Gene/Protein Characteristic Table for FLJ00268
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Product ID ORK07709
Accession No AK160367
Clone name sj05723
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4710 bp)
Predicted protein sequence (695 aa)
Source Human spleen
Rouge ID mFLJ00268 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4710 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Features of the protein sequence
Description

Length: 695 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAD18710 0 100.0 FLJ00268 protei...
Homo sapiens
EAW61352 5e-135 66.0 hCG2040574 [Hom...
Homo sapiens
XP_001093501 3.5e-99 76.2 similar to dele...
Macaca mulatta
XP_001926649 1e-96 67.6 similar to scav...
Sus scrofa
XP_597136 2.9e-93 49.4 similar to scav...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB058725 2.5e-07 42.2 KIAA1822
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001190 35 126 PF00530 Speract/scavenger receptor
IPR001190 131 228 PF00530 Speract/scavenger receptor
IPR001190 237 334 PF00530 Speract/scavenger receptor
IPR001190 362 448 PF00530 Speract/scavenger receptor
HMMSmart IPR001190 32 126 SM00202 Speract/scavenger receptor
IPR001190 128 228 SM00202 Speract/scavenger receptor
IPR001190 234 334 SM00202 Speract/scavenger receptor
IPR001190 353 461 SM00202 Speract/scavenger receptor
ProfileScan IPR001190 32 126 PS50287 Speract/scavenger receptor
IPR001190 128 228 PS50287 Speract/scavenger receptor
IPR001190 234 334 PS50287 Speract/scavenger receptor
IPR001190 355 408 PS50287 Speract/scavenger receptor
NULL 583 686 PS50323 NULL
ScanRegExp IPR000408 226 236 PS00626 Regulator of chromosome condensation
Experimental conditions
Primer_f
Primer_r
PCR conditions test
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