Gene/Protein Characteristic Table for KIAA0871
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Product ID ORK00666
Accession No AB020678
Description RUN and FYVE domain containing 3, transcript variant 2
Clone name hk06991
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4207 bp)
Predicted protein sequence (471 aa)
Flexi ORF Clone FXC00666
Source Human adult brain
Rouge ID mKIAA0871 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4207 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2259 bp
Genome contig ID gi89161207f_71706618
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
AAACTGTAGTACTAGAATAAAAAAAATGGAAAATC
Flanking genome sequence
(171521 - 171570)
----+----*----+----*----+----*----+----*----+----*
AGCTTTTCCTCTGCCTGGTTCACCTTCATCTTACTTTTCTTTAGAATTTG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 4 f 71806618 71878137 13 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 471 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q7L099 4e-160 100.0 Protein RUFY3; ...
Homo sapiens
Q5R4V2 1.3e-159 99.8 Protein RUFY3.
Pongo abelii
ABZ92309 1.7e-159 99.8 RUN and FYVE do...
synthetic construct
XP_532400 1.9e-159 99.4 similar to rap2...
Canis lupus fam...
Q5FVJ0 6e-159 99.1 Protein RUFY3; ...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB040970 3e-39 62.9 KIAA1537
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR004012 105 229 PF02759 RUN
HMMSmart IPR004012 165 227 SM00593 RUN
ProfileScan IPR004012 97 229 PS50826 RUN
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GGAAGGAGTGATCAAATACCG
Primer_r AAGATGTGTGACTAAGTGGAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 4
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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