Gene/Protein Characteristic Table for KIAA0128
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Product ID ORK00023
Accession No D50918
Description septin 6, transcript variant I
Clone name ha03961
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (4612 bp)
Predicted protein sequence (424 aa)
Flexi ORF Clone FXC00023
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0128 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4612 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3335 bp
Genome contig ID gi89161218r_118534939
PolyA signal sequence
(ATTAAA,-18)
+----*----+----*----+----*----+----
ATATGTGCTTGTTTTTAATTAAAACAAGAAGCTTT
Flanking genome sequence
(258722 - 258673)
----+----*----+----*----+----*----+----*----+----*
ACAGGAAGTAGTGAATAGGAATGAGGCTGGAGAGGTAAGCAGACGCCAGA
Features of the protein sequence
Description

Length: 424 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAK98547 2.2e-142 100.0 SEPTIN6 type I ...
Homo sapiens
AAK98551 2.2e-142 100.0 SEPTIN6 type V ...
Homo sapiens
CAI41427 2.2e-142 100.0 septin 6 [Homo ...
Homo sapiens
Q14141 2.2e-142 100.0 Septin-6.
Homo sapiens
EAW89857 2.4e-142 100.0 septin 6, isofo...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D86957 5.8e-75 77.7 KIAA0202
AB023208 1.4e-27 44.4 KIAA0991
D63878 7.2e-27 41.1 KIAA0158
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR000038 142 195 PD002565 Cell division/GTP binding protein
HMMPfam IPR000038 36 309 PF00735 Cell division/GTP binding protein
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. X
Experimental conditions
Panel name Stanford G3
Primer_f CCTTAACCCAATGACCCAGTG
Primer_r CTACAGTGAGAAAAGCTACCC
PCR product length 194 bp
PCR conditions 95 °C15 sec62 °C120 sec30 cycles
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