Gene/Protein Characteristic Table for KIAA0049
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Product ID ORK00385
Accession No D30756
Description neighbor of BRCA1 gene 1, transcript variant 1
Clone name ha01035
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (4654 bp)
Predicted protein sequence (969 aa)
Flexi ORF Clone FXC00385
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0049 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 4654 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1613 bp
Genome contig ID gi51511734f_38476024
PolyA signal sequence
Flanking genome sequence
(243209 - 243258)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 17 f 38576024 38719231 21 99.6 Perfect prediction
Features of the protein sequence

Length: 969 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAS15047 0 100.0 migration-induc...
Homo sapiens
Q14596 0 99.9 Next to BRCA1 g...
Homo sapiens
BAF82694 0 99.8 unnamed protein...
Homo sapiens
XP_001155667 0 99.2 neighbor of BRC...
Pan troglodytes
XP_001155005 0 99.2 neighbor of BRC...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000270 7 88 PF00564 Octicosapeptide/Phox/Bem1p
IPR000433 214 257 PF00569 Zinc finger
IPR000449 919 959 PF00627 Ubiquitin-associated/Translation elongation factor EF1B
HMMSmart IPR000270 7 88 SM00666 Octicosapeptide/Phox/Bem1p
IPR000433 214 259 SM00291 Zinc finger
ProfileScan IPR000433 214 260 PS50135 Zinc finger
IPR000449 916 960 PS50030 Ubiquitin-associated/Translation elongation factor EF1B
ScanRegExp IPR000433 220 246 PS01357 Zinc finger
Expression profile

Northern blot
Experimental conditions
PCR conditions test

RH mapping information

Chromosome No. 17
Experimental conditions
Panel name Genebridge 4
PCR product length 145 (0.9k) bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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