Gene/Protein Characteristic Table for KIAA1181
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Product ID ORK02021
Accession No AB033007
Description endoplasmic reticulum-golgi intermediate compartment 1
Clone name hf00712a
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (2432 bp)
Predicted protein sequence (336 aa)
Flexi ORF Clone FXC02021
Source Human adult brain
Rouge ID mKIAA1181 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 2432 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1420 bp
Genome contig ID gi51511721f_172093937
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TCCAGTGGAAGGATTTTTAAAATTATCTTATGGAT
Flanking genome sequence
(217910 - 217959)
----+----*----+----*----+----*----+----*----+----*
AGCTCAAGTCTCTGCCATTTGTAATTTTTGGCTCTAAGCTCCGATTGGAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 5 f 172193884 172311845 10 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 336 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001099287 2e-143 99.1 endoplasmic ret...
Macaca mulatta
XP_001063333 9.2e-125 89.4 similar to Endo...
Rattus norvegicus
XP_001066818 5.1e-124 89.1 similar to Endo...
Rattus norvegicus
Q969X5 2.7e-123 100.0 Endoplasmic ret...
Homo sapiens
XP_001499596 5.7e-123 89.6 similar to Endo...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR012936 131 333 PF07970 Protein of unknown function DUF1692

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 72 AIISICCCLFILFLFLSELTGFI 94 PRIMARY 23
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TAATCATGCAGCCTCTCAGAC
Primer_r ATGGAGGAGCACAGTGTCAAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 5
Experimental conditions
Panel name GeneBridge 4
Primer_f TAATCATGCAGCCTCTCAGAC
Primer_r ATGGAGGAGCACAGTGTCAAG
PCR product length 174 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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