BB938230 ( RCC11456 )

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[1][TOP]
>UniRef100_A7PAG7 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7PAG7_VITVI
          Length = 1035

 Score =  159 bits (403), Expect = 9e-38
 Identities = 81/132 (61%), Positives = 102/132 (77%), Gaps = 6/132 (4%)
 Frame = +2

Query: 161 KEVYAPDEEVKELLKEMEKEEKRK-NYEVRWN-----GMTEVKYKELRKRQVKIETEVWE 322
           +E  +  +E++ELL EM+KEEKR+ N++ R       GM + +Y  LR+RQVKIETE WE
Sbjct: 151 EEDVSASDEIQELLGEMKKEEKRQVNFKRREKLKMERGMEQGRYLRLRRRQVKIETEAWE 210

Query: 323 EAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYF 502
            AAKEY++LL DMCEQKLAPNLPYMKSLFLGWFEPL+DAI KEQE+ + GK +  YAPYF
Sbjct: 211 LAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYF 270

Query: 503 LQLPPEKMAIIT 538
            QLP + M++IT
Sbjct: 271 DQLPADMMSVIT 282

[2][TOP]
>UniRef100_B9T5S7 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9T5S7_RICCO
          Length = 395

 Score =  159 bits (401), Expect = 2e-37
 Identities = 79/121 (65%), Positives = 95/121 (78%), Gaps = 2/121 (1%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKRKNYEVRWN--GMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLT 355
           EEV+ELL+EM +EE R+   +R    GM   KY+ L+KRQVKIETE WE A KEY++LL 
Sbjct: 125 EEVQELLQEMRREEAREKELIRRKERGMGSKKYQMLKKRQVKIETEAWEWAVKEYKELLM 184

Query: 356 DMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           DMCE+KLAPNLPYMKSLFLGWFEP +DAI KEQE+ + GK RT +APYF QLP + MA+I
Sbjct: 185 DMCEKKLAPNLPYMKSLFLGWFEPFRDAILKEQELIRVGKNRTAFAPYFDQLPADMMAVI 244

Query: 536 T 538
           T
Sbjct: 245 T 245

[3][TOP]
>UniRef100_Q1KUU5 Putative uncharacterized protein n=1 Tax=Cleome spinosa
           RepID=Q1KUU5_9ROSI
          Length = 1021

 Score =  158 bits (399), Expect = 3e-37
 Identities = 77/125 (61%), Positives = 99/125 (79%), Gaps = 6/125 (4%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKRKNYEVRWN------GMTEVKYKELRKRQVKIETEVWEEAAKEYR 343
           +EV+ELL+EM+KEEK++   +R        GM E KY+ L++RQVKIETE WE+AA EY+
Sbjct: 153 DEVQELLREMKKEEKKEKVHLRRVKRQEDLGMLEKKYQSLKRRQVKIETEAWEKAANEYK 212

Query: 344 DLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEK 523
           +LLTDMCEQKLAPNLPY+KSLFLGWFEPL++AI K+QE+Y+ GK R  YA Y  QLP + 
Sbjct: 213 ELLTDMCEQKLAPNLPYVKSLFLGWFEPLREAIAKDQELYRLGKNRANYAYYIDQLPADM 272

Query: 524 MAIIT 538
           +A+IT
Sbjct: 273 IAVIT 277

[4][TOP]
>UniRef100_Q8VWF8 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial n=2
           Tax=Nicotiana sylvestris RepID=RPOT2_NICSY
          Length = 1020

 Score =  153 bits (387), Expect = 7e-36
 Identities = 74/125 (59%), Positives = 94/125 (75%), Gaps = 6/125 (4%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEK------RKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYR 343
           +EV ELL E++KEEK      R+   +  +GM   KY+ L++RQVK+ETE WE+AAKEY+
Sbjct: 146 DEVHELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYK 205

Query: 344 DLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEK 523
           +LL DMCEQKLAPNLPY+KSLFLGWFEPL+D I +EQE+   GK +  YA YF QLP + 
Sbjct: 206 ELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADM 265

Query: 524 MAIIT 538
           MA+IT
Sbjct: 266 MAVIT 270

[5][TOP]
>UniRef100_Q9LFV6 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial n=1
           Tax=Arabidopsis thaliana RepID=RPOT2_ARATH
          Length = 1011

 Score =  153 bits (387), Expect = 7e-36
 Identities = 80/139 (57%), Positives = 101/139 (72%), Gaps = 11/139 (7%)
 Frame = +2

Query: 155 ATKEVYAPD----EEVKELLKEMEKEEKRKNYEVRWN-------GMTEVKYKELRKRQVK 301
           A +EV + D     EV ELLKEM+KE+KR+++   W        GM   K++ L +RQVK
Sbjct: 125 AEEEVLSTDVEEEPEVDELLKEMKKEKKRESHR-SWRMKKQDQFGMGRTKFQNLWRRQVK 183

Query: 302 IETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKR 481
           IETE WE AA EY +LLTDMCEQKLAPNLPY+KSLFLGWFEPL+DAI K+QE+Y+ GK +
Sbjct: 184 IETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSK 243

Query: 482 TIYAPYFLQLPPEKMAIIT 538
             YA Y  QLP +K+++IT
Sbjct: 244 ATYAHYLDQLPADKISVIT 262

[6][TOP]
>UniRef100_A7PNA5 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7PNA5_VITVI
          Length = 978

 Score =  152 bits (384), Expect = 1e-35
 Identities = 72/128 (56%), Positives = 97/128 (75%)
 Frame = +2

Query: 155 ATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAK 334
           A++E  +  +EV+EL++E+ K +K +       G+ + K+  LR+RQ+K+ETE WEEAAK
Sbjct: 101 ASEEDMSGVDEVQELVEEVNKGDKLEKQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAK 160

Query: 335 EYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLP 514
           EYR+LL+DMCEQKLAPNLPY+KSLFLGWFEPL+D I  EQ++ + GK R  YAPYF  LP
Sbjct: 161 EYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLP 220

Query: 515 PEKMAIIT 538
            + MA+IT
Sbjct: 221 ADMMAVIT 228

[7][TOP]
>UniRef100_Q8L6J3 DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial n=1
           Tax=Nicotiana tabacum RepID=RPO2B_TOBAC
          Length = 1021

 Score =  152 bits (383), Expect = 2e-35
 Identities = 73/125 (58%), Positives = 94/125 (75%), Gaps = 6/125 (4%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEK------RKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYR 343
           +EV+ELL E++KEEK      R+   +  +GM   KY+ L++RQVK+ETE WE+AAKEY+
Sbjct: 147 DEVQELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYK 206

Query: 344 DLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEK 523
           +LL DMCEQKLAPNLPY+KSLFLGWFEPL+D I +EQE+   GK +  YA Y  QLP + 
Sbjct: 207 ELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADM 266

Query: 524 MAIIT 538
           MA+IT
Sbjct: 267 MAVIT 271

[8][TOP]
>UniRef100_Q8L6J5 DNA-directed RNA polymerase 1B, mitochondrial n=1 Tax=Nicotiana
           tabacum RepID=RPO1B_TOBAC
          Length = 1002

 Score =  151 bits (382), Expect = 2e-35
 Identities = 75/125 (60%), Positives = 95/125 (76%), Gaps = 6/125 (4%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEK--RKNYEVRW----NGMTEVKYKELRKRQVKIETEVWEEAAKEYR 343
           +E++EL++EM+KE +  + N + +      GM   KY  LR+RQ+K+ETE WEEAAKEY+
Sbjct: 130 DEIQELIEEMDKENEALKANLQPKQPKTIGGMGVGKYNFLRRRQIKVETEAWEEAAKEYQ 189

Query: 344 DLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEK 523
           +LL DMCEQKLAPNLPYMKSLFLGWFEPL+DAI  EQ++   GK R  YAP+F QLP E 
Sbjct: 190 ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEM 249

Query: 524 MAIIT 538
           MA+IT
Sbjct: 250 MAVIT 254

[9][TOP]
>UniRef100_Q93Y94 DNA-directed RNA polymerase 1, mitochondrial n=1 Tax=Nicotiana
           sylvestris RepID=RPOT1_NICSY
          Length = 1002

 Score =  150 bits (380), Expect = 4e-35
 Identities = 75/125 (60%), Positives = 94/125 (75%), Gaps = 6/125 (4%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEK--RKNYEVRW----NGMTEVKYKELRKRQVKIETEVWEEAAKEYR 343
           +E++EL++EM KE +  + N + +      GM   KY  LR+RQ+K+ETE WEEAAKEY+
Sbjct: 130 DEIQELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQ 189

Query: 344 DLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEK 523
           +LL DMCEQKLAPNLPYMKSLFLGWFEPL+DAI  EQ++   GK R  YAP+F QLP E 
Sbjct: 190 ELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEM 249

Query: 524 MAIIT 538
           MA+IT
Sbjct: 250 MAVIT 254

[10][TOP]
>UniRef100_P93661 DNA-directed RNA polymerase n=1 Tax=Chenopodium album
           RepID=P93661_CHEAL
          Length = 988

 Score =  145 bits (366), Expect = 2e-33
 Identities = 71/127 (55%), Positives = 91/127 (71%), Gaps = 7/127 (5%)
 Frame = +2

Query: 179 DEEVKELLKEMEKEEKRKNYEVRWN-------GMTEVKYKELRKRQVKIETEVWEEAAKE 337
           D+E++EL+ E+ K E+ K   +R         GMT  +Y  LRKRQ+K+ETE W EAA+E
Sbjct: 113 DDEIRELVDEINKLERVKPQSIRRKEPINMVAGMTAGRYNVLRKRQIKVETEAWNEAARE 172

Query: 338 YRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPP 517
           Y++LL DMCEQKLAPNLPYMKSLFLGWFEPLKDAI+  QE  + G+ R +Y   F +LP 
Sbjct: 173 YQELLADMCEQKLAPNLPYMKSLFLGWFEPLKDAIKAHQEACKVGRNRPLYGECFDELPA 232

Query: 518 EKMAIIT 538
           + MA+IT
Sbjct: 233 DMMAVIT 239

[11][TOP]
>UniRef100_B9NDR8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
           RepID=B9NDR8_POPTR
          Length = 201

 Score =  141 bits (356), Expect = 3e-32
 Identities = 73/120 (60%), Positives = 88/120 (73%), Gaps = 2/120 (1%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKR-KNYEVRWN-GMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLT 355
           +EV+EL  EM KEE+      +R N G+   K++ LR+RQVKIE E WE A KEY++LL 
Sbjct: 48  DEVQELQPEMRKEEEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLK 107

Query: 356 DMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           DMCE KLAPNLPYMKSLFLGWFEP  DAI KEQE+ + GK R  YAPYF  LP +KM++I
Sbjct: 108 DMCEHKLAPNLPYMKSLFLGWFEPFTDAIAKEQELIRMGKSRQGYAPYFDLLPADKMSVI 167

[12][TOP]
>UniRef100_Q52GZ4 DNA-directed RNA polymerase n=1 Tax=Spinacia oleracea
           RepID=Q52GZ4_SPIOL
          Length = 1036

 Score =  140 bits (354), Expect = 4e-32
 Identities = 68/126 (53%), Positives = 91/126 (72%), Gaps = 7/126 (5%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKRKNYEVRWN-------GMTEVKYKELRKRQVKIETEVWEEAAKEY 340
           +E++EL++EM KEEKR  +            GM   KY++LR RQ+K+ETE W++AA EY
Sbjct: 159 DEIQELVEEMRKEEKRAKWRESHQRQQKMVAGMPLYKYQKLRNRQIKLETESWQQAANEY 218

Query: 341 RDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPE 520
           ++LL DMC+ KLAPNLPY+KSLFLGWFEP +D+I ++QE+ + GK R  Y  YF QLP +
Sbjct: 219 KELLADMCKLKLAPNLPYVKSLFLGWFEPFRDSIIEDQELIRQGKCRGAYGTYFDQLPAD 278

Query: 521 KMAIIT 538
            MAIIT
Sbjct: 279 MMAIIT 284

[13][TOP]
>UniRef100_B9N9Q4 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N9Q4_POPTR
          Length = 381

 Score =  139 bits (351), Expect = 1e-31
 Identities = 72/120 (60%), Positives = 89/120 (74%), Gaps = 2/120 (1%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKR-KNYEVRWN-GMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLT 355
           +EV+EL  EM KEE+      +R N G+   K++ LR+RQVKIE E WE A KEY++LL 
Sbjct: 50  DEVQELQPEMRKEEEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLK 109

Query: 356 DMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           DMCE KLAPNLPYMKSLFLGWFEP +DAI KEQE+ ++GK R  YA YF  LP +KM++I
Sbjct: 110 DMCEHKLAPNLPYMKSLFLGWFEPFRDAIAKEQELIRTGKSRQGYALYFDLLPADKMSVI 169

[14][TOP]
>UniRef100_B9RLF2 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
           RepID=B9RLF2_RICCO
          Length = 997

 Score =  137 bits (346), Expect = 4e-31
 Identities = 74/153 (48%), Positives = 98/153 (64%), Gaps = 18/153 (11%)
 Frame = +2

Query: 134 FKLKNEAATKEVYAPDE-------EVKELLKEMEKEEKRKNYEVRWN-----------GM 259
           FK    AA + + + DE       E++E ++E+ K  K+ +   R             GM
Sbjct: 85  FKGYATAAAQVIASTDESDFSGCDELQEQIEEINKHHKKMDAHFRQQQQQQQRKKTIAGM 144

Query: 260 TEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDA 439
              KY  L+KRQ+K+ETE WEEAA+EY++LLTDMCEQKLAPNLPY+KSLFLGWFEPL+DA
Sbjct: 145 GIGKYTILKKRQIKMETEAWEEAAREYQELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDA 204

Query: 440 IEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           I KEQE+ +    +  + PYF  LP + MA+IT
Sbjct: 205 IAKEQELSREKNNKLSHGPYFDALPADMMAVIT 237

[15][TOP]
>UniRef100_B9N7P2 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
           RepID=B9N7P2_POPTR
          Length = 847

 Score =  135 bits (341), Expect = 1e-30
 Identities = 63/90 (70%), Positives = 73/90 (81%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           KYK LR+RQVKIE E WE+AAKEY++LL DMCE KLAPNLPYMK LFLGWFEPL+DAI K
Sbjct: 5   KYKALRRRQVKIEAEAWEQAAKEYKELLKDMCEHKLAPNLPYMKGLFLGWFEPLRDAIAK 64

Query: 449 EQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           EQE  + GK R  Y+PYF  LP + M++IT
Sbjct: 65  EQESIRRGKTRPDYSPYFDLLPADMMSVIT 94

[16][TOP]
>UniRef100_Q8RXB9 At1g68990/T6L1_17 n=1 Tax=Arabidopsis thaliana RepID=Q8RXB9_ARATH
          Length = 305

 Score =  132 bits (333), Expect = 1e-29
 Identities = 67/128 (52%), Positives = 90/128 (70%), Gaps = 9/128 (7%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKRKNYEVRWN---------GMTEVKYKELRKRQVKIETEVWEEAAK 334
           +EV EL+ EMEKE +R   + R           GM   K+  L++RQVK+ETE WE AA+
Sbjct: 93  DEVNELITEMEKETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAAR 152

Query: 335 EYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLP 514
           E R++L DMCEQKLAPNLPYMKSLFLGWFEP+++AI+ + + ++  K +  YAP+  QLP
Sbjct: 153 ECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLP 212

Query: 515 PEKMAIIT 538
            +KMA+IT
Sbjct: 213 ADKMAVIT 220

[17][TOP]
>UniRef100_P92969 DNA-directed RNA polymerase 1, mitochondrial n=1 Tax=Arabidopsis
           thaliana RepID=RPOT1_ARATH
          Length = 976

 Score =  132 bits (333), Expect = 1e-29
 Identities = 67/128 (52%), Positives = 90/128 (70%), Gaps = 9/128 (7%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKRKNYEVRWN---------GMTEVKYKELRKRQVKIETEVWEEAAK 334
           +EV EL+ EMEKE +R   + R           GM   K+  L++RQVK+ETE WE AA+
Sbjct: 93  DEVNELITEMEKETERIRKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAAR 152

Query: 335 EYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLP 514
           E R++L DMCEQKLAPNLPYMKSLFLGWFEP+++AI+ + + ++  K +  YAP+  QLP
Sbjct: 153 ECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLP 212

Query: 515 PEKMAIIT 538
            +KMA+IT
Sbjct: 213 ADKMAVIT 220

[18][TOP]
>UniRef100_C5X2G2 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5X2G2_SORBI
          Length = 976

 Score =  132 bits (332), Expect = 2e-29
 Identities = 60/96 (62%), Positives = 74/96 (77%)
 Frame = +2

Query: 251 NGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPL 430
           +GMT  +Y  LR+RQ+++ETE WE+AAKEYR+LL DMCEQKLAPNLPY+KSLFLGWFEPL
Sbjct: 128 HGMTYHRYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPL 187

Query: 431 KDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           +D I  EQE+      R  + PYF  LP + MA+IT
Sbjct: 188 RDQIVTEQELVADPGSRASHGPYFNMLPADMMAVIT 223

[19][TOP]
>UniRef100_B9N9P2 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N9P2_POPTR
          Length = 135

 Score =  132 bits (331), Expect = 2e-29
 Identities = 61/89 (68%), Positives = 72/89 (80%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           KY+ LR+RQVKIE E WE+A KEY++LL DMCE KLAPNLPYMKSLFLGWFEP  DAI K
Sbjct: 9   KYRVLRRRQVKIEAEAWEQATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFTDAIAK 68

Query: 449 EQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           EQE+ ++GK R  YA YF  LP +KM++I
Sbjct: 69  EQELIRTGKSRQGYASYFDLLPADKMSVI 97

[20][TOP]
>UniRef100_B9N6S4 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N6S4_POPTR
          Length = 397

 Score =  132 bits (331), Expect = 2e-29
 Identities = 62/94 (65%), Positives = 74/94 (78%)
 Frame = +2

Query: 254 GMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLK 433
           G+   K++ LR+RQVKIE E WE A KEY++LL DMCE KLAPNLPYMKSLFLGWFEP  
Sbjct: 126 GIGSRKHRVLRRRQVKIEAEAWELATKEYKELLKDMCEHKLAPNLPYMKSLFLGWFEPFT 185

Query: 434 DAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           DAI KEQE+ ++GK R  YAPYF  LP +KM++I
Sbjct: 186 DAIAKEQELIRTGKSRQGYAPYFDLLPADKMSVI 219

[21][TOP]
>UniRef100_Q9XF15 DNA-directed RNA polymerase n=1 Tax=Zea mays RepID=Q9XF15_MAIZE
          Length = 975

 Score =  130 bits (326), Expect = 8e-29
 Identities = 59/96 (61%), Positives = 73/96 (76%)
 Frame = +2

Query: 251 NGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPL 430
           +GMT  +Y  LR+RQ++IETE WE+AA EYR+LL DMCEQKLAPNLPY+KSLFLGWFEPL
Sbjct: 128 HGMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPL 187

Query: 431 KDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           +D I  EQE+      R  + P+F  LP + MA+IT
Sbjct: 188 RDQIATEQELVADPGSRASHGPFFSMLPADMMAVIT 223

[22][TOP]
>UniRef100_B4YPU8 DNA-directed RNA polymerase n=1 Tax=Brassica oleracea var.
           alboglabra RepID=B4YPU8_BRAOA
          Length = 951

 Score =  129 bits (325), Expect = 1e-28
 Identities = 66/128 (51%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKRKNYEVRWN---------GMTEVKYKELRKRQVKIETEVWEEAAK 334
           +EV EL+  MEKE +R   + R           GM   KY  L++RQVK+ETE WE+AAK
Sbjct: 85  DEVNELMSAMEKETERVRKKARLAAKQPMKVVAGMGAQKYYSLKQRQVKLETEEWEKAAK 144

Query: 335 EYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLP 514
           E ++++ DMCEQKLAPNLPY+KSLFLGWFEPL+DAI+ + + ++  K +  YA Y  QLP
Sbjct: 145 ECQEIIEDMCEQKLAPNLPYVKSLFLGWFEPLRDAIQADLDGFKVKKGKIPYASYMEQLP 204

Query: 515 PEKMAIIT 538
            + MA+IT
Sbjct: 205 ADMMAVIT 212

[23][TOP]
>UniRef100_Q70BU3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Hordeum vulgare
           RepID=Q70BU3_HORVU
          Length = 862

 Score =  127 bits (320), Expect = 4e-28
 Identities = 60/96 (62%), Positives = 73/96 (76%)
 Frame = +2

Query: 251 NGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPL 430
           +G+   KY  LR+RQ++IETE WE+AAKEYR+LL DMCE KLAPNLPY+KSLFLGWFEPL
Sbjct: 17  HGIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPL 76

Query: 431 KDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           +D I  EQE+      R  +APYF  LP + MA+IT
Sbjct: 77  RDQIIAEQELVGERGTRASHAPYFNMLPADMMAVIT 112

[24][TOP]
>UniRef100_Q9MQV1 DNA-directed RNA polymerase n=1 Tax=Triticum aestivum
           RepID=Q9MQV1_WHEAT
          Length = 1005

 Score =  126 bits (316), Expect = 1e-27
 Identities = 59/96 (61%), Positives = 72/96 (75%)
 Frame = +2

Query: 251 NGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPL 430
           +G+   KY  LR+RQ++IETE WE+AAKEYR+LL DMCE KLAPNLPY+KSLFL WFEPL
Sbjct: 159 HGIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPL 218

Query: 431 KDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           +D I  EQE+      R  +APYF  LP + MA+IT
Sbjct: 219 RDQIIAEQELVSERGTRASHAPYFNMLPADMMAVIT 254

[25][TOP]
>UniRef100_Q84LK6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa Japonica Group
           RepID=Q84LK6_ORYSJ
          Length = 1017

 Score =  122 bits (307), Expect = 1e-26
 Identities = 58/96 (60%), Positives = 73/96 (76%)
 Frame = +2

Query: 251 NGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPL 430
           +G+   KY  LR+RQ++IETE WE+AA+EYR+LL DMC+QKLAPNLPY+KSLFLGWFEPL
Sbjct: 170 HGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPL 229

Query: 431 KDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           +D I  EQE+      R  +A YF  LP + MA+IT
Sbjct: 230 RDQIIAEQELVGERGARASHARYFNMLPADMMAVIT 265

[26][TOP]
>UniRef100_Q6K326 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=Q6K326_ORYSJ
          Length = 951

 Score =  122 bits (307), Expect = 1e-26
 Identities = 58/96 (60%), Positives = 73/96 (76%)
 Frame = +2

Query: 251 NGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPL 430
           +G+   KY  LR+RQ++IETE WE+AA+EYR+LL DMC+QKLAPNLPY+KSLFLGWFEPL
Sbjct: 170 HGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPL 229

Query: 431 KDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           +D I  EQE+      R  +A YF  LP + MA+IT
Sbjct: 230 RDQIIAEQELVGERGARASHARYFNMLPADMMAVIT 265

[27][TOP]
>UniRef100_A2YYV2 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
           RepID=A2YYV2_ORYSI
          Length = 845

 Score =  122 bits (307), Expect = 1e-26
 Identities = 58/96 (60%), Positives = 73/96 (76%)
 Frame = +2

Query: 251 NGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPL 430
           +G+   KY  LR+RQ++IETE WE+AA+EYR+LL DMC+QKLAPNLPY+KSLFLGWFEPL
Sbjct: 112 HGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPL 171

Query: 431 KDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           +D I  EQE+      R  +A YF  LP + MA+IT
Sbjct: 172 RDQIIAEQELVGERGARASHARYFNMLPADMMAVIT 207

[28][TOP]
>UniRef100_B9IMA6 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
           RepID=B9IMA6_POPTR
          Length = 882

 Score =  119 bits (298), Expect = 1e-25
 Identities = 55/102 (53%), Positives = 76/102 (74%)
 Frame = +2

Query: 230 KNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLF 409
           K  +V +  + + KY  LR+RQ++ ETE WE  A EYR L+ +MCE+KLAPNLPY+K L 
Sbjct: 31  KKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYRGLVREMCERKLAPNLPYVKGLL 90

Query: 410 LGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           LGWFEPLK+AIEKEQ+M +S K+++ ++P    LP +KMA+I
Sbjct: 91  LGWFEPLKEAIEKEQKMEKSKKQKSAFSPNIELLPADKMAVI 132

[29][TOP]
>UniRef100_B9HIV5 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
           RepID=B9HIV5_POPTR
          Length = 877

 Score =  118 bits (295), Expect = 3e-25
 Identities = 60/119 (50%), Positives = 86/119 (72%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDM 361
           E+V +  ++ME + + +  ++   GM   KY  L++RQ+K+ETE WE+AA+EY+++L DM
Sbjct: 2   EQVNKHFQKMEPQFRPQEKKMV-AGMGIGKYAILKRRQIKMETEAWEQAAQEYQEMLEDM 60

Query: 362 CEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           CEQKLAPNLPY+KSLFLGWFEPL+DAI  EQE+ +    R  +  +F  LP + MA+IT
Sbjct: 61  CEQKLAPNLPYVKSLFLGWFEPLRDAIVAEQELCKR-NLRVSHRAHFSDLPADMMAVIT 118

[30][TOP]
>UniRef100_B9NFY8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
           RepID=B9NFY8_POPTR
          Length = 160

 Score =  117 bits (292), Expect = 7e-25
 Identities = 53/102 (51%), Positives = 77/102 (75%)
 Frame = +2

Query: 230 KNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLF 409
           K  ++    + + KY  LR+RQ++ ETE WE  A+EY  L+ +MCE+KLAPNLPY+KSLF
Sbjct: 25  KKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLF 84

Query: 410 LGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           LGWFEPLK+AIE+EQ++ +S K+++ ++P    LP +KMA+I
Sbjct: 85  LGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLPADKMAVI 126

[31][TOP]
>UniRef100_B9HB51 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
           RepID=B9HB51_POPTR
          Length = 982

 Score =  117 bits (292), Expect = 7e-25
 Identities = 53/102 (51%), Positives = 77/102 (75%)
 Frame = +2

Query: 230 KNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLF 409
           K  ++    + + KY  LR+RQ++ ETE WE  A+EY  L+ +MCE+KLAPNLPY+KSLF
Sbjct: 131 KKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLF 190

Query: 410 LGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           LGWFEPLK+AIE+EQ++ +S K+++ ++P    LP +KMA+I
Sbjct: 191 LGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLPADKMAVI 232

[32][TOP]
>UniRef100_A5B3H8 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5B3H8_VITVI
          Length = 1312

 Score =  117 bits (292), Expect = 7e-25
 Identities = 53/102 (51%), Positives = 74/102 (72%)
 Frame = +2

Query: 230 KNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLF 409
           +N ++ +       Y  LR+RQVK ETE WE   +EYR++  +MCE+KLAPNLPY+K+LF
Sbjct: 129 QNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALF 188

Query: 410 LGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           LGWFEPL++AIEKEQ   ++ K++  YAP+   LP +KMA+I
Sbjct: 189 LGWFEPLREAIEKEQRAQRTKKQKAAYAPHIELLPADKMAVI 230

[33][TOP]
>UniRef100_B9HWT3 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
           RepID=B9HWT3_POPTR
          Length = 852

 Score =  116 bits (290), Expect = 1e-24
 Identities = 55/90 (61%), Positives = 70/90 (77%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           KY  L++RQVK+ETE WE+ A+EY+++L DMCEQKLAPNLPY+KSLFLGWFEPL+DAI  
Sbjct: 5   KYTILKRRQVKMETEAWEQTAREYQEMLEDMCEQKLAPNLPYVKSLFLGWFEPLRDAILA 64

Query: 449 EQEMYQSGKKRTIYAPYFLQLPPEKMAIIT 538
           EQE+ +    R  +  YF  LP + MA+IT
Sbjct: 65  EQELCKV-NSRVPHRAYFNDLPADMMAVIT 93

[34][TOP]
>UniRef100_Q84LK5 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=Q84LK5_ORYSJ
          Length = 953

 Score =  115 bits (289), Expect = 2e-24
 Identities = 59/136 (43%), Positives = 88/136 (64%)
 Frame = +2

Query: 128 DEFKLKNEAATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIE 307
           D +++  E    EV    E   E  +E E+E +R+    R     + +++ LR+RQVK E
Sbjct: 76  DSYQIPVEEQEVEVEVEVEVGVERERERERERERERERAR-----KAEHRRLRQRQVKAE 130

Query: 308 TEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTI 487
           TE W  AA EYR+L  +M +++LAP LPY+KSLFLGWFEPL+DAI ++QE+ +  + + +
Sbjct: 131 TEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHV 190

Query: 488 YAPYFLQLPPEKMAII 535
           YA Y L LP +K+A+I
Sbjct: 191 YAKYLLLLPADKVAVI 206

[35][TOP]
>UniRef100_A7PFM9 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
           RepID=A7PFM9_VITVI
          Length = 979

 Score =  115 bits (289), Expect = 2e-24
 Identities = 52/102 (50%), Positives = 74/102 (72%)
 Frame = +2

Query: 230 KNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLF 409
           +N ++ +       Y  LR+RQVK ETE WE   +EYR++  +MCE+KLAPNLPY+K+LF
Sbjct: 129 QNVKLEFRETERRNYGLLRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALF 188

Query: 410 LGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           LGWFEPL++AI+KEQ   ++ K++  YAP+   LP +KMA+I
Sbjct: 189 LGWFEPLREAIDKEQRAQRTKKQKAAYAPHIELLPADKMAVI 230

[36][TOP]
>UniRef100_B9SQY6 DNA-directed RNA polymerase 3B, chloroplast, putative n=1
           Tax=Ricinus communis RepID=B9SQY6_RICCO
          Length = 1000

 Score =  115 bits (288), Expect = 2e-24
 Identities = 56/120 (46%), Positives = 78/120 (65%)
 Frame = +2

Query: 176 PDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLT 355
           P++EVK   K++EK                 KY  LR+RQ++ ETE WE   +EY+ L+ 
Sbjct: 134 PNKEVKLEFKDIEKR----------------KYNLLRRRQIREETEAWERMVEEYKALVK 177

Query: 356 DMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           +MCE+KLAPNLPY+K LFLGWFEPLK+ I+ EQ + +S K +  +AP+   LP +KMA+I
Sbjct: 178 EMCERKLAPNLPYVKGLFLGWFEPLKEGIKSEQNLQRSKKNKAAFAPHIELLPADKMAVI 237

[37][TOP]
>UniRef100_Q8L6J1 DNA-directed RNA polymerase 3B, chloroplastic n=1 Tax=Nicotiana
           tabacum RepID=RPO3B_TOBAC
          Length = 977

 Score =  114 bits (286), Expect = 3e-24
 Identities = 58/145 (40%), Positives = 87/145 (60%)
 Frame = +2

Query: 101 EEREERRMIDEFKLKNEAATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKE 280
           +E  +R  I +    +      ++   ++V+ + +E  + E+R+ Y +            
Sbjct: 94  KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAM------------ 141

Query: 281 LRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEM 460
           LR+RQ+K ETE WE+  +EYR+L  +MCE+KLAPNLPY+K L LGWFEPL+ AIEKEQ  
Sbjct: 142 LRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNA 201

Query: 461 YQSGKKRTIYAPYFLQLPPEKMAII 535
             + K R  +AP+   LP +KMA+I
Sbjct: 202 ETTVKHRAAFAPHIDSLPADKMAVI 226

[38][TOP]
>UniRef100_P69243 DNA-directed RNA polymerase 3A, chloroplastic n=2 Tax=Nicotiana
           RepID=RPO3A_TOBAC
          Length = 977

 Score =  114 bits (286), Expect = 3e-24
 Identities = 58/145 (40%), Positives = 87/145 (60%)
 Frame = +2

Query: 101 EEREERRMIDEFKLKNEAATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKE 280
           +E  +R  I +    +      ++   ++V+ + +E  + E+R+ Y +            
Sbjct: 95  KESNKRVFIQDPPWVSSLFMNSLFVRAKQVQGVRREFREIERRRRYAM------------ 142

Query: 281 LRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEM 460
           LR+RQ+K ETE WE+  +EYR+L  +MCE+KLAPNLPY+K L LGWFEPL+ AIEKEQ  
Sbjct: 143 LRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNA 202

Query: 461 YQSGKKRTIYAPYFLQLPPEKMAII 535
             + K R  +AP+   LP +KMA+I
Sbjct: 203 ETTVKHRAAFAPHIDSLPADKMAVI 227

[39][TOP]
>UniRef100_B9NAV6 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NAV6_POPTR
          Length = 173

 Score =  113 bits (282), Expect = 1e-23
 Identities = 58/94 (61%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKR-KNYEVRWN-GMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLT 355
           +EV+EL  EM KEE+  +   +R N G+   K++ LR+RQVKIE E WE A KEY++LL 
Sbjct: 69  DEVQELQPEMRKEEEHFRRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLK 128

Query: 356 DMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQE 457
           DMCE  LAPNLPYMKSLFLGWFEP  DAIE+E E
Sbjct: 129 DMCEHNLAPNLPYMKSLFLGWFEPFTDAIEQETE 162

[40][TOP]
>UniRef100_A2YFP7 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Indica Group
           RepID=A2YFP7_ORYSI
          Length = 950

 Score =  112 bits (281), Expect = 1e-23
 Identities = 58/136 (42%), Positives = 87/136 (63%)
 Frame = +2

Query: 128 DEFKLKNEAATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIE 307
           D +++  E    EV        E  +E E+E +R+    R     + +++ LR+RQVK E
Sbjct: 48  DSYQIPVEEQEVEVEVGVGVGVERERERERERERERERAR-----KAEHRRLRQRQVKAE 102

Query: 308 TEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTI 487
           TE W  AA EYR+L  +M +++LAP LPY+KSLFLGWFEPL+DAI ++QE+ +  + + +
Sbjct: 103 TEAWARAADEYRELEREMLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHV 162

Query: 488 YAPYFLQLPPEKMAII 535
           YA Y L LP +K+A+I
Sbjct: 163 YAKYLLLLPADKVAVI 178

[41][TOP]
>UniRef100_B9FQ93 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
           RepID=B9FQ93_ORYSJ
          Length = 946

 Score =  112 bits (280), Expect = 2e-23
 Identities = 53/111 (47%), Positives = 79/111 (71%)
 Frame = +2

Query: 203 KEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAP 382
           +E E+E +R+    R     + +++ LR+RQVK ETE W  AA EYR+L  +M +++LAP
Sbjct: 69  RERERERERERERAR-----KAEHRRLRQRQVKAETEAWARAADEYRELEREMLDRRLAP 123

Query: 383 NLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
            LPY+KSLFLGWFEPL+DAI ++QE+ +  + + +YA Y L LP +K+A+I
Sbjct: 124 ALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVAVI 174

[42][TOP]
>UniRef100_Q6LAJ6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arabidopsis thaliana
           RepID=Q6LAJ6_ARATH
          Length = 282

 Score =  112 bits (279), Expect = 2e-23
 Identities = 53/91 (58%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           K+  LR+RQVK ETE WE    EYRDL  +MCE+ LAPNLPY+K +FLGWF+PLKD IE+
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217

Query: 449 EQEMY--QSGKKRTIYAPYFLQLPPEKMAII 535
           EQ++   +S K R  YAP+   LP +KMA+I
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVI 248

[43][TOP]
>UniRef100_Q3EBU8 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
           RepID=Q3EBU8_ARATH
          Length = 895

 Score =  112 bits (279), Expect = 2e-23
 Identities = 53/91 (58%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           K+  LR+RQVK ETE WE    EYRDL  +MCE+ LAPNLPY+K +FLGWF+PLKD IE+
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217

Query: 449 EQEMY--QSGKKRTIYAPYFLQLPPEKMAII 535
           EQ++   +S K R  YAP+   LP +KMA+I
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVI 248

[44][TOP]
>UniRef100_Q0WWN0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arabidopsis thaliana
           RepID=Q0WWN0_ARATH
          Length = 786

 Score =  112 bits (279), Expect = 2e-23
 Identities = 53/91 (58%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           K+  LR+RQVK ETE WE    EYRDL  +MCE+ LAPNLPY+K +FLGWF+PLKD IE+
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217

Query: 449 EQEMY--QSGKKRTIYAPYFLQLPPEKMAII 535
           EQ++   +S K R  YAP+   LP +KMA+I
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVI 248

[45][TOP]
>UniRef100_O24600 DNA-directed RNA polymerase 3, chloroplastic n=2 Tax=Arabidopsis
           thaliana RepID=RPOT3_ARATH
          Length = 993

 Score =  112 bits (279), Expect = 2e-23
 Identities = 53/91 (58%), Positives = 67/91 (73%), Gaps = 2/91 (2%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           K+  LR+RQVK ETE WE    EYRDL  +MCE+ LAPNLPY+K +FLGWF+PLKD IE+
Sbjct: 158 KFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGWFQPLKDVIER 217

Query: 449 EQEMY--QSGKKRTIYAPYFLQLPPEKMAII 535
           EQ++   +S K R  YAP+   LP +KMA+I
Sbjct: 218 EQKLQKNKSKKVRAAYAPHIELLPADKMAVI 248

[46][TOP]
>UniRef100_Q8SBD3 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens
           RepID=Q8SBD3_PHYPA
          Length = 1065

 Score =  111 bits (278), Expect = 3e-23
 Identities = 51/93 (54%), Positives = 69/93 (74%), Gaps = 3/93 (3%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           K +EL KRQVKIETE W++AA EYR+L+T+MC + LAPNLP+ +SL L WFEPL+D I +
Sbjct: 209 KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILE 268

Query: 449 EQEMY---QSGKKRTIYAPYFLQLPPEKMAIIT 538
           EQ  Y   +  + R++Y PY  QLP + +A+IT
Sbjct: 269 EQRAYGNREHREHRSMYGPYMCQLPADMLAVIT 301

[47][TOP]
>UniRef100_Q8L6F8 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens
           RepID=Q8L6F8_PHYPA
          Length = 1065

 Score =  111 bits (278), Expect = 3e-23
 Identities = 51/93 (54%), Positives = 69/93 (74%), Gaps = 3/93 (3%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           K +EL KRQVKIETE W++AA EYR+L+T+MC + LAPNLP+ +SL L WFEPL+D I +
Sbjct: 209 KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILE 268

Query: 449 EQEMY---QSGKKRTIYAPYFLQLPPEKMAIIT 538
           EQ  Y   +  + R++Y PY  QLP + +A+IT
Sbjct: 269 EQRAYGNREHREHRSMYGPYMCQLPADMLAVIT 301

[48][TOP]
>UniRef100_A9TJW1 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9TJW1_PHYPA
          Length = 1065

 Score =  111 bits (278), Expect = 3e-23
 Identities = 51/93 (54%), Positives = 69/93 (74%), Gaps = 3/93 (3%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           K +EL KRQVKIETE W++AA EYR+L+T+MC + LAPNLP+ +SL L WFEPL+D I +
Sbjct: 209 KARELHKRQVKIETEAWQQAATEYRELMTEMCRKSLAPNLPFAQSLLLSWFEPLRDGILE 268

Query: 449 EQEMY---QSGKKRTIYAPYFLQLPPEKMAIIT 538
           EQ  Y   +  + R++Y PY  QLP + +A+IT
Sbjct: 269 EQRAYGNREHREHRSMYGPYMCQLPADMLAVIT 301

[49][TOP]
>UniRef100_Q70XR1 DNA-directed RNA polymerase n=1 Tax=Hordeum vulgare subsp. vulgare
           RepID=Q70XR1_HORVD
          Length = 948

 Score =  111 bits (277), Expect = 4e-23
 Identities = 53/119 (44%), Positives = 80/119 (67%)
 Frame = +2

Query: 179 DEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTD 358
           +EE+  LL+  ++ E+ +             ++ LR+RQVK ETE W  AA+EYR L  +
Sbjct: 89  EEELAALLERGKERERARR----------AGHRRLRQRQVKAETEAWARAAEEYRQLERE 138

Query: 359 MCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           M ++ LAP LPY+KSLFLGWFEPL+DA+ ++Q++ +  + + +YA Y L LPPEK+A+I
Sbjct: 139 MLDRNLAPQLPYVKSLFLGWFEPLRDAVARDQDVQRRKRVKHVYAKYLLLLPPEKVAVI 197

[50][TOP]
>UniRef100_Q70XR0 DNA-directed RNA polymerase n=1 Tax=Hordeum vulgare subsp. vulgare
           RepID=Q70XR0_HORVD
          Length = 948

 Score =  111 bits (277), Expect = 4e-23
 Identities = 53/119 (44%), Positives = 80/119 (67%)
 Frame = +2

Query: 179 DEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLTD 358
           +EE+  LL+  ++ E+ +             ++ LR+RQVK ETE W  AA+EYR L  +
Sbjct: 89  EEELAALLERGKERERARR----------AGHRRLRQRQVKAETEAWARAAEEYRQLERE 138

Query: 359 MCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           M ++ LAP LPY+KSLFLGWFEPL+DA+ ++Q++ +  + + +YA Y L LPPEK+A+I
Sbjct: 139 MLDRNLAPQLPYVKSLFLGWFEPLRDAVARDQDVQRRKRVKHVYAKYLLLLPPEKVAVI 197

[51][TOP]
>UniRef100_Q8SBD4 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens
           RepID=Q8SBD4_PHYPA
          Length = 1087

 Score =  110 bits (275), Expect = 6e-23
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 3/140 (2%)
 Frame = +2

Query: 128 DEFKLKNEAATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIE 307
           D+ + + E A +E   P + V     +  KE   ++ + RW      K K LR RQ KIE
Sbjct: 187 DDDESEEECAPEE---PPQSVDFNKAKTAKERAAESRKARW------KEKALRMRQFKIE 237

Query: 308 TEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQS---GKK 478
           TE W +AA EY++L+ +MC++ LAPNLP  +SL LGWFEPL+DAI +EQ+ Y+     + 
Sbjct: 238 TEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKDYEERNFREH 297

Query: 479 RTIYAPYFLQLPPEKMAIIT 538
           R IY P+  +LP + +A+IT
Sbjct: 298 RAIYGPFLAKLPADMLAVIT 317

[52][TOP]
>UniRef100_Q8L6F9 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens
           RepID=Q8L6F9_PHYPA
          Length = 1087

 Score =  110 bits (275), Expect = 6e-23
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 3/140 (2%)
 Frame = +2

Query: 128 DEFKLKNEAATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIE 307
           D+ + + E A +E   P + V     +  KE   ++ + RW      K K LR RQ KIE
Sbjct: 187 DDDESEEECAPEE---PPQSVDFNKAKTAKERAAESRKARW------KEKALRMRQFKIE 237

Query: 308 TEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQS---GKK 478
           TE W +AA EY++L+ +MC++ LAPNLP  +SL LGWFEPL+DAI +EQ+ Y+     + 
Sbjct: 238 TEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKDYEERNFREH 297

Query: 479 RTIYAPYFLQLPPEKMAIIT 538
           R IY P+  +LP + +A+IT
Sbjct: 298 RAIYGPFLAKLPADMLAVIT 317

[53][TOP]
>UniRef100_A9TL52 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9TL52_PHYPA
          Length = 1088

 Score =  110 bits (275), Expect = 6e-23
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 3/140 (2%)
 Frame = +2

Query: 128 DEFKLKNEAATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIE 307
           D+ + + E A +E   P + V     +  KE   ++ + RW      K K LR RQ KIE
Sbjct: 187 DDDESEEECAPEE---PPQSVDFNKAKTAKERAAESRKARW------KEKALRMRQFKIE 237

Query: 308 TEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQS---GKK 478
           TE W +AA EY++L+ +MC++ LAPNLP  +SL LGWFEPL+DAI +EQ+ Y+     + 
Sbjct: 238 TEAWHQAAAEYKELVAEMCKKNLAPNLPATRSLLLGWFEPLRDAIAQEQKDYEERNFREH 297

Query: 479 RTIYAPYFLQLPPEKMAIIT 538
           R IY P+  +LP + +A+IT
Sbjct: 298 RAIYGPFLAKLPADMLAVIT 317

[54][TOP]
>UniRef100_Q41524 DNA-directed RNA polymerase n=1 Tax=Triticum aestivum
           RepID=Q41524_WHEAT
          Length = 949

 Score =  110 bits (274), Expect = 8e-23
 Identities = 54/122 (44%), Positives = 79/122 (64%)
 Frame = +2

Query: 170 YAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDL 349
           Y+  EE   ++ E EK+ +R              ++ LR+RQVK ETE W  AA+EYR L
Sbjct: 86  YSAVEEELAIILEREKDRERAR---------RADHRRLRQRQVKAETEAWARAAEEYRQL 136

Query: 350 LTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMA 529
             +M ++ LAP LPY+KSLFLGWFEPL+DA+ ++Q++ +  + + +YA Y L LP EK+A
Sbjct: 137 EGEMLDRHLAPQLPYVKSLFLGWFEPLRDAVARDQDVQRRKRVKHVYAKYLLLLPAEKVA 196

Query: 530 II 535
           +I
Sbjct: 197 VI 198

[55][TOP]
>UniRef100_Q52GZ3 DNA-directed RNA polymerase n=1 Tax=Spinacia oleracea
           RepID=Q52GZ3_SPIOL
          Length = 989

 Score =  108 bits (271), Expect = 2e-22
 Identities = 50/89 (56%), Positives = 67/89 (75%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           KY  LR+RQ+K ETE WE   +EYR+ + +M ++KLAPNLP +K+LFLGWFEPLK AIEK
Sbjct: 153 KYNLLRRRQIKAETEAWESMVEEYREFVREMRDKKLAPNLPQVKALFLGWFEPLKKAIEK 212

Query: 449 EQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           EQ+  +S K++ IY  +   LP +KMA+I
Sbjct: 213 EQKSQRSRKQKAIYGYHIDMLPADKMAVI 241

[56][TOP]
>UniRef100_C5Z749 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
           RepID=C5Z749_SORBI
          Length = 960

 Score =  108 bits (271), Expect = 2e-22
 Identities = 53/121 (43%), Positives = 82/121 (67%), Gaps = 3/121 (2%)
 Frame = +2

Query: 182 EEVKELLKEMEKE---EKRKNYEVRWNGMTEVKYKELRKRQVKIETEVWEEAAKEYRDLL 352
           EE +E   E+E E   E+    E +       +++ LR+RQVK ETE W  AA+EYR++ 
Sbjct: 91  EEEREAGLELELELELERHAEMERQRERARRAQHRRLRQRQVKAETEAWARAAEEYREIE 150

Query: 353 TDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAI 532
            +M +++LAP LPY+KSLF+GWFEPL+DAI ++Q++ +  + + +YA Y L LP +K+A+
Sbjct: 151 REMLDRRLAPALPYVKSLFVGWFEPLRDAIARDQDVQRRKRVKHVYAKYLLLLPADKVAV 210

Query: 533 I 535
           I
Sbjct: 211 I 211

[57][TOP]
>UniRef100_Q9SYW4 DNA-directed RNA polymerase n=1 Tax=Zea mays RepID=Q9SYW4_MAIZE
          Length = 952

 Score =  108 bits (270), Expect = 2e-22
 Identities = 58/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
 Frame = +2

Query: 125 IDEFKLKNEAATK--EVYAPDEEVKELLKEMEKE---EKRKNYEVRWNGMTEVKYKELRK 289
           +D F   N  A    ++ A  EE  E   E+E E   EK    E +       + + LR+
Sbjct: 63  LDLFAFLNSPADTYHQIPAQGEEELEAGLELELELELEKHAEVERQRGRARRAQLRRLRQ 122

Query: 290 RQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQS 469
           RQVK ETE W  AA+EYR++  +M +++LAP LPY+K+LF+GWFEPL+DAI ++Q++ + 
Sbjct: 123 RQVKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRR 182

Query: 470 GKKRTIYAPYFLQLPPEKMAII 535
            + + +YA Y L LP +K+A+I
Sbjct: 183 KRVKHVYAKYLLLLPADKVAVI 204

[58][TOP]
>UniRef100_O82725 DNA-directed RNA polymerase n=1 Tax=Zea mays RepID=O82725_MAIZE
          Length = 952

 Score =  108 bits (270), Expect = 2e-22
 Identities = 58/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
 Frame = +2

Query: 125 IDEFKLKNEAATK--EVYAPDEEVKELLKEMEKE---EKRKNYEVRWNGMTEVKYKELRK 289
           +D F   N  A    ++ A  EE  E   E+E E   EK    E +       + + LR+
Sbjct: 63  LDLFAFLNSPADTYHQIPAQGEEELEAGLELELELELEKHAEVERQRGRARRAQLRRLRQ 122

Query: 290 RQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQS 469
           RQVK ETE W  AA+EYR++  +M +++LAP LPY+K+LF+GWFEPL+DAI ++Q++ + 
Sbjct: 123 RQVKAETEAWARAAEEYREIEREMLDRRLAPALPYVKALFVGWFEPLRDAIARDQDVQRR 182

Query: 470 GKKRTIYAPYFLQLPPEKMAII 535
            + + +YA Y L LP +K+A+I
Sbjct: 183 KRVKHVYAKYLLLLPADKVAVI 204

[59][TOP]
>UniRef100_B9N9P4 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N9P4_POPTR
          Length = 293

 Score =  103 bits (257), Expect = 8e-21
 Identities = 48/70 (68%), Positives = 55/70 (78%)
 Frame = +2

Query: 326 AAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFL 505
           A KEY++LL DMCE KLAPNLPY KSLFLGWFEP  DAI KEQE+ + GK R  YAPYF 
Sbjct: 2   ATKEYKELLKDMCEHKLAPNLPYTKSLFLGWFEPFTDAIAKEQELIRMGKSRKGYAPYFD 61

Query: 506 QLPPEKMAII 535
            LP +KM++I
Sbjct: 62  LLPADKMSVI 71

[60][TOP]
>UniRef100_A6GV60 DNA-directed RNA polymerase 1 (Fragment) n=1 Tax=Chrysanthemum x
           morifolium RepID=A6GV60_CHRMO
          Length = 174

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 44/64 (68%), Positives = 52/64 (81%)
 Frame = +2

Query: 347 LLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKM 526
           ++TDMCEQKLAPNLPY+KSLFLGWFEPLK+AI  EQ++ + GK R  YAP F QLP + M
Sbjct: 106 MMTDMCEQKLAPNLPYVKSLFLGWFEPLKNAISGEQDLCKEGKNRGAYAPQFDQLPADMM 165

Query: 527 AIIT 538
            IIT
Sbjct: 166 TIIT 169

[61][TOP]
>UniRef100_A9TJ21 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9TJ21_PHYPA
          Length = 861

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 43/93 (46%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           K +ELR+RQ+  ETE W  A  +Y + + +MC +KLAPNLP  + L LGW+EPL+DAI +
Sbjct: 9   KLQELRQRQIINETEAWTNAEAQYEEFIAEMCRKKLAPNLPASQLLLLGWYEPLRDAIAE 68

Query: 449 EQEMYQSGK---KRTIYAPYFLQLPPEKMAIIT 538
           EQ  +   +   +R  Y P+  QLPP ++A+IT
Sbjct: 69  EQRAFSELEFRGERASYGPFLCQLPPSQLAVIT 101

[62][TOP]
>UniRef100_B2RFX8 DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii
           RepID=B2RFX8_9TRAC
          Length = 1002

 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 10/145 (6%)
 Frame = +2

Query: 134 FKLKNEAATKEVYAPDEEVKELLKEMEKEEKRKNYEVRWNGMTEVKYKELR-----KRQV 298
           F+LK   AT+  +  +EEV  L +  E  +       ++ G   +K    R      RQ 
Sbjct: 119 FQLK-AVATEACFGEEEEVGVLPELEEIHDISLERSSKFEGGKALKAARARARRLFNRQQ 177

Query: 299 KIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQ---EMYQS 469
           K+E + W+ A +EYR +L +MC +KLAPNLP+ KSL + WFEP++D I KE    E  + 
Sbjct: 178 KLELDAWDAAVREYRKILVEMCRKKLAPNLPFAKSLMVSWFEPVRDEIAKELKAIEKEEP 237

Query: 470 GKKRTIYAPYF--LQLPPEKMAIIT 538
           G+ R+ Y P      L  + +A+IT
Sbjct: 238 GEDRSHYGPLLKGAGLTADVLAVIT 262

[63][TOP]
>UniRef100_Q67UP6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa Japonica Group
           RepID=Q67UP6_ORYSJ
          Length = 806

 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 32/59 (54%), Positives = 47/59 (79%)
 Frame = +2

Query: 359 MCEQKLAPNLPYMKSLFLGWFEPLKDAIEKEQEMYQSGKKRTIYAPYFLQLPPEKMAII 535
           M +++LAP LPY+KSLFLGWFEPL+DAI ++QE+ +  + + +YA Y L LP +K+A+I
Sbjct: 1   MLDRRLAPALPYVKSLFLGWFEPLRDAIARDQEVQRRKRVKHVYAKYLLLLPADKVAVI 59

[64][TOP]
>UniRef100_C5YRB2 Putative uncharacterized protein Sb08g020310 n=1 Tax=Sorghum
           bicolor RepID=C5YRB2_SORBI
          Length = 118

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           +++ LR RQVK+E E WE   +EYR++  +  +++LA  L   KSLF+GWFE L + I  
Sbjct: 12  QHRRLRLRQVKVEIEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETITC 71

Query: 449 EQEMYQSGKKRTIYA--PYFLQLPPEKMAII 535
           ++ M +  + + +Y    Y L L  +K+ +I
Sbjct: 72  DRHMQRWKRVKHVYGLRQYLLLLLADKVVVI 102

[65][TOP]
>UniRef100_C5Z826 Putative uncharacterized protein Sb10g009430 n=1 Tax=Sorghum
           bicolor RepID=C5Z826_SORBI
          Length = 115

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 28/74 (37%), Positives = 47/74 (63%)
 Frame = +2

Query: 269 KYKELRKRQVKIETEVWEEAAKEYRDLLTDMCEQKLAPNLPYMKSLFLGWFEPLKDAIEK 448
           +++ LR RQVK ETE WE   +EYR++  +  +++LA  L   KSLF+GWFE L + I  
Sbjct: 12  QHRRLRLRQVKAETEAWERTDEEYREIEREKLDRRLALALLCDKSLFVGWFESLWETITC 71

Query: 449 EQEMYQSGKKRTIY 490
           ++ + +  + + +Y
Sbjct: 72  DRHVQRWKRVKHVY 85

[66][TOP]
>UniRef100_B7FJU7 Putative uncharacterized protein n=1 Tax=Medicago truncatula
          RepID=B7FJU7_MEDTR
          Length = 217

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = -1

Query: 95 MEKAESSTASTSDQDSDEKHRTNHHLTLP 9
          MEKAESSTASTSDQDSDE HRT HHLTLP
Sbjct: 1  MEKAESSTASTSDQDSDENHRTQHHLTLP 29

[67][TOP]
>UniRef100_B9PER6 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
           RepID=B9PER6_POPTR
          Length = 109

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
 Frame = +2

Query: 182 EEVKELLKEMEKEEKR-KNYEVRWN-GMTEVKYKELRKRQVKIETEVWEEAAKEYRDLLT 355
           +EV+EL  EM KEE+      +R N G+   K++ LR+RQVKIE E WE A KEY++LL 
Sbjct: 48  DEVQELQPEMRKEEEHFSRRRLRANPGIGSRKHRVLRRRQVKIEAEAWELATKEYKELLK 107

Query: 356 DM 361
           DM
Sbjct: 108 DM 109