Gene/Protein Characteristic Table for KIAA0546
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Product ID ORK00095
Accession No AB011118
Description zinc finger, C3H1-type containing
Clone name ef04555
Vector information
The cDNA fragment was inserted at the XhoI-SacI site of the ...
cDNA sequence DNA sequence (7597 bp)
Predicted protein sequence (1919 aa)
Flexi ORF Clone FXC00095
Rouge ID mKIAA0546 by Kazusa Mouse cDNA Project
Note We replaced hh00504, former representative clones for KIAA0546 with ef04555. (2003/4/2)
Features of the cloned cDNA sequence

Length: 7597 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 1655 bp
Genome contig ID gi89161190r_70189745
PolyA signal sequence
Flanking genome sequence
(100000 - 99951)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 12 r 70289745 70343866 34 99.9 Perfect prediction
Features of the protein sequence

Length: 1919 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
EAW97263 0 100.0 proline/serine-...
Homo sapiens
O60293 0 99.9 Zinc finger C3H...
Homo sapiens
XP_509222 0 99.8 proline/serine-...
Pan troglodytes
XP_001117507 0 99.1 hypothetical pr...
Macaca mulatta
EAW97261 0 100.0 proline/serine-...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMSmart IPR003107 1390 1422 SM00386 RNA-processing protein
IPR003107 1424 1455 SM00386 RNA-processing protein
IPR003107 1659 1691 SM00386 RNA-processing protein
IPR003107 1768 1803 SM00386 RNA-processing protein
ProfileScan IPR013026 1370 1443 PS50293 Tetratricopeptide region
IPR013026 1611 1678 PS50293 Tetratricopeptide region
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 12
Experimental conditions
Panel name GeneBridge 4
PCR product length 154 (0.7k) bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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