Gene/Protein Characteristic Table for KIAA0409
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00068
Accession No AB007869
Description ribosomal RNA processing 8, methyltransferase, homolog (yeast)
Clone name hg01499
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (6469 bp)
Predicted protein sequence (464 aa)
Flexi ORF Clone FXC00068
Source Human adult brain
Rouge ID mKIAA0409 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 6469 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 5074 bp
Genome contig ID gi51511727r_6473043
PolyA signal sequence
Flanking genome sequence
(99838 - 99789)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 11 r 6572881 6581332 7 99.2 Perfect prediction
Features of the protein sequence

Length: 464 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001100895 4.2e-153 93.5 similar to T07A...
Macaca mulatta
XP_534039 2.5e-128 81.3 similar to T07A...
Canis lupus fam...
BAE42874 1.3e-118 76.6 unnamed protein...
Mus musculus
BAE41665 2.4e-118 76.4 unnamed protein...
Mus musculus
Q9DB85 2.4e-117 76.0 Cerebral protei...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR007823 245 464 PF05148 Methyltransferases-related
ScanRegExp IPR004033 388 402 PS01184 UbiE/COQ5 methyltransferase
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 11
Experimental conditions
Panel name GeneBridge 4
PCR product length 153 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT