[UP]
[1][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 255 bits (652), Expect = 1e-66
Identities = 118/179 (65%), Positives = 153/179 (85%)
Frame = +2
Query: 5 EEGYQRLWERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCA 184
++GY+RLW+ RMR+ F+S +QTG YLN+KSMVVTGFLRSLVNGDCA+LSKD+LSS+A+ A
Sbjct: 1039 DDGYKRLWDERMRKSFLSKIQTGEYLNSKSMVVTGFLRSLVNGDCAVLSKDTLSSSASVA 1098
Query: 185 QQAIFKALGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGT 364
QQ+IFKALG DERIYLRTLQHQLDLY+ D ENPYSN+AW K+L+A+G R++L ++G
Sbjct: 1099 QQSIFKALGIDERIYLRTLQHQLDLYSADIPENPYSNSAWIKILKAIGMGRTYLAENGCG 1158
Query: 365 LLLLAGALIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLKAQQSSSSQEKGYRA 541
+L++A ALI++L+S WGFWKLF+GLF+ S++L + G+ VD+KAQQ SSSQE GYRA
Sbjct: 1159 ILMIAAALILILVSAWGFWKLFIGLFSGSMSLGAAIVGMSAVDIKAQQKSSSQEGGYRA 1217
[2][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 242 bits (617), Expect = 1e-62
Identities = 114/177 (64%), Positives = 148/177 (83%)
Frame = +2
Query: 11 GYQRLWERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCAQQ 190
GYQRLW+ RMR+ F+ +Q +LNTKSMVVTGFLRSLVNG+CA+LSKD+L+++AT AQ
Sbjct: 1043 GYQRLWDSRMRKKFLPAIQRDEHLNTKSMVVTGFLRSLVNGECAVLSKDTLTASATTAQL 1102
Query: 191 AIFKALGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGTLL 370
+IFKAL +ER+YLRTLQHQLDLY+QD ENPY N+AW KVL A+GA R +L ++G +L
Sbjct: 1103 SIFKALRLEERVYLRTLQHQLDLYSQDIPENPYCNSAWVKVLGAIGAGRDYLVQNGCGIL 1162
Query: 371 LLAGALIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLKAQQSSSSQEKGYRA 541
++A ALI++L+S WGFWKLFVGLF+ +++L +TG+ VD+KAQQSS+SQEKGYRA
Sbjct: 1163 MIAAALILILVSGWGFWKLFVGLFSGTMSLGAAITGMSAVDIKAQQSSASQEKGYRA 1219
[3][TOP]
>UniRef100_UPI00003FE52A NTP-binding domain n=1 Tax=Beet ringspot virus RepID=UPI00003FE52A
Length = 640
Score = 234 bits (596), Expect = 4e-60
Identities = 106/165 (64%), Positives = 141/165 (85%)
Frame = +2
Query: 5 EEGYQRLWERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCA 184
++GY+RLW+ RMR+ F+S +QTG YLN+KSMVVTGFLRSLVNGDCA+LSKD+LSS+A+ A
Sbjct: 476 DDGYKRLWDERMRKSFLSKIQTGEYLNSKSMVVTGFLRSLVNGDCAVLSKDTLSSSASVA 535
Query: 185 QQAIFKALGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGT 364
QQ+IFKALG DERIYLRTLQHQLDLY+ D ENPYSN+AW K+L+A+G R++L ++G
Sbjct: 536 QQSIFKALGIDERIYLRTLQHQLDLYSADIPENPYSNSAWIKILKAIGMGRTYLAENGCG 595
Query: 365 LLLLAGALIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLK 499
+L++A ALI++L+S WGFWKLF+GLF+ S++L + G+ VD+K
Sbjct: 596 ILMIAAALILILVSAWGFWKLFIGLFSGSMSLGAAIVGMSAVDIK 640
[4][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 201 bits (510), Expect = 4e-50
Identities = 95/180 (52%), Positives = 129/180 (71%), Gaps = 2/180 (1%)
Frame = +2
Query: 8 EGYQRLWERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCAQ 187
EGYQ+LW +RM+ ++ V TG YLN SM+VTGFLRSLVNGDCA+LS D+LS+TAT Q
Sbjct: 1024 EGYQKLWAQRMKNMYLPAVTTGRYLNASSMIVTGFLRSLVNGDCAVLSVDALSTTATFTQ 1083
Query: 188 QAIFKALGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGTL 367
+ IF++L ER+YLR LQ Q+D Y D ENPYSN W K+L+ALG R F+ +GG +
Sbjct: 1084 KRIFESLNLAERVYLRALQCQIDAYTLDIPENPYSNVCWVKMLKALGQGREFIVSNGGGI 1143
Query: 368 LLLAGALIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLKAQQ--SSSSQEKGYRA 541
L++A A+I+VL+ WGFWK FVGLFT S++L + G + ++KA S+ ++GYR+
Sbjct: 1144 LMIAAAIILVLVCGWGFWKAFVGLFTGSMSLGAALAGCQEAEVKAHSVYSADGGDRGYRS 1203
[5][TOP]
>UniRef100_UPI00017F0C91 NTP-binding protein n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C91
Length = 616
Score = 194 bits (493), Expect = 3e-48
Identities = 90/164 (54%), Positives = 120/164 (73%)
Frame = +2
Query: 8 EGYQRLWERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCAQ 187
EGYQ+LW +RM+ ++ V TG YLN SM+VTGFLRSLVNGDCA+LS D+LS+TAT Q
Sbjct: 453 EGYQKLWAQRMKNMYLPAVTTGRYLNASSMIVTGFLRSLVNGDCAVLSVDALSTTATFTQ 512
Query: 188 QAIFKALGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGTL 367
+ IF++L ER+YLR LQ Q+D Y D ENPYSN W K+L+ALG R F+ +GG +
Sbjct: 513 KRIFESLNLAERVYLRALQCQIDAYTLDIPENPYSNVCWVKMLKALGQGREFIVSNGGGI 572
Query: 368 LLLAGALIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLK 499
L++A A+I+VL+ WGFWK FVGLFT S++L + G + ++K
Sbjct: 573 LMIAAAIILVLVCGWGFWKAFVGLFTGSMSLGAALAGCQEAEVK 616
[6][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 132 bits (331), Expect = 2e-29
Identities = 67/172 (38%), Positives = 106/172 (61%)
Frame = +2
Query: 26 WERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCAQQAIFKA 205
WER E+F+ VQ + L +S++V+G LR+LV G C +LS D +S C Q+ +FKA
Sbjct: 1097 WERNSSENFVGGVQALDALECRSILVSGILRNLVQGQCCVLSIDEMSRLPLCTQR-LFKA 1155
Query: 206 LGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGTLLLLAGA 385
L ER+YLR +Q ++ N YS AW + LE A+R +L++HG +LLL A
Sbjct: 1156 LQLQERVYLRLIQKKISHILSVDESNVYSKNAWMRCLEFAAASRDYLKEHGLEVLLLLAA 1215
Query: 386 LIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLKAQQSSSSQEKGYRA 541
++++ ++++ F F+G+ ++++ M GLK VD+KAQ SS +QE YR+
Sbjct: 1216 MMILCVALYYFVGAFIGVMGGALSMGAAMAGLKEVDMKAQYSSGAQEGRYRS 1267
[7][TOP]
>UniRef100_UPI00003FE52C NTP-binding domain n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52C
Length = 694
Score = 118 bits (295), Expect = 3e-25
Identities = 59/158 (37%), Positives = 96/158 (60%)
Frame = +2
Query: 26 WERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCAQQAIFKA 205
WER E+F+ VQ + L +S++V+G LR+LV G C +LS D +S C Q+ +FKA
Sbjct: 538 WERNSSENFVGGVQALDALECRSILVSGILRNLVQGQCCVLSIDEMSRLPLCTQR-LFKA 596
Query: 206 LGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGTLLLLAGA 385
L ER+YLR +Q ++ N YS AW + LE A+R +L++HG +LLL A
Sbjct: 597 LQLQERVYLRLIQKKISHILSVDESNVYSKNAWMRCLEFAAASRDYLKEHGLEVLLLLAA 656
Query: 386 LIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLK 499
++++ ++++ F F+G+ ++++ M GLK VD+K
Sbjct: 657 MMILCVALYYFVGAFIGVMGGALSMGAAMAGLKEVDMK 694
[8][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 58.5 bits (140), Expect = 3e-07
Identities = 43/172 (25%), Positives = 84/172 (48%)
Frame = +2
Query: 26 WERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCAQQAIFKA 205
+E+ E T+Q KS FLRS+V+G+CA+ D L+ +A+ FK
Sbjct: 1076 FEQICLEKLSYTLQADIQGGPKSATAGIFLRSMVSGECAVEGVDKLNKSASREHLVFFKN 1135
Query: 206 LGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGTLLLLAGA 385
L +R+YLR +Q ++ A +P ++ ++E ++ ++++++GG LLL+ +
Sbjct: 1136 LSLADRVYLRLVQKRILQLAM--VGDPLGVRSYAVMMEGFQSSYNYVKENGGRLLLILCS 1193
Query: 386 LIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLKAQQSSSSQEKGYRA 541
+++ ++ + F+ L + G VD+ A S+S+ Y A
Sbjct: 1194 CMLLGVACYAFFNALAILIGGTSVAAGAAA---MVDIGACGSTSTYASDYGA 1242
[9][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 57.0 bits (136), Expect = 8e-07
Identities = 45/172 (26%), Positives = 84/172 (48%)
Frame = +2
Query: 26 WERRMREHFISTVQTGNYLNTKSMVVTGFLRSLVNGDCAILSKDSLSSTATCAQQAIFKA 205
+E+ E T+Q KS FLRS+V+G+CA+ S D L+ +A+ FK
Sbjct: 1077 FEQICLEKLSYTLQADIQGGPKSATAGIFLRSMVSGECAVESVDKLNRSASREHLIFFKN 1136
Query: 206 LGEDERIYLRTLQHQLDLYAQDCAENPYSNTAWCKVLEALGAARSFLEKHGGTLLLLAGA 385
L +R+YLR +Q ++ A +P ++ ++E + ++++++GG LLL+ +
Sbjct: 1137 LSLADRVYLRLVQKRILQLAM--VGDPLGLRSYTVMMEGFQNSYNYVKENGGRLLLILCS 1194
Query: 386 LIVVLISIWGFWKLFVGLFTSSVTLXGVMTGLKGVDLKAQQSSSSQEKGYRA 541
+++ I+ + F+ L + G VD+ A S+S+ Y A
Sbjct: 1195 CMLLGIACYTFFNALAILIGGTSVAAGAAA---MVDIGACGSTSTYASEYGA 1243
[10][TOP]
>UniRef100_UPI0000163DCD cysteine protease n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCD
Length = 438
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Frame = +2
Query: 110 FLRSLVNGDCAILSKDSLSSTATCAQQAIFKALGEDERIYLRTLQHQLDLYAQDCAENPY 289
F+ + G C + S ++L+S AT Q+ F++L ERIY+R +Q QLD + + +
Sbjct: 21 FVHAFTEGPCHVDSVEALNSEATSCQRDFFQSLSLLERIYMRLVQKQLDRIRAN-PDFLF 79
Query: 290 SNTAWCKVLEALGAARSFLEKHGGTLLLLAGALIVVLI---SIWGFWKLFVGLFTSSVTL 460
S ++L++ + HGG +L + AL++VL+ S + ++ FV +S++
Sbjct: 80 SVDIKTRILQSFRHGYDEMITHGGKVLAIFAALLLVLLLYSSFFALYQTFVAGTSSALVS 139
Query: 461 XGVMTGL 481
G++T L
Sbjct: 140 AGMITQL 146
[11][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 56.2 bits (134), Expect = 1e-06
Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Frame = +2
Query: 110 FLRSLVNGDCAILSKDSLSSTATCAQQAIFKALGEDERIYLRTLQHQLDLYAQDCAENPY 289
F+ + G C + S ++L+S AT Q+ F++L ERIY+R +Q QLD + + +
Sbjct: 970 FVHAFTEGPCHVDSVEALNSEATSCQRDFFQSLSLLERIYMRLVQKQLDRIRAN-PDFLF 1028
Query: 290 SNTAWCKVLEALGAARSFLEKHGGTLLLLAGALIVVLI---SIWGFWKLFVGLFTSSVTL 460
S ++L++ + HGG +L + AL++VL+ S + ++ FV +S++
Sbjct: 1029 SVDIKTRILQSFRHGYDEMITHGGKVLAIFAALLLVLLLYSSFFALYQTFVAGTSSALVS 1088
Query: 461 XGVMTGL 481
G++T L
Sbjct: 1089 AGMITQL 1095