Gene/Protein Characteristic Table for KIAA1072
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Product ID ORK00730
Accession No AB028995
Description protein phosphatase, Mg2+/Mn2+ dependent, 1E, transcript variant 1
Clone name hj06360
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5035 bp)
Predicted protein sequence (759 aa)
Flexi ORF Clone FXC00730
Source Human adult brain
Rouge ID mKIAA1072 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5035 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2634 bp
Genome contig ID gi51511734f_54088231
PolyA signal sequence
(TATAAA,-22)
+----*----+----*----+----*----+----
TCTATATAATATCTATAAACTGTTAATGCTGAGGT
Flanking genome sequence
(327579 - 327628)
----+----*----+----*----+----*----+----*----+----*
ATAGTCTGTGAATTATGTGTTTTGTATTTTTATTCATTGTGTAATTTAGT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 17 f 54188231 54415808 7 99.0 Perfect prediction
Features of the protein sequence
Description

Length: 759 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAM76058 0 100.0 partner of PIX ...
Homo sapiens
NP_055721 0 99.7 protein phospha...
Homo sapiens
XP_853253 0 91.0 similar to prot...
Canis lupus fam...
Q8WY54 0 98.7 Protein phospha...
Homo sapiens
Q80TL0 0 89.3 Protein phospha...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D13640 1.7e-28 47.1 KIAA0015
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR014045 234 485 PF00481 Protein phosphatase 2C
HMMSmart IPR001932 223 490 SM00332 Protein phosphatase 2C-related
ScanRegExp IPR000222 272 280 PS01032 Protein phosphatase 2C
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f ACACATGCTAGGCTTTCTCAG
Primer_r TAACGACCACACTAGAACTAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 17
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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