Gene/Protein Characteristic Table for KIAA1095
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Product ID ORK00740
Accession No AB029018
Description PDZ domain containing ring finger 3, transcript variant 1
Clone name hk06736
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4161 bp)
Predicted protein sequence (1098 aa)
Flexi ORF Clone FXC00740
Source Human adult brain
Rouge ID mKIAA1095 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4161 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 864 bp
Genome contig ID gi89161205r_73414342
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
CAGTAAAATGAAGTTAAAATAAATTATTATTTTCT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTTGATATGTTTTGATGTGATTCCTCATTTTGCAGTGGTGCCTATAAAA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 r 73514342 73756762 10 99.8 Perfect prediction
Features of the protein sequence
Description

Length: 1098 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001098466 0 98.4 similar to PDZ ...
Macaca mulatta
Q9UPQ7 0 100.0 PDZ domain-cont...
Homo sapiens
AAI50624 0 99.9 PDZ domain cont...
Homo sapiens
XP_516586 0 99.7 PDZ domain cont...
Pan troglodytes
Q69ZS0 0 94.4 PDZ domain-cont...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB040877 1.6e-41 49.9 KIAA1444
D63481 1.2e-05 30.1 KIAA0147
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001841 50 88 PF00097 Zinc finger
IPR001293 133 171 PF02176 Zinc finger
IPR001478 281 368 PF00595 PDZ/DHR/GLGF
IPR001478 451 533 PF00595 PDZ/DHR/GLGF
HMMSmart IPR001841 50 87 SM00184 Zinc finger
IPR001478 289 371 SM00228 PDZ/DHR/GLGF
IPR001478 461 536 SM00228 PDZ/DHR/GLGF
ProfileScan IPR001841 50 85 PS50089 Zinc finger
IPR001293 133 171 PS50145 Zinc finger
IPR001478 281 371 PS50106 PDZ/DHR/GLGF
IPR001478 451 520 PS50106 PDZ/DHR/GLGF
ScanRegExp IPR001841 65 74 PS00518 Zinc finger
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GCGCGAGTTCATGATGCAGAG
Primer_r TTGTATACTCTAGTGCCGTCC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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