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[1][TOP]
>UniRef100_C6T7E3 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6T7E3_SOYBN
Length = 291
Score = 221 bits (564), Expect = 1e-56
Identities = 117/146 (80%), Positives = 127/146 (86%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGGGEFGRGPRTRRCEVTL+TKRHGVVRAEE AE+TYGSIDLVSSIIQRKLRK
Sbjct: 107 VDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRK 166
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IK+K +DHGRHMKG NRLK E + LP EEDEI ++PQ +EEE I+EVVRTKYFDM
Sbjct: 167 IKEKVSDHGRHMKGFNRLKVREPVEQLPV--EEDEI-LSPQ--EEEESIDEVVRTKYFDM 221
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PPLTV EAI+QLE VDHDFY FRNEE
Sbjct: 222 PPLTVAEAIEQLENVDHDFYGFRNEE 247
[2][TOP]
>UniRef100_UPI0001984F94 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984F94
Length = 298
Score = 204 bits (519), Expect = 2e-51
Identities = 104/146 (71%), Positives = 122/146 (83%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GP+ RRCEVTL+TK+HGVVRAEEHAET YGSID+VSSIIQRKLRK
Sbjct: 115 VDVRLSIRGG-ELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRK 173
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IK+K++DHGRHMKG NRLK + PL E+E ++ PQK+D +LI E+VRTKYFDM
Sbjct: 174 IKEKDSDHGRHMKGFNRLKVRDPETPL----VEEEADVVPQKED-GDLINEIVRTKYFDM 228
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PPLTV EA++QLE VDHDF+ FRNEE
Sbjct: 229 PPLTVPEAVEQLENVDHDFFGFRNEE 254
[3][TOP]
>UniRef100_A7QEV5 Chromosome chr16 scaffold_86, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QEV5_VITVI
Length = 230
Score = 204 bits (519), Expect = 2e-51
Identities = 104/146 (71%), Positives = 122/146 (83%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GP+ RRCEVTL+TK+HGVVRAEEHAET YGSID+VSSIIQRKLRK
Sbjct: 47 VDVRLSIRGG-ELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRK 105
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IK+K++DHGRHMKG NRLK + PL E+E ++ PQK+D +LI E+VRTKYFDM
Sbjct: 106 IKEKDSDHGRHMKGFNRLKVRDPETPL----VEEEADVVPQKED-GDLINEIVRTKYFDM 160
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PPLTV EA++QLE VDHDF+ FRNEE
Sbjct: 161 PPLTVPEAVEQLENVDHDFFGFRNEE 186
[4][TOP]
>UniRef100_B9IDE9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IDE9_POPTR
Length = 231
Score = 201 bits (512), Expect = 2e-50
Identities = 105/146 (71%), Positives = 119/146 (81%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GPR RRCEVTL+TKRHGVVRAEE AET + SIDLVSSIIQRKLRK
Sbjct: 47 VDVRLSVRGG-ELGKGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRK 105
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IKDKE+DHGRHMKG NRLK E + + ED+ DE+ + ++E+ IEEVVRTKYFDM
Sbjct: 106 IKDKESDHGRHMKGFNRLKVREPMHQVVVEDDADEV----SQQEDEDYIEEVVRTKYFDM 161
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PPLTV EAI+QLE V HDFY FR+EE
Sbjct: 162 PPLTVSEAIEQLEHVHHDFYGFRDEE 187
[5][TOP]
>UniRef100_A9PHY3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa
RepID=A9PHY3_POPTR
Length = 306
Score = 201 bits (512), Expect = 2e-50
Identities = 105/146 (71%), Positives = 119/146 (81%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GPR RRCEVTL+TKRHGVVRAEE AET + SIDLVSSIIQRKLRK
Sbjct: 122 VDVRLSVRGG-ELGKGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRK 180
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IKDKE+DHGRHMKG NRLK E + + ED+ DE+ + ++E+ IEEVVRTKYFDM
Sbjct: 181 IKDKESDHGRHMKGFNRLKVREPMHQVVVEDDADEV----SQQEDEDYIEEVVRTKYFDM 236
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PPLTV EAI+QLE V HDFY FR+EE
Sbjct: 237 PPLTVSEAIEQLEHVHHDFYGFRDEE 262
[6][TOP]
>UniRef100_B9SEK8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1
Tax=Ricinus communis RepID=B9SEK8_RICCO
Length = 311
Score = 200 bits (508), Expect = 5e-50
Identities = 103/146 (70%), Positives = 121/146 (82%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG EFG+GP+ RRCEVTL+TK+HGV+RAEE AET Y SIDLVSSIIQRKLRK
Sbjct: 125 VDVRLSVRGG-EFGKGPKIRRCEVTLFTKKHGVIRAEEDAETIYASIDLVSSIIQRKLRK 183
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IK+K +DHGRHMKG NRLK E + P +D+ DE++ D++E+ I+EVVRTKYFDM
Sbjct: 184 IKEKVSDHGRHMKGFNRLKVREPVAE-PVKDDTDEVD-GVLGDEDEDYIDEVVRTKYFDM 241
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PPLTV EAI+QL+ VDHDFY FRNEE
Sbjct: 242 PPLTVSEAIEQLKNVDHDFYGFRNEE 267
[7][TOP]
>UniRef100_B9I297 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I297_POPTR
Length = 306
Score = 200 bits (508), Expect = 5e-50
Identities = 107/146 (73%), Positives = 118/146 (80%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GPR RRCEVTL+T RHGVVRAEE AET Y SIDLVSSIIQRKLRK
Sbjct: 123 VDVRLSVRGG-ELGKGPRIRRCEVTLFTNRHGVVRAEEDAETIYASIDLVSSIIQRKLRK 181
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IK+KE+DHGRHMKG NRLK E P+P E D E++ Q + E+ IEEVVRTK+FDM
Sbjct: 182 IKEKESDHGRHMKGFNRLKVRE---PVPQVVEGDADEVSQQ--EVEDSIEEVVRTKFFDM 236
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PPLTV EAI+QLE VDHDFY FRNEE
Sbjct: 237 PPLTVSEAIEQLENVDHDFYGFRNEE 262
[8][TOP]
>UniRef100_Q9FLV3 Similarity to ribosomal protein 30S subunit n=2 Tax=Arabidopsis
thaliana RepID=Q9FLV3_ARATH
Length = 365
Score = 197 bits (500), Expect = 4e-49
Identities = 98/147 (66%), Positives = 122/147 (82%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG EFG+GPR RRCEVTL+TK+HGVVRAEE AET Y IDLVS+IIQRKLRK
Sbjct: 176 VDVRLSVRGG-EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRK 234
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEIT-PQKDDEEELIEEVVRTKYFD 357
IK+K++DHGRHMKG NRLK E ++ ED ED + + ++++E++LI+E+VRTK F+
Sbjct: 235 IKEKDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFE 294
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MPPLTV EA++QLE+V HDFY F+NEE
Sbjct: 295 MPPLTVAEAVEQLELVSHDFYGFQNEE 321
[9][TOP]
>UniRef100_P19954 30S ribosomal protein 1, chloroplastic n=1 Tax=Spinacia oleracea
RepID=RR30_SPIOL
Length = 302
Score = 189 bits (479), Expect = 1e-46
Identities = 99/149 (66%), Positives = 115/149 (77%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG + +GP+ RRCEVTL+TKRHGV+RAEE AE+ Y SIDLVSSIIQRKLRK
Sbjct: 112 VDVRLSARGG-DLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRK 170
Query: 181 IKDKETDHGRHMKGPNRLKFSE---VILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
IKDK +DHGRHMKG NR K + V + EE E P ++++ IEEVVRTKY
Sbjct: 171 IKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFIEEVVRTKY 230
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
FDMPPLT+ EA++QLE VDHDFYAFRNEE
Sbjct: 231 FDMPPLTITEAVEQLENVDHDFYAFRNEE 259
[10][TOP]
>UniRef100_C9EFD1 Chloroplast ribosomal protein (Fragment) n=1 Tax=Solanum tuberosum
RepID=C9EFD1_SOLTU
Length = 280
Score = 184 bits (468), Expect = 2e-45
Identities = 97/151 (64%), Positives = 117/151 (77%), Gaps = 5/151 (3%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GP+ RRCEVTL+TK+HGV+RAEE AE+ YGSID+VSSIIQRKLRK
Sbjct: 94 VDVRLSVRGG-ELGKGPKIRRCEVTLFTKKHGVIRAEEDAESIYGSIDMVSSIIQRKLRK 152
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSED-----EEDEIEITPQKDDEEELIEEVVRT 345
IK+K++DHGRHMKG +RLK + + L ED +E+E+E D + + EVVR
Sbjct: 153 IKEKDSDHGRHMKGFDRLKVRDPEVLLVQEDLETLPQEEEVE---DDDKSDGFVTEVVRK 209
Query: 346 KYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
K FDMPPL+V EAI+QLE VDHDFY FRNEE
Sbjct: 210 KSFDMPPLSVNEAIEQLENVDHDFYGFRNEE 240
[11][TOP]
>UniRef100_Q672Q2 Chloroplast-specific ribosomal protein n=1 Tax=Solanum lycopersicum
RepID=Q672Q2_SOLLC
Length = 311
Score = 179 bits (453), Expect = 1e-43
Identities = 95/151 (62%), Positives = 114/151 (75%), Gaps = 5/151 (3%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GP+ RRCEVTL+TK+HGV+RAEE E+ YGSID+VSSIIQRKLRK
Sbjct: 122 VDVRLSVRGG-ELGKGPKIRRCEVTLFTKKHGVIRAEEDGESIYGSIDMVSSIIQRKLRK 180
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSED-----EEDEIEITPQKDDEEELIEEVVRT 345
IK+K++D GRHMKG +RLK + L ED +E+E+E D + + EVVR
Sbjct: 181 IKEKDSDRGRHMKGFDRLKVRDPEALLVQEDLETLSQEEEVE----DDKSDGFVTEVVRK 236
Query: 346 KYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
K FDMPPL+V EAI+QLE VDHDFY FRNEE
Sbjct: 237 KSFDMPPLSVNEAIEQLENVDHDFYGFRNEE 267
[12][TOP]
>UniRef100_B6TYP8 Plastid-specific 30S ribosomal protein 1 n=1 Tax=Zea mays
RepID=B6TYP8_MAIZE
Length = 309
Score = 157 bits (398), Expect = 3e-37
Identities = 86/147 (58%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E GRGP+T RCE+TL+TKRHGV+RAEE AE+TY SIDL ++I++RKLRK
Sbjct: 109 VDVRLSARGG-ELGRGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVKRKLRK 167
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILP--LPSEDEEDEIEITPQKDDEEELIEEVVRTKYF 354
IK+KET+ R G + + I P L E D++E +DEE ++ +VVRTK F
Sbjct: 168 IKEKETEVRR---GGDADGVWDEIPPADLLPPAEADDLEAAVGAEDEETVLAKVVRTKVF 224
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNE 435
+MPPLTV EA++QLE VDHDFY FR+E
Sbjct: 225 EMPPLTVEEALEQLENVDHDFYCFRDE 251
[13][TOP]
>UniRef100_B8LMC5 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LMC5_PICSI
Length = 321
Score = 157 bits (397), Expect = 3e-37
Identities = 87/154 (56%), Positives = 110/154 (71%), Gaps = 8/154 (5%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GP+ RRCEVTL+TK+HGVVRAEE AET Y SID+VS II+RKLRK
Sbjct: 125 VDVRLSIRGG-EVGKGPKIRRCEVTLFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRK 183
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEED-EIEITPQKDDEE-------ELIEEV 336
IK+K+ HGR K + K E++ + + +E + E+ D EE +L +EV
Sbjct: 184 IKEKDGGHGRPSKMRKQPKLGELLSTVVMDVKETRDKELDDLADVEEMRYEKIDDLSDEV 243
Query: 337 VRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
VRTKYF+MPP++ EA++QL VDHDFYAFRN E
Sbjct: 244 VRTKYFEMPPMSPEEALEQLMNVDHDFYAFRNME 277
[14][TOP]
>UniRef100_C5WRX8 Putative uncharacterized protein Sb01g000590 n=1 Tax=Sorghum
bicolor RepID=C5WRX8_SORBI
Length = 310
Score = 155 bits (392), Expect = 1e-36
Identities = 84/147 (57%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E GRGP+T RCE+TL++KRHGV+RAEE AE+TY SIDL ++II+RKLRK
Sbjct: 109 VDVRLSARGG-ELGRGPKTSRCEITLFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRK 167
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSED--EEDEIEITPQKDDEEELIEEVVRTKYF 354
IK+KET+ R G + E LPL +D E DE+ +DE+ ++ +VVRTK F
Sbjct: 168 IKEKETEVRRDGDGGAGGAWEEE-LPLLDDDLVEADELAAAVGAEDEQTVVAKVVRTKVF 226
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNE 435
+MPPLTV EA++QL+ V H+FY FR+E
Sbjct: 227 EMPPLTVEEALEQLDNVGHNFYCFRDE 253
[15][TOP]
>UniRef100_Q84M68 Os03g0856500 protein n=3 Tax=Oryza sativa RepID=Q84M68_ORYSJ
Length = 309
Score = 153 bits (386), Expect = 7e-36
Identities = 85/151 (56%), Positives = 111/151 (73%), Gaps = 5/151 (3%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E RGP+ RCE+TL+TKRHGV+RAEE AE+TY SIDL SSII+RKLRK
Sbjct: 118 VDVRLSARGG-ELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRK 176
Query: 181 IKDKETDHGRHMKG--PNRLKFSEVILPLPSEDEE---DEIEITPQKDDEEELIEEVVRT 345
IK+KETD RH+KG P + +L +D + ++E +DE+ ++ +VVRT
Sbjct: 177 IKEKETD-VRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDTVLTKVVRT 235
Query: 346 KYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
K F+MPPL+V EA++QL VDH+FYAFR+E+
Sbjct: 236 KVFEMPPLSVEEAMEQLVNVDHNFYAFRDEK 266
[16][TOP]
>UniRef100_C6TFU4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TFU4_SOYBN
Length = 208
Score = 145 bits (365), Expect = 2e-33
Identities = 76/104 (73%), Positives = 86/104 (82%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGGGEFGRGPRTRRCEVTL+TKRHGVVRAEE AE+TYGSIDLVSSIIQRKLRK
Sbjct: 107 VDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRK 166
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDD 312
IK+K +DHGRHMKG NRLK P DEI ++P++++
Sbjct: 167 IKEKVSDHGRHMKGFNRLKLGS---PWSITYGRDEI-LSPREEE 206
[17][TOP]
>UniRef100_A9RWK9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWK9_PHYPA
Length = 221
Score = 144 bits (364), Expect = 2e-33
Identities = 80/146 (54%), Positives = 102/146 (69%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVR+S RGG E GRG + +RCEVTL+TK+HGVVRAEE AE+ Y SID VS +I RKLRK
Sbjct: 47 VDVRMSVRGG-ETGRGGKLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRK 105
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IK+K+ HGR K + + EV+ S++ D I +K D +L +E+VRTKYF+M
Sbjct: 106 IKEKDGGHGRPTKSRHSPRIGEVL----SDEVVDLDPILGRKPD--DLPDEIVRTKYFEM 159
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
P+ EA++QL V HDFYAFRN E
Sbjct: 160 RPMKPLEALEQLVNVGHDFYAFRNVE 185
[18][TOP]
>UniRef100_A9PJW3 Putative uncharacterized protein n=1 Tax=Populus trichocarpa x
Populus deltoides RepID=A9PJW3_9ROSI
Length = 268
Score = 144 bits (362), Expect = 4e-33
Identities = 79/112 (70%), Positives = 88/112 (78%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E G+GPR RRCEVTL+TKRHGVVRAEE AET Y SIDL SSIIQRKLRK
Sbjct: 122 VDVRLSVRGG-ELGKGPRIRRCEVTLFTKRHGVVRAEEDAETIYASIDLASSIIQRKLRK 180
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEV 336
IKDKE+DHGRHMKG NRLK E P+ E+D E++ Q+D E+ IEEV
Sbjct: 181 IKDKESDHGRHMKGFNRLKVRE---PMHQVVEDDADEVSQQED--EDYIEEV 227
[19][TOP]
>UniRef100_A9TA00 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9TA00_PHYPA
Length = 297
Score = 142 bits (359), Expect = 9e-33
Identities = 83/146 (56%), Positives = 101/146 (69%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVR+S RGG E GRG R +RCEVTL+TK+HGVVRAEE AE+ Y SID VS +I RKLRK
Sbjct: 125 VDVRMSVRGG-ETGRGERLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRK 183
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
IK+K+ HGR K R+ EV+ S + D I +K D +L +EVVRTKYF+M
Sbjct: 184 IKEKDGGHGRPAKYSPRI--GEVL----SNEVVDLDPILERKPD--DLPDEVVRTKYFEM 235
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
P+ EA++QL V HDFYAFRN E
Sbjct: 236 RPMKPLEALEQLVNVGHDFYAFRNVE 261
[20][TOP]
>UniRef100_C6YXL0 Protein kinase n=1 Tax=Oryza sativa Japonica Group
RepID=C6YXL0_ORYSJ
Length = 321
Score = 137 bits (346), Expect = 3e-31
Identities = 79/146 (54%), Positives = 102/146 (69%), Gaps = 5/146 (3%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E RGP+ RCE+TL+TKRHGV+RAEE AE+TY SIDL SSII+RKLRK
Sbjct: 118 VDVRLSARGG-ELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRK 176
Query: 181 IKDKETDHGRHMKG--PNRLKFSEVILPLPSEDEE---DEIEITPQKDDEEELIEEVVRT 345
IK+KETD RH+KG P + +L +D + ++E +DE+ ++ VVRT
Sbjct: 177 IKEKETD-VRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDTVLTRVVRT 235
Query: 346 KYFDMPPLTVFEAIDQLEMVDHDFYA 423
K F+MPPL+ EA++QL DH F+A
Sbjct: 236 KVFEMPPLSGEEAMEQLGNGDHTFHA 261
[21][TOP]
>UniRef100_Q10AC8 Plastid-specific 30S ribosomal protein 1, chloroplast, putative,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q10AC8_ORYSJ
Length = 241
Score = 106 bits (265), Expect = 7e-22
Identities = 55/74 (74%), Positives = 63/74 (85%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDVRLS RGG E RGP+ RCE+TL+TKRHGV+RAEE AE+TY SIDL SSII+RKLRK
Sbjct: 118 VDVRLSARGG-ELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASSIIKRKLRK 176
Query: 181 IKDKETDHGRHMKG 222
IK+KETD RH+KG
Sbjct: 177 IKEKETD-VRHLKG 189
[22][TOP]
>UniRef100_B8HK26 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7425 RepID=B8HK26_CYAP4
Length = 209
Score = 103 bits (258), Expect = 5e-21
Identities = 71/150 (47%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRT---RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
+DV LS R PR + EVT+YT V+RAEE +E Y SIDLVS I R+
Sbjct: 38 IDVHLSV------ARNPRINPKQTAEVTIYTNG-SVIRAEESSENLYASIDLVSDKIARQ 90
Query: 172 LRKIKDKETD-HGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTK 348
LRK K++ D H R + P V +PL ++ D TP EL EEVVRTK
Sbjct: 91 LRKFKERRQDKHSRSKEEP------VVSVPLVTDLTGDR---TP------ELPEEVVRTK 135
Query: 349 YFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
YF MPP+T+ EA++QLE+VDHDFY FRN E
Sbjct: 136 YFAMPPMTLREALEQLELVDHDFYMFRNAE 165
[23][TOP]
>UniRef100_B9NF07 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9NF07_POPTR
Length = 127
Score = 101 bits (251), Expect = 3e-20
Identities = 61/120 (50%), Positives = 74/120 (61%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VD RLS RGG E G+GPR R+C RHGVVRAEE +ET Y +IDLV SIIQ KLRK
Sbjct: 29 VDARLSVRGG-ELGKGPRIRKC-------RHGVVRAEEDSETIYATIDLVLSIIQSKLRK 80
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
+K+ E+DHGRHMKG NRLK D+ + +K+D++ L E V Y M
Sbjct: 81 MKE-ESDHGRHMKGLNRLKI------------RDDADAVSRKEDDDYLDELVSVASYHQM 127
[24][TOP]
>UniRef100_A8YEZ8 LrtA protein n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YEZ8_MICAE
Length = 199
Score = 97.8 bits (242), Expect = 3e-19
Identities = 63/146 (43%), Positives = 83/146 (56%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS R P + EVT+Y V+RA+E +E Y SIDLVS I R+LRK
Sbjct: 38 VDVHLSVEKNA---RIPDRHKAEVTVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K++ DH H + +K SEV+ P +D D EL EVVR KYF M
Sbjct: 94 YKERLVDHRTH----STVKTSEVVQEKPLDDNLIG-------DRTPELPAEVVRMKYFAM 142
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PP+T+ EA+ QL++VDHDF+ F N++
Sbjct: 143 PPMTIEEALTQLQLVDHDFFMFCNKD 168
[25][TOP]
>UniRef100_Q8DKM6 LrtA protein n=1 Tax=Thermosynechococcus elongatus BP-1
RepID=Q8DKM6_THEEB
Length = 209
Score = 97.1 bits (240), Expect = 6e-19
Identities = 59/124 (47%), Positives = 75/124 (60%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSE 246
EVT++ V+RAEE +E Y SIDLV+ I RKLRK+K+K D R K N + E
Sbjct: 57 EVTVFVNG-SVIRAEESSENLYASIDLVADKIARKLRKLKEKRQDKSR-AKDTNSVVEPE 114
Query: 247 VILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAF 426
V+ L + TPQ L E+VVR KYF MPP+T+ EA++ LEMVDHDFY F
Sbjct: 115 VVTDLVGDR-------TPQ------LPEQVVRMKYFAMPPMTIQEALEHLEMVDHDFYVF 161
Query: 427 RNEE 438
RN +
Sbjct: 162 RNRD 165
[26][TOP]
>UniRef100_Q3M699 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Anabaena variabilis ATCC 29413 RepID=Q3M699_ANAVT
Length = 213
Score = 96.7 bits (239), Expect = 7e-19
Identities = 66/149 (44%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPR--TRRC-EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR TR+ EVT+Y V+RAEE +E Y SIDLV+ I R+
Sbjct: 38 VDVHLSV------ARNPRINTRQAAEVTIYANG-SVIRAEESSENLYASIDLVADKISRQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
LRK K+++ D + L +E I+P + + D EL EEVVRTKY
Sbjct: 91 LRKYKERKQD-----QKTQALPTTETIVP-------ETVVADLIGDRTPELPEEVVRTKY 138
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
F MPP+TV EA++QL++V HDFY F N E
Sbjct: 139 FSMPPMTVTEALEQLQLVGHDFYMFHNAE 167
[27][TOP]
>UniRef100_B2IVM1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2IVM1_NOSP7
Length = 214
Score = 96.3 bits (238), Expect = 9e-19
Identities = 66/149 (44%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPR--TRRC-EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR TR+ EVT+Y V+RAEE +E Y SIDLV+ I R+
Sbjct: 38 VDVHLSV------ARNPRINTRQAAEVTIYANG-SVIRAEESSENLYASIDLVADKIARQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
LRK K++ D + P + +E ++P D TP EL EVVRTKY
Sbjct: 91 LRKYKERRQDQ-KTQSQPTEVVVAESVVPDLIGDR------TP------ELPNEVVRTKY 137
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
F MPP+T+ EA++QL++V HDFY FRN E
Sbjct: 138 FSMPPMTLAEALEQLQLVGHDFYMFRNSE 166
[28][TOP]
>UniRef100_B0JSS1 Light repressed protein A homolog n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JSS1_MICAN
Length = 199
Score = 96.3 bits (238), Expect = 9e-19
Identities = 63/146 (43%), Positives = 84/146 (57%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS R P R EVT+Y V+RA+E +E Y SIDLVS I R+LRK
Sbjct: 38 VDVHLSVEKNA---RIPDRHRAEVTVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K++ DH + +K SEV+ +E ++ + D EL EVVR KYF M
Sbjct: 94 YKERLVDHRTNAP----VKTSEVV-------QEKPLDGSLIGDRTPELPAEVVRMKYFAM 142
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PP+T+ EA+ QL++VDHDFY F N++
Sbjct: 143 PPMTIEEALTQLQLVDHDFYMFCNKD 168
[29][TOP]
>UniRef100_B7KLI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7424 RepID=B7KLI5_CYAP7
Length = 199
Score = 95.9 bits (237), Expect = 1e-18
Identities = 59/146 (40%), Positives = 86/146 (58%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS + R + EVT+Y V+RA+E +E Y SIDLVS I R+LRK
Sbjct: 38 VDVHLSV---AKNARIQNKHKAEVTVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K+++ + H + +K EV+ +++ IE D + EL EVVR KYF M
Sbjct: 94 YKERKLEQNAH----SPVKAGEVV-------QQETIEENLIGDRQPELPPEVVRMKYFGM 142
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PP+++ EA++QL++VDHDF+ FRN +
Sbjct: 143 PPMSIDEALEQLQLVDHDFFMFRNRD 168
[30][TOP]
>UniRef100_B0CDL4 High light inducible protein n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDL4_ACAM1
Length = 212
Score = 95.9 bits (237), Expect = 1e-18
Identities = 63/150 (42%), Positives = 88/150 (58%), Gaps = 4/150 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRT---RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
+DV LS R PR + EVTL+ V+RAEE +E Y SIDLV+ I R+
Sbjct: 38 IDVHLSV------ARNPRITTKQTAEVTLFVNG-SVIRAEESSENLYASIDLVADKIARQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEI-EITPQKDDEEELIEEVVRTK 348
LRK K+K R KGPN+ + L + +E+ I ++T +D EL EEVVR K
Sbjct: 91 LRKYKEK-----RQTKGPNKGSNRSKAVALQTPEEQPLIGDLT--RDRAPELPEEVVRCK 143
Query: 349 YFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
YF + P++V +A++QL++VDHDFY F N +
Sbjct: 144 YFAISPMSVHDALEQLDLVDHDFYVFENAD 173
[31][TOP]
>UniRef100_Q8YSA5 Light-repressed protein n=1 Tax=Nostoc sp. PCC 7120
RepID=Q8YSA5_ANASP
Length = 213
Score = 95.1 bits (235), Expect = 2e-18
Identities = 65/149 (43%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPR--TRRC-EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR TR+ EVT+Y V+RAEE +E Y SIDLV+ I R+
Sbjct: 38 VDVHLSV------ARNPRINTRQAAEVTIYANG-SVIRAEESSENLYASIDLVADKISRQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
LRK K+++ D + +E I+P + + D EL EEVVRTKY
Sbjct: 91 LRKYKERKQDQKTQAQPT-----TETIVP-------ETVVADLIGDRTPELPEEVVRTKY 138
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
F MPP+TV EA++QL++V HDFY F N E
Sbjct: 139 FSMPPMTVTEALEQLQLVGHDFYMFHNAE 167
[32][TOP]
>UniRef100_C7QW97 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Cyanothece RepID=C7QW97_CYAP0
Length = 205
Score = 95.1 bits (235), Expect = 2e-18
Identities = 63/146 (43%), Positives = 81/146 (55%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS R + EVT+Y V+RA+E +E+ Y SIDLVS I R+LRK
Sbjct: 45 VDVHLSVARNA---RITNKHKAEVTVYANGT-VIRAQEGSESLYASIDLVSDKIARQLRK 100
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K+K + K PN +K EV E + D EL EV+R KYF M
Sbjct: 101 YKEKLNNK----KAPNPVKVGEVTTATAIEGDLIG-------DRTPELPAEVIRMKYFAM 149
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PP+T+ EA+ QLE+VDHDFY FRN++
Sbjct: 150 PPMTIDEALHQLELVDHDFYMFRNKD 175
[33][TOP]
>UniRef100_B9I261 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I261_POPTR
Length = 118
Score = 95.1 bits (235), Expect = 2e-18
Identities = 51/90 (56%), Positives = 62/90 (68%)
Frame = +1
Query: 169 KLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTK 348
KLRKIKDKE+DHGRHMKG N+LK E P+ E E ++ +KDD+ ++E V TK
Sbjct: 28 KLRKIKDKESDHGRHMKGFNKLKVRE---PMSQEVENVADTVSQRKDDDN--LDEAVHTK 82
Query: 349 YFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
YFDMPPLTV EAI +L VDH FY F + E
Sbjct: 83 YFDMPPLTVHEAIVRLGNVDHAFYGFGHAE 112
[34][TOP]
>UniRef100_B1WZE1 Light repressed protein n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WZE1_CYAA5
Length = 201
Score = 94.7 bits (234), Expect = 3e-18
Identities = 64/146 (43%), Positives = 83/146 (56%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS + R + EVT+Y V+RA+E +E Y SIDLVS I R+LRK
Sbjct: 40 VDVHLSV---AKNARITNKHKAEVTVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRK 95
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K+K +H K + +K EV+ E EIE D E L EV+R KYF M
Sbjct: 96 YKEKINNH----KPQSSVKNPEVL-------PEREIEKDLIGDREAALPPEVIRMKYFAM 144
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PP+++ EA QLE+VDHDFY FRN++
Sbjct: 145 PPMSIEEAKHQLELVDHDFYMFRNQD 170
[35][TOP]
>UniRef100_A0YIH4 Light-repressed protein n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YIH4_9CYAN
Length = 212
Score = 94.7 bits (234), Expect = 3e-18
Identities = 66/149 (44%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRT---RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR + EVT+Y V+RA+E +E Y SIDLV+ I R+
Sbjct: 38 VDVHLS------IARNPRINPKQTAEVTIYANGT-VIRAQESSENLYASIDLVADKIARQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
LRK KDK G+H+ P K +EV+ P ED I D + EL EVVRTKY
Sbjct: 91 LRKFKDKR--QGKHLHPP---KLAEVVENQPVI--EDLIG-----DRQPELPPEVVRTKY 138
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
F MPP+ + +A++QL++VDHDFY F N +
Sbjct: 139 FAMPPMNLQDALEQLQLVDHDFYVFCNAD 167
[36][TOP]
>UniRef100_A3IRI7 Light repressed protein n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IRI7_9CHRO
Length = 199
Score = 93.6 bits (231), Expect = 6e-18
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS + R + EVT+Y V+RA+E +E Y SIDLVS I R+LRK
Sbjct: 38 VDVHLSV---AKNARITDKHKAEVTVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRK 93
Query: 181 IKDKETDHGRH--MKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYF 354
K+K +H +K P+ L +EV +ED I D E EL EV+R KYF
Sbjct: 94 YKEKINNHKPQSSVKSPDVLPETEV--------KEDLIG-----DREVELPPEVIRMKYF 140
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MPP+++ EA QLE+VDHDFY FRN++
Sbjct: 141 AMPPMSIEEAKHQLELVDHDFYMFRNQD 168
[37][TOP]
>UniRef100_Q4CAE1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Crocosphaera watsonii WH 8501 RepID=Q4CAE1_CROWT
Length = 199
Score = 93.2 bits (230), Expect = 8e-18
Identities = 62/146 (42%), Positives = 85/146 (58%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS + R + EVT+Y V+RA+E +E Y SIDLVS I R+LRK
Sbjct: 38 VDVHLSV---AKNARITDKHKAEVTVYANGT-VIRAQEGSENLYASIDLVSDKISRQLRK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K+K ++H K + K EV LP ++ +++ D + EL EV+R KYF M
Sbjct: 94 YKEKVSNH----KPQSSAKLPEV---LPEKEVSEDLI----GDRQAELPPEVIRMKYFAM 142
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
P +++ EA QLE+VDHDFY FRN+E
Sbjct: 143 PSMSIEEAKHQLELVDHDFYMFRNQE 168
[38][TOP]
>UniRef100_B5VV76 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Arthrospira maxima CS-328 RepID=B5VV76_SPIMA
Length = 212
Score = 93.2 bits (230), Expect = 8e-18
Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRT---RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR + EVT+Y V+RA+E +E Y SIDLV+ I R+
Sbjct: 38 VDVHLSV------ARNPRINPRQTAEVTIYANGT-VIRAQESSENLYASIDLVADKIARQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
LRK K+K R K K EV+ P D+ D +L EEVVRTKY
Sbjct: 91 LRKYKEK-----RMAKQYQLPKTGEVVAQKPIVDDLIG-------DRTVKLPEEVVRTKY 138
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
F MPP+++ EA++QL+++DHDFY FRN E
Sbjct: 139 FAMPPMSIQEALEQLQLIDHDFYMFRNAE 167
[39][TOP]
>UniRef100_P47908 Light repressed protein A n=1 Tax=Synechococcus sp. PCC 7002
RepID=LRTA_SYNP2
Length = 193
Score = 93.2 bits (230), Expect = 8e-18
Identities = 62/146 (42%), Positives = 81/146 (55%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS R + EVT+Y V+RA+E +E Y SIDLVS I R+LRK
Sbjct: 38 VDVHLSVANNA---RITDKHKAEVTVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K+K H++ K SEV+ ED + D EL EVVR KYF M
Sbjct: 94 YKEKNFGKKTHVQE----KTSEVL-------PEDPVPDNLIGDRAPELPSEVVRMKYFAM 142
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PP+T+ EA++QL++VDHDFY F N++
Sbjct: 143 PPMTIDEALEQLQLVDHDFYMFLNKD 168
[40][TOP]
>UniRef100_Q2JIS4 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIS4_SYNJB
Length = 190
Score = 92.8 bits (229), Expect = 1e-17
Identities = 66/150 (44%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPR---TRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR ++ EVT+Y V+RAEE +E Y SID V+ + RK
Sbjct: 39 VDVNLSV------ARNPRISASQSAEVTVYANGT-VIRAEESSENLYASIDRVADKLARK 91
Query: 172 LRKIKDKETDHG-RHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTK 348
LRK K++ H RH K S + P D + + + EL EVVRTK
Sbjct: 92 LRKYKERNGIHRVRHTP-----KTSVAVAQQPVTDPLNT-------ERQAELPAEVVRTK 139
Query: 349 YFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
YF MPP+TV EA+ QLE+VDHDFY FRN E
Sbjct: 140 YFAMPPMTVQEALHQLELVDHDFYVFRNIE 169
[41][TOP]
>UniRef100_Q2JS19 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=Q2JS19_SYNJA
Length = 191
Score = 92.4 bits (228), Expect = 1e-17
Identities = 66/150 (44%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPR---TRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR + EVT+Y V+RAEE +E Y SID V+ + RK
Sbjct: 39 VDVNLSV------ARNPRISANQSAEVTVYANGT-VIRAEESSENLYASIDRVADKLARK 91
Query: 172 LRKIKDKETDHG-RHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTK 348
LRK K++ H RH K S + P D + + + EL EVVRTK
Sbjct: 92 LRKYKERNGVHRIRHSP-----KTSVAVAQQPLTDPLNT-------ERQAELPPEVVRTK 139
Query: 349 YFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
YF MPP+TV EA+ QLE+VDHDFY FRN E
Sbjct: 140 YFAMPPMTVQEALHQLELVDHDFYVFRNIE 169
[42][TOP]
>UniRef100_B4VJW0 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VJW0_9CYAN
Length = 215
Score = 92.0 bits (227), Expect = 2e-17
Identities = 66/147 (44%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRT---RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR + EVT+Y + V+RA+E +E Y SIDLV+ IQR+
Sbjct: 38 VDVHLSV------ARNPRINTKQTAEVTIYANKT-VIRAQESSEDLYASIDLVADKIQRQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
LRK K+K+ K + K VI P ED I D EL EVVR KY
Sbjct: 91 LRKYKEKQ-----QKKTQTQPKTGAVIHEAPVV--EDLIG-----DRTPELPTEVVRMKY 138
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRN 432
F MPP+T+ EA +QL++VDHDFY FRN
Sbjct: 139 FAMPPMTIEEATEQLQLVDHDFYMFRN 165
[43][TOP]
>UniRef100_C1EFG3 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EFG3_9CHLO
Length = 284
Score = 92.0 bits (227), Expect = 2e-17
Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGR-GPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
VDVR S+RGG + G ++ EVT+YT R+G++R+EE A+ Y SID VS ++RKLR
Sbjct: 118 VDVRCSSRGGADKKTPGGALQKTEVTVYT-RNGIIRSEEEADDLYASIDAVSDKLERKLR 176
Query: 178 KIKDKE-TDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYF 354
K+K+K+ + +H K + + ++ + + DE DE +EVVR K+
Sbjct: 177 KVKEKKISKRPKHNKNAPKAQTDAIVEEMQAADE--------ALADESMDYDEVVREKFH 228
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRN 432
+ TV+EA +++E + H F+AFRN
Sbjct: 229 PVRKCTVYEAAEEMENLGHTFFAFRN 254
[44][TOP]
>UniRef100_B4AWR2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Cyanothece sp. PCC 7822 RepID=B4AWR2_9CHRO
Length = 199
Score = 90.9 bits (224), Expect = 4e-17
Identities = 58/144 (40%), Positives = 83/144 (57%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS + GR + EVT+Y V+RA+E +E Y SIDLVS I R+LRK
Sbjct: 38 VDVHLSV---AKNGRVQNKHKAEVTVYANG-AVIRAQEGSENLYASIDLVSDKIARQLRK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K++ + K + +K +V+ ++ +E D + EL EVVR KYF M
Sbjct: 94 YKERRLEQ----KAYSPVKTGDVV-------QDQPVEGNLIGDRQPELPPEVVRMKYFAM 142
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRN 432
P +++ EA++QL++VDHDFY FRN
Sbjct: 143 PLMSIEEALEQLQLVDHDFYMFRN 166
[45][TOP]
>UniRef100_A0ZCI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Nodularia spumigena CCY9414 RepID=A0ZCI5_NODSP
Length = 213
Score = 90.9 bits (224), Expect = 4e-17
Identities = 62/149 (41%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRT---RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR + EVT++ V+RAEE +E Y SIDLV+ I R+
Sbjct: 38 VDVHLSV------ARNPRITTKQAAEVTIFANG-SVIRAEESSENLYASIDLVADKIARQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
LRK K++ D + N +V++P P + D EL EVVRTKY
Sbjct: 91 LRKYKERLQDQKTNAPPTN-----QVLVPEP-------VAADLIGDRTPELPNEVVRTKY 138
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
F MPP+TV EA +QL++V HDFY F N E
Sbjct: 139 FSMPPMTVAEATEQLQLVGHDFYMFHNAE 167
[46][TOP]
>UniRef100_P74518 Light repressed protein A homolog n=1 Tax=Synechocystis sp. PCC
6803 RepID=LRTA_SYNY3
Length = 191
Score = 90.9 bits (224), Expect = 4e-17
Identities = 58/146 (39%), Positives = 82/146 (56%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS R + EVT+Y V+RA+E +E Y SIDLV+ I R+LRK
Sbjct: 38 VDVHLSVARNA---RITNKHKAEVTVYANGT-VIRAQEGSENLYASIDLVADKIARQLRK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K++ D K +K SE++ E+ +E D EL EV+R KYF M
Sbjct: 94 YKERIQD-----KQHGNVKTSEIV-------EDKPVEENLIGDRAPELPSEVLRMKYFAM 141
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
PP+ + +A++QL++VDHDFY FRN++
Sbjct: 142 PPMAIEDALEQLQLVDHDFYMFRNKD 167
[47][TOP]
>UniRef100_B9YPU1 Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax='Nostoc
azollae' 0708 RepID=B9YPU1_ANAAZ
Length = 214
Score = 90.5 bits (223), Expect = 5e-17
Identities = 59/135 (43%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Frame = +1
Query: 43 RGPRT---RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRH 213
R PR + EVT+Y V+RAEE +E Y SIDLV+ I R+LRK K++ DH
Sbjct: 46 RNPRISTKQAAEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDHKTQ 104
Query: 214 MKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQ 393
N +E + D TP EL EVVRTKYF MPP+T+ EA +Q
Sbjct: 105 PIPTNEAVVAEPVADSLIGDR------TP------ELPGEVVRTKYFPMPPMTLAEAQEQ 152
Query: 394 LEMVDHDFYAFRNEE 438
L++V HDFY FRN E
Sbjct: 153 LQLVGHDFYMFRNAE 167
[48][TOP]
>UniRef100_A5GUZ2 Light repressed protein A homolog n=1 Tax=Synechococcus sp. RCC307
RepID=A5GUZ2_SYNR3
Length = 187
Score = 89.0 bits (219), Expect = 2e-16
Identities = 59/152 (38%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVTL+ V+RA+E ++ Y SIDLV+ + R+L+
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTLFASGT-VIRAQERSQNLYASIDLVAGKLARQLQ 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDD-----EEELIEEVVR 342
+ KD+ HG H D + E E+ P + D EL VVR
Sbjct: 92 RHKDRRQGHGHH------------------SDLQAEPEVMPLQGDMLQGRHAELPAPVVR 133
Query: 343 TKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
KYF MPP++V EAI QLE++DHDFY FRN +
Sbjct: 134 RKYFAMPPMSVEEAIHQLEVIDHDFYVFRNAD 165
[49][TOP]
>UniRef100_B9I248 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I248_POPTR
Length = 115
Score = 89.0 bits (219), Expect = 2e-16
Identities = 53/105 (50%), Positives = 63/105 (60%), Gaps = 14/105 (13%)
Frame = +1
Query: 166 RKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDE--EELI---- 327
RKLRKIKDKE+DHGRHMKG N+LK E P+ E D ++ +KDD+ +EL
Sbjct: 8 RKLRKIKDKESDHGRHMKGFNKLKVRE---PMSQVVENDADTVSQRKDDDNLDELFYMHL 64
Query: 328 --------EEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
V TKYFDMPPLTV EAI +L VDH FY F + E
Sbjct: 65 VTIHSIISSNAVHTKYFDMPPLTVDEAIVRLGNVDHAFYGFGHAE 109
[50][TOP]
>UniRef100_Q10ZL6 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZL6_TRIEI
Length = 215
Score = 87.8 bits (216), Expect = 3e-16
Identities = 59/147 (40%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRT---RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR + EVT+Y V+RA+E +E Y SIDLV+ I R+
Sbjct: 38 VDVHLSV------ARNPRINPKQTAEVTIYANGT-VIRAQESSENLYASIDLVADKIARQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
LRK K+K K + ++ V+ L D + EL EVVRTKY
Sbjct: 91 LRKYKEKRQSKVNKTKTVDLIESQPVVENLIG-------------DRQAELPSEVVRTKY 137
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRN 432
F MP +TV EA++QL+++DHDFY F N
Sbjct: 138 FPMPSMTVEEALEQLQLIDHDFYMFSN 164
[51][TOP]
>UniRef100_A8J8B2 Plastid-specific ribosomal protein 1 n=1 Tax=Chlamydomonas
reinhardtii RepID=A8J8B2_CHLRE
Length = 286
Score = 87.4 bits (215), Expect = 4e-16
Identities = 63/162 (38%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS RGG G + ++ EVT+YT R+GVVR E+ Y +IDLV I+ KL+K
Sbjct: 107 VDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLVCDKIRAKLQK 166
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEED------EIEITPQKDDEEELIE---- 330
IK+K G P R P DEED E+++ Q D+EE ++
Sbjct: 167 IKEKAISRG---AWPGRAG------PKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQFA 217
Query: 331 --------EVVRTKYFDM-PPLTVFEAIDQLEMVDHDFYAFR 429
V+R+K + P+TV EAID LE V H FY FR
Sbjct: 218 ELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFR 259
[52][TOP]
>UniRef100_A5GJ89 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJ89_SYNPW
Length = 195
Score = 84.7 bits (208), Expect = 3e-15
Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV+S + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVASKLARQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEE-ELIEEVVRTKYF 354
+ KD+ +DH H G + SE P +DE + D +E +L VR KYF
Sbjct: 92 RFKDRHSDH-HHSHGH---RASET--PTTESVLDDEAIVESLLDGKEVQLPSPGVRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRN 432
MPP+T+ +A QL+++DHDFY FR+
Sbjct: 146 SMPPMTLEQARQQLDLIDHDFYLFRD 171
[53][TOP]
>UniRef100_Q0ICJ8 Ribosomal subunit interface protein n=1 Tax=Synechococcus sp.
CC9311 RepID=Q0ICJ8_SYNS3
Length = 191
Score = 84.0 bits (206), Expect = 5e-15
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV+S + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVASKLARQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFD 357
+ K++ +DHG H P ++ P+ED E E +L VR KYF
Sbjct: 92 RFKERHSDHG-HRTTPTAAN-DVLLTERPTEDSLLE-------GKEAQLPSPGVRRKYFA 142
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MP +++ EA QLE++DHDFY FR++E
Sbjct: 143 MPAMSLEEARHQLELIDHDFYLFRDKE 169
[54][TOP]
>UniRef100_A4CWK2 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CWK2_SYNPV
Length = 195
Score = 84.0 bits (206), Expect = 5e-15
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV+S + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVASKLARQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEE-ELIEEVVRTKYF 354
+ KD+ +DH H G K SE P ++E + D +E +L VR KYF
Sbjct: 92 RYKDRHSDH-HHSHGH---KASET--PTTEAVLDNEAVVESLLDGKEVQLPSPGVRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MPP+T+ +A QL+++DHDFY FR+ +
Sbjct: 146 AMPPMTLEQARQQLDLIDHDFYVFRDSD 173
[55][TOP]
>UniRef100_Q3AZ51 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Synechococcus sp. CC9902 RepID=Q3AZ51_SYNS9
Length = 195
Score = 83.6 bits (205), Expect = 6e-15
Identities = 57/148 (38%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVVGKLARQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSE-DEEDEIEITPQKDDEEELIEEVVRTKYF 354
K K++ DH H G S + P E +E +E + E +L E VR KYF
Sbjct: 92 KWKERHADH-HHSHG-----HSASLTPSTEEVSDESAVEGSLVDGKEAQLPEPGVRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MPP+T+ +A QL+++DHDFY FR+ +
Sbjct: 146 SMPPMTLDDARHQLDVIDHDFYLFRDSK 173
[56][TOP]
>UniRef100_B4WNT9 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WNT9_9SYNE
Length = 224
Score = 83.6 bits (205), Expect = 6e-15
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS + P+ + EVT++ + VVRAEE +E+ Y SID+V+ + R+LRK
Sbjct: 38 VDVCLSVQNNPRIA--PK-QTAEVTVFLN-NVVVRAEESSESLYASIDMVTDKLTRQLRK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSED-EEDEIEITPQKDDEEELIEEVVRTKYFD 357
K+K D P ++V + + D +I+ + + +L + VVR+KYF
Sbjct: 94 YKEKRRDQDHATVRP-----TDVDATINAPDITSHNADISEVLNHQPKLPDTVVRSKYFA 148
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MPP+TV A++ LE+V HDFY FRN E
Sbjct: 149 MPPMTVQTALENLELVGHDFYMFRNVE 175
[57][TOP]
>UniRef100_Q31KN7 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Synechococcus elongatus PCC 7942 RepID=Q31KN7_SYNE7
Length = 207
Score = 82.4 bits (202), Expect = 1e-14
Identities = 58/145 (40%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
+DV LS + + + EVT+Y V+RAEE E Y SIDLVS I R+L+K
Sbjct: 38 IDVHLSV---AKHAKSNPRQTAEVTIYANGT-VIRAEECNENLYASIDLVSDKITRQLKK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEE-ELIEEVVRTKYFD 357
K+K D KG +L +E ++ D +T + + EL +++VRTKYF
Sbjct: 94 YKEKLRDR----KG--QLSTAET-----ADQLSDGALVTDLLNGRQPELPQDIVRTKYFA 142
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRN 432
MP +TV +A+ QL++VDHDFY FRN
Sbjct: 143 MPAMTVEDALAQLQLVDHDFYMFRN 167
[58][TOP]
>UniRef100_B5IMZ9 Light repressed protein n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IMZ9_9CHRO
Length = 195
Score = 82.4 bits (202), Expect = 1e-14
Identities = 58/151 (38%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRTRR--CEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+EH++ Y SIDLV+S + R+L
Sbjct: 39 DVHLSV------ARNPRVPQQIAEVTMFANGT-VIRAQEHSDNLYASIDLVASKLTRQLN 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSE----VILPLPSEDEEDEIEITPQKDDEEELIEEVVRT 345
+ K++ H RH +R E LP P D E EL VR
Sbjct: 92 RYKERV--HERHQGPVHRSARDEEAGAASLPPPGSSLTD--------GKEPELPSRGVRR 141
Query: 346 KYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
KYF MPP+++ EA+ QLE++DHDFY FR E
Sbjct: 142 KYFAMPPMSLDEALHQLELIDHDFYVFREAE 172
[59][TOP]
>UniRef100_Q7NMI0 Glr0786 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NMI0_GLOVI
Length = 187
Score = 81.6 bits (200), Expect = 2e-14
Identities = 57/149 (38%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRR---CEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRK 171
VDV LS R PR R EVT+ ++RAEE E Y SIDLV+ + R+
Sbjct: 38 VDVYLSV------ARNPRISRSHSAEVTVQASGT-IIRAEEETENLYASIDLVADKLHRQ 90
Query: 172 LRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKY 351
+RK K++ + G ++ + LP+ DE+ L +EVVRTKY
Sbjct: 91 MRKYKERMQKKPKPKTG--LAVANQAPISLPNGDEK-----------ATALPKEVVRTKY 137
Query: 352 FDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
F MPP++ EA+D L +VDHDF+ FRN E
Sbjct: 138 FAMPPMSPEEALDHLALVDHDFFVFRNAE 166
[60][TOP]
>UniRef100_A2C0K6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. NATL1A RepID=A2C0K6_PROM1
Length = 194
Score = 81.6 bits (200), Expect = 2e-14
Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV++ + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVANKLARQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFD 357
K K++ H H + +E I S D + + E L VR KYF+
Sbjct: 92 KYKERHNSHNVHNNQSTKSVQNEKIENFSSSDH------SLIEGKEPHLPNPGVRRKYFE 145
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRNEE 438
M P+T+ +A QL+++DHDFY FR EE
Sbjct: 146 MDPMTIEQARVQLDLIDHDFYLFREEE 172
[61][TOP]
>UniRef100_Q063T8 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. BL107 RepID=Q063T8_9SYNE
Length = 195
Score = 81.6 bits (200), Expect = 2e-14
Identities = 56/146 (38%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVVGKLARQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSE-DEEDEIEITPQKDDEEELIEEVVRTKYF 354
K K++ DH H G S + P E +E +E + E +L E VR KYF
Sbjct: 92 KWKERHADH-HHSHG-----HSASLTPSTEEVSDESVVEGSLVDGKEAQLPEPGVRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRN 432
MPP+T+ +A QL+++DHDFY F++
Sbjct: 146 SMPPMTLDDARHQLDVIDHDFYLFKD 171
[62][TOP]
>UniRef100_B9ND14 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9ND14_POPTR
Length = 102
Score = 81.6 bits (200), Expect = 2e-14
Identities = 48/101 (47%), Positives = 59/101 (58%), Gaps = 14/101 (13%)
Frame = +1
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDE--EELI-------- 327
KIKDKE+DHGRHMKG N+ K E P+ E D ++ +KDD+ +EL
Sbjct: 2 KIKDKESDHGRHMKGFNKFKVRE---PMSQVVENDADTVSQRKDDDNLDELFYMHLVTIH 58
Query: 328 ----EEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
V TKYFDMPP+TV EAI +L VDH FY FR+ E
Sbjct: 59 SIISSNAVHTKYFDMPPVTVDEAIVRLGNVDHAFYGFRHAE 99
[63][TOP]
>UniRef100_Q5N179 Light repressed protein A homolog n=1 Tax=Synechococcus elongatus
PCC 6301 RepID=Q5N179_SYNP6
Length = 207
Score = 80.9 bits (198), Expect = 4e-14
Identities = 57/145 (39%), Positives = 82/145 (56%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
+DV LS + + + EVT+Y V+RAEE E Y SIDLVS I R+L+K
Sbjct: 38 IDVHLSV---AKHAKSNPRQTAEVTIYANGT-VIRAEECNENLYASIDLVSDKITRQLKK 93
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEE-ELIEEVVRTKYFD 357
K++ D KG +L +E ++ D +T + + EL +++VRTKYF
Sbjct: 94 YKEELRDR----KG--QLSTAET-----ADQLSDGALVTDLLNGRQPELPQDIVRTKYFA 142
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRN 432
MP +TV +A+ QL++VDHDFY FRN
Sbjct: 143 MPAMTVEDALAQLQLVDHDFYMFRN 167
[64][TOP]
>UniRef100_Q7U8F3 Light repressed protein A homolog n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U8F3_SYNPX
Length = 195
Score = 80.5 bits (197), Expect = 5e-14
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDL +S + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLAASKLARQLR 91
Query: 178 KIKDKETDHGR-HMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYF 354
+ K++ +DH H + +E + ++ +++ + + E EL + VR KYF
Sbjct: 92 RWKERHSDHHHSHGHSASTTPATEAVT------DDSQVDGSLLQGREAELPDPGVRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MPP+++ EA QL+++DHDFY FR+++
Sbjct: 146 AMPPMSLEEARRQLDLIDHDFYLFRDKD 173
[65][TOP]
>UniRef100_A2BPM8 Light repressed protein A n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPM8_PROMS
Length = 194
Score = 80.5 bits (197), Expect = 5e-14
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK--ETDHGR 210
+ PR + EVT++ V+RAEE E Y SIDLVS+ + RKLRK K++ +T H +
Sbjct: 46 KNPRVSFQTAEVTIFANGT-VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNK 104
Query: 211 HMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAID 390
K + L P+ S + + ++ E L E ++ KYF+M P++ EA
Sbjct: 105 QFKNKDSL-------PIESMESNFLDKALFKEGTEASLPEPSIKNKYFEMTPISSDEARK 157
Query: 391 QLEMVDHDFYAFRNEE 438
QL+++DHDFY FRN++
Sbjct: 158 QLDLIDHDFYVFRNKK 173
[66][TOP]
>UniRef100_C1N7A9 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1N7A9_9CHLO
Length = 245
Score = 80.5 bits (197), Expect = 5e-14
Identities = 57/149 (38%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV S R E +G + +VT+YT R+GVVR+EE A+ Y SID VS I+RKLRK
Sbjct: 84 VDVTCSARS--EKQQGGDLQMTQVTVYT-RNGVVRSEEEADNLYASIDAVSDKIERKLRK 140
Query: 181 IKDKETDH--GRHMKGPNRLKFSEVILPLPSEDE--EDEIEITPQKDDEEELIEEVVRTK 348
IK+K+ G+ P + + ++++ DE DEIE EE V K
Sbjct: 141 IKEKKNSKKAGKTKANP-KAQTADIVAAAAEADEARADEIE-----------FEETVGVK 188
Query: 349 YFDMPPLTVFEAIDQLEMVDHDFYAFRNE 435
Y + T EA +++E + H FYAF+N+
Sbjct: 189 YMAVKTSTAMEAAEEMESLGHVFYAFKNK 217
[67][TOP]
>UniRef100_Q3AI28 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Synechococcus sp. CC9605 RepID=Q3AI28_SYNSC
Length = 195
Score = 80.1 bits (196), Expect = 7e-14
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDL + + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLAAGKLARQLR 91
Query: 178 KIKDKETDHGR-HMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYF 354
+ K++ +DH H + ++V+ ++ +E + + E EL + VR KYF
Sbjct: 92 RWKERHSDHHHSHGHSASHTPSTDVV------NDASPVEASLLQGREAELPDPGVRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MPP+ + EA QL+++DHDFY FR +E
Sbjct: 146 AMPPMGLEEARRQLDLIDHDFYLFREKE 173
[68][TOP]
>UniRef100_A3PBB8 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9301 RepID=A3PBB8_PROM0
Length = 194
Score = 80.1 bits (196), Expect = 7e-14
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK--ETDHGR 210
+ PR + EVT++ V+RAEE E Y SIDLVS+ + RKLRK K++ +T H +
Sbjct: 46 KNPRVSFQTAEVTIFANGT-VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNK 104
Query: 211 HMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAID 390
K + L P+ S + + ++ E L E ++ KYF+M P++ EA
Sbjct: 105 QFKNKDSL-------PIESMESNFLDKAFFKEGTEASLPEPSIKNKYFEMTPISSDEARK 157
Query: 391 QLEMVDHDFYAFRNEE 438
QL+++DHDFY FRN++
Sbjct: 158 QLDLIDHDFYVFRNKK 173
[69][TOP]
>UniRef100_Q1PJW9 Light repressed protein A n=1 Tax=uncultured Prochlorococcus
marinus clone HF10-88F10 RepID=Q1PJW9_PROMA
Length = 194
Score = 79.7 bits (195), Expect = 9e-14
Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 6/138 (4%)
Frame = +1
Query: 43 RGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK--ETDHGR 210
+ PR + EVT++ V+RAEE E Y SIDLVS+ + RKLRK K++ +T H
Sbjct: 46 KNPRVSFQTAEVTIFANGT-VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNN 104
Query: 211 HMKGPNRLKFSEVILPLPSEDEEDEI--EITPQKDDEEELIEEVVRTKYFDMPPLTVFEA 384
K N+ F PSE+ E E + E L E ++ KYF+M P++ EA
Sbjct: 105 QFK--NKESF-------PSENTESRFLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEA 155
Query: 385 IDQLEMVDHDFYAFRNEE 438
QL+++DHDFY FRN++
Sbjct: 156 RKQLDLIDHDFYVFRNKK 173
[70][TOP]
>UniRef100_Q46H11 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Prochlorococcus marinus str. NATL2A
RepID=Q46H11_PROMT
Length = 194
Score = 79.3 bits (194), Expect = 1e-13
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV++ + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVANKLARQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFD 357
K K++ H H + +E S D +T K E L VR KYF+
Sbjct: 92 KYKERHNSHNVHHNQSTKSVQNEDTQNFSSSDHS----LTEGK--EPHLPSPGVRRKYFE 145
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRNEE 438
M P+ + +A QL+++DHDFY FR EE
Sbjct: 146 MTPMNIEQARVQLDLIDHDFYLFREEE 172
[71][TOP]
>UniRef100_Q05SE1 Putative uncharacterized protein n=1 Tax=Synechococcus sp. RS9916
RepID=Q05SE1_9SYNE
Length = 195
Score = 79.0 bits (193), Expect = 2e-13
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV++ + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVANKLSRQLR 91
Query: 178 KIKDKETDHGR-HMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYF 354
+ K++ +DH H + +E +L ++ ++ + E L + VR KYF
Sbjct: 92 RYKERHSDHHHSHGHRASTTPTTEAVL------DDSAVDGSLLDGKEAHLPDPGVRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRN 432
MPP++V EA QL+++DHDF+ FR+
Sbjct: 146 PMPPMSVEEARHQLDLIDHDFFLFRD 171
[72][TOP]
>UniRef100_Q7V2R9 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
subsp. pastoris str. CCMP1986 RepID=Q7V2R9_PROMP
Length = 194
Score = 78.6 bits (192), Expect = 2e-13
Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
Frame = +1
Query: 43 RGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHM 216
+ PR + EVT++ ++RAEE E Y SIDLVS+ + RKLRK K++ +
Sbjct: 46 KNPRVSFQTAEVTIFANGT-IIRAEEKTENLYSSIDLVSNKLCRKLRKYKERHNKKLHNN 104
Query: 217 KGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEE-ELIEEVVRTKYFDMPPLTVFEAIDQ 393
N+ +S I +E D I+ ++ E L E ++ KYF+M P+++ EA Q
Sbjct: 105 LVKNKNSYSNAI------EESDSIDKDIFNEEREVRLPEPSIKKKYFEMIPISLEEARKQ 158
Query: 394 LEMVDHDFYAFRNE 435
L+ +DHDFY FRN+
Sbjct: 159 LDFIDHDFYLFRNK 172
[73][TOP]
>UniRef100_D0CH01 Sigma 54 modulation protein n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CH01_9SYNE
Length = 195
Score = 78.6 bits (192), Expect = 2e-13
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDL + + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLAAGKLARQLR 91
Query: 178 KIKDKETDHGR-HMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYF 354
+ K++ +DH H + ++V+ ++ +E + + E EL + VR KYF
Sbjct: 92 RWKERHSDHHHSHGHSASHTPSTDVV------NDASPVESSLLQGREAELPDPGVRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
MPP+ + +A QL+++DHDFY FR +E
Sbjct: 146 AMPPMGLEDARRQLDLIDHDFYLFREKE 173
[74][TOP]
>UniRef100_A2CBL6 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9303 RepID=A2CBL6_PROM3
Length = 195
Score = 78.2 bits (191), Expect = 3e-13
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 2/126 (1%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG--PNRLKF 240
EVT++ V+RA+E +E Y SIDLV+S + R+LR+ K++ +DH H G +
Sbjct: 56 EVTVFANGT-VIRAQERSENLYASIDLVASKLCRQLRRYKERHSDH-HHSPGHRASSTPT 113
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+E ++ +E I+ + E L VR KYF MPP++V +A QL+++DHDFY
Sbjct: 114 TEAVI------DEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARHQLDLIDHDFY 167
Query: 421 AFRNEE 438
FR +E
Sbjct: 168 LFREQE 173
[75][TOP]
>UniRef100_A3ZA02 Light repressed protein A-like protein n=1 Tax=Synechococcus sp.
RS9917 RepID=A3ZA02_9SYNE
Length = 195
Score = 78.2 bits (191), Expect = 3e-13
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SIDLV+S + R+LR
Sbjct: 39 DVHLSV------ARNPRVPQQTAEVTVFANGT-VIRAQERSENLYASIDLVASKLCRQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFD 357
+ K++ +DH H +R + P + + I+ + E +L + VR KYF
Sbjct: 92 RFKERHSDH--HHSNGHRASETP---PTDAIADAAPIDGSLLDGKEVQLPDPGVRRKYFA 146
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRN 432
MPP+++ EA QL+++DHDFY FR+
Sbjct: 147 MPPMSLEEARHQLDVIDHDFYLFRD 171
[76][TOP]
>UniRef100_A2BV60 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9515 RepID=A2BV60_PROM5
Length = 194
Score = 77.8 bits (190), Expect = 3e-13
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSE 246
EVT++ ++RAEE E Y SIDLVS+ + RKLRK K++ + + N+ F+
Sbjct: 56 EVTIFASGT-IIRAEEKTENLYSSIDLVSNKLCRKLRKYKERHYKNLNYNLEKNKHSFTN 114
Query: 247 VILPLPSEDEEDEIEITPQKDDEE-ELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYA 423
+ + D I+ D E +L E ++ KYF+M P+++ EA QL+++DHDFY
Sbjct: 115 ------TNEHLDSIDKNIFNDKREAKLPEPSIKNKYFEMIPISLEEARKQLDLIDHDFYV 168
Query: 424 FRNEE 438
FRN++
Sbjct: 169 FRNKK 173
[77][TOP]
>UniRef100_Q7V8W0 Light repressed protein A homolog n=1 Tax=Prochlorococcus marinus
str. MIT 9313 RepID=Q7V8W0_PROMM
Length = 195
Score = 77.4 bits (189), Expect = 5e-13
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 2/126 (1%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG--PNRLKF 240
EVT++ V+RA+E +E Y SIDLV+S + R+LR+ K++ +DH H G +
Sbjct: 56 EVTVFANGT-VIRAQERSENLYASIDLVASKLCRQLRRYKERHSDH-HHSPGHRASSTPT 113
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+E ++ +E I+ + E L VR KYF MPP++V +A QL+++DHDFY
Sbjct: 114 TEAVI------DEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARYQLDLIDHDFY 167
Query: 421 AFRNEE 438
FR +E
Sbjct: 168 LFREQE 173
[78][TOP]
>UniRef100_Q1PKX8 Light repressed protein A-like protein n=1 Tax=uncultured
Prochlorococcus marinus clone ASNC2259
RepID=Q1PKX8_PROMA
Length = 194
Score = 77.0 bits (188), Expect = 6e-13
Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK--ETDHGR 210
+ PR + EVT++ V+RAEE E Y SIDLVS+ + RKLRK K++ +T H +
Sbjct: 46 KNPRVSFQTAEVTIFANGT-VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNK 104
Query: 211 HMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAID 390
K + L P+ S + + + E L + ++ KYF+M P++ EA
Sbjct: 105 QFKNKDSL-------PIESMESNFLDKAFFIEGTEASLPKPSIKNKYFEMTPISSDEARK 157
Query: 391 QLEMVDHDFYAFRNEE 438
QL+++DHDFY FRN++
Sbjct: 158 QLDLIDHDFYVFRNKK 173
[79][TOP]
>UniRef100_Q31CD8 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Prochlorococcus marinus str. MIT 9312
RepID=Q31CD8_PROM9
Length = 194
Score = 76.6 bits (187), Expect = 8e-13
Identities = 47/124 (37%), Positives = 69/124 (55%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSE 246
EVT++ V+RAEE E Y SIDLVS+ + RKLRK K++ + N F
Sbjct: 56 EVTIFANGT-VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNYKTNYINQFKNNESF-- 112
Query: 247 VILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAF 426
P+ S D + ++ E L E ++ KYF+M P++ EA QL+++DHDFY F
Sbjct: 113 ---PIESADSNVLDKTLFKQGREASLPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVF 169
Query: 427 RNEE 438
RN++
Sbjct: 170 RNKK 173
[80][TOP]
>UniRef100_A8G3B2 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3B2_PROM2
Length = 194
Score = 76.6 bits (187), Expect = 8e-13
Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Frame = +1
Query: 43 RGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHM 216
+ PR + EVT++ V+RAEE E Y SIDLVS+ + RKLRK K++ +
Sbjct: 46 KNPRVSFQTAEVTIFANGT-VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKIFHNN 104
Query: 217 KGPNRLKFSEVILPLPSEDEEDEIEITPQKDD-EEELIEEVVRTKYFDMPPLTVFEAIDQ 393
+ N+ F L ++ E ++ KD E L E ++ KYF+M P++ EA Q
Sbjct: 105 QFKNKESF------LIADTESRFLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQ 158
Query: 394 LEMVDHDFYAFRNEE 438
L+++DHDFY FRN +
Sbjct: 159 LDLIDHDFYVFRNNK 173
[81][TOP]
>UniRef100_B9P0E9 Light repressed protein A n=1 Tax=Prochlorococcus marinus str. MIT
9202 RepID=B9P0E9_PROMA
Length = 194
Score = 76.6 bits (187), Expect = 8e-13
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Frame = +1
Query: 43 RGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHM 216
+ PR + EVT++ V+RAEE E Y SIDLVS+ + RKLRK K++ +
Sbjct: 46 KNPRVSFQTAEVTIFANGT-VIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKIFHNN 104
Query: 217 KGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQL 396
+ N+ F P+ + E + E L E ++ KYF+M P++ EA QL
Sbjct: 105 QFKNKESF-----PIADTESRFLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQL 159
Query: 397 EMVDHDFYAFRNEE 438
+++DHDFY FRN +
Sbjct: 160 DLIDHDFYVFRNSK 173
[82][TOP]
>UniRef100_C1CWW9 Putative sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus deserti VCD115 RepID=C1CWW9_DEIDV
Length = 188
Score = 76.3 bits (186), Expect = 1e-12
Identities = 48/127 (37%), Positives = 67/127 (52%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
R R EV L +G++RAEEH Y +ID S +++R+LRK K R+MK
Sbjct: 52 RRNRVEVQLNVP-NGIIRAEEHHSDMYAAIDKASDVLERQLRKFKT------RYMKQ--- 101
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+ V P P E D + DD E + E+VR K FDM P++ +A+ Q+E + H
Sbjct: 102 -RHETVPQPGPGPAEAD---VNAGLDDVSEFMPEIVRQKRFDMRPMSPEDAVTQMEALGH 157
Query: 412 DFYAFRN 432
DFY F N
Sbjct: 158 DFYVFMN 164
[83][TOP]
>UniRef100_C2D8Z3 Possible ribosome-associated inhibitor A n=1 Tax=Atopobium vaginae
DSM 15829 RepID=C2D8Z3_9ACTN
Length = 192
Score = 76.3 bits (186), Expect = 1e-12
Identities = 46/128 (35%), Positives = 65/128 (50%)
Frame = +1
Query: 49 PRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPN 228
P + CEVT+Y R+ VVR E +E Y +ID S + R+LRK K + D + + P
Sbjct: 52 PDRKTCEVTVYV-RNNVVRVEASSEDMYAAIDAASDKVTRQLRKYKTRIIDRKQRSQAP- 109
Query: 229 RLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVD 408
P PS+D D I+ D +VR KY D+ P+T EA+ Q +++
Sbjct: 110 --------APAPSKDLSDLIDEVADDD-------MLVREKYIDLHPMTEEEALVQTDLIG 154
Query: 409 HDFYAFRN 432
HDFY F N
Sbjct: 155 HDFYVFEN 162
[84][TOP]
>UniRef100_Q1IYK5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Deinococcus geothermalis DSM 11300
RepID=Q1IYK5_DEIGD
Length = 186
Score = 75.1 bits (183), Expect = 2e-12
Identities = 46/127 (36%), Positives = 65/127 (51%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
R R EV L +G++RAEEH Y +ID S +++R+LRK K K H + P
Sbjct: 52 RRNRVEVQLNVP-NGIIRAEEHHADMYAAIDRASDVLERQLRKFKTKYLRHRQEAAPP-- 108
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
P P E D D+ E E+VRTK FD+ P++ +A+ Q+E + H
Sbjct: 109 --------PQPGLAEAD----VNAGLDDTEFRPEIVRTKRFDLRPMSPEDAVTQMEALGH 156
Query: 412 DFYAFRN 432
DFY F+N
Sbjct: 157 DFYVFKN 163
[85][TOP]
>UniRef100_A9BE19 Light repressed protein A-like protein n=1 Tax=Prochlorococcus
marinus str. MIT 9211 RepID=A9BE19_PROM4
Length = 197
Score = 75.1 bits (183), Expect = 2e-12
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSE 246
EVT++ V+RA+E ++ Y SIDLV++ + R+LRK K++ +DH H G S
Sbjct: 56 EVTVFANGT-VIRAQERSQNLYASIDLVATKLCRQLRKYKERHSDH-HHSHG-----HSA 108
Query: 247 VILPLPSEDEEDE-IEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYA 423
+ P ED+ I+ + + E L +R KYF MPP++ +A QL+++DHDFY
Sbjct: 109 SLTPTTEAVVEDKAIDSSLIQGKEAHLPTPGIRRKYFSMPPMSTEQARHQLDLIDHDFYM 168
Query: 424 FRNEE 438
F+ E
Sbjct: 169 FKEIE 173
[86][TOP]
>UniRef100_A3YVD7 Light repressed protein A-like protein n=1 Tax=Synechococcus sp. WH
5701 RepID=A3YVD7_9SYNE
Length = 195
Score = 75.1 bits (183), Expect = 2e-12
Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRTRR--CEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS R PR + EVT++ V+RA+E +E Y SID+V+ + R+LR
Sbjct: 39 DVHLSV------ARNPRVAQQTAEVTVFANGV-VIRAQERSENLYASIDMVAGKLSRQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIE-ITPQK---DDEEELIEEVVRT 345
+ KD+ ++H N + + E+ +E + P D E L VR
Sbjct: 92 RYKDRLSNHHGAGSPAN----------VGDDTEQPSLEGVLPNDLIGDREPALPVPAVRR 141
Query: 346 KYFDMPPLTVFEAIDQLEMVDHDFYAFRNE 435
KYF MP +++ +A+ QLE++DHDFY FR E
Sbjct: 142 KYFSMPAMSLDQALHQLELIDHDFYVFREE 171
[87][TOP]
>UniRef100_Q7VDH9 Ribosome-associated protein Y n=1 Tax=Prochlorococcus marinus
RepID=Q7VDH9_PROMA
Length = 195
Score = 74.3 bits (181), Expect = 4e-12
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Frame = +1
Query: 4 DVRLSTRGGGEFGRGPRT--RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
DV LS + PR + EVT++ V+RA+E ++ Y SIDLVS+ + R+LR
Sbjct: 39 DVHLSV------AKNPRVPQQTAEVTVFANGT-VIRAQERSQNLYASIDLVSNKLCRQLR 91
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDE-IEITPQKDDEEELIEEVVRTKYF 354
+ K++ +DH H +R I P E ED+ I + + E +L + +R KYF
Sbjct: 92 RYKERHSDH--HHSPGHRAS----ITPTTEEVLEDKSINGSLVEGKEAKLPKPGIRRKYF 145
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
M P+ + +A QL+++DHDFY F+ E
Sbjct: 146 PMHPMNIEQAQHQLDLIDHDFYLFKEAE 173
[88][TOP]
>UniRef100_C8WMZ8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Eggerthella lenta DSM 2243 RepID=C8WMZ8_9ACTN
Length = 191
Score = 72.4 bits (176), Expect = 1e-11
Identities = 46/130 (35%), Positives = 74/130 (56%)
Frame = +1
Query: 49 PRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPN 228
PR CEVTL TK H ++R EEH E Y +ID+ ++ + R+LRK K K D R ++ +
Sbjct: 51 PRPAVCEVTLRTKGH-IIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVD--RKLRAAD 107
Query: 229 RLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVD 408
E I PS E +++ Q+ + +EVVR K + PLT EA+ +++++
Sbjct: 108 -----ETIRIEPSAAGELDVDGLMQELSD----DEVVRVKTIEFEPLTEEEALVKIDLLG 158
Query: 409 HDFYAFRNEE 438
HDF+A+ + +
Sbjct: 159 HDFFAYTDRD 168
[89][TOP]
>UniRef100_C8W7H2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Atopobium parvulum DSM 20469 RepID=C8W7H2_ATOPD
Length = 196
Score = 72.0 bits (175), Expect = 2e-11
Identities = 46/128 (35%), Positives = 69/128 (53%)
Frame = +1
Query: 49 PRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPN 228
P + EVT++ R+ VVR ++ Y +ID + + R+LRK K K + HMK
Sbjct: 52 PDRKTTEVTVFV-RNNVVRVTASSDDMYAAIDEAADKVSRQLRKYKTKVVERRHHMK--- 107
Query: 229 RLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVD 408
SE + L ED + IEI E+L +++VR KY D+ P+T EA+ Q +++
Sbjct: 108 ----SERGIALTQEDLANLIEIPA-----EDLDDQLVREKYVDLEPMTEEEALVQTDLLG 158
Query: 409 HDFYAFRN 432
HDFY F N
Sbjct: 159 HDFYVFVN 166
[90][TOP]
>UniRef100_Q9RVE7 Protein DR_1082 n=1 Tax=Deinococcus radiodurans RepID=UA82_DEIRA
Length = 191
Score = 72.0 bits (175), Expect = 2e-11
Identities = 46/127 (36%), Positives = 68/127 (53%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
R R EV L G++RAEEH Y +ID S +++R+LRK K R+MK R
Sbjct: 52 RRNRVEVQLNVPG-GIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QR 102
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+ LP P+E E + DD E E+VR K F++ P++ +A+ Q+E + H
Sbjct: 103 QEGRPEPLPGPAEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGH 162
Query: 412 DFYAFRN 432
DFY F++
Sbjct: 163 DFYVFQD 169
[91][TOP]
>UniRef100_B8GDB0 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Chloroflexus aggregans DSM 9485 RepID=B8GDB0_CHLAD
Length = 197
Score = 69.7 bits (169), Expect = 9e-11
Identities = 40/127 (31%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMK-GPNRLK 237
R + TL + ++RAEE A Y +ID V ++QR++++ KDK R ++ N L
Sbjct: 54 RVQTTLVAEHGVILRAEERAADLYAAIDAVQEVLQRQIQRYKDKYWRRSRELRRATNGLT 113
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
+E + +E E + E E + +V+RTK F + P+ V +AI+Q+E++ H F
Sbjct: 114 PAEEVAIAEAETEAMTAPV------ETEPVAKVIRTKTFRLRPMFVDDAIEQMELLGHTF 167
Query: 418 YAFRNEE 438
+ F++ E
Sbjct: 168 FVFQDAE 174
[92][TOP]
>UniRef100_Q7XYJ6 Ribosomal protein rpS22 (Fragment) n=1 Tax=Bigelowiella natans
RepID=Q7XYJ6_BIGNA
Length = 170
Score = 69.3 bits (168), Expect = 1e-10
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 13/139 (9%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVT+Y K V+R + + Y SIDLV+ ++ RKLRK K+++ G+ R +
Sbjct: 15 KIEVTVYVKDSKVIRGSVSSVSEYSSIDLVTDLVNRKLRKYKERK--EGKRTASGVRTFY 72
Query: 241 SEVILPLPSEDEEDEIEITPQKDD--EEEL---------IEEV--VRTKYFDMPPLTVFE 381
+ I S+ + E +DD +EE +E+V VR K F MPP+++ +
Sbjct: 73 TNDI----SDSSDVEGAAVQGQDDVQQEEYSGIPEGYAPVEDVSVVRRKKFPMPPISIED 128
Query: 382 AIDQLEMVDHDFYAFRNEE 438
A L+ +DHDFY FRN E
Sbjct: 129 ATLCLDYLDHDFYVFRNSE 147
[93][TOP]
>UniRef100_A9KS11 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Clostridium phytofermentans ISDg RepID=A9KS11_CLOPH
Length = 178
Score = 68.6 bits (166), Expect = 2e-10
Identities = 45/127 (35%), Positives = 67/127 (52%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + +VRAE+ + Y SIDLV +I+R+L+K K K D + N
Sbjct: 48 QKIEVTIPMKGN-IVRAEQVSNDMYASIDLVEEVIERQLKKYKSKLKDMNQSAANFNPSF 106
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F +V L + +E++I IT R K F M P+ EA Q+E++ H+F
Sbjct: 107 FEDV---LNEDSDEEDINIT--------------RVKRFAMKPMDAEEACVQMELLGHNF 149
Query: 418 YAFRNEE 438
Y FRN E
Sbjct: 150 YVFRNAE 156
[94][TOP]
>UniRef100_B0A7Y1 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0A7Y1_9CLOT
Length = 187
Score = 68.2 bits (165), Expect = 3e-10
Identities = 45/125 (36%), Positives = 68/125 (54%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ ++RAE+ E Y +ID+V + ++LR+ K+K +KG + K
Sbjct: 54 QKIEVTIIPINGPIIRAEDSEENLYAAIDVVYDKLNKQLRRYKNK-------LKGKYQSK 106
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
E I ED E KD E +++ E R K FDM P++ EA+ Q+E+V HDF
Sbjct: 107 GQESIRFQNIEDNAAE-----DKDGEFDIVIE--RHKKFDMKPMSPEEAVLQMELVGHDF 159
Query: 418 YAFRN 432
Y FRN
Sbjct: 160 YMFRN 164
[95][TOP]
>UniRef100_Q04E96 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Oenococcus oeni PSU-1 RepID=Q04E96_OENOB
Length = 190
Score = 67.8 bits (164), Expect = 4e-10
Identities = 44/129 (34%), Positives = 71/129 (55%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + +RAEE Y ++DLVS+ + R++RK K + R +G
Sbjct: 50 KTFKIEVTIPLP-YLTLRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRE-RGFKG 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+ F+E I P+PS+ ED+ K D V+R K + P+ + EA+ Q+EM+DH
Sbjct: 108 IDFNEAIDPVPSDTNEDK------KID-------VIRRKNLSLKPMDIEEAVLQMEMLDH 154
Query: 412 DFYAFRNEE 438
DF+ F N +
Sbjct: 155 DFFLFLNSD 163
[96][TOP]
>UniRef100_A0NI00 Ribosomal subunit interface protein n=1 Tax=Oenococcus oeni ATCC
BAA-1163 RepID=A0NI00_OENOE
Length = 190
Score = 67.8 bits (164), Expect = 4e-10
Identities = 44/129 (34%), Positives = 71/129 (55%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + +RAEE Y ++DLVS+ + R++RK K + R +G
Sbjct: 50 KTFKIEVTIPLP-YLTLRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRE-RGFKG 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+ F+E I P+PS+ ED+ K D V+R K + P+ + EA+ Q+EM+DH
Sbjct: 108 IDFNEAIDPVPSDTNEDK------KID-------VIRRKTLSLKPMDIEEAVLQMEMLDH 154
Query: 412 DFYAFRNEE 438
DF+ F N +
Sbjct: 155 DFFLFLNSD 163
[97][TOP]
>UniRef100_C4G2X0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4G2X0_ABIDE
Length = 175
Score = 67.4 bits (163), Expect = 5e-10
Identities = 43/127 (33%), Positives = 67/127 (52%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K H ++RAE+ ++ Y SIDL+ II+R+LR+ K K D +
Sbjct: 48 QKVEVTVPVKGH-IIRAEQVSDDMYVSIDLIEDIIERQLRRYKTKIVDSKQSASN----- 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F+ + Q DD E+ +V+RTK F + P+ EA Q+E+++H F
Sbjct: 102 FTSAFM---------------QDDDYEDEDVKVIRTKRFAVKPMDPEEACVQMELLNHSF 146
Query: 418 YAFRNEE 438
Y FRN E
Sbjct: 147 YVFRNAE 153
[98][TOP]
>UniRef100_B6FVY1 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
13275 RepID=B6FVY1_9CLOT
Length = 194
Score = 67.4 bits (163), Expect = 5e-10
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGP--NRL 234
+ EVT+ K V+RAEE E Y +IDLV ++ +L+K KDK + K +
Sbjct: 57 KIEVTIAPKNGHVIRAEESQENLYPAIDLVVDKLKIQLKKYKDKMQKRHQENKSIRFDSP 116
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
+ ++ IL ED EDE+ I + R K ++ P++ EA+ Q+E+V HD
Sbjct: 117 EINDSILEEDLEDFEDELFI-------------IKRRKRINIKPMSEEEAVLQMELVGHD 163
Query: 415 FYAFRNEE 438
FY FRN+E
Sbjct: 164 FYIFRNDE 171
[99][TOP]
>UniRef100_C4V4X1 Ribosome-associated inhibitor A n=1 Tax=Selenomonas flueggei ATCC
43531 RepID=C4V4X1_9FIRM
Length = 181
Score = 67.0 bits (162), Expect = 6e-10
Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVT R ++R EEH+E Y SIDLV ++R++RK K K R +G + +
Sbjct: 50 KVEVTAPVARGILLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLAR--RFRQGGFKAEA 107
Query: 241 SEVIL-PLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
E P+P EDE + VV+TK F + P+ V EAI Q+ +++H F
Sbjct: 108 VETFAQPIPEEDE----------------LYPVVKTKRFTLQPMDVQEAIMQMNLLNHHF 151
Query: 418 YAFRNEE 438
+ FRN E
Sbjct: 152 FVFRNAE 158
[100][TOP]
>UniRef100_B0P2P9 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
RepID=B0P2P9_9CLOT
Length = 179
Score = 67.0 bits (162), Expect = 6e-10
Identities = 48/146 (32%), Positives = 77/146 (52%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
V+V LS + G + + EVT+ K H ++RAEE +E Y SIDLV +I+R++R+
Sbjct: 40 VNVTLSVQKGRQ--------KIEVTIPMKGH-IIRAEEGSEDMYVSIDLVVDVIERQIRR 90
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K + + K+ ++ED++E DDE +I R+K F +
Sbjct: 91 YKTRLMNQ----------KYDGTSFKQEFMEQEDDVE-----DDEIRII----RSKKFAI 131
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
P+ V EA Q+E++ HDF+ FRN +
Sbjct: 132 KPMDVEEACVQMELLGHDFFVFRNAD 157
[101][TOP]
>UniRef100_A6BHR0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM
13814 RepID=A6BHR0_9FIRM
Length = 178
Score = 66.6 bits (161), Expect = 8e-10
Identities = 48/127 (37%), Positives = 70/127 (55%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K G+VR+E+ + Y SIDLV +I+R+LRK K+K R +G N
Sbjct: 48 QKIEVTIPVKG-GLVRSEQESSDMYVSIDLVEEVIERQLRKYKNKLV--AREQEGGN--- 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F + D ED IE D+ E+ ++VRTK F P+ +A Q+E++ HDF
Sbjct: 102 FKQEFF-----DAEDNIE------DDGEI--KIVRTKKFGFKPMYPEDACVQMELLGHDF 148
Query: 418 YAFRNEE 438
Y F N E
Sbjct: 149 YVFCNAE 155
[102][TOP]
>UniRef100_B8BRE6 Light-repressed protein a n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8BRE6_THAPS
Length = 198
Score = 66.6 bits (161), Expect = 8e-10
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Frame = +1
Query: 103 RAEEHAETTYGSIDLVSSIIQRKLRKIKDKETD--HGRHMKGPNRLKFSEVILPLPSEDE 276
R E + Y SIDLV++ + RKLRK K++ D HG G N +EV+ + ++
Sbjct: 72 RVAESSPDMYASIDLVAARLARKLRKYKERRLDGYHGGPNMGEN---IAEVLNAIEVDES 128
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
ED E D ++ ++ +V T P+++ EAI L+ +DHDFY FR+EE
Sbjct: 129 EDGAEEESYIDPDQAVVTKVKST------PISIKEAIFALDYIDHDFYVFRDEE 176
[103][TOP]
>UniRef100_UPI00017F5F53 putative RNA-binding protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F5F53
Length = 183
Score = 65.9 bits (159), Expect = 1e-09
Identities = 38/125 (30%), Positives = 69/125 (55%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ T ++RAE+ E Y +ID+V + ++L+K K + D + K ++
Sbjct: 48 QKIEVTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKS---IR 104
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F + + L E E+ D+ +EL+ + R K F + P++ EA+ Q+E++ HDF
Sbjct: 105 FQDAEINLADEQED-------YGDENQELV--IQRRKKFSVKPMSEEEAVLQMELIGHDF 155
Query: 418 YAFRN 432
Y F+N
Sbjct: 156 YMFKN 160
[104][TOP]
>UniRef100_Q18CN1 Putative RNA-binding protein n=1 Tax=Clostridium difficile 630
RepID=Q18CN1_CLOD6
Length = 183
Score = 65.9 bits (159), Expect = 1e-09
Identities = 38/125 (30%), Positives = 69/125 (55%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ T ++RAE+ E Y +ID+V + ++L+K K + D + K ++
Sbjct: 48 QKIEVTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKS---IR 104
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F + + L E E+ D+ +EL+ + R K F + P++ EA+ Q+E++ HDF
Sbjct: 105 FQDAEINLADEQED-------YGDENQELV--IQRRKKFSVKPMSEEEAVLQMELIGHDF 155
Query: 418 YAFRN 432
Y F+N
Sbjct: 156 YMFKN 160
[105][TOP]
>UniRef100_A9W9Y4 Ribosomal subunit interface protein n=2 Tax=Chloroflexus
RepID=A9W9Y4_CHLAA
Length = 197
Score = 65.9 bits (159), Expect = 1e-09
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHM-KGPNRLK 237
R + TL + ++RAEE A Y +ID V ++QR++ + KDK R + PN L
Sbjct: 54 RVQTTLVAEHGVILRAEERAPDLYAAIDEVQEVLQRQIARYKDKYWRRSREQRRAPNGLT 113
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
+E + + E TP + E V+RTK F + P+ V +AI+Q+E++ H+F
Sbjct: 114 PAEEV---AIAEAEAAALATPTEVGSE---ARVIRTKTFRLRPMFVDDAIEQMELLGHNF 167
Query: 418 YAFRNEE 438
+ F++ E
Sbjct: 168 FVFQDAE 174
[106][TOP]
>UniRef100_Q5KV92 Ribosomal protein S30EA n=1 Tax=Geobacillus kaustophilus
RepID=Q5KV92_GEOKA
Length = 183
Score = 65.5 bits (158), Expect = 2e-09
Identities = 45/126 (35%), Positives = 72/126 (57%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVT+ H ++RAEE E Y +IDLV+ ++R++RK K K + K +R K
Sbjct: 52 KIEVTI-PMPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKV-----NRKLRDREKE 105
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+++ P+PS E ++EEE E+VRTK+F + P+ EAI Q+ ++ H+F+
Sbjct: 106 AKLAAPVPSGASAAE-------NNEEEF--EIVRTKHFSLKPMDSEEAILQMNLLGHNFF 156
Query: 421 AFRNEE 438
F N E
Sbjct: 157 IFTNAE 162
[107][TOP]
>UniRef100_A7NNI5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Roseiflexus castenholzii DSM 13941
RepID=A7NNI5_ROSCS
Length = 198
Score = 65.5 bits (158), Expect = 2e-09
Identities = 40/126 (31%), Positives = 65/126 (51%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
R +VT+ +VRAE A Y +ID V +QR++ + KDK GR R +
Sbjct: 59 RVQVTVVGDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKHWRRGRL-----RRQG 113
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+++ LP + P DEEE +VRTK F + P+ EA++Q+E++ H F+
Sbjct: 114 GQIVEALPEMNAA-----APAPIDEEEQRPRIVRTKEFQVKPMYSDEAVEQMELLGHSFF 168
Query: 421 AFRNEE 438
F++ +
Sbjct: 169 IFQDAD 174
[108][TOP]
>UniRef100_C2KX79 Ribosome-associated inhibitor A n=1 Tax=Oribacterium sinus F0268
RepID=C2KX79_9FIRM
Length = 176
Score = 65.5 bits (158), Expect = 2e-09
Identities = 43/125 (34%), Positives = 68/125 (54%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K V+RAEE Y SIDLV +++R++RK K+K RH
Sbjct: 48 QKIEVTIPVKG-SVIRAEEATPDMYQSIDLVVDVLERQIRKYKNKLIQ--RHQAA----- 99
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
S+ + IE P +D+EE ++VRTK+ D+ P+T EA Q+E++ H F
Sbjct: 100 ---------SDFSSEFIEEKPAQDEEEI---KIVRTKHIDLKPMTAEEACLQMELLGHSF 147
Query: 418 YAFRN 432
+ F++
Sbjct: 148 FVFQD 152
[109][TOP]
>UniRef100_B0NJJ3 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC
35704 RepID=B0NJJ3_EUBSP
Length = 179
Score = 65.5 bits (158), Expect = 2e-09
Identities = 41/127 (32%), Positives = 69/127 (54%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K G++R+E+ + Y SIDLV +I+R+LRK K+K RH +G K
Sbjct: 48 QKIEVTIPVKG-GIIRSEQESSDMYVSIDLVEEVIERQLRKYKNKLI--ARHQEGSGNFK 104
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
++ + + +D+ E+ ++VRTK F P+ +A Q+E++ HDF
Sbjct: 105 -------------QEFFDSGERSEDDGEI--KIVRTKKFGFKPMYPEDACVQMELLGHDF 149
Query: 418 YAFRNEE 438
+ F N E
Sbjct: 150 FVFCNAE 156
[110][TOP]
>UniRef100_C9XIR4 Putative RNA-binding protein n=3 Tax=Clostridium difficile
RepID=C9XIR4_CLODI
Length = 183
Score = 65.1 bits (157), Expect = 2e-09
Identities = 38/125 (30%), Positives = 69/125 (55%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ T ++RAE+ E Y +ID+V + ++L+K K + D + K ++
Sbjct: 48 QKIEVTIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKS---IR 104
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F + + L E E+ D+ +EL+ + R K F + P++ EA+ Q+E++ HDF
Sbjct: 105 FQDSEINLADEQED-------YGDENQELV--IQRRKKFSVKPMSEEEAVLQMELIGHDF 155
Query: 418 YAFRN 432
Y F+N
Sbjct: 156 YMFKN 160
[111][TOP]
>UniRef100_C8P6S3 Ribosomal subunit interface protein n=1 Tax=Lactobacillus antri DSM
16041 RepID=C8P6S3_9LACO
Length = 179
Score = 65.1 bits (157), Expect = 2e-09
Identities = 43/129 (33%), Positives = 70/129 (54%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
RT + EVT+ + +RAEE + YGS+DLV+ ++R++RK K K R KG
Sbjct: 50 RTYKVEVTIPLP-YLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
L+F +PS+D+ E+ ++VRTK + P+ EA+ Q++M+ H
Sbjct: 108 LEF------VPSDDDAASDEL------------KIVRTKQVSLKPMDPEEAVLQMDMLGH 149
Query: 412 DFYAFRNEE 438
DF+ F++ E
Sbjct: 150 DFFVFQDAE 158
[112][TOP]
>UniRef100_C7ML59 Ribosomal subunit interface protein n=1 Tax=Cryptobacterium curtum
DSM 15641 RepID=C7ML59_CRYCD
Length = 188
Score = 65.1 bits (157), Expect = 2e-09
Identities = 40/125 (32%), Positives = 64/125 (51%)
Frame = +1
Query: 64 CEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFS 243
CEVT+ K H ++R EEH E Y +ID+ ++ + R+LRK K + + +
Sbjct: 56 CEVTMTAKGH-IIRVEEHEEDMYAAIDVAAAKVLRQLRKFKTRVVERNTRTDAASIRSAK 114
Query: 244 EVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYA 423
L L + EE DDE VVR K D+ PLT EA+ +++++ HDF+A
Sbjct: 115 SAKLDLDALMEE-------LSDDE------VVREKSIDLQPLTEEEALVEIDLLGHDFFA 161
Query: 424 FRNEE 438
+ + +
Sbjct: 162 YTDRD 166
[113][TOP]
>UniRef100_C2LVK8 Ribosomal subunit interface protein n=1 Tax=Staphylococcus hominis
SK119 RepID=C2LVK8_STAHO
Length = 191
Score = 65.1 bits (157), Expect = 2e-09
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVT+ K + +RAEE + Y IDLV+S ++R++RK K + R P
Sbjct: 53 KIEVTIPLK-NVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKNRDNGEPE---- 107
Query: 241 SEVILPLPSEDE---EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
P +E + +++E T + +E E+ E++R+K F + P+ EA+ Q++++ H
Sbjct: 108 -----PFIAEQQTVVNEDVEATSESSNENEI--EIIRSKQFSLKPMDSEEAVLQMDLLGH 160
Query: 412 DFYAFRNEE 438
DFY F + E
Sbjct: 161 DFYIFTDRE 169
[114][TOP]
>UniRef100_Q4L4H7 Uncharacterized protein SH2139 n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Y2139_STAHJ
Length = 192
Score = 65.1 bits (157), Expect = 2e-09
Identities = 43/128 (33%), Positives = 69/128 (53%)
Frame = +1
Query: 55 TRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
T + EVT+ K + +RAEE + Y IDLV+S ++R++RK K + + +H
Sbjct: 51 TTKIEVTIPLK-NVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRV--NRKHKTHGEPE 107
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F + P E+ +D + P D E E+I R+K F + P+ EA+ Q+E++ HD
Sbjct: 108 AFVAEVQEAPPENVDD-VNAEPTNDSEIEII----RSKQFSLKPMDSEEAVLQMELLGHD 162
Query: 415 FYAFRNEE 438
FY F + E
Sbjct: 163 FYIFTDRE 170
[115][TOP]
>UniRef100_C4ZI34 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Eubacterium rectale
ATCC 33656 RepID=C4ZI34_EUBR3
Length = 175
Score = 64.7 bits (156), Expect = 3e-09
Identities = 44/127 (34%), Positives = 69/127 (54%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K H V+R+E+ + Y SIDLV +I+R+LRK + K + K
Sbjct: 48 QKIEVTIPAKGH-VIRSEQVSNDMYVSIDLVEEVIERQLRKYRTKISAK----------K 96
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
++ I ++D +E DD E+ ++VRTK F M P+ +A Q+E+ HDF
Sbjct: 97 YAPAIF------QDDFVEA----DDAEDEEIKIVRTKRFGMKPMYPEDACIQMELSGHDF 146
Query: 418 YAFRNEE 438
+ FRN E
Sbjct: 147 FVFRNAE 153
[116][TOP]
>UniRef100_D0BMS6 Ribosomal subunit interface protein n=1 Tax=Granulicatella elegans
ATCC 700633 RepID=D0BMS6_9LACT
Length = 182
Score = 64.7 bits (156), Expect = 3e-09
Identities = 44/129 (34%), Positives = 70/129 (54%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + V+RAEE + YGSIDLV ++R++RK K K R KG
Sbjct: 50 KTAKVEVTIPLP-YLVLRAEETSGDLYGSIDLVIDKLERQVRKYKTKINRKSRE-KG--- 104
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
F + P + P+ DE+E + E+VRTK D+ P+ EA+ Q+ M+ H
Sbjct: 105 --FDIPVAP-----------VVPEPVDEDESVLEIVRTKRVDLKPMDSEEAVLQMNMLGH 151
Query: 412 DFYAFRNEE 438
+F+ +++ E
Sbjct: 152 NFFIYQDAE 160
[117][TOP]
>UniRef100_C8NLT0 S30AE family protein n=2 Tax=Corynebacterium efficiens
RepID=C8NLT0_COREF
Length = 234
Score = 64.3 bits (155), Expect = 4e-09
Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG 222
R + R ++T K H + RAE ++ Y +++ + ++R LRK+K + + +
Sbjct: 72 RADESNRIQITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRSISRSGHRA 130
Query: 223 PNRLKFSEVILPLPSEDEE-------DEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVF 378
P L EV L +E +E + ++ P D ++++ ++VRTK P++V
Sbjct: 131 P--LSTGEVGAQLVAESQEARGADDLGKYDVDPYADKVDDVVPGQIVRTKEHPATPMSVD 188
Query: 379 EAIDQLEMVDHDFYAFRNEE 438
+A+ ++E+V HDFY F NEE
Sbjct: 189 DALSEMELVGHDFYLFINEE 208
[118][TOP]
>UniRef100_C0FKQ0 Putative uncharacterized protein n=1 Tax=Clostridium sp. M62/1
RepID=C0FKQ0_9CLOT
Length = 175
Score = 64.3 bits (155), Expect = 4e-09
Identities = 47/127 (37%), Positives = 66/127 (51%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K H ++RAEE + Y SIDLV II+R+L+K K K D K +
Sbjct: 48 QKIEVTIPVKGH-IIRAEEQSTDMYVSIDLVEEIIERQLKKYKRKLID-----KKQAPVD 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
FSE+ + SE +DEI+I + K F M P+ EA Q+E++ H F
Sbjct: 102 FSELFVQEESE-PDDEIKIE--------------KVKKFAMKPMDPEEACVQMELLGHSF 146
Query: 418 YAFRNEE 438
Y F N E
Sbjct: 147 YVFLNAE 153
[119][TOP]
>UniRef100_B0G387 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G387_9FIRM
Length = 177
Score = 64.3 bits (155), Expect = 4e-09
Identities = 41/127 (32%), Positives = 71/127 (55%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + ++R+E+ ++ Y SIDLV +I+R+LRK K+K ++ +G N
Sbjct: 48 QKIEVTIPVKGN-IIRSEQESDDMYVSIDLVEEVIERQLRKYKNKLV--AKNQEGNN--- 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
FS+ + E+DE++I VRTK F + P+ +A Q+E++ H+F
Sbjct: 102 FSKTLFETEESIEDDEVKI--------------VRTKRFGIKPMYPEDACVQMELLGHNF 147
Query: 418 YAFRNEE 438
+ F N E
Sbjct: 148 FVFFNAE 154
[120][TOP]
>UniRef100_A8S366 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8S366_9CLOT
Length = 187
Score = 64.3 bits (155), Expect = 4e-09
Identities = 45/127 (35%), Positives = 70/127 (55%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + +RAEE + Y SIDLV II+R++R+ + K D K +
Sbjct: 59 QKIEVTIPVKGN-TIRAEESSTDMYVSIDLVEEIIERQIRRYRKKLID-----KKQAAIS 112
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
FS+ + +EEDE++ DDE + +V+TK F + P EA Q+EM+ H+F
Sbjct: 113 FSQAFI-----EEEDEVQ-----DDEIQ----IVKTKKFAIKPTIPEEACLQMEMLGHNF 158
Query: 418 YAFRNEE 438
Y F N +
Sbjct: 159 YVFLNAD 165
[121][TOP]
>UniRef100_Q1AVJ5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVJ5_RUBXD
Length = 189
Score = 63.9 bits (154), Expect = 5e-09
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETD--HGRHMKGPNRLKF 240
E TL+ V++A E +E Y SID +S ++R++++ + ++ D HGR LK
Sbjct: 59 ETTLFING-AVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDRWHGR-------LK- 109
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
E E P +EEE IE +VRTK F M P++ EA+ Q+E++DHDF
Sbjct: 110 ---------NHEGARAEPQPFVAEEEEDIEPRIVRTKQFQMKPMSAEEAVLQMELLDHDF 160
Query: 418 YAFRNEE 438
+ F N +
Sbjct: 161 FVFTNAD 167
[122][TOP]
>UniRef100_C8NDQ1 Ribosomal subunit interface protein n=1 Tax=Granulicatella adiacens
ATCC 49175 RepID=C8NDQ1_9LACT
Length = 186
Score = 63.9 bits (154), Expect = 5e-09
Identities = 43/129 (33%), Positives = 71/129 (55%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + V+RAEE + YGSIDLV ++R++RK K K + +R
Sbjct: 56 KTAKVEVTIPLP-YLVLRAEETSIDLYGSIDLVVDKLERQVRKHKTK-------INRKSR 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
K +++LP P+ +EEE E+VRTK D+ P+ EA+ Q+ M+ H
Sbjct: 108 EKGFDIVLPT-----------LPEAPEEEETGLEIVRTKRIDLKPMDSEEAVLQMNMLGH 156
Query: 412 DFYAFRNEE 438
+F+ +++ E
Sbjct: 157 NFFIYQDAE 165
[123][TOP]
>UniRef100_A5VIF9 Sigma 54 modulation protein / SSU ribosomal protein S30P n=6
Tax=Lactobacillus reuteri RepID=A5VIF9_LACRD
Length = 182
Score = 63.9 bits (154), Expect = 5e-09
Identities = 45/129 (34%), Positives = 73/129 (56%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
RT + EVT+ + +RAEE + YGSIDLV+ ++R++RK K K R KG
Sbjct: 50 RTYKVEVTIPLP-YLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
L+F +PS+++ T +DDE ++VRTK + P+ EA+ Q++M+ H
Sbjct: 108 LEF------IPSDNDG-----TDGQDDE----LKIVRTKQVSLKPMDPEEAVLQMDMLGH 152
Query: 412 DFYAFRNEE 438
+F+ F++ E
Sbjct: 153 NFFIFQDAE 161
[124][TOP]
>UniRef100_C0CVD1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
DSM 15981 RepID=C0CVD1_9CLOT
Length = 176
Score = 63.9 bits (154), Expect = 5e-09
Identities = 42/127 (33%), Positives = 66/127 (51%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + +RAEE + Y SIDLV +I+R++R+ + K D K L
Sbjct: 48 QKIEVTIPVKGN-TIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLID-----KKQAALS 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
FS+ + +++ED+I I V+TK F + P EA Q+EM+ H+F
Sbjct: 102 FSQAFIDEEEDEQEDDIRI--------------VKTKKFAIKPTIPEEACLQMEMLGHNF 147
Query: 418 YAFRNEE 438
Y F N +
Sbjct: 148 YVFLNSD 154
[125][TOP]
>UniRef100_A4L2S0 Ribosome-associated protein Y n=1 Tax=Lactobacillus reuteri
RepID=A4L2S0_LACRE
Length = 182
Score = 63.9 bits (154), Expect = 5e-09
Identities = 45/129 (34%), Positives = 73/129 (56%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
RT + EVT+ + +RAEE + YGSIDLV+ ++R++RK K K R KG
Sbjct: 50 RTYKVEVTIPLP-YLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
L+F +PS+++ T +DDE ++VRTK + P+ EA+ Q++M+ H
Sbjct: 108 LEF------IPSDNDG-----TDGQDDE----LKIVRTKQVSLKPMDPEEAVLQMDMLGH 152
Query: 412 DFYAFRNEE 438
+F+ F++ E
Sbjct: 153 NFFIFQDAE 161
[126][TOP]
>UniRef100_Q1WSW6 Ribosome-associated factor Y n=1 Tax=Lactobacillus salivarius
UCC118 RepID=Q1WSW6_LACS1
Length = 184
Score = 63.5 bits (153), Expect = 7e-09
Identities = 43/129 (33%), Positives = 70/129 (54%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + V+RAEE + Y SIDLV+ ++R++RK K K R KG
Sbjct: 50 KTAKVEVTIPLP-YLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGFKN 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+F+ P DE++E+E + E+VRTK + P+ EA+ Q++M+ H
Sbjct: 108 FEFA------PVADEKEEVE---------DKKFEIVRTKRLSLKPMDSEEAVLQMDMLGH 152
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 153 DFFIYEDAE 161
[127][TOP]
>UniRef100_C6D4V5 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Paenibacillus sp. JDR-2 RepID=C6D4V5_PAESJ
Length = 182
Score = 63.5 bits (153), Expect = 7e-09
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVI--LPLPSE 270
++RAE+ +E Y SID+V ++R++RK K K RH G L F E + +
Sbjct: 61 MLRAEDKSEDMYSSIDVVVDKLERQIRKHKTKMNRKFRHESGVKAL-FKEGLSQTAVSVM 119
Query: 271 DEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRN 432
DEEDE+E+ VRTK F + P+ V EAI Q+ MV H+F+ F N
Sbjct: 120 DEEDELEL--------------VRTKRFMLKPMDVEEAILQMNMVGHNFFVFSN 159
[128][TOP]
>UniRef100_Q8NSB7 Ribosome-associated protein Y (PSrp-1) n=2 Tax=Corynebacterium
glutamicum RepID=Q8NSB7_CORGL
Length = 221
Score = 63.5 bits (153), Expect = 7e-09
Identities = 43/140 (30%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG 222
R + R ++T K H + RAE ++ Y +++ + ++R LRK+K + + +
Sbjct: 62 RADESDRIQITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRSISRSGHRA 120
Query: 223 PNRLKFSEVILPLPSEDEE----DEI---EITPQKDDEEELIE-EVVRTKYFDMPPLTVF 378
P L EV L +E +E DE+ ++ P D ++++ +VVRTK P++V
Sbjct: 121 P--LGTGEVGAQLVAESQEARGADELGKYDVDPYADKVDDVMPGQVVRTKEHPATPMSVD 178
Query: 379 EAIDQLEMVDHDFYAFRNEE 438
+A+ ++E+V HDFY F NEE
Sbjct: 179 DALSEMELVGHDFYLFVNEE 198
[129][TOP]
>UniRef100_C5EVT1 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EVT1_9FIRM
Length = 187
Score = 63.5 bits (153), Expect = 7e-09
Identities = 44/127 (34%), Positives = 69/127 (54%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + +RAEE + Y SIDLV +I+R++R+ + K D K +
Sbjct: 59 QKIEVTIPVKGN-TIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLID-----KKQAAIS 112
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
FS+ + +EEDE++ DDE + +V+TK F + P EA Q+EM+ H F
Sbjct: 113 FSQAFI-----EEEDEVQ-----DDEIQ----IVKTKKFAIKPTIPEEACLQMEMLGHSF 158
Query: 418 YAFRNEE 438
Y F N +
Sbjct: 159 YVFLNAD 165
[130][TOP]
>UniRef100_C2ETD9 Ribosome-associated inhibitor protein Y n=1 Tax=Lactobacillus
vaginalis ATCC 49540 RepID=C2ETD9_9LACO
Length = 189
Score = 63.5 bits (153), Expect = 7e-09
Identities = 42/129 (32%), Positives = 73/129 (56%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
RT + EVT+ + +RAEE + YGS+DLV+ ++R++RK K K R KG
Sbjct: 59 RTYKVEVTIPLP-YLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGFKS 116
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
L+F +P++D+ + +++L ++VRTK + P+ EA+ Q++M+ H
Sbjct: 117 LEF------VPTDDDAES---------QDDL--KIVRTKQISLKPMDPEEAVLQMDMLGH 159
Query: 412 DFYAFRNEE 438
DF+ F++ E
Sbjct: 160 DFFVFQDAE 168
[131][TOP]
>UniRef100_C2EGB2 Ribosome-associated inhibitor protein Y n=1 Tax=Lactobacillus
salivarius ATCC 11741 RepID=C2EGB2_9LACO
Length = 184
Score = 63.5 bits (153), Expect = 7e-09
Identities = 43/129 (33%), Positives = 70/129 (54%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + V+RAEE + Y SIDLV+ ++R++RK K K R KG
Sbjct: 50 KTAKVEVTIPLP-YLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGFKN 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+F+ P DE++E+E + E+VRTK + P+ EA+ Q++M+ H
Sbjct: 108 FEFA------PVADEKEEVE---------DKKFEIVRTKRLSLKPMDSEEAVLQMDMLGH 152
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 153 DFFIYEDAE 161
[132][TOP]
>UniRef100_Q6NIR9 Putative uncharacterized protein n=1 Tax=Corynebacterium
diphtheriae RepID=Q6NIR9_CORDI
Length = 222
Score = 63.2 bits (152), Expect = 9e-09
Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG 222
R ++ R ++T K H + RAE ++ Y +++ + ++R LRK+K + + +
Sbjct: 65 RSEQSDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRA 123
Query: 223 PNRLKFSEVILPLPSEDE----EDEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVFEAI 387
P L E L E E E++ + P D E++I ++VRTK P++V +A+
Sbjct: 124 P--LGTGEAAAELVKEAEVAREENKYDHDPYADKVEDVIPGQIVRTKEHPSTPMSVDDAL 181
Query: 388 DQLEMVDHDFYAFRNEE 438
++E+V HDFY F NEE
Sbjct: 182 SEMELVGHDFYLFVNEE 198
[133][TOP]
>UniRef100_C2CQV7 Ribosome-associated inhibitor protein Y n=1 Tax=Corynebacterium
striatum ATCC 6940 RepID=C2CQV7_CORST
Length = 215
Score = 63.2 bits (152), Expect = 9e-09
Identities = 41/136 (30%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETD---HGRH 213
R + R ++T K H + RAE ++ Y +++ + ++R LRK+K + + R
Sbjct: 55 REAESDRIQITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKVRRENVKSGHRA 113
Query: 214 MKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVFEAID 390
KG L +E++ +E ++E I P + E++ ++VR+K P++V EA+
Sbjct: 114 QKGTGELA-AEMVAAAENERAKEERYIDPYAETVEDVRPGQIVRSKEHPATPMSVDEALS 172
Query: 391 QLEMVDHDFYAFRNEE 438
++E+V HDFY F NEE
Sbjct: 173 EMELVGHDFYLFINEE 188
[134][TOP]
>UniRef100_Q49VV1 Uncharacterized protein SSP1964 n=1 Tax=Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305
RepID=Y1964_STAS1
Length = 190
Score = 63.2 bits (152), Expect = 9e-09
Identities = 40/126 (31%), Positives = 68/126 (53%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVT+ K+ +RAEE + Y IDL+++ ++R++RK K + R+ +G
Sbjct: 53 KIEVTIPLKKV-TLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRN-RGEQ---- 106
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
E LP E E EI+ + D E E++R K F + P+ EA+ Q++++ HDF+
Sbjct: 107 -EAFASLPEEKEAVEIQNDENEADNEI---EIIRAKNFSLKPMDSEEAVLQMDLLGHDFF 162
Query: 421 AFRNEE 438
F + E
Sbjct: 163 IFTDRE 168
[135][TOP]
>UniRef100_UPI0001874332 S30AE family protein n=1 Tax=Corynebacterium amycolatum SK46
RepID=UPI0001874332
Length = 219
Score = 62.8 bits (151), Expect = 1e-08
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 6/137 (4%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG 222
R R+ R ++T K H + RAE ++ Y +++ ++R LRK+K + +
Sbjct: 63 RADRSDRIQITATGKGH-LARAEAKEDSFYAALESALGKMERSLRKVKARRKISRSGHRA 121
Query: 223 PNRLKFSEVILPLPSEDEEDEIEITPQKDDE-EELIEEV-----VRTKYFDMPPLTVFEA 384
P + E L +E E P+K D E+L+E+V VRTK P+TV +A
Sbjct: 122 P--MSVGEATASLVAEAEA----AAPEKADPYEDLVEDVTPGQVVRTKQHSATPMTVEDA 175
Query: 385 IDQLEMVDHDFYAFRNE 435
+ ++E+V HDFY F NE
Sbjct: 176 LSEMELVGHDFYLFVNE 192
[136][TOP]
>UniRef100_Q8XIE9 30S ribosomal protein S30AE family n=1 Tax=Clostridium perfringens
RepID=Q8XIE9_CLOPE
Length = 179
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/114 (32%), Positives = 63/114 (55%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++R EE + Y SIDLV I+R++RK K + + R+ + L+F+
Sbjct: 60 LLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY----DSLRFAH---------- 105
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
I P +D +EE ++V+TK FD+ P+ EA+ Q+E++ HDF+ F++ E
Sbjct: 106 -----IDPIEDMKEEKEAKIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPE 154
[137][TOP]
>UniRef100_Q0SR10 Ribosomal subunit interface protein n=1 Tax=Clostridium perfringens
SM101 RepID=Q0SR10_CLOPS
Length = 179
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/114 (32%), Positives = 63/114 (55%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++R EE + Y SIDLV I+R++RK K + + R+ + L+F+
Sbjct: 60 LLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY----DSLRFAH---------- 105
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
I P +D +EE ++V+TK FD+ P+ EA+ Q+E++ HDF+ F++ E
Sbjct: 106 -----IDPIEDMKEEKEAKIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPE 154
[138][TOP]
>UniRef100_A7GUW3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GUW3_BACCN
Length = 179
Score = 62.8 bits (151), Expect = 1e-08
Identities = 48/128 (37%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETHSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSAKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F LP + ++E++ E+EL E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 AFI-----LPDQLGQEEVQ-------EDEL--ELVRTKRFDLKPMDVEEAILQMDMLGHN 150
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 151 FFVFTNAD 158
[139][TOP]
>UniRef100_C2BJI0 Ribosome-associated inhibitor protein Y n=2 Tax=Corynebacterium
RepID=C2BJI0_9CORY
Length = 214
Score = 62.8 bits (151), Expect = 1e-08
Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIK-DKETDHGRH-- 213
R R ++T K H + RAE ++ Y +++ ++R LRK+K +E G H
Sbjct: 55 RDSEAERLQITATGKGH-IARAEAKEDSFYAALETALGKMERSLRKVKVRRENVKGGHRA 113
Query: 214 MKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVFEAID 390
KG + +E++ +E ++E + P + E++ ++VRTK P++V +A+
Sbjct: 114 QKGTGEIA-AEMVAQAEAERAKEERYVDPYAETVEDVRPGQIVRTKEHPATPMSVDDALS 172
Query: 391 QLEMVDHDFYAFRNEE 438
++E+V HDF+ F NEE
Sbjct: 173 EMELVGHDFFLFVNEE 188
[140][TOP]
>UniRef100_B2GAI6 Ribosomal subunit interface protein n=3 Tax=Lactobacillus fermentum
RepID=B2GAI6_LACF3
Length = 181
Score = 62.8 bits (151), Expect = 1e-08
Identities = 42/129 (32%), Positives = 69/129 (53%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
RT + EVT+ + +RAEE + YGS+DLV+ ++R++RK K K R KG
Sbjct: 50 RTYKVEVTIPLP-YLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGYKN 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
L+F + PSE+ E + ++VRTK + P+ EA+ Q++M+ H
Sbjct: 108 LEFVDT----PSEEVEASDSL------------KIVRTKQIPLKPMDSEEAVLQMDMLGH 151
Query: 412 DFYAFRNEE 438
DF+ +++ E
Sbjct: 152 DFFVYQDAE 160
[141][TOP]
>UniRef100_B9CNR8 Light-repressed protein n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNR8_9ACTN
Length = 195
Score = 62.8 bits (151), Expect = 1e-08
Identities = 41/122 (33%), Positives = 65/122 (53%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSE 246
EVT++ R+ VVR + YG+ID + + R+LRK K + D H + S+
Sbjct: 58 EVTVFV-RNSVVRVVSSGDDMYGAIDEAAEKVTRQLRKYKTRIVDKHHHAQNTRGRALSQ 116
Query: 247 VILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAF 426
E+ + IE TP +D +++L+ E KY D+ P+T EA+ Q +++ HDFY F
Sbjct: 117 -------EELANLIE-TPAEDLDDQLVRE----KYIDLLPMTEEEALVQTDLLGHDFYVF 164
Query: 427 RN 432
N
Sbjct: 165 VN 166
[142][TOP]
>UniRef100_Q0TND9 Ribosomal subunit interface protein n=6 Tax=Clostridium perfringens
RepID=Q0TND9_CLOP1
Length = 179
Score = 62.8 bits (151), Expect = 1e-08
Identities = 37/114 (32%), Positives = 63/114 (55%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++R EE + Y SIDLV I+R++RK K + + R+ + L+F+
Sbjct: 60 LLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY----DSLRFAH---------- 105
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
I P +D +EE ++V+TK FD+ P+ EA+ Q+E++ HDF+ F++ E
Sbjct: 106 -----IDPIEDMKEEKEAKIVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPE 154
[143][TOP]
>UniRef100_A8U6N5 Ribosomal subunit interface protein n=1 Tax=Carnobacterium sp. AT7
RepID=A8U6N5_9LACT
Length = 180
Score = 62.8 bits (151), Expect = 1e-08
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + V+RAEE + YGS+DLVS ++R++RK K K R
Sbjct: 50 KTAKVEVTIPLP-YLVLRAEETSPDLYGSVDLVSDKLERQMRKYKTKIN---------RR 99
Query: 232 LKFSEVILP--LPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMV 405
+ S V++P LP E++E E+E+ +VRTK + P+ EA+ Q++M+
Sbjct: 100 TRGSNVVVPPVLPGEEQESH---------EDEV--NIVRTKRLSLKPMDSEEAVLQMDML 148
Query: 406 DHDFYAFRNEE 438
H+F+ F + +
Sbjct: 149 GHNFFIFEDAD 159
[144][TOP]
>UniRef100_A7BEC8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus
ATCC 17982 RepID=A7BEC8_9ACTO
Length = 214
Score = 62.8 bits (151), Expect = 1e-08
Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 18/150 (12%)
Frame = +1
Query: 43 RGPR----TRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGR 210
R PR R E+T+Y K ++RAE + Y ++D+ + + +LR+++D+ DH R
Sbjct: 45 RNPRQADTAERIELTVYGKGP-IIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRR 103
Query: 211 HMKGPNRLKFSEVI--------------LPLPSEDEEDEIEITPQKDDEEELIEEVVRTK 348
P L +E++ P P ED +++ ++++ +VR K
Sbjct: 104 RY--PRDLAEAEILEAPVVEETATFEPEAPKPLRSAED-LKVGEAREEQWGDTPIIVRQK 160
Query: 349 YFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ PP++V EA+DQ+ MV H F+ F +++
Sbjct: 161 VHEAPPMSVDEALDQMMMVGHPFFLFVDKD 190
[145][TOP]
>UniRef100_UPI00017F5ACC putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
ATCC 43255 RepID=UPI00017F5ACC
Length = 185
Score = 62.4 bits (150), Expect = 2e-08
Identities = 40/127 (31%), Positives = 69/127 (54%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ ++RAE+ + Y +ID+V + R++ K K K D ++ K ++
Sbjct: 48 QKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS---IR 104
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F L D E + ++DE +IE R K F++ P++ EAI Q+E+V H+F
Sbjct: 105 FEN----LDFIDNSSEFDDYDDEEDENIVIE---RRKKFNVKPMSSEEAILQMELVGHNF 157
Query: 418 YAFRNEE 438
Y FRN++
Sbjct: 158 YMFRNQD 164
[146][TOP]
>UniRef100_C0Z6T8 Putative uncharacterized protein yvyD n=1 Tax=Brevibacillus brevis
NBRC 100599 RepID=C0Z6T8_BREBN
Length = 185
Score = 62.4 bits (150), Expect = 2e-08
Identities = 36/114 (31%), Positives = 62/114 (54%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++RAEE E Y +IDLV ++R++RK K K R + R+ ++ E
Sbjct: 62 IIRAEETHEDMYAAIDLVVEKLERQIRKHKTKLMRKLR-VDSTGRI----------AQRE 110
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ + DEE++ ++VRTK FD+ P+ EA+ Q++M+ H F+ F+N +
Sbjct: 111 SQPVAVMIPDVDEEDIDIDIVRTKRFDLKPMDAQEAVMQMDMLGHSFFVFQNSD 164
[147][TOP]
>UniRef100_C9XLM7 Putative sigma 54 modulation protein n=3 Tax=Clostridium difficile
RepID=C9XLM7_CLODI
Length = 187
Score = 62.4 bits (150), Expect = 2e-08
Identities = 39/127 (30%), Positives = 71/127 (55%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ ++RAE+ + Y +ID+V + R++ K K K D ++ K ++
Sbjct: 48 QKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS---IR 104
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F + + + E D+ + DDEE+ + R K F++ P++ EAI Q+E+V H+F
Sbjct: 105 FENLDF-IDNSSEFDDYDY----DDEEDENIVIERRKKFNVKPMSSEEAILQMELVGHNF 159
Query: 418 YAFRNEE 438
Y FRN++
Sbjct: 160 YMFRNQD 166
[148][TOP]
>UniRef100_B7IPV2 Ribosomal subunit interface protein n=5 Tax=Bacillus cereus group
RepID=B7IPV2_BACC2
Length = 180
Score = 62.4 bits (150), Expect = 2e-08
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSMKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D+ EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVMDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[149][TOP]
>UniRef100_C0BYR7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
15053 RepID=C0BYR7_9CLOT
Length = 178
Score = 62.4 bits (150), Expect = 2e-08
Identities = 42/127 (33%), Positives = 68/127 (53%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + ++R+E+ + Y SIDLV +I+R+LRK K+K RH +G N
Sbjct: 48 QKIEVTIPVKGN-IIRSEQVSSDMYVSIDLVEEVIERQLRKYKNKLV--ARHQEGGN--- 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
E E E + DDE ++VRTK F + P+ +A Q++++ HDF
Sbjct: 102 ---------FRQEFFESEYATEDDDE----VKIVRTKRFGIKPMYPEDACIQMDLLGHDF 148
Query: 418 YAFRNEE 438
+ F N +
Sbjct: 149 FVFCNAD 155
[150][TOP]
>UniRef100_Q2B1U0 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. NRRL
B-14911 RepID=Q2B1U0_9BACI
Length = 184
Score = 62.0 bits (149), Expect = 2e-08
Identities = 45/126 (35%), Positives = 67/126 (53%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVT+ ++ V+RAEE E Y +IDL+ ++R++RK K K R KG L F
Sbjct: 52 KVEVTI-PMQNLVLRAEEDHEDMYAAIDLIVDKLERQIRKHKTKVNRKFRE-KGSPTLMF 109
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+ DE E ++++ +L EVVR K FD+ P+ EAI Q+ ++ H FY
Sbjct: 110 ASF----------DEPEAPVLEEEDNDL--EVVRQKSFDLKPMDNEEAILQMNLLGHSFY 157
Query: 421 AFRNEE 438
F N E
Sbjct: 158 VFTNAE 163
[151][TOP]
>UniRef100_B5UPY3 Ribosomal subunit interface protein n=6 Tax=Bacillus cereus group
RepID=B5UPY3_BACCE
Length = 180
Score = 62.0 bits (149), Expect = 2e-08
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSMKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D+ EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[152][TOP]
>UniRef100_UPI0001789185 sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789185
Length = 188
Score = 61.6 bits (148), Expect = 3e-08
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK--FSEVILPLPSE 270
V+RAE+ ++ Y SID V ++R++RK K K R +K LK +E S+
Sbjct: 62 VLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLN---RKIKQEGGLKTLIAENGAAATSQ 118
Query: 271 DEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRN 432
+ +++E DE+E EVVRTK F M P+ V EAI Q+ MV H+F+ F N
Sbjct: 119 VDAEQVEY-----DEDEY--EVVRTKRFTMKPMDVEEAILQMNMVGHNFFVFSN 165
[153][TOP]
>UniRef100_UPI00006DCB57 hypothetical protein CdifQ_04002839 n=1 Tax=Clostridium difficile
QCD-32g58 RepID=UPI00006DCB57
Length = 138
Score = 61.6 bits (148), Expect = 3e-08
Identities = 39/124 (31%), Positives = 69/124 (55%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSE 246
EVT+ ++RAE+ + Y +ID+V + R++ K K K D ++ K ++F
Sbjct: 2 EVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS---IRFEN 58
Query: 247 VILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAF 426
+ + + E D+ + DDEE+ + R K F++ P++ EAI Q+E+V H+FY F
Sbjct: 59 LDF-IDNSSEFDDYDY----DDEEDENIVIERRKKFNVKPMSSEEAILQMELVGHNFYMF 113
Query: 427 RNEE 438
RN++
Sbjct: 114 RNQD 117
[154][TOP]
>UniRef100_A9BI17 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Petrotoga mobilis SJ95 RepID=A9BI17_PETMO
Length = 199
Score = 61.6 bits (148), Expect = 3e-08
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK-----ETDHGRHMKGPNRLKFSEVILPL 261
+++ EE + Y +ID V+ ++RK+RK+K++ TD M+ L+ ++
Sbjct: 66 IIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQEQSRTDKKARMEIEQNLQNPDIKNLD 125
Query: 262 PSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+E+ E EIE P ++VRTK FD+ ++V EA+ Q++++ H F+ FRN +
Sbjct: 126 LAEENESEIEEKPDAP-------KIVRTKNFDLTLMSVEEAMLQMQLLGHSFFVFRNPD 177
[155][TOP]
>UniRef100_C2U573 Ribosome-associated factor Y n=3 Tax=Bacillus cereus
RepID=C2U573_BACCE
Length = 180
Score = 61.6 bits (148), Expect = 3e-08
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSVKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D+ EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[156][TOP]
>UniRef100_B7HEI9 Ribosomal subunit interface protein n=9 Tax=Bacillus cereus group
RepID=B7HEI9_BACC4
Length = 180
Score = 61.6 bits (148), Expect = 3e-08
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSIKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D+ EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[157][TOP]
>UniRef100_C2QJQ3 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Bacillus cereus R309803 RepID=C2QJQ3_BACCE
Length = 180
Score = 61.6 bits (148), Expect = 3e-08
Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSVKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D+ EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[158][TOP]
>UniRef100_C5CAR2 Ribosomal subunit interface protein n=1 Tax=Micrococcus luteus NCTC
2665 RepID=C5CAR2_MICLC
Length = 225
Score = 61.2 bits (147), Expect = 3e-08
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
R E+T+ R VVRAE A+ + D ++ + +LR+++D+ D RH K
Sbjct: 57 RVELTVRGPRD-VVRAEAAADDELAAFDKAAARLTERLRRLRDRRKDR-RHRKIGASRGA 114
Query: 241 SEV--ILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
EV + PLP E +D E +R K F P++V +A+D +E+V HD
Sbjct: 115 GEVGFVPPLPPSGAAPAAEDASAQDAPEAGTPVRIRQKAFPATPMSVDDAVDAMELVGHD 174
Query: 415 FYAFRNEE 438
FY F+N E
Sbjct: 175 FYLFQNAE 182
[159][TOP]
>UniRef100_C4Z2Z4 Putative sigma-54 modulation protein n=1 Tax=Eubacterium eligens
ATCC 27750 RepID=C4Z2Z4_EUBE2
Length = 175
Score = 61.2 bits (147), Expect = 3e-08
Identities = 40/127 (31%), Positives = 67/127 (52%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + ++R+E+ + Y SIDLV +I+R+L+K K+K D K N
Sbjct: 48 QKIEVTIPVKGN-IIRSEQVSSDMYVSIDLVEEVIERQLKKYKNKIVD-----KQQNAAA 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F++ + +D+E +I +RTK F + P+ EA Q+E++ H+F
Sbjct: 102 FAQEFVEKDYDDDEVKI----------------IRTKRFGIKPMDPEEACVQMELLGHNF 145
Query: 418 YAFRNEE 438
Y F N E
Sbjct: 146 YVFFNSE 152
[160][TOP]
>UniRef100_B9MLV8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Anaerocellum thermophilum DSM 6725
RepID=B9MLV8_ANATD
Length = 181
Score = 61.2 bits (147), Expect = 3e-08
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Frame = +1
Query: 91 HGVV-RAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPS 267
HG++ RAEE + Y +IDLV ++R++RK K K R K +E + +
Sbjct: 57 HGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIA---------KRAKDAESLRYMTF 107
Query: 268 EDEEDEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
E EE P+K+ +EE E + +TK F + P++V EAI Q+ ++ H+F+ F N++
Sbjct: 108 ELEE------PEKEVQEENSEFRIAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQD 159
[161][TOP]
>UniRef100_Q3DA79 Ribosomal subunit interface protein n=2 Tax=Streptococcus
agalactiae RepID=Q3DA79_STRAG
Length = 184
Score = 61.2 bits (147), Expect = 3e-08
Identities = 43/129 (33%), Positives = 69/129 (53%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ +RAE+ ++ YGSIDLV I+R++RK K K R +
Sbjct: 50 KTAKVEVTILIDSI-TLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYRE-----K 103
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+ S+V E E P DEE + + +VRTK ++ P+ V EA+ Q+E++ H
Sbjct: 104 IPASQVFTT--------EFEAEP---DEEAVSQRIVRTKNVNLKPMDVEEALLQMELLGH 152
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 153 DFFIYTDAE 161
[162][TOP]
>UniRef100_Q3CZ63 Ribosomal subunit interface protein n=6 Tax=Streptococcus
agalactiae RepID=Q3CZ63_STRAG
Length = 184
Score = 61.2 bits (147), Expect = 3e-08
Identities = 43/129 (33%), Positives = 69/129 (53%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ +RAE+ ++ YGSIDLV I+R++RK K K R +
Sbjct: 50 KTAKVEVTILIDSI-TLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYRE-----K 103
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+ S+V E E P DEE + + +VRTK ++ P+ V EA+ Q+E++ H
Sbjct: 104 IPASQVFTT--------EFEAEP---DEEAVSQRIVRTKNVNLKPMDVEEALLQMELLGH 152
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 153 DFFIYTDAE 161
[163][TOP]
>UniRef100_C4FCG3 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis
DSM 13280 RepID=C4FCG3_9ACTN
Length = 194
Score = 61.2 bits (147), Expect = 3e-08
Identities = 41/128 (32%), Positives = 65/128 (50%)
Frame = +1
Query: 49 PRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPN 228
P EVT+ R V+R EH Y +IDL + + R+LRK K + D+ +
Sbjct: 51 PNPAIVEVTVRA-RGSVIRVAEHGADMYAAIDLAAEKVTRQLRKFKTRVVDNRQQ----- 104
Query: 229 RLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVD 408
L +EV P E D ++ +D++++L VR K ++ P+T EA+ Q +++
Sbjct: 105 GLSAAEVA---PVEPVADLADLLLPEDEDDQL----VRVKEVELTPMTDEEALVQTDLIG 157
Query: 409 HDFYAFRN 432
HDFY F N
Sbjct: 158 HDFYVFEN 165
[164][TOP]
>UniRef100_B7HX18 Ribosomal subunit interface protein n=6 Tax=Bacillus cereus group
RepID=B7HX18_BACC7
Length = 180
Score = 61.2 bits (147), Expect = 3e-08
Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV ++R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSMKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D+ EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDEVEEDQLELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[165][TOP]
>UniRef100_B7AN97 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus
ATCC 43243 RepID=B7AN97_9BACE
Length = 179
Score = 61.2 bits (147), Expect = 3e-08
Identities = 39/127 (30%), Positives = 67/127 (52%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K ++R+E+ + Y SIDLV +I+R+L+K K+K D K +
Sbjct: 51 QKIEVTIPVKG-SIIRSEQVSNDMYVSIDLVEEVIERQLKKYKNKLID-----KQQDAAA 104
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F++ + D++ +++I +RTK FD+ P+ EA Q+E++ H F
Sbjct: 105 FAQEYIDKEYVDDDADVKI--------------IRTKRFDVKPMDPEEACVQMELLGHSF 150
Query: 418 YAFRNEE 438
Y F N E
Sbjct: 151 YVFFNSE 157
[166][TOP]
>UniRef100_Q72XS8 Ribosomal subunit interface protein n=5 Tax=Bacillus cereus group
RepID=Q72XS8_BACC1
Length = 180
Score = 61.2 bits (147), Expect = 3e-08
Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV ++R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSMKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D+ EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[167][TOP]
>UniRef100_B3XQU8 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Lactobacillus reuteri 100-23 RepID=B3XQU8_LACRE
Length = 182
Score = 61.2 bits (147), Expect = 3e-08
Identities = 45/129 (34%), Positives = 69/129 (53%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
RT + EVT+ + +RAEE + YGSIDLV+ ++R++RK K K R KG
Sbjct: 50 RTYKVEVTIPLP-YLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
L+F D DE +DDE + +VRTK + P+ EA+ Q++M+ H
Sbjct: 108 LEFIS-----SDNDGADE------QDDELK----IVRTKQVSLKPMDPEEAVLQMDMLGH 152
Query: 412 DFYAFRNEE 438
+F+ F++ E
Sbjct: 153 NFFIFQDAE 161
[168][TOP]
>UniRef100_UPI00017F60C6 putative sigma 54 modulation protein n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F60C6
Length = 185
Score = 60.8 bits (146), Expect = 4e-08
Identities = 40/127 (31%), Positives = 68/127 (53%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ ++RAE+ + Y +ID+V + R++ K K K D ++ K ++
Sbjct: 48 QKVEVTIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS---IR 104
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F V S + +D DDEE + R K F++ P++ EAI Q+E+V H+F
Sbjct: 105 FENVDFIDNSSEFDDY-------DDEEYENIVIERRKKFNVKPMSSEEAILQMELVGHNF 157
Query: 418 YAFRNEE 438
Y FRN++
Sbjct: 158 YMFRNQD 164
[169][TOP]
>UniRef100_Q9CHS8 Putative uncharacterized protein ygdA n=1 Tax=Lactococcus lactis
subsp. lactis RepID=Q9CHS8_LACLA
Length = 185
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/126 (30%), Positives = 64/126 (50%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVTL K + +RAE+ ++ Y SID V ++R++RK K + R+ P F
Sbjct: 53 KVEVTLPAK-NVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV-PTGQAF 110
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+ PL DE E + ++VRTK+ + P+ EA+ Q++M+ HDFY
Sbjct: 111 GDEFAPLEKADEVAEDHV------------DIVRTKHVALKPMDAEEAVLQMDMLGHDFY 158
Query: 421 AFRNEE 438
F + +
Sbjct: 159 VFTDAD 164
[170][TOP]
>UniRef100_Q030Z0 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Lactococcus lactis subsp. cremoris SK11
RepID=Q030Z0_LACLS
Length = 185
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/126 (30%), Positives = 65/126 (51%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVTL K + +RAE+ ++ Y SID V ++R++RK K + R+ P F
Sbjct: 53 KVEVTLPAK-NVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV-PTGQVF 110
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+ PL + DE E + ++VRTK+ + P+ EA+ Q++M+ HDFY
Sbjct: 111 GDEFAPLDTTDEVAEDHV------------DIVRTKHVALKPMDAEEAVLQMDMLGHDFY 158
Query: 421 AFRNEE 438
F + +
Sbjct: 159 VFTDAD 164
[171][TOP]
>UniRef100_B7GL70 Ribosome-associated protein Y (PSrp-1) n=1 Tax=Anoxybacillus
flavithermus WK1 RepID=B7GL70_ANOFW
Length = 182
Score = 60.8 bits (146), Expect = 4e-08
Identities = 41/114 (35%), Positives = 57/114 (50%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
V+RAEE + Y +IDLV ++R++RK K K R K N + + + E E
Sbjct: 63 VLRAEERHDDMYAAIDLVVDKLERQIRKHKTKVNRKMRE-KEANGVTLTATVPVATEEHE 121
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
E+E E VVRTK F + P+ EAI Q+ M+ H+FY F N E
Sbjct: 122 EEEFE--------------VVRTKRFSLKPMDSEEAILQMNMLGHNFYVFINAE 161
[172][TOP]
>UniRef100_A9AY42 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Herpetosiphon aurantiacus ATCC 23779
RepID=A9AY42_HERA2
Length = 186
Score = 60.8 bits (146), Expect = 4e-08
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Frame = +1
Query: 1 VDVRLST-RGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLR 177
V+ R T RG GE T + TL ++RAEE Y +++ V +QR++R
Sbjct: 39 VECRFETLRGSGE------TYTVQATLLADHGIILRAEERDRELYAAVEAVHDNLQRQIR 92
Query: 178 KIKDKETDHGRHMKGPNRLKFSEVIL-PLPSEDEEDEIEITPQKDDEEELIEEVVRTKYF 354
+ K+K + +G R E+I PLP+ E D E+ +++R K
Sbjct: 93 RFKEKH-----YRRGKLRRTAGEIIAAPLPALPE----------DAEQAEERQIIRAKEV 137
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ P+ EAI+Q+E++ H F+ FR+ E
Sbjct: 138 TLRPMFSDEAIEQMELLGHSFFVFRDAE 165
[173][TOP]
>UniRef100_A5UVY5 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Roseiflexus sp. RS-1 RepID=A5UVY5_ROSS1
Length = 193
Score = 60.8 bits (146), Expect = 4e-08
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
R +VT+ +VRAE A Y +ID V +QR++ + KDK H R +G R +
Sbjct: 54 RVQVTVVGDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDK---HWR--RGKLRRQG 108
Query: 241 SEVILPLPSEDEEDEIEITPQKD-DEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
+++ LP E+ D EEE +VRTK F + P+ EA++Q+E++ H+F
Sbjct: 109 GQIVEALP------ELAAPSLADTQEEEERPRIVRTKEFQVKPMYSDEAVEQMELLGHNF 162
Query: 418 YAFRNEE 438
+ F++ +
Sbjct: 163 FIFQDAD 169
[174][TOP]
>UniRef100_A2RIX0 Putative Sigma 54 modulation protein n=2 Tax=Lactococcus lactis
RepID=A2RIX0_LACLM
Length = 185
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/126 (30%), Positives = 65/126 (51%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVTL K + +RAE+ ++ Y SID V ++R++RK K + R+ P F
Sbjct: 53 KVEVTLPAK-NVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV-PTGQVF 110
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+ PL + DE E + ++VRTK+ + P+ EA+ Q++M+ HDFY
Sbjct: 111 GDEFAPLDTTDEVAEDHV------------DIVRTKHVALKPMDAEEAVLQMDMLGHDFY 158
Query: 421 AFRNEE 438
F + +
Sbjct: 159 VFTDAD 164
[175][TOP]
>UniRef100_Q1GB46 Ribosomal protein S30EA n=2 Tax=Lactobacillus delbrueckii
RepID=Q1GB46_LACDA
Length = 185
Score = 60.8 bits (146), Expect = 4e-08
Identities = 38/114 (33%), Positives = 63/114 (55%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
V+RAEE + Y SID VS ++R++RK K + R KG E +P + E
Sbjct: 64 VLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KG-----VEEFFIPEDAPVE 117
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
E+++E P + ++VR K ++ P+ EAI Q++M++HDF+ F++ E
Sbjct: 118 EEKVEKAP--------MFKIVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAE 163
[176][TOP]
>UniRef100_C3AT15 Ribosome-associated factor Y n=3 Tax=Bacillus RepID=C3AT15_BACMY
Length = 180
Score = 60.8 bits (146), Expect = 4e-08
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV ++R++RK K K R P
Sbjct: 48 QRVEVTIPFTDL--LLRAEETHSDMYAAIDLVVDKVERQIRKHKTKVNRKLREKGSPK-- 103
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
+ IL P+ E+ K+DE EL VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 104 --TAFILTEPAATLEEV------KEDELEL----VRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[177][TOP]
>UniRef100_C2LQ50 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=1 Tax=Streptococcus salivarius SK126
RepID=C2LQ50_STRSL
Length = 182
Score = 60.8 bits (146), Expect = 4e-08
Identities = 45/129 (34%), Positives = 69/129 (53%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ T +RAE+ ++ YGSIDLV I+R++RK K K R K P
Sbjct: 50 KTAKVEVTIPTGSV-TLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIARKHRE-KVPTG 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
FS ++ +++E P EVVRTK ++ P+ V EAI Q+E++ H
Sbjct: 108 EVFS-------ADFNNEQVEEAPAV--------EVVRTKNIELKPMDVEEAILQMELLGH 152
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 153 DFFIYTDSE 161
[178][TOP]
>UniRef100_A8SKZ7 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC
33270 RepID=A8SKZ7_9FIRM
Length = 174
Score = 60.8 bits (146), Expect = 4e-08
Identities = 39/122 (31%), Positives = 64/122 (52%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSE 246
E T+Y ++RAEE Y SID+V ++R++RK K K + + ++F +
Sbjct: 51 EATIYLPNSTILRAEESTNDMYTSIDIVLDNLERQIRKNKTKLQ---KKYQALETIRFEK 107
Query: 247 VILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAF 426
+ PL E+EE +I VR K FD+ ++ EAI Q+E+++HDF+ F
Sbjct: 108 IAEPL--EEEESKI----------------VRVKKFDVATMSEEEAILQIELLNHDFFIF 149
Query: 427 RN 432
+N
Sbjct: 150 KN 151
[179][TOP]
>UniRef100_P28368 Uncharacterized protein yvyD n=1 Tax=Bacillus subtilis
RepID=YVYD_BACSU
Length = 189
Score = 60.8 bits (146), Expect = 4e-08
Identities = 37/113 (32%), Positives = 59/113 (52%)
Frame = +1
Query: 100 VRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEE 279
+R+E H E Y +IDL ++ ++R++RK K K R P L + +
Sbjct: 64 LRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFREQGSPKYLLANGL---------G 114
Query: 280 DEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ +I Q D EEE ++VR K F++ P+ EAI Q+ M+ H+F+ F N E
Sbjct: 115 SDTDIAVQDDIEEEESLDIVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNAE 167
[180][TOP]
>UniRef100_Q5M196 Ribosomal subunit interface protein, ribosomal protein S30AE family
n=2 Tax=Streptococcus thermophilus RepID=Q5M196_STRT1
Length = 182
Score = 60.5 bits (145), Expect = 6e-08
Identities = 47/129 (36%), Positives = 68/129 (52%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ T +RAE+ + YGSIDLV I R++RK K K R K P
Sbjct: 50 KTAKVEVTIPTGSV-TLRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIARKYRE-KVPTG 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
FS +E ++E+E P EVVRTK ++ P+ V EAI Q+E++ H
Sbjct: 108 EMFS-------TEFNKEEVEEAPAV--------EVVRTKNIELKPMDVEEAILQMELLGH 152
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 153 DFFIYTDSE 161
[181][TOP]
>UniRef100_C5CEL9 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEL9_KOSOT
Length = 178
Score = 60.5 bits (145), Expect = 6e-08
Identities = 32/112 (28%), Positives = 58/112 (51%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
VVR EE + YG ++ +++ ++R++++ K++ RH +
Sbjct: 62 VVRVEERGDDFYGVVEAIANTLERRIKRYKERA--RMRHRASAKEI-------------- 105
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRN 432
+E P+ DEEE ++ RTK F + P+ + EA+ Q+EM+ H F+ FRN
Sbjct: 106 ---LEAIPEVPDEEERGLQITRTKRFSIKPMKIDEALLQMEMLGHTFFVFRN 154
[182][TOP]
>UniRef100_C5R7Z6 Ribosome-associated inhibitor protein Y n=1 Tax=Weissella
paramesenteroides ATCC 33313 RepID=C5R7Z6_WEIPA
Length = 238
Score = 60.5 bits (145), Expect = 6e-08
Identities = 40/128 (31%), Positives = 73/128 (57%)
Frame = +1
Query: 55 TRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
T + EVT+ + ++RAE+ Y ++D VS ++R++RK K K R KG L
Sbjct: 99 TFKTEVTIQLP-YLLLRAEDTQTDMYQTVDFVSDKLERQIRKYKTKVNRKSRE-KGYKGL 156
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
+ ++ + P+ E+ P+ +D+ E+VRTK+ D+ P+ V EA+ Q+E++ H+
Sbjct: 157 ENTDFMAVDPAAAVEE-----PEPEDDGL---EIVRTKHVDLKPMDVEEAVLQMELLGHE 208
Query: 415 FYAFRNEE 438
F+ F++ E
Sbjct: 209 FFIFQDAE 216
[183][TOP]
>UniRef100_C6VLR5 Ribosomal protein S30EA n=3 Tax=Lactobacillus plantarum
RepID=C6VLR5_LACPJ
Length = 188
Score = 60.5 bits (145), Expect = 6e-08
Identities = 42/129 (32%), Positives = 68/129 (52%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + V+RAEE + Y S+DLV+ ++R++RK K K R KG
Sbjct: 50 KTAKVEVTIPLP-YLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSRE-KGYKA 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+ F+ DE D +++L +VVRTK + P+ EAI Q++M+ H
Sbjct: 108 IDFAAT----------DETVAAADNDQDDKL--DVVRTKRVALKPMDNEEAILQMDMLGH 155
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 156 DFFIYEDAE 164
[184][TOP]
>UniRef100_B6FRG1 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM
1787 RepID=B6FRG1_9CLOT
Length = 178
Score = 60.5 bits (145), Expect = 6e-08
Identities = 41/127 (32%), Positives = 68/127 (53%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K H ++R+E+ ++ Y SIDLV +I+R+LRK K+K R +G N
Sbjct: 48 QKIEVTIPVKGH-IIRSEQVSDDMYVSIDLVEEVIERQLRKYKNKLI--ARQQEGGN--- 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
+ E E E +DE +++RTK F + P+ +A Q+E++ H+F
Sbjct: 102 ---------FQSEFFEAEQDTSNNDE----IKIIRTKRFGIKPMFPEDACVQMELLGHNF 148
Query: 418 YAFRNEE 438
+ F N E
Sbjct: 149 FVFSNAE 155
[185][TOP]
>UniRef100_A8SVF0 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC
27759 RepID=A8SVF0_9FIRM
Length = 175
Score = 60.5 bits (145), Expect = 6e-08
Identities = 42/127 (33%), Positives = 69/127 (54%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K H ++RAE+ ++ Y SIDLV +I+R++ K + K D K N
Sbjct: 48 QKIEVTIPMKGH-IIRAEQVSDDMYVSIDLVVEVIERQVTKHRKKLID-----KEQNVAY 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
+E + ED ED+ +I ++VRTK F + P+ +A Q++++ H+F
Sbjct: 102 LNEAFV---DEDIEDDDDI------------KIVRTKKFAVKPMYPEDACIQMDLLGHNF 146
Query: 418 YAFRNEE 438
Y FRN E
Sbjct: 147 YVFRNAE 153
[186][TOP]
>UniRef100_A4ECY7 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
ATCC 25986 RepID=A4ECY7_9ACTN
Length = 194
Score = 60.5 bits (145), Expect = 6e-08
Identities = 37/115 (32%), Positives = 57/115 (49%)
Frame = +1
Query: 88 RHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPS 267
R V+R EH Y +IDL + + R+LRK K K D NR + P
Sbjct: 63 RGSVIRVAEHGADMYAAIDLSADKVTRQLRKFKTKVVD--------NRQGGASAADVAPV 114
Query: 268 EDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRN 432
E ED ++ ++D++ L+ E K D+ P+T +A+ Q +++ HDFY F N
Sbjct: 115 ERVEDLADLLLPEEDDDLLVRE----KVIDVTPMTEEQALVQTDLLGHDFYVFEN 165
[187][TOP]
>UniRef100_C5D7S1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. WCH70 RepID=C5D7S1_GEOSW
Length = 182
Score = 60.1 bits (144), Expect = 8e-08
Identities = 37/114 (32%), Positives = 64/114 (56%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++RAEE + Y +IDLV+ ++R++RK K K +L+ E L +++
Sbjct: 63 LLRAEERHDDMYAAIDLVADKLERQIRKHKTKVN---------RKLRNKETKQVLVTQNN 113
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+E +++EEE E+VRTK+F + P+ EAI Q+ ++ H+F+ F N E
Sbjct: 114 NPPVE----ENEEEEF--EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAE 161
[188][TOP]
>UniRef100_C6LIX7 Ribosomal subunit interface protein n=1 Tax=Bryantella
formatexigens DSM 14469 RepID=C6LIX7_9FIRM
Length = 176
Score = 60.1 bits (144), Expect = 8e-08
Identities = 42/128 (32%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPN-RL 234
++ EVT+ K + ++R+E+ + Y SIDLV +I+R+LRK K+K +H +G N R
Sbjct: 48 QKIEVTIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKLI--AKHQEGSNFRR 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
+F E +E+ +E EE+ ++RTK+F + P+ +A Q+E++ H+
Sbjct: 105 EFIE---------KEETVE-------PEEV--NIIRTKHFGIKPMYPEDACIQMELLGHN 146
Query: 415 FYAFRNEE 438
F+ F N E
Sbjct: 147 FFVFCNAE 154
[189][TOP]
>UniRef100_A9VQA3 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Bacillus cereus group RepID=A9VQA3_BACWK
Length = 180
Score = 60.1 bits (144), Expect = 8e-08
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRIEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSMKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D EE E+VRTK FD+ P+ V EAI Q++M+ H
Sbjct: 105 NF---ILP----------EAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHS 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[190][TOP]
>UniRef100_C2KSB4 Ribosome-associated inhibitor protein Y n=1 Tax=Mobiluncus mulieris
ATCC 35243 RepID=C2KSB4_9ACTO
Length = 209
Score = 60.1 bits (144), Expect = 8e-08
Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 15/147 (10%)
Frame = +1
Query: 43 RGPR----TRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGR 210
R PR R E+T++ K VVRAE + Y ++D+ + + +LR+ +D+ +H R
Sbjct: 45 RNPRQVDTAERIEITVHGKGP-VVRAEASSSDRYAAVDIAAGKLYERLRRARDRIKNHRR 103
Query: 211 HMKGPN----------RLKFSEVILPL-PSEDEEDEIEITPQKDDEEELIEEVVRTKYFD 357
+ P+ + K + V PL P E ED++ +P +VR K +
Sbjct: 104 YDIPPDVDLDVAMPEPQAKPAPVRAPLKPGEVREDQLGDSPV----------IVREKLHE 153
Query: 358 MPPLTVFEAIDQLEMVDHDFYAFRNEE 438
P++V EA+D++E+V H FY F + E
Sbjct: 154 TTPVSVEEALDEMELVGHPFYLFIDSE 180
[191][TOP]
>UniRef100_C2C307 Ribosome-associated inhibitor protein Y n=1 Tax=Listeria grayi DSM
20601 RepID=C2C307_LISGR
Length = 189
Score = 60.1 bits (144), Expect = 8e-08
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR--LKFSEVILPLPSE 270
V+RAEE Y S+DL++ ++R++RK K K R KG + FSE+ PSE
Sbjct: 64 VLRAEETNGDLYASVDLIADKLERQIRKHKTKVNRKFRD-KGSEKDYFAFSEINDSTPSE 122
Query: 271 DEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ + + +I E+VRTK F + P+ EA+ Q+ ++ H+F+ F + E
Sbjct: 123 ETDSDYDI------------EIVRTKSFSLKPMDSEEAVLQMNLLGHNFFVFNDAE 166
[192][TOP]
>UniRef100_C0WJ60 Ribosome-associated inhibitor protein Y n=1 Tax=Corynebacterium
accolens ATCC 49725 RepID=C0WJ60_9CORY
Length = 214
Score = 60.1 bits (144), Expect = 8e-08
Identities = 39/136 (28%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIK-DKETDHGRH-- 213
R + R ++T K H + RAE ++ Y +++ ++R LRK+K +E G H
Sbjct: 55 REAESDRIQITATGKGH-IARAEAKEDSFYAALETAMGKMERSLRKVKVRREYVKGGHRA 113
Query: 214 MKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVFEAID 390
KG + +E++ ++ ++E + P + E++ ++VRTK P++V +A+
Sbjct: 114 QKGTGEIA-AEMVAEAEAQRAKEERLVDPYAETVEDVRPGQIVRTKEHPATPMSVDDALS 172
Query: 391 QLEMVDHDFYAFRNEE 438
++E+V HDF+ F NEE
Sbjct: 173 EMELVGHDFFLFVNEE 188
[193][TOP]
>UniRef100_C0BAM2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC
27758 RepID=C0BAM2_9FIRM
Length = 189
Score = 60.1 bits (144), Expect = 8e-08
Identities = 45/127 (35%), Positives = 66/127 (51%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + ++R+E+ + Y SIDLV II+R+LRK K K +G + +
Sbjct: 59 QKIEVTIPVKGN-IIRSEQESSDMYVSIDLVEEIIERQLRKYKTKLI---AKQQGGHDFR 114
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
E I S E DEIEI VRTK F + P+ +A Q+E++ H+F
Sbjct: 115 -QEFIESDTSAAESDEIEI--------------VRTKRFGIKPMFPEDACIQMELLGHNF 159
Query: 418 YAFRNEE 438
Y F N E
Sbjct: 160 YVFSNAE 166
[194][TOP]
>UniRef100_C4L5L1 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sp. AT1b RepID=C4L5L1_EXISA
Length = 187
Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/114 (35%), Positives = 59/114 (51%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++RAE+ Y +IDLV ++R++RK K K GR +G E L D+
Sbjct: 63 LLRAEDINLDMYAAIDLVVDKLERQIRKHKTKLNRKGRGKEGG----VGEYFKSLEGPDD 118
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
TP DE+E E+VRTK F + P+ EAI Q++M+ H F+ F + E
Sbjct: 119 ------TPAVYDEDEAELELVRTKRFTLKPMDTEEAILQMDMLGHSFFVFSDAE 166
[195][TOP]
>UniRef100_A3CPW1 30S ribosomal interface protein S30EA, putative n=1
Tax=Streptococcus sanguinis SK36 RepID=A3CPW1_STRSV
Length = 180
Score = 59.7 bits (143), Expect = 1e-07
Identities = 43/129 (33%), Positives = 71/129 (55%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ +RAE+ ++ YGSIDLV+ I+R++RK K K ++ NR
Sbjct: 50 KTAKVEVTIPLGSI-TLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNR 101
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
K + L S EE EE+ +VVR+K+ D+ P+ + EAI Q++++ H
Sbjct: 102 NKVATSQLFTDSFAEE-----------AEEVPSKVVRSKHIDLKPMDLEEAILQMDLLGH 150
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 151 DFFIYSDAE 159
[196][TOP]
>UniRef100_C8NWC8 S30AE family protein n=1 Tax=Corynebacterium genitalium ATCC 33030
RepID=C8NWC8_9CORY
Length = 224
Score = 59.7 bits (143), Expect = 1e-07
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIK-DKETDHGRHMK 219
R + R ++T K H + RAE ++ Y +++ ++R LRK+K +E G H
Sbjct: 64 REAQANRIQITATGKGH-LARAEAKEDSFYAALESAIGKMERSLRKVKVRREISMGGHRA 122
Query: 220 GPNRLKFSEVILPLPSEDEEDEIEITPQKDDE---EELIEEVVRTKYFDMPPLTVFEAID 390
+ + + ++ + +++ + K E E L +VVRTK P++V EA+
Sbjct: 123 PKSTYEVTSELVAEAEQARQEQDDRYADKYAESINENLPGQVVRTKEHPATPMSVDEALS 182
Query: 391 QLEMVDHDFYAFRNEE 438
++E+V HDFY F N+E
Sbjct: 183 EMELVGHDFYLFINDE 198
[197][TOP]
>UniRef100_C7XZ04 Sigma 54 modulation protein/SSU ribosomal protein S30P n=3
Tax=Lactobacillus jensenii RepID=C7XZ04_9LACO
Length = 187
Score = 59.7 bits (143), Expect = 1e-07
Identities = 37/114 (32%), Positives = 61/114 (53%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
V+RAEE ++ Y SID VS ++R++RK K + GR KG + + P+E+E
Sbjct: 70 VLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KG-----VKDFFIETPAEEE 123
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ E ++VR K + P+ EAI Q++M++HDF+ F++ E
Sbjct: 124 KPTSEF------------DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAE 165
[198][TOP]
>UniRef100_C4VLP1 Ribosome-associated protein Y n=3 Tax=Lactobacillus jensenii
RepID=C4VLP1_9LACO
Length = 181
Score = 59.7 bits (143), Expect = 1e-07
Identities = 37/114 (32%), Positives = 61/114 (53%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
V+RAEE ++ Y SID VS ++R++RK K + GR KG + + P+E+E
Sbjct: 64 VLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KG-----VKDFFIETPAEEE 117
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ E ++VR K + P+ EAI Q++M++HDF+ F++ E
Sbjct: 118 KPTSEF------------DIVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAE 159
[199][TOP]
>UniRef100_C3GRH2 Sigma 54 modulation protein / SSU ribosomal protein S30P n=1
Tax=Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1 RepID=C3GRH2_BACTU
Length = 180
Score = 59.7 bits (143), Expect = 1e-07
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV ++R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSMKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[200][TOP]
>UniRef100_C2SSP0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus BDRD-ST196
RepID=C2SSP0_BACCE
Length = 180
Score = 59.7 bits (143), Expect = 1e-07
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRIEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSVKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D EE E+VRTK FD+ P+ V EAI Q++M+ H
Sbjct: 105 NF---ILP----------EAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHS 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[201][TOP]
>UniRef100_C2Q3D0 Ribosome-associated factor Y n=2 Tax=Bacillus cereus
RepID=C2Q3D0_BACCE
Length = 180
Score = 59.7 bits (143), Expect = 1e-07
Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R KG +
Sbjct: 48 QRIEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSIKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D EE E+VRTK FD+ P+ V EAI Q++M+ H
Sbjct: 105 NF---ILP----------EAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHS 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[202][TOP]
>UniRef100_B6G8G1 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
13279 RepID=B6G8G1_9ACTN
Length = 194
Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/128 (31%), Positives = 65/128 (50%)
Frame = +1
Query: 49 PRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPN 228
P EVT+ R V+R EH Y +IDL + + R+LRK K + D+ +
Sbjct: 51 PNPAIVEVTVRA-RGSVIRVAEHGADMYAAIDLAADKVTRQLRKFKTRVVDNRQQ----- 104
Query: 229 RLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVD 408
L +EV P D D + P+++D++ +VR K ++ P+T +A+ Q +++
Sbjct: 105 GLSAAEVAPVEPVADLADLL--IPEEEDDQ-----LVRVKEIELTPMTEEQALVQTDLLG 157
Query: 409 HDFYAFRN 432
HDFY F N
Sbjct: 158 HDFYVFEN 165
[203][TOP]
>UniRef100_B4BN91 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. G11MC16 RepID=B4BN91_9BACI
Length = 182
Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Frame = +1
Query: 91 HGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSE 270
H ++RAEE + Y +IDLV+ ++R++RK K K + K +R K ++ P+P+
Sbjct: 61 HLLLRAEERHDDMYAAIDLVTDKLERQIRKHKTKV-----NRKLRDREKGVKLAAPVPNG 115
Query: 271 DEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
E +DEE E+VRTK+F + P+ EAI Q+ ++ H+F+ F N E
Sbjct: 116 AAAAE-------NDEEF---EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAE 161
[204][TOP]
>UniRef100_A0RKX8 Sigma 54 modulation protein / SSU ribosomal protein S30P n=26
Tax=Bacillus cereus group RepID=A0RKX8_BACAH
Length = 180
Score = 59.7 bits (143), Expect = 1e-07
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV ++R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSMKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[205][TOP]
>UniRef100_A6CQE4 Ribosomal subunit interface protein n=1 Tax=Bacillus sp. SG-1
RepID=A6CQE4_9BACI
Length = 189
Score = 59.7 bits (143), Expect = 1e-07
Identities = 42/126 (33%), Positives = 63/126 (50%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVT+ H V+RAEE E Y +IDL+ ++R++RK K K R P
Sbjct: 53 KVEVTI-PMPHLVLRAEERHEDMYAAIDLIVDKLERQIRKHKTKVNRKMREKGSPKEFFA 111
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
++ L +E K E E +EVVRTK F++ P+ EAI Q+ ++ H F+
Sbjct: 112 AQEGLTTSQLNE---------KARETEENDEVVRTKQFNLKPMDSEEAILQMNLLGHSFF 162
Query: 421 AFRNEE 438
F + E
Sbjct: 163 IFTDAE 168
[206][TOP]
>UniRef100_Q5MCR1 Chloroplast-specific ribosome-associated protein n=1 Tax=Volvox
carteri f. nagariensis RepID=Q5MCR1_VOLCA
Length = 232
Score = 59.7 bits (143), Expect = 1e-07
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
VDV LS RGG G + ++ +VT++T R+GVVR E+ Y +IDLV I+ KL +
Sbjct: 111 VDVTLSARGGDTGTHGKKEQKVDVTIFTLRNGVVRVEDRESNLYAAIDLVCDKIRSKLTR 170
Query: 181 IKDKETDHGR 210
+K+K G+
Sbjct: 171 VKEKAITKGK 180
[207][TOP]
>UniRef100_Q8ENI5 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis
RepID=Q8ENI5_OCEIH
Length = 185
Score = 59.3 bits (142), Expect = 1e-07
Identities = 40/127 (31%), Positives = 68/127 (53%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
+R EVT+ + ++R E Y ++DLV ++R++RK K K R P
Sbjct: 50 QRIEVTI-PMTNLLLRGEVQHIDLYAAVDLVVDKLERQIRKHKTKINRKFRQNGSPKHA- 107
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F+E+ E E + ++DE +L E+VRTK F++ P+ EAI Q++M+ H+F
Sbjct: 108 FAEM---------EKEARLAEDEEDENQL--EIVRTKRFNLKPMDSEEAILQMDMLGHEF 156
Query: 418 YAFRNEE 438
+ F N++
Sbjct: 157 FVFTNDD 163
[208][TOP]
>UniRef100_B1VFA5 Putative uncharacterized protein n=1 Tax=Corynebacterium
urealyticum DSM 7109 RepID=B1VFA5_CORU7
Length = 225
Score = 59.3 bits (142), Expect = 1e-07
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG 222
R + R ++T K H + RAE ++ Y ++++ + ++R LRK+K + +
Sbjct: 68 RADESDRIQITASGKGH-IARAEAKEDSFYAALEVALARMERSLRKVKVRRKTPKSGHRA 126
Query: 223 PNRLKFSEVILPLPSEDEEDE----IEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAID 390
P + + L ++ ++E ++ P +D + +VVR+K P++V EA+
Sbjct: 127 PVGMGEATAALVEEAKPHQEEKPGKYDVDPYEDQFQP--GQVVRSKTHSAKPMSVDEALS 184
Query: 391 QLEMVDHDFYAFRNEE 438
++E+V HDFY F NEE
Sbjct: 185 EMELVGHDFYLFVNEE 200
[209][TOP]
>UniRef100_A4ISU0 Ribosomal subunit interface protein n=1 Tax=Geobacillus
thermodenitrificans NG80-2 RepID=A4ISU0_GEOTN
Length = 182
Score = 59.3 bits (142), Expect = 1e-07
Identities = 40/116 (34%), Positives = 65/116 (56%)
Frame = +1
Query: 91 HGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSE 270
H ++RAEE + Y +IDLV+ ++R++RK K K + K +R K ++ P+P+
Sbjct: 61 HLLLRAEERHDDMYAAIDLVTDKLERQIRKHKTKV-----NRKLRDREKGVKLAAPVPNG 115
Query: 271 DEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
E +DEE E+VRTK+F + P+ EAI Q+ ++ H+F+ F N E
Sbjct: 116 AAAVE-------NDEEF---EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAE 161
[210][TOP]
>UniRef100_C7NFI2 Ribosomal subunit interface protein n=1 Tax=Kytococcus sedentarius
DSM 20547 RepID=C7NFI2_KYTSD
Length = 245
Score = 59.3 bits (142), Expect = 1e-07
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG 222
R R E+T + KR VVRAE AE Y ++D V + + ++R++ D+ H KG
Sbjct: 49 RSEDAERIEITCHDKRT-VVRAEASAEREYEALDAVMAKVTERVRRLHDRRKVHKGRPKG 107
Query: 223 PNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEE----------------------- 333
+ + + P+ + E +E ++ E+ELIE
Sbjct: 108 SSVAAATAALEPVANG--ESIVEEAKRRQREQELIEAGVDISMLPSDPVVAGLGGDANCP 165
Query: 334 -VVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
VRTK P+T+ +A+ ++E+V HDFY + + E
Sbjct: 166 ISVRTKVHQAEPMTLDQALARMELVGHDFYLYVDAE 201
[211][TOP]
>UniRef100_C6J2M0 Ribosomal subunit interface protein n=1 Tax=Paenibacillus sp. oral
taxon 786 str. D14 RepID=C6J2M0_9BACL
Length = 183
Score = 59.3 bits (142), Expect = 1e-07
Identities = 42/112 (37%), Positives = 57/112 (50%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
V+RAE+ ++ Y SID V ++R++RK K K R N L + + DE
Sbjct: 62 VLRAEDRSDDMYASIDAVVDKLERQIRKHKTKINRKLRQKGVKNSLFVEDATTGSVALDE 121
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRN 432
EEEL EVVRTK F + P+ V EAI Q+ MV H+F+ F N
Sbjct: 122 -----------GEEEL--EVVRTKRFTLKPMDVEEAILQMNMVGHNFFVFSN 160
[212][TOP]
>UniRef100_C2ZFA1 Ribosome-associated factor Y n=2 Tax=Bacillus cereus
RepID=C2ZFA1_BACCE
Length = 180
Score = 59.3 bits (142), Expect = 1e-07
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV ++R++RK K K R KG +
Sbjct: 48 QRIEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[213][TOP]
>UniRef100_C2YZ14 Ribosome-associated factor Y n=1 Tax=Bacillus cereus AH1271
RepID=C2YZ14_BACCE
Length = 180
Score = 59.3 bits (142), Expect = 1e-07
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV ++R++RK K K R KG +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKT 104
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
F ILP E D EE E+VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 105 NF---ILP----------EAVAVLDAVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[214][TOP]
>UniRef100_C0WUJ7 Ribosome-associated inhibitor protein Y n=3 Tax=Lactobacillus
RepID=C0WUJ7_LACBU
Length = 194
Score = 59.3 bits (142), Expect = 1e-07
Identities = 37/113 (32%), Positives = 62/113 (54%)
Frame = +1
Query: 100 VRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDEE 279
+RAEE + Y S+DLV+ ++R++RK K K R KG L+F +P++D+
Sbjct: 72 LRAEELSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKNLEF------VPNDDQ- 123
Query: 280 DEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
T D+ + +VVRTK + P+ EAI Q++M+ HDF+ + + +
Sbjct: 124 -----TTSDSDDNQSQFDVVRTKRLALKPMDNEEAILQMDMLGHDFFIYEDAD 171
[215][TOP]
>UniRef100_C5VEF3 S30AE family protein n=2 Tax=Corynebacterium matruchotii
RepID=C5VEF3_9CORY
Length = 219
Score = 59.3 bits (142), Expect = 1e-07
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG 222
R + R ++T K H + RAE ++ Y +++ V S ++R LRK+K++ + +
Sbjct: 62 RADESDRIQITATGKGH-IARAEAKEDSFYAALETVLSRMERSLRKVKERRSISLSGHRA 120
Query: 223 PNRLKFSEVILPLPSEDEE-----DEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVFEA 384
P + E L E ++ + + P D E+++ +VVRTK P++V +A
Sbjct: 121 P--IGTGEAAKGLVKEADKVQAAGSKYDHDPYADQVEDVLPGQVVRTKEHVANPMSVDDA 178
Query: 385 IDQLEMVDHDFYAFRNEE 438
+ ++E+V HDFY F N+E
Sbjct: 179 LSEMELVGHDFYLFINKE 196
[216][TOP]
>UniRef100_A8W0Z3 Maf protein n=1 Tax=Bacillus selenitireducens MLS10
RepID=A8W0Z3_9BACI
Length = 197
Score = 59.3 bits (142), Expect = 1e-07
Identities = 39/110 (35%), Positives = 59/110 (53%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++RAEE Y ++DLV ++R++RK K K R +G + LK+ +E E
Sbjct: 76 LLRAEEKHADMYAAVDLVIEKLERQIRKHKTKVN---RKFRGEDSLKYM-----FKNELE 127
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAF 426
E TP D E+VRTK FD+ P+ EAI Q++M+ H+F+ F
Sbjct: 128 PISEEETPDDD------YEIVRTKRFDLKPMDAEEAILQMDMLGHNFFVF 171
[217][TOP]
>UniRef100_A5Z528 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum
ATCC 27560 RepID=A5Z528_9FIRM
Length = 179
Score = 59.3 bits (142), Expect = 1e-07
Identities = 40/127 (31%), Positives = 69/127 (54%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K ++RAEE ++ Y SID+V I+R+L K K+K D + +K
Sbjct: 48 QKVEVTIPVKGR-IIRAEEISDDMYVSIDMVEETIERQLVKYKNKIIDKKKSIKE----A 102
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F+E + EDE DE+++ ++ +TK F + P+ EA ++E++ H+F
Sbjct: 103 FTETYIEADYEDE-----------DEDQI--KIKKTKRFGIKPMDPEEACVEMELLGHNF 149
Query: 418 YAFRNEE 438
+ F N E
Sbjct: 150 FVFLNAE 156
[218][TOP]
>UniRef100_A5KKP2 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC
27756 RepID=A5KKP2_9FIRM
Length = 198
Score = 59.3 bits (142), Expect = 1e-07
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K ++R+E+ + Y SIDLV +I+R+LRK K+K +
Sbjct: 61 QKIEVTIPVKG-SIIRSEQTSSDMYVSIDLVEEVIERQLRKYKNKLVAKSQ--------- 110
Query: 238 FSEVILPLPSEDEEDE-IEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
+PS + E IE + D++E+ +VRTK F + P+ +A Q+E++ H
Sbjct: 111 -GHPTAAVPSGSIKKEFIESDDESSDDDEI--RIVRTKKFGIKPMFPEDACIQMELLGHS 167
Query: 415 FYAFRNEE 438
F+ F N E
Sbjct: 168 FFVFSNAE 175
[219][TOP]
>UniRef100_Q38YD3 30S ribosomal interface protein S30EA n=1 Tax=Lactobacillus sakei
subsp. sakei 23K RepID=Q38YD3_LACSS
Length = 181
Score = 58.9 bits (141), Expect = 2e-07
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK--ETDHGRHMKGP 225
+T + EVT+ + V+RAEE + YGS+DLV+ ++R++RK K K R +KG
Sbjct: 50 KTAKVEVTIPLP-YLVLRAEETSPDMYGSVDLVTDKLERQIRKYKTKINRKSRERGIKGV 108
Query: 226 NRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMV 405
+ SE LP EE + +VVRTK + P+ EAI Q+ M+
Sbjct: 109 ELVVSSEETLP------------------EEPM--QVVRTKRVSLKPMDSEEAILQMNML 148
Query: 406 DHDFYAFRNEE 438
H+F+ F + E
Sbjct: 149 GHEFFIFEDSE 159
[220][TOP]
>UniRef100_C0MH43 Sigma 54 modulation protein / S30EA ribosomal protein n=1
Tax=Steptococcus equi subsp. zooepidemicus H70
RepID=C0MH43_STRS7
Length = 182
Score = 58.9 bits (141), Expect = 2e-07
Identities = 44/129 (34%), Positives = 70/129 (54%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ +RAE+ ++ YGSIDLV I+R++RK K K R +
Sbjct: 50 KTAKVEVTI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHR-----EK 103
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
+ S+V SE E +++E TP+ +VVRTK + P+ V EA Q+E++ H
Sbjct: 104 VSTSQV---FTSEFEAEQVEETPE--------IKVVRTKNVTLKPMDVEEARLQMELLGH 152
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 153 DFFIYTDAE 161
[221][TOP]
>UniRef100_B5YF17 Ribosomal subunit interface protein n=1 Tax=Dictyoglomus
thermophilum H-6-12 RepID=B5YF17_DICT6
Length = 179
Score = 58.9 bits (141), Expect = 2e-07
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Frame = +1
Query: 46 GPRTRRCEVTLYTKRHG-VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKG 222
G + R EVT+ K +G +++A E + SIDLV ++ +L+++K+K D GR
Sbjct: 49 GSKRHRVEVTI--KANGRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVDKGRRA-- 104
Query: 223 PNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEM 402
E EI +K+ EE+ +VV+ K F + P+ V EAI Q+E+
Sbjct: 105 ------------------ESIREILAEKEVEEK--PQVVKVKRFLLKPMDVEEAILQMEL 144
Query: 403 VDHDFYAFRNEE 438
+ HDF+ FR+ E
Sbjct: 145 LGHDFFIFRDAE 156
[222][TOP]
>UniRef100_A0ALJ5 YfiA protein n=2 Tax=Listeria RepID=A0ALJ5_LISW6
Length = 187
Score = 58.9 bits (141), Expect = 2e-07
Identities = 38/114 (33%), Positives = 59/114 (51%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
V+RAEE + Y SIDL+ ++R++RK K K R KG R F+
Sbjct: 64 VLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAERDYFAY---------- 112
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
D TP +++E + E+VRTK F + P+ EA+ Q+ ++ H FY + + E
Sbjct: 113 SDVNGSTPPEENESDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAE 166
[223][TOP]
>UniRef100_C6QNN3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Geobacillus sp. Y4.1MC1 RepID=C6QNN3_9BACI
Length = 183
Score = 58.9 bits (141), Expect = 2e-07
Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKET----DHGRHMKGPNRLKFSEVILPLP 264
++RAEE + Y +IDLV+ ++R++RK K K D + +K + + V P
Sbjct: 63 LLRAEERHDDMYAAIDLVADKLERQIRKHKTKVNRKLRDRDKEVK-----QVATVQTNAP 117
Query: 265 SEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ED E EEE E+VRTK+F + P+ EAI Q+ ++ H+F+ F N E
Sbjct: 118 AEDNE-----------EEEF--EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAE 162
[224][TOP]
>UniRef100_C4GCR0 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles
DSM 14600 RepID=C4GCR0_9FIRM
Length = 176
Score = 58.9 bits (141), Expect = 2e-07
Identities = 44/127 (34%), Positives = 66/127 (51%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
+R E+T+ K G+VR E+ + Y SID S I+ +L K + K D R KG
Sbjct: 48 QRVELTIPVKG-GIVRCEKTTDDMYVSIDAASEGIEDQLTKYRHKLVD--RAHKG----- 99
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
+L E+ DE D+EEE+ ++VRTK FD+ P+ +A Q+E++ H F
Sbjct: 100 ---AVLNAAFEEGFDE-------DEEEEI--KIVRTKKFDLKPMYAEDACAQMELLGHSF 147
Query: 418 YAFRNEE 438
+ F N E
Sbjct: 148 FVFTNAE 154
[225][TOP]
>UniRef100_C3JG54 S30AE family protein n=2 Tax=Rhodococcus erythropolis
RepID=C3JG54_RHOER
Length = 226
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/127 (28%), Positives = 68/127 (53%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
+R E+T K V RAE A++ Y + + V ++ +LR+ KD++ H + + +
Sbjct: 80 QRVEITARGKGP-VARAEASADSFYAAFESVIDKLESRLRRTKDRKKVHYGDKRPVSVAE 138
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
+ ++ S +I + Q+ DE + VVRTK P+T+ +A+ ++E+V HDF
Sbjct: 139 ATASLVDADSLGVTPDISLNGQEPDEYDGPGRVVRTKDHPAEPMTIDDALYEMELVGHDF 198
Query: 418 YAFRNEE 438
+ F ++E
Sbjct: 199 FLFHDKE 205
[226][TOP]
>UniRef100_C9RVC1 Sigma 54 modulation protein/ribosomal protein S30EA n=2
Tax=Geobacillus RepID=C9RVC1_9BACI
Length = 182
Score = 58.9 bits (141), Expect = 2e-07
Identities = 38/116 (32%), Positives = 60/116 (51%)
Frame = +1
Query: 91 HGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSE 270
H ++RAEE E Y +IDLV+ ++R++RK K K R + +L I +E
Sbjct: 61 HLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVNRKLRDREKEAKLAAPVSIGASAAE 120
Query: 271 DEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+EE+ E+VRTK+F + P+ EAI Q+ ++ H+F+ F N E
Sbjct: 121 NEEEF---------------EIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAE 161
[227][TOP]
>UniRef100_C2WEE0 Ribosome-associated factor Y n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WEE0_BACCE
Length = 180
Score = 58.9 bits (141), Expect = 2e-07
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Frame = +1
Query: 58 RRCEVTL-YTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRL 234
+R EVT+ +T ++RAEE Y +IDLV I+R++RK K K R P
Sbjct: 48 QRVEVTIPFTDL--LLRAEETHSDMYAAIDLVVDKIERQIRKHKTKVNRKLREKGSPKTT 105
Query: 235 KFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHD 414
E +ED++E+ VRTK FD+ P+ V EAI Q++M+ H+
Sbjct: 106 FILTESAATLEEVKEDDLEL--------------VRTKRFDLKPMDVEEAILQMDMLGHN 151
Query: 415 FYAFRNEE 438
F+ F N +
Sbjct: 152 FFVFTNAD 159
[228][TOP]
>UniRef100_C2AF84 SSU ribosomal protein S30P; sigma 54 modulation protein n=1
Tax=Thermomonospora curvata DSM 43183 RepID=C2AF84_THECU
Length = 221
Score = 58.9 bits (141), Expect = 2e-07
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 19/148 (12%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDH-GRHMKGPN 228
R R E+T+ + R V+RAE AE YG++DL ++ +LR+ D+ H + P
Sbjct: 52 RRERVELTIRS-RGPVIRAEAAAEDRYGALDLALDKLEARLRRSADRRKIHYNSGTRAPA 110
Query: 229 RLKFSEVILPLPSE-DEEDEIEITPQKDDEE--ELIEE---------------VVRTKYF 354
+L E + P+ ED E P + E EE VVR K+
Sbjct: 111 KLAHLEPLTEPPAAAPPEDSAEGAPAAEPAAATEPAEEGGNVVPIAMDGDGPLVVREKFH 170
Query: 355 DMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
P+T+ +A+ ++E+V HDF+ FR++E
Sbjct: 171 RSAPMTIDQALYEMELVGHDFFLFRDKE 198
[229][TOP]
>UniRef100_C0BS22 Putative uncharacterized protein n=1 Tax=Bifidobacterium
pseudocatenulatum DSM 20438 RepID=C0BS22_9BIFI
Length = 219
Score = 58.9 bits (141), Expect = 2e-07
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
+R E+T+ R VVRAE + + ++D+ + +LR+ +D+ DH R P +
Sbjct: 54 KRVEITVIAGRT-VVRAEASSADEFSALDMALDKLTLRLRRTRDRRKDHRRGYSDPVPVD 112
Query: 238 FSEVILPLPSEDEEDEI-----------EITPQKDDEEELIEE--VVRTKYFDMPPLTVF 378
V+ P P +E E+ E+ P + E ++ + V+R K P+T+
Sbjct: 113 LG-VVEPTPEVEEPVEVPNNSPAEAVAAELGPGESVEVQVGDTPIVIRRKLHIAEPMTID 171
Query: 379 EAIDQLEMVDHDFYAFRNEE 438
EA+ ++E++ HDF+ F N+E
Sbjct: 172 EALYEMELIGHDFFLFVNKE 191
[230][TOP]
>UniRef100_UPI000196CE6C hypothetical protein CATMIT_02221 n=1 Tax=Catenibacterium mitsuokai
DSM 15897 RepID=UPI000196CE6C
Length = 193
Score = 58.5 bits (140), Expect = 2e-07
Identities = 39/130 (30%), Positives = 72/130 (55%)
Frame = +1
Query: 49 PRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPN 228
P ++ EVT+ T+ + ++RAEE ++ Y +IDLV ++R++RK K K + ++ N
Sbjct: 62 PFGQKIEVTIPTE-YVLLRAEETSDDLYEAIDLVIDKLERQIRKYKTKLSRKSKN----N 116
Query: 229 RLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVD 408
+L F+ L E EE+++ VV+TK + P+ + EAI Q+E++
Sbjct: 117 KLAFNINTLEALEEPEEEDV---------------VVKTKTINPKPMDMEEAIMQMELIG 161
Query: 409 HDFYAFRNEE 438
H F+ +++ E
Sbjct: 162 HSFFVYKDIE 171
[231][TOP]
>UniRef100_Q5WDF7 Ribosomal protein S30EA n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WDF7_BACSK
Length = 184
Score = 58.5 bits (140), Expect = 2e-07
Identities = 47/146 (32%), Positives = 73/146 (50%)
Frame = +1
Query: 1 VDVRLSTRGGGEFGRGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRK 180
V+V+L G GE EVT+ + ++R EE Y +ID+V ++R++RK
Sbjct: 39 VNVKLQVLGSGESS-------IEVTIPMPKL-LLRGEEINADMYAAIDIVVEKLERQIRK 90
Query: 181 IKDKETDHGRHMKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDM 360
K K R +G + F + PL E ED+ EL EVVRTK F++
Sbjct: 91 YKTKVNRKFRQ-EGSLKYMFKNELEPLRDEVAEDD-----------EL--EVVRTKRFNL 136
Query: 361 PPLTVFEAIDQLEMVDHDFYAFRNEE 438
P+ EAI Q++++ H+F+ F + E
Sbjct: 137 KPMDAEEAILQMDLLGHNFFVFSDAE 162
[232][TOP]
>UniRef100_Q04BJ3 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365 RepID=Q04BJ3_LACDB
Length = 185
Score = 58.5 bits (140), Expect = 2e-07
Identities = 38/114 (33%), Positives = 62/114 (54%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
V+RAEE + Y SID VS ++R++RK K + R KG E +P + E
Sbjct: 64 VLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KG-----VEEFFIPEDAPVE 117
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
E++ E P + ++VR K ++ P+ EAI Q++M++HDF+ F++ E
Sbjct: 118 EEKEEKAP--------MFKIVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAE 163
[233][TOP]
>UniRef100_Q03SQ1 SSU ribosomal protein S30P / sigma 54 modulation protein n=1
Tax=Lactobacillus brevis ATCC 367 RepID=Q03SQ1_LACBA
Length = 186
Score = 58.5 bits (140), Expect = 2e-07
Identities = 41/129 (31%), Positives = 63/129 (48%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
+T + EVT+ + +RAEE + Y S+DLV+ ++R++RK K K R KG
Sbjct: 50 KTAKVEVTIPLP-YLTLRAEETSPDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGYKN 107
Query: 232 LKFSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDH 411
L FS E E+E VVRTK + P+ EA+ Q++M+ H
Sbjct: 108 LDFSTETSESDKPAEGSELE--------------VVRTKRVSLKPMDTEEAVLQMDMLGH 153
Query: 412 DFYAFRNEE 438
DF+ + + E
Sbjct: 154 DFFIYEDAE 162
[234][TOP]
>UniRef100_C9YZK5 Putative uncharacterized protein n=1 Tax=Streptomyces scabiei 87.22
RepID=C9YZK5_STRSC
Length = 241
Score = 58.5 bits (140), Expect = 2e-07
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 13/142 (9%)
Frame = +1
Query: 52 RTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR 231
R+ R E+TL++ R V+RAE A Y ++DL + ++ +LRK DK +G R
Sbjct: 65 RSDRVEITLHS-RGPVIRAEAAASDPYAALDLAADKLEARLRKQHDKRYTR----RGARR 119
Query: 232 LKFSEVILPLPS----------EDEEDEIEITPQKDDEEELIEE---VVRTKYFDMPPLT 372
L +EV +P DEE + +K E+ E +VR K P+T
Sbjct: 120 LTAAEVADHVPGVATLNGNGYVADEEKAEGVPTKKIGSLEVKGEGPLIVREKTHVASPMT 179
Query: 373 VFEAIDQLEMVDHDFYAFRNEE 438
+ +A+ ++E+V HDFY F + E
Sbjct: 180 LDQALYEMELVGHDFYLFVDSE 201
[235][TOP]
>UniRef100_Q71WR7 Ribosomal subunit interface protein n=9 Tax=Listeria
RepID=Q71WR7_LISMF
Length = 187
Score = 58.5 bits (140), Expect = 2e-07
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNR--LKFSEVILPLPSE 270
V+RAEE + Y SIDL+ ++R++RK K K R KG R +S+V P E
Sbjct: 64 VLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAERDYFAYSDVNGSTPPE 122
Query: 271 DEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+ E + ++ E+VRTK F + P+ EA+ Q+ ++ H FY + + E
Sbjct: 123 ENEGDFDL------------EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAE 166
[236][TOP]
>UniRef100_C6PFL3 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Thermoanaerobacter italicus Ab9 RepID=C6PFL3_9THEO
Length = 181
Score = 58.5 bits (140), Expect = 2e-07
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVI-LPLPSED 273
+ RAEE ++ YGSID V I+R++ K K K NR +E I +PS
Sbjct: 61 IFRAEEVSDDMYGSIDRVVDKIERQILKHKTKLK---------NRFGANESIRFEIPSVY 111
Query: 274 EEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
+E K++EEE E+V+TK F + P++ EAI Q+ ++ H+F+ F N +
Sbjct: 112 QE-------AKEEEEETSFEIVKTKRFPIKPMSAEEAILQMNLLGHNFFVFTNAD 159
[237][TOP]
>UniRef100_C6JE61 Putative uncharacterized protein n=1 Tax=Ruminococcus sp.
5_1_39BFAA RepID=C6JE61_9FIRM
Length = 175
Score = 58.5 bits (140), Expect = 2e-07
Identities = 40/127 (31%), Positives = 67/127 (52%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + ++R+E+ + Y SIDLV +I+R+LRK K+K D K
Sbjct: 48 QKIEVTIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVD-----KQQAAAN 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F + L DE++E++I +RTK F + P+ +A Q+E++ H+F
Sbjct: 102 FQKAYLD-KDYDEDEEVKI--------------IRTKKFGIKPMYPEDACVQMELLGHNF 146
Query: 418 YAFRNEE 438
+ F N E
Sbjct: 147 FVFYNAE 153
[238][TOP]
>UniRef100_C5QQC2 Ribosome-associated inhibitor protein Y n=1 Tax=Staphylococcus
epidermidis M23864:W1 RepID=C5QQC2_STAEP
Length = 191
Score = 58.5 bits (140), Expect = 2e-07
Identities = 36/126 (28%), Positives = 69/126 (54%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKF 240
+ EVT+ K +RAEE + Y IDL+++ ++R++RK K + R +G +
Sbjct: 53 KIEVTIPLK-DVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQEVFV 110
Query: 241 SEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFY 420
+EV E +E+ + D++ ++ E++R+K F + P+ EA+ Q+ ++ HDF+
Sbjct: 111 AEV-----QEATPEEVSGAEEPDNDSDI--EIIRSKQFSLKPMDSEEAVLQMNLLGHDFF 163
Query: 421 AFRNEE 438
F + E
Sbjct: 164 IFTDRE 169
[239][TOP]
>UniRef100_C4E796 SSU ribosomal protein S30P; sigma 54 modulation protein n=1
Tax=Streptosporangium roseum DSM 43021
RepID=C4E796_STRRS
Length = 218
Score = 58.5 bits (140), Expect = 2e-07
Identities = 38/143 (26%), Positives = 75/143 (52%), Gaps = 17/143 (11%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK-ETDHGRHMKGPNRLK 237
R E+T+++ R VRAE A+ + ++D+ ++ +LR++ D+ + HG H P+ +
Sbjct: 55 RVELTIHS-RGPAVRAEATADDRFAALDIALGKLEGRLRRLADRRKIHHGNHCP-PSLAE 112
Query: 238 FS--------EVILPLPSEDEEDEIEITPQKDDEEELIEE--------VVRTKYFDMPPL 369
+ E + P P E+ E + + +++ ++ VVR K P+
Sbjct: 113 LAATALAETLEAVPPRPREEPEVQSDFEADLSEDKTIVPIHMDGDGPLVVREKAHQADPM 172
Query: 370 TVFEAIDQLEMVDHDFYAFRNEE 438
T+ +A+ ++E+V HDFY FR++E
Sbjct: 173 TIDQALLEMELVGHDFYLFRDKE 195
[240][TOP]
>UniRef100_C0VBX3 SSU ribosomal protein S30P n=1 Tax=Xylanimonas cellulosilytica DSM
15894 RepID=C0VBX3_9MICO
Length = 216
Score = 58.5 bits (140), Expect = 2e-07
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Frame = +1
Query: 61 RCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGR-HMKGPNRLK 237
R E+T+ K V+RAE A+ YG++DL + +LR+ +D+ DH R ++ P ++
Sbjct: 55 RVELTVRAKGP-VIRAEAAADDRYGALDLAIDKLIERLRRSRDRRKDHRRTYVTAPVDVR 113
Query: 238 -FSEVILPLPSEDEEDEIEITPQKDDEEELIEE--VVRTKYFDMPPLTVFEAIDQLEMVD 408
+ EV P P E EE + + E +L + V+R K +TV +A+ ++E+V
Sbjct: 114 PYDEVRSPEP-EPEESVPLVVDGEAVEHQLGDSPVVIRQKLHSADAMTVDDAVYEMELVG 172
Query: 409 HDFYAFRNEE 438
HDF+ F ++E
Sbjct: 173 HDFFLFIDKE 182
[241][TOP]
>UniRef100_C0FTS3 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans
DSM 16841 RepID=C0FTS3_9FIRM
Length = 176
Score = 58.5 bits (140), Expect = 2e-07
Identities = 40/127 (31%), Positives = 67/127 (52%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K +R+E+ + Y SIDLV +I+R+L+K + K ++ +
Sbjct: 48 QKVEVTIPMKG-SYIRSEQVSSDMYVSIDLVEEVIERQLKKYRTKLVTKQQNAAAVFKQD 106
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F DE+ E D+EE+ +++RTK FDM P+ +A ++E++ HDF
Sbjct: 107 FL---------DEKSE--------DDEEI--KIIRTKKFDMKPMYPEDACVEMELLGHDF 147
Query: 418 YAFRNEE 438
Y F N E
Sbjct: 148 YVFINAE 154
[242][TOP]
>UniRef100_C0CJV5 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
DSM 10507 RepID=C0CJV5_9FIRM
Length = 175
Score = 58.5 bits (140), Expect = 2e-07
Identities = 42/127 (33%), Positives = 68/127 (53%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K + ++R+E+ + Y SIDLV +I+R+LRK K K D + G +
Sbjct: 48 QKIEVTIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKTKIVD--KEKAGDH--- 101
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
F + + E EEDE++I RTK FD+ P+ +A Q+E++ H+F
Sbjct: 102 FQKAFIEKEYE-EEDEVKIQ--------------RTKKFDIKPMYPEDACVQMELLGHNF 146
Query: 418 YAFRNEE 438
+ F N E
Sbjct: 147 FVFCNAE 153
[243][TOP]
>UniRef100_A3DJE4 Sigma 54 modulation protein / SSU ribosomal protein S30P n=3
Tax=Clostridium thermocellum RepID=A3DJE4_CLOTH
Length = 177
Score = 58.5 bits (140), Expect = 2e-07
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Frame = +1
Query: 94 GVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK--ETDHGRHMKGPNRLKFSEVILPLPS 267
G++RAEE + Y SID V ++R++R+ K K + H ++ N +KF
Sbjct: 59 GLLRAEEDSPDMYASIDKVIDSLERQIRRNKTKLEKKVHDGSLRFEN-IKF--------- 108
Query: 268 EDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
++DE+E P+ EVVRTK F + P+TV EAI Q+ ++ H F+ F N E
Sbjct: 109 --DDDEVEEEPKF--------EVVRTKKFAIKPMTVEEAILQMNLLGHQFFMFSNAE 155
[244][TOP]
>UniRef100_B0MGZ9 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
14662 RepID=B0MGZ9_9FIRM
Length = 176
Score = 58.5 bits (140), Expect = 2e-07
Identities = 37/127 (29%), Positives = 70/127 (55%)
Frame = +1
Query: 58 RRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLK 237
++ EVT+ K H ++RAE+ + Y SIDLV I++R++R+ K + K
Sbjct: 48 QKIEVTIPMKGH-IIRAEQDSADMYVSIDLVIDILERQIRRYKTRLMSK----------K 96
Query: 238 FSEVILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDF 417
+ L D+++++ DE+E+ ++R+K F + P+ V EA Q++++ H+F
Sbjct: 97 YEGAGLKQEFIDKDEDV-------DEDEI--RIIRSKKFAIKPMDVEEACIQMDLLGHNF 147
Query: 418 YAFRNEE 438
+ FRN +
Sbjct: 148 FVFRNAD 154
[245][TOP]
>UniRef100_Q9K6W6 Ribosomal protein S30AE family n=1 Tax=Bacillus halodurans
RepID=Q9K6W6_BACHD
Length = 187
Score = 58.2 bits (139), Expect = 3e-07
Identities = 42/122 (34%), Positives = 67/122 (54%)
Frame = +1
Query: 67 EVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSE 246
EVT+ R ++RAEE Y +IDLV ++R++RK K K R +G + F
Sbjct: 53 EVTIPMSRL-LLRAEEKHSDMYAAIDLVIEKLERQIRKHKTKVNRKFRQ-EGSLKYMFKN 110
Query: 247 VILPLPSEDEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAF 426
+ P+ EE +E +E++L +VVR K F++ P+ EAI Q++M+ H+F+ F
Sbjct: 111 DLEPMDGMREEILLE------EEDDL--QVVRKKRFNLKPMDTEEAILQMDMLGHNFFVF 162
Query: 427 RN 432
N
Sbjct: 163 SN 164
[246][TOP]
>UniRef100_C3PEM1 Ribosome-associated protein n=1 Tax=Corynebacterium aurimucosum
ATCC 700975 RepID=C3PEM1_CORA7
Length = 214
Score = 58.2 bits (139), Expect = 3e-07
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Frame = +1
Query: 43 RGPRTRRCEVTLYTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETD---HGRH 213
R R ++T K H + RAE ++ Y +++ ++R LRK+K + + R
Sbjct: 55 RESEAERLQITATGKGH-IARAEAKEDSFYAALETALGKMERSLRKVKVRRENVKSGHRA 113
Query: 214 MKGPNRLKFSEVILPLPSEDEEDEIEITPQKDDEEELIE-EVVRTKYFDMPPLTVFEAID 390
KG ++ V ++ ++E I P + E++ +VVR K P++V +A+
Sbjct: 114 QKGTGQIAAELVAEAEAAKPAKEERYIDPYAETVEDVRPGQVVRFKEHPATPMSVDDALS 173
Query: 391 QLEMVDHDFYAFRNEE 438
++E+V HDFY F NEE
Sbjct: 174 EMELVGHDFYLFINEE 189
[247][TOP]
>UniRef100_B1YLH2 Sigma 54 modulation protein/ribosomal protein S30EA n=1
Tax=Exiguobacterium sibiricum 255-15 RepID=B1YLH2_EXIS2
Length = 187
Score = 58.2 bits (139), Expect = 3e-07
Identities = 40/114 (35%), Positives = 59/114 (51%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++RAE+ Y +IDLV ++R++RK K K GR G F + E
Sbjct: 63 LLRAEDVNGDMYAAIDLVVDKLERQIRKHKTKINRRGRAKDGGIGEYFKTL--------E 114
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
E E ++DE EL E+VRTK F + P+ EAI Q++M+ H F+ F + E
Sbjct: 115 GPEAEAPVYEEDEAEL--ELVRTKRFTLKPMDTEEAILQMDMLGHTFFVFSDAE 166
[248][TOP]
>UniRef100_A0Q2Y0 Ribosomal subunit interface protein n=1 Tax=Clostridium novyi NT
RepID=A0Q2Y0_CLONN
Length = 178
Score = 58.2 bits (139), Expect = 3e-07
Identities = 35/114 (30%), Positives = 62/114 (54%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
++RAE+ Y +ID+V ++R++RK K K + K + LKF + +P
Sbjct: 60 ILRAEDSNSDMYAAIDIVLEKLERQIRKQKTKL----QRRKHGDALKFQFIPEYVP---- 111
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
KDDE+ + ++V+TK F + P++ EA+ Q+E++ H+F+ F N E
Sbjct: 112 ---------KDDEDNIESKIVKTKRFAIKPMSREEAVLQMELLGHNFFVFTNAE 156
[249][TOP]
>UniRef100_C5VNV1 Ribosomal subunit interface protein n=1 Tax=Clostridium botulinum D
str. 1873 RepID=C5VNV1_CLOBO
Length = 178
Score = 58.2 bits (139), Expect = 3e-07
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDK--ETDHGRHMKGPNRLKFSEVILPLPSE 270
++RAEE Y +IDLV ++R++RK K K + HG + LKF + +P
Sbjct: 60 ILRAEEANNDMYAAIDLVLEKLERQIRKQKTKLEKRKHG------DALKFQFIPEYIP-- 111
Query: 271 DEEDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRNEE 438
KD E+ + ++V+TK F + P++ EA+ Q+E++ H+F+ FRN +
Sbjct: 112 -----------KDAEDNVESKIVKTKKFAVKPMSNEEAVLQMELLGHNFFVFRNSD 156
[250][TOP]
>UniRef100_B2TK14 Ribosome-associated protein Y n=3 Tax=Clostridium botulinum
RepID=B2TK14_CLOBB
Length = 177
Score = 58.2 bits (139), Expect = 3e-07
Identities = 37/112 (33%), Positives = 63/112 (56%)
Frame = +1
Query: 97 VVRAEEHAETTYGSIDLVSSIIQRKLRKIKDKETDHGRHMKGPNRLKFSEVILPLPSEDE 276
V+R EE E Y +IDLV+ ++R++RK K K + K LKF E++
Sbjct: 60 VLRGEEANEDMYRAIDLVAEKLERQIRKQKTKLS-----RKKSGSLKFGEIV-------- 106
Query: 277 EDEIEITPQKDDEEELIEEVVRTKYFDMPPLTVFEAIDQLEMVDHDFYAFRN 432
+++P DEEE ++V+ K F + P+ + EAI Q+E+V H+F+ +++
Sbjct: 107 ----DLSPVAVDEEEA--KLVKRKRFGVKPMDIDEAILQMELVGHNFFVYQD 152