Gene/Protein Characteristic Table for KIAA0558
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Product ID ORK00563
Accession No AB011130
Description calcium channel, voltage-dependent, alpha 2/delta subunit 2, transcript variant 1
Clone name hh01485
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5303 bp)
Predicted protein sequence (1145 aa)
Flexi ORF Clone FXC00563
Source Human adult brain
Rouge ID mKIAA0558 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5303 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1864 bp
Genome contig ID gi89161205r_50275237
PolyA signal sequence
(ATTAAA,-27)
+----*----+----*----+----*----+----
GATCAGTTATTAAATAATGTTCATATTTTCACTTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATGGTTCCCATCCACTGTATCAGCTTGGGGGTGAGGACTGGGTAGCTA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 3 r 50375237 50515859 38 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1145 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW65119 0 99.9 calcium channel...
Homo sapiens
CAB86192 0 99.7 calcium channel...
Homo sapiens
Q9NY47 0 99.0 Voltage-depende...
Homo sapiens
XP_001090735 0 98.1 similar to calc...
Macaca mulatta
AAI58059 0 96.5 Cacna2d2 protei...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR013608 141 265 PF08399 VWA N-terminal
IPR002035 291 469 PF00092 von Willebrand factor
IPR004010 485 574 PF02743 Cache
IPR013680 580 666 PF08473 Voltage-dependent calcium channel
HMMSmart IPR002035 289 464 SM00327 von Willebrand factor
ProfileScan IPR002035 291 469 PS50234 von Willebrand factor
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f TTACAAGGAATCACACACACG
Primer_r GCCATTTCCTTTTCTCTGCCC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 3
Experimental conditions
Panel name GeneBridge 4
Primer_f TTACAAGGAATCACACACACG
Primer_r GCCATTTCCTTTTCTCTGCCC
PCR product length 120 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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