FLJ00081

Product ID	ORK05065
Accession No	AK074035
Clone name	as00081
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4555 bp) Predicted protein sequence (333 aa)
Source	Human spleen

	N-terminal truncation	Coding interruption
cloned DNA seq	No warning	Warning

Length: 333 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAB84861	3.3e-143	100.0	FLJ00081 protei...	Homo sapiens
CAH18708	5.4e-137	99.1	hypothetical pr...	Homo sapiens
EAW69022	5.7e-137	99.1	XPA binding pro...	Homo sapiens
BAB15807	6.4e-137	99.1	XAB2 [Homo sapi...	Homo sapiens
Q9HCS7	6.4e-137	99.1	Pre-mRNA-splici...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB033003	1.8e-130	99.1	KIAA1177

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMSmart	IPR001440	47	80	SM00028	TPR repeat
	IPR003107	61	96	SM00386	RNA-processing protein
	IPR001440	186	219	SM00028	TPR repeat
	IPR003107	200	236	SM00386	RNA-processing protein
	IPR001440	224	257	SM00028	TPR repeat
	IPR003107	238	287	SM00386	RNA-processing protein
	IPR003107	289	321	SM00386	RNA-processing protein
ProfileScan	IPR001440	47	80	PS50005	TPR repeat
	IPR001440	186	257	PS50293	TPR repeat
	IPR001440	224	257	PS50005	TPR repeat

Primer_f
Primer_r
PCR conditions	test