Gene/Protein Characteristic Table for KIAA0690
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00606
Accession No AB014590
Description ribosomal RNA processing 12 homolog, transcript variant 3
Clone name hk03594
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4038 bp)
Predicted protein sequence (1214 aa)
Flexi ORF Clone FXC00606
Source Human adult brain
Rouge ID mKIAA0690 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4038 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Features of the protein sequence
Description

Length: 1214 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAI40776 0 99.9 ribosomal RNA p...
Homo sapiens
XP_001102356 0 97.7 hypothetical pr...
Macaca mulatta
XP_001102447 0 97.3 hypothetical pr...
Macaca mulatta
NP_001138586 0 96.8 ribosomal RNA p...
Homo sapiens
Q5JTH9 0 92.2 RRP12-like protein.
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000357 327 363 PF02985 HEAT
IPR012978 388 586 PF08161 Domain of unknown function

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 822 LIYPGLVGAVTMVSCSILALTHL 844 PRIMARY 23
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f TGACTTGGAACTAGGGCTTGG
Primer_r AGGCCACATTCCCATCTCCAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 10
Experimental conditions
Panel name GeneBridge 4
Primer_f TGACTTGGAACTAGGGCTTGG
Primer_r AGGCCACATTCCCATCTCCAG
PCR product length 106 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp