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Gene/Protein Characteristic Table for FLJ00359

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Product ID	ORK06164
Accession No	AK090439
Clone name	sh03991
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5833 bp) Predicted protein sequence (1056 aa)
Source	Human spleen
Rouge ID	mFLJ00359 by Kazusa Mouse cDNA Project

Length: 5833 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1056 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001611	599	612	PR00019	Leucine-rich repeat
	IPR001611	758	771	PR00019	Leucine-rich repeat
HMMPfam	IPR007111	1	110	PF05729	NACHT nucleoside triphosphatase
	IPR001611	470	494	PF00560	Leucine-rich repeat
	IPR001611	498	521	PF00560	Leucine-rich repeat
	IPR001611	598	625	PF00560	Leucine-rich repeat
	IPR001611	760	787	PF00560	Leucine-rich repeat
HMMSmart	IPR003590	440	467	SM00368	Leucine-rich repeat
	IPR003590	496	519	SM00368	Leucine-rich repeat
	IPR003590	596	623	SM00368	Leucine-rich repeat
	IPR003590	628	651	SM00368	Leucine-rich repeat
	IPR003590	728	757	SM00368	Leucine-rich repeat
	IPR003590	758	785	SM00368	Leucine-rich repeat
	IPR003590	832	860	SM00368	Leucine-rich repeat
	IPR003590	969	996	SM00368	Leucine-rich repeat
	IPR003590	1003	1024	SM00368	Leucine-rich repeat
ProfileScan	IPR007111	1	76	PS50837	NACHT nucleoside triphosphatase
	IPR007091	421	504	PS50503	Leucine-rich repeat
	IPR007091	577	660	PS50503	Leucine-rich repeat
	NULL	688	1022	PS50319	NULL

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	636	GLSVAGVHCVLRAVSACWTLAEL	658	PRIMARY	23

Experimental conditions

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