Gene/Protein Characteristic Table for KIAA1839
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Product ID ORK02057
Accession No AB058742
Description RNA-binding region (RNP1, RRM) containing 3
Clone name fh00676
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5385 bp)
Predicted protein sequence (541 aa)
Flexi ORF Clone FXC02057
Source Human fetal brain
Rouge ID mKIAA1839 by Kazusa Mouse cDNA Project
Note We replaced fj11961, former representative clones for KIAA1839 with fh00676. (2001/6/05)
Features of the cloned cDNA sequence

Length: 5385 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning Warning
Integrity of 3' end
Length of 3'UTR 3615 bp
Genome contig ID gi89161185f_103740929
PolyA signal sequence
Flanking genome sequence
(182743 - 182792)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 1 f 103840929 103923670 17 100.0 Internal No-hit
Features of the protein sequence

Length: 541 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q96LT9 5e-184 100.0 RNA-binding pro...
Homo sapiens
BAF82533 4.4e-183 99.8 unnamed protein...
Homo sapiens
Q5R6C7 5e-183 99.2 RNA-binding pro...
Pongo abelii
Q3MHP0 1.5e-171 93.2 RNA-binding pro...
Bos taurus
XP_547257 3.2e-171 92.5 similar to RNA-...
Canis lupus fam...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000504 53 121 PF00076 RNA recognition motif
IPR000504 446 522 PF00076 RNA recognition motif
HMMSmart IPR000504 52 122 SM00360 RNA recognition motif
IPR000504 445 523 SM00360 RNA recognition motif
ProfileScan IPR000504 51 126 PS50102 RNA recognition motif
IPR000504 444 527 PS50102 RNA recognition motif
Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 1
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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