beta-Ig-H3/fasciclin
	IPR000782	937	1068	PF02469	Beta-Ig-H3/fasciclin
	IPR006209	1236	1265	PF00008	EGF-like domain
	IPR006209	1271	1306	PF00008	EGF-like domain
	IPR006209	1312	1349	PF00008	EGF-like domain
	IPR000538	1382	1475	PF00193	Link
HMMSmart	IPR006210	14	51	SM00181	Type I EGF
	IPR006210	55	94	SM00181	Type I EGF
	IPR006210	98	137	SM00181	Type I EGF
	IPR006210	141	179	SM00181	Type I EGF
	IPR006210	532	569	SM00181	Type I EGF
	IPR006210	579	613	SM00181	Type I EGF
	IPR006210	620	655	SM00181	Type I EGF
	IPR006210	659	697	SM00181	Type I EGF
	IPR006210	701	739	SM00181	Type I EGF
	IPR006210	743	781	SM00181	Type I EGF
	IPR006210	1143	1183	SM00181	Type I EGF
	IPR006210	1193	1227	SM00181	Type I EGF
	IPR006210	1235	1266	SM00181	Type I EGF
	IPR006210	1270	1307	SM00181	Type I EGF
	IPR006210	1311	1350	SM00181	Type I EGF
	IPR000538	1381	1476	SM00445	Link
ProfileScan	IPR000782	179	312	PS50213	Beta-Ig-H3/fasciclin
	IPR000782	322	450	PS50213	Beta-Ig-H3/fasciclin
	NULL	508	769	PS50311	NULL
	IPR000782	781	909	PS50213	Beta-Ig-H3/fasciclin
	IPR000782	925	1066	PS50213	Beta-Ig-H3/fasciclin
	NULL	1122	1338	PS50311	NULL
	IPR000782	1496	1631	PS50213	Beta-Ig-H3/fasciclin
ScanRegExp	IPR006209	37	50	PS01186	EGF-like domain
	IPR006209	80	93	PS01186	EGF-like domain
	IPR006209	123	136	PS01186	EGF-like domain
	IPR006209	165	178	PS01186	EGF-like domain
	IPR006209	557	568	PS00022	EGF-like domain
	IPR006209	557	571	PS01186	EGF-like domain
	IPR002049	557	591	PS01248	Laminin-type EGF-like domain
	IPR006209	601	612	PS00022	EGF-like domain
	IPR006209	601	612	PS01186	EGF-like domain
	IPR006209	641	654	PS01186	EGF-like domain
	IPR006209	683	696	PS01186	EGF-like domain
	IPR006209	1171	1182	PS00022	EGF-like domain
	IPR006209	1171	1185	PS01186	EGF-like domain
	IPR002049	1171	1205	PS01248	Laminin-type EGF-like domain
	IPR006209	1215	1226	PS00022	EGF-like domain
	IPR006209	1215	1226	PS01186	EGF-like domain
	IPR006209	1293	1306	PS01186	EGF-like domain
	IPR006209	1482	1495	PS01186	EGF-like domain

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1646	GAGIFFAIILVTGAVALAAYSY	1667	PRIMARY	22

Experimental conditions

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