Gene/Protein Characteristic Table for KIAA0156
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Product ID ORK00031
Accession No D63879
Description squamous cell carcinoma antigen recognized by T cells 3
Clone name ha03253
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (3660 bp)
Predicted protein sequence (963 aa)
Flexi ORF Clone FXC00031
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0156 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3660 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 768 bp
Genome contig ID gi89161190r_107340596
PolyA signal sequence
(ATTAAA,-20)
+----*----+----*----+----*----+----
TCCCCATTTAGCTTTATTAAACTGACGTTCTCTTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAACTTCTTGCTGAATGGTACTCAGATGTGCATTCACATACAGATGTGT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 12 r 107440596 107479060 19 99.9 Perfect prediction
Features of the protein sequence
Description

Length: 963 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAF82898 0 99.9 unnamed protein...
Homo sapiens
XP_001163755 0 99.8 squamous cell c...
Pan troglodytes
XP_001102668 0 98.7 similar to squa...
Macaca mulatta
XP_001163716 0 99.8 squamous cell c...
Pan troglodytes
XP_001102488 0 98.7 similar to squa...
Macaca mulatta
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000504 706 777 PF00076 RNA recognition motif
IPR000504 803 873 PF00076 RNA recognition motif
IPR008669 942 963 PF05391 Lsm interaction
HMMSmart IPR003107 126 158 SM00386 RNA-processing protein
IPR003107 164 195 SM00386 RNA-processing protein
IPR003107 201 237 SM00386 RNA-processing protein
IPR003107 324 356 SM00386 RNA-processing protein
IPR003107 359 391 SM00386 RNA-processing protein
IPR003107 394 430 SM00386 RNA-processing protein
IPR003107 487 520 SM00386 RNA-processing protein
IPR000504 705 778 SM00360 RNA recognition motif
IPR000504 802 874 SM00360 RNA recognition motif
ProfileScan IPR000504 704 782 PS50102 RNA recognition motif
IPR000504 801 878 PS50102 RNA recognition motif
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 12
Experimental conditions
Panel name Stanford G3
Primer_f GCTAGGACAAGGAGGAAGGTG
Primer_r TACTCATCCCCATCGCTCTCG
PCR product length 116 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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