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Order Kazusa clone(s) from : |
| Product ID | ORK06730 |
|---|---|
| Accession No | AB018333 |
| Description | SAM and SH3 domain containing 1 |
| Clone name | hk05609 |
| Vector information | |
| cDNA sequence | DNA sequence (4469 bp) Predicted protein sequence (1319 aa) |
| Source | Human adult brain |
| Rouge ID |
mKIAA0790
by Kazusa Mouse cDNA Project
|
Length: 4469 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).
| N-terminal truncation | Coding interruption | |
|---|---|---|
| cloned DNA seq | Warning | No warning |
Length: 1319 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment)![]() |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database
(FASTA output,
Multiple alignment)
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| HMMPfam | IPR011511 | 630 | 685 | PF07653 | Variant SH3 |
| IPR011510 | 707 | 769 | PF07647 | Sterile alpha motif homology 2 | |
| IPR011510 | 1246 | 1313 | PF07647 | Sterile alpha motif homology 2 | |
| HMMSmart | IPR001452 | 629 | 686 | SM00326 | Src homology-3 |
| IPR001660 | 702 | 769 | SM00454 | Sterile alpha motif SAM | |
| IPR001660 | 1246 | 1313 | SM00454 | Sterile alpha motif SAM | |
| ProfileScan | IPR001660 | 705 | 769 | PS50105 | Sterile alpha motif SAM |
| IPR001660 | 1249 | 1313 | PS50105 | Sterile alpha motif SAM |
RT-PCR-ELISA
|
Experimental conditions| Primer_f | ATTAGTGCGGTTCTCTTTGAC |
|---|---|
| Primer_r | AGACTGGAGATAGAGCATTCG |
| PCR conditions | 95 °C 30 sec 55 °C 30 sec 72 °C 60 sec 30 cycles![]() |
Chromosome No. 6
Experimental conditions| Panel name | GeneBridge 4 |
|---|---|
| Primer_f | ATTAGTGCGGTTCTCTTTGAC |
| Primer_r | AGACTGGAGATAGAGCATTCG |
| PCR product length | 110 bp |
| PCR conditions | 95 °C 15 sec 62 °C 60 sec 30 cycles |