Gene/Protein Characteristic Table for KIAA0608
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Product ID ORK00574
Accession No AB011180
Description TBC1 domain family, member 12
Clone name hh00889b
Vector information
The cDNA fragment was inserted at the NotI site of the
cDNA sequence DNA sequence (3344 bp)
Predicted protein sequence (775 aa)
Flexi ORF Clone FXC00574
Source Human adult brain
Rouge ID mKIAA0608 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3344 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1015 bp
Genome contig ID gi89161187f_96052342
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATGCATAATTTTTCCTAATCAGTGGAAATAAGAAT
Flanking genome sequence
(231518 - 231567)
----+----*----+----*----+----*----+----*----+----*
AAAAGAAAAAGGTAAAGTTAATTTTTTTTCTAAGTCTACATCCTATCTCT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 10 f 96152342 96283858 14 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 775 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_507936 0 100.0 TBC1 domain fam...
Pan troglodytes
BAG09776 0 100.0 TBC1 domain fam...
synthetic construct
O60347 0 99.2 TBC1 domain fam...
Homo sapiens
XP_849591 0 86.3 similar to TBC1...
Canis lupus fam...
XP_001090278 1.3e-213 87.6 TBC1 domain fam...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB037743 1.1e-77 70.6 KIAA1322
D13644 2.5e-08 28.1 KIAA0019
AB029031 2.1e-07 21.7 KIAA1108
AB011175 1.1e-06 22.3 KIAA0603
AB028978 9.6e-05 24.4 KIAA1055
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000195 483 714 PF00566 RabGAP/TBC
HMMSmart IPR000195 481 715 SM00164 RabGAP/TBC
ProfileScan IPR000195 484 692 PS50086 RabGAP/TBC
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f GACATTGTTTCCAGTTCTGAC
Primer_r CTAGGTAACTCGAATTTGCCC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 10
Experimental conditions
Panel name GeneBridge 4
Primer_f GACATTGTTTCCAGTTCTGAC
Primer_r CTAGGTAACTCGAATTTGCCC
PCR product length 222 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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