Gene/Protein Characteristic Table for KIAA0350
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Product ID ORK01071
Accession No AB002348
Description C-type lectin domain family 16, member A, transcript variant 1
Clone name hg01945
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (6786 bp)
Predicted protein sequence (1062 aa)
Flexi ORF Clone FXC01071
Source Human adult brain
Rouge ID mKIAA0350 by Kazusa Mouse cDNA Project
Note We replaced hg01581, former representative clones for KIAA0350 with hg01945. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 6786 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning Warning
Integrity of 3' end
Length of 3'UTR 3491 bp
Genome contig ID gi51511732f_10845943
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
AAATTTAAACTTGGCAATAAAAGAGAAAAAAAGTT
Flanking genome sequence
(337598 - 337647)
----+----*----+----*----+----*----+----*----+----*
ACCAAGAATGTAGCGTGCTGCTCCTGGGGGCTGTGGCAGGAGGCCGTGGC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 16 f 10945943 11183539 23 100.0 Perfect prediction
Features of the protein sequence
Description

Length: 1062 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_001104364 0 97.3 similar to CG12...
Macaca mulatta
XP_871847 0 93.1 similar to Prot...
Bos taurus
BAE42005 0 94.5 unnamed protein...
Mus musculus
BAE33184 0 94.1 unnamed protein...
Mus musculus
CAG02693 1e-209 65.4 unnamed protein...
Tetraodon nigro...
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
ScanRegExp IPR001304 575 597 PS00615 C-type lectin
Expression profile
Description

RT-PCR
RT-PCR-ELISA
Experimental conditions
Primer_f TTCCAGTTTTCATTTCCACCC
Primer_r TTGTCCCAGTGAGAACCGAGG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 16
Experimental conditions
Panel name GeneBridge 4
Primer_f TTCCAGTTTTCATTTCCACCC
Primer_r TTGTCCCAGTGAGAACCGAGG
PCR product length 137 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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