Gene/Protein Characteristic Table for KIAA0375
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK00519
Accession No AB002373
Description RUN and SH3 domain containing 2, transcript variant 2
Clone name hh00360s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5216 bp)
Predicted protein sequence (1540 aa)
Flexi ORF Clone FXC00519
Source Human adult brain
Rouge ID mKIAA0375 by Kazusa Mouse cDNA Project
Note We replaced hh00360, former representative clones for KIAA0375 with hh00360s1. (2002/12/27)
Features of the cloned cDNA sequence
Description

Length: 5216 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 510 bp
Genome contig ID gi89161216f_35380124
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
ATTATACCTATTAATAAAAAAGGTGCTCAGCCTCC
Flanking genome sequence
(171767 - 171816)
----+----*----+----*----+----*----+----*----+----*
AAACCATTTTCTCTTTGTGTTCCCCCACCCTCCCACCCTCCCACCCACCT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 9 f 35480120 35551889 12 99.6 Terminal No-hit
Features of the protein sequence
Description

Length: 1540 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q8N2Y8 0 100.0 Iporin; Interac...
Homo sapiens
CAH70650 0 99.9 RUN and SH3 dom...
Homo sapiens
XP_001089960 0 97.8 RUN and SH3 dom...
Macaca mulatta
AAI41187 0 87.2 Rusc2 protein [...
Mus musculus
EDL02482 0 86.9 RUN and SH3 dom...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR001452 1476 1524 PD000066 Src homology-3
FPrintScan IPR001452 1488 1503 PR00452 Src homology-3
IPR001452 1516 1528 PR00452 Src homology-3
HMMPfam IPR004012 1063 1199 PF02759 RUN
IPR011511 1475 1528 PF07653 Variant SH3
HMMSmart IPR004012 1129 1197 SM00593 RUN
IPR001452 1474 1529 SM00326 Src homology-3
ProfileScan IPR004012 1055 1199 PS50826 RUN
IPR001452 1471 1530 PS50002 Src homology-3
Expression profile
Description

RT-PCR
Experimental conditions
Primer_f CCTCCTCCCTCTTCTGATGAC
Primer_r AAAGCCATCTACAGGGTTCCC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 9
Experimental conditions
Panel name GeneBridge 4
Primer_f CCTCCTCCCTCTTCTGATGAC
Primer_r AAAGCCATCTACAGGGTTCCC
PCR product length 129 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp