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[1][TOP]
>UniRef100_Q1SN01 High mobility group proteins HMG-I and HMG-Y; Linker histone,
N-terminal n=1 Tax=Medicago truncatula
RepID=Q1SN01_MEDTR
Length = 422
Score = 224 bits (570), Expect = 6e-57
Identities = 134/214 (62%), Positives = 149/214 (69%), Gaps = 9/214 (4%)
Frame = +2
Query: 2 FVSLDTTTATATVPPPPTTTTTTVDPVRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAG 181
FVSLD PPPPTT V V+R GRGRPPGTFRSK++K KPKSVSN G
Sbjct: 142 FVSLD--------PPPPTTAVEPVLSVKR-GRGRPPGTFRSKSIK------KPKSVSN-G 185
Query: 182 FKRRPGRPPKIQSQQPTVIPFAASILPDHHQPTLS-SARSTRPRGRPNKYADDDALVVAP 358
KRRPGRPPK QS TVIPFAA+ P + S RSTRPRGRP KY+D + A
Sbjct: 186 LKRRPGRPPKTQSHPTTVIPFAAAPAPSVVSDEANVSVRSTRPRGRPKKYSDT-VVPGAG 244
Query: 359 ATK--------AVARPNNSSRRPVGRPKGSKAAKKLNDEDLRKKLEHFQSKIKESLDVLK 514
AT+ V RP N S RP+GRPKG+K K +N EDLR+KLEHFQSK+KESLD+LK
Sbjct: 245 ATRRGRPKKLAVVGRPKNPSGRPIGRPKGAKGKKFVN-EDLRRKLEHFQSKVKESLDILK 303
Query: 515 PYFDKESPVTAVAAIQELEMLATLDLKAPLRDET 616
P FD +SP TAVAAIQELEMLATLDLKAPLRDET
Sbjct: 304 PLFDHQSPATAVAAIQELEMLATLDLKAPLRDET 337
[2][TOP]
>UniRef100_Q93YH8 HMG I/Y like protein n=1 Tax=Glycine max RepID=Q93YH8_SOYBN
Length = 413
Score = 191 bits (485), Expect = 4e-47
Identities = 119/210 (56%), Positives = 134/210 (63%), Gaps = 36/210 (17%)
Frame = +2
Query: 95 RGRPPGTFRSKTLKSPGRPPKPKSVS--NAGFKRRPGRPPKIQSQQPTVIPFAASILPDH 268
RGRPPGT RSK K PGRPPKPKSVS ++G KRRPGRPPK +S VIPFAA + P
Sbjct: 171 RGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAESNV-NVIPFAAPVAPGL 229
Query: 269 H--QPTLSSAR----STRPRGRPNKY---ADDDALVVA---------------------P 358
QP + +A S RPRGRP K A AL P
Sbjct: 230 PTVQPIVPTASVPNGSPRPRGRPKKIVAGAGAPALSSVGGAPRGRGRPRGVLPLVRPGRP 289
Query: 359 ATKAVARPNNSSRRPVGRPKGSKAAK----KLNDEDLRKKLEHFQSKIKESLDVLKPYFD 526
AV RP N +RRPVGRPKGS AA K ++DLR+KLEHFQSK+KESL LKPYF+
Sbjct: 290 QKLAVGRPKNPARRPVGRPKGSTAAAITAHKAANDDLRRKLEHFQSKVKESLGTLKPYFN 349
Query: 527 KESPVTAVAAIQELEMLATLDLKAPLRDET 616
ESPVTA+AAIQELE+L+TLDLKAPLRDET
Sbjct: 350 HESPVTAIAAIQELEVLSTLDLKAPLRDET 379
[3][TOP]
>UniRef100_A9P7V9 High mobility group family n=1 Tax=Populus trichocarpa
RepID=A9P7V9_POPTR
Length = 478
Score = 114 bits (285), Expect = 6e-24
Identities = 86/225 (38%), Positives = 118/225 (52%), Gaps = 36/225 (16%)
Frame = +2
Query: 47 PPTTTTTTVDPVR-RRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQ 223
P T P+ +G+GRPP T + KSPGRP KPKS+ +A K+ PGRPPK Q +
Sbjct: 215 PKKVAVTEAGPLAVNKGKGRPPKTGPLGSKKSPGRPRKPKSLVDA--KKGPGRPPKNQLK 272
Query: 224 QPTV-----IPFAASILPDHHQPTLSSARSTRPRGRPNKYADDDALVVAPATKAVA---- 376
TV P A +I D + + S RPRGRP K A AL A V
Sbjct: 273 PVTVPYAVAAPTATAIATD--AAAMFNVGSPRPRGRPRKGA---ALAAAGVGAVVVQAKR 327
Query: 377 -------------RPNNSSRRPVGRPKGS-------------KAAKKLNDEDLRKKLEHF 478
+P SS RPVGRP+ + +A +L+ DL++KLE F
Sbjct: 328 PGRPPKLPVIMKPKPKKSSGRPVGRPRKNANAPWAITRASEPQAQAELHG-DLKRKLEFF 386
Query: 479 QSKIKESLDVLKPYFDKESPVTAVAAIQELEMLATLDLKAPLRDE 613
QS++K+++ VLKP+ + ++AVAAIQELE LA++D+ P R+E
Sbjct: 387 QSRVKQAIGVLKPHL-TSATISAVAAIQELEGLASMDINVPWREE 430
[4][TOP]
>UniRef100_A5BLU3 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5BLU3_VITVI
Length = 355
Score = 101 bits (252), Expect = 4e-20
Identities = 88/226 (38%), Positives = 112/226 (49%), Gaps = 34/226 (15%)
Frame = +2
Query: 38 VPPPPTTTTTTV-------DPVRRRGRGRPPGTFRSKTLKSPG-RPPKPKSVSNAGFKRR 193
+P PT+ + V V +RG GRPP KS G R P+PKS+ G KRR
Sbjct: 139 IPVQPTSESVLVAVGLVDGPVVPKRGPGRPP--------KSGGVRGPRPKSLD--GPKRR 188
Query: 194 PGRPPKIQSQQPTVIPFAASILPDHHQPTLSSAR---STRPRGRPNKYADDDALVVA--- 355
PGRPPK +Q VIP +P T + S RPRGRP K A V
Sbjct: 189 PGRPPK--AQLGGVIPGG---VPRERPRTAGVTKVKVSGRPRGRPPKILTVGAGVGGGLS 243
Query: 356 -------PATKAVARPNNSSRRPVGRPKGSKA-------------AKKLNDEDLRKKLEH 475
P RP + RPVGRP+ A A+ +N EDL++KLEH
Sbjct: 244 VKRRGRPPKADGPKRPKKLTGRPVGRPRKKLATGEILPAASEQPVAEWMNYEDLKQKLEH 303
Query: 476 FQSKIKESLDVLKPYFDKESPVTAVAAIQELEMLATLDLKAPLRDE 613
Q KIK S+ VL+ F E+ V+A++A+QELE LAT+D+ APL E
Sbjct: 304 IQGKIKLSVGVLRTQF-SENNVSAMSALQELEDLATMDISAPLNIE 348
[5][TOP]
>UniRef100_B9T8C7 Histone h1/h5, putative n=1 Tax=Ricinus communis RepID=B9T8C7_RICCO
Length = 435
Score = 92.0 bits (227), Expect = 3e-17
Identities = 77/221 (34%), Positives = 100/221 (45%), Gaps = 42/221 (19%)
Frame = +2
Query: 32 ATVPPPPTTTTTTVDPVRRRGRGRPP-------------GTFRSKTLKSPGRPPKPKSVS 172
ATV PP + +RGRGRP G R + KS GRP K KSV
Sbjct: 223 ATVIQPPNVGQPQMGV--KRGRGRPKKVAGGGAAAAVLGGKRRGRPPKSAGRPKKLKSVG 280
Query: 173 NAGFKRRPGRPPKIQSQQPTVIPFAASILPDHHQPTLSSARSTRPRGRPNKYADDDAL-- 346
G K+ P R PK V+P+A ++A + RPRGRP K A A
Sbjct: 281 ANGVKKGPKRLPK-----SVVVPYATGA---------AAAVTARPRGRPKKGAAPAAAPG 326
Query: 347 ----------VVAPATKAVARPN-------NSSRRPVGRPK-------GSKAAKKLNDE- 451
VV P +A P N +RPVGRPK + A +L E
Sbjct: 327 VGGVVGIGGAVVVPGKRAGRPPKVVGGVVVNPKKRPVGRPKKNDNVSWAAAQASQLQSEA 386
Query: 452 --DLRKKLEHFQSKIKESLDVLKPYFDKESPVTAVAAIQEL 568
DL+ K E FQSK+++++ VL+P E+P++ VAAIQEL
Sbjct: 387 YGDLKMKFEFFQSKVRQAVGVLRPQLTNETPISVVAAIQEL 427
[6][TOP]
>UniRef100_Q40451 DNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q40451_TOBAC
Length = 546
Score = 74.3 bits (181), Expect = 7e-12
Identities = 65/227 (28%), Positives = 94/227 (41%), Gaps = 49/227 (21%)
Frame = +2
Query: 47 PPTTTTTTVDPVRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAG--------------- 181
PP + T P G GR ++ GRP K +V+ A
Sbjct: 315 PPKSVTVNAAPGSAMGSGRRGRPRKNSVPGRRGRPRKNAAVAAANGGANVANIPSVGANV 374
Query: 182 -------------FKRRPGRPPKIQSQQP-----TVIPFAASILPDHHQPTLSSARST-- 301
+R GRPP+ T +P AA+ ++ + T
Sbjct: 375 TNVPAGGVPGAITTPKRRGRPPRSSGPPAATVGVTDVPIAAAFDTENLPNAVGGGGVTNN 434
Query: 302 -------RPRGRPNKYADDDALVVAPATKAVARPNNSSRRPVGRPKGSKAAKKLND---- 448
+ RGRP K + A A V RP S +P+GRP+ + + ++D
Sbjct: 435 GALPPLGKRRGRPPK-----SYGAAAAAPTVKRPRKLSGKPLGRPRKNVTSPAVSDPKLV 489
Query: 449 ---EDLRKKLEHFQSKIKESLDVLKPYFDKESPVTAVAAIQELEMLA 580
E+L+ KLEH QS+IKE+ + LKP + ESP A+AA+QELE LA
Sbjct: 490 VAYEELKGKLEHMQSRIKEAANALKPCLNAESPAIALAALQELEELA 536
[7][TOP]
>UniRef100_B9I2G1 High mobility group family n=1 Tax=Populus trichocarpa
RepID=B9I2G1_POPTR
Length = 369
Score = 74.3 bits (181), Expect = 7e-12
Identities = 52/138 (37%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Frame = +2
Query: 47 PPTTTTTTVDP-VRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQ 223
P T P V ++GRGRPP + + KSPGRP KPKS+ G K+ PGRPPK Q
Sbjct: 223 PKKMVVTEAGPLVVKKGRGRPPNSGPLGSKKSPGRPRKPKSL--VGAKKGPGRPPKNQ-L 279
Query: 224 QPTVIPFAASILPDHHQPTLSSARSTRPRGRPNKYA--DDDALVVAPATKAVAR------ 379
+P +P+A + + + S +PRGRP K A + VV K R
Sbjct: 280 KPVTVPYAVASPTATDAAAVFNVASPKPRGRPRKGAAPTNAGAVVMVQAKPPGRPAKVPG 339
Query: 380 -----PNNSSRRPVGRPK 418
P +S RPVGRP+
Sbjct: 340 VMKLKPKKNSGRPVGRPR 357
[8][TOP]
>UniRef100_Q43568 DNA-binding protein (Fragment) n=1 Tax=Nicotiana tabacum
RepID=Q43568_TOBAC
Length = 380
Score = 71.6 bits (174), Expect = 5e-11
Identities = 57/177 (32%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Frame = +2
Query: 98 GRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQQPTVIPFAASILPDHHQP 277
G PG T K GRPP+ P + T +P AA+ ++
Sbjct: 214 GGVPGAIT--TPKGRGRPPRSSG-------------PPAATVGVTDVPIAAAFDTENLPN 258
Query: 278 TLSSARST---------RPRGRPNKYADDDALVVAPATKAVARPNNSSRRPVGRPKGSKA 430
+ T + RGRP K + A A V RP S +P+GRP+ +
Sbjct: 259 AVGGGGVTNNGALPPLGKRRGRPPK-----SYGAAAAAPTVKRPRKLSGKPLGRPRKNVT 313
Query: 431 AKKLND-------EDLRKKLEHFQSKIKESLDVLKPYFDKESPVTAVAAIQELEMLA 580
+ ++D E+L+ KLEH QS+IKE+ + LKP + ESP A+AA+QELE LA
Sbjct: 314 SPAVSDPKLVVAYEELKGKLEHMQSRIKEAANALKPCLNAESPAIALAALQELEELA 370
[9][TOP]
>UniRef100_Q9ZRM3 HMR1 protein n=1 Tax=Antirrhinum majus RepID=Q9ZRM3_ANTMA
Length = 400
Score = 70.5 bits (171), Expect = 1e-10
Identities = 69/200 (34%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Frame = +2
Query: 83 RRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNA------GFKRRPGRPPKIQS-------Q 223
R RGRGRPP T + + P + + A G R GRPPK +
Sbjct: 199 RGRGRGRPPKTAVAPPAAAAAAVPGAPAAAVAPAAQVKGPGRPRGRPPKPINVVEGGAVA 258
Query: 224 QPTVIPFAASILPDHHQPTLSSARSTRPRGRPNKYADDDA-----LVVAPATKAVARPNN 388
P +P A +LP ++ R RGRP K + VV P T P
Sbjct: 259 APVAVP-AGGVLPVAGGSVVAGVAPKR-RGRPPKAGGEAKKPRLQTVVKPKT-----PRK 311
Query: 389 SSRRPVGRPKGSKAA--KKLNDE-------DLRKKLEHFQSKIKESLDVLKPYFDKESPV 541
S +P+GRPK + AA ++ D DL+ KLE+ QS++K + +V+KP E
Sbjct: 312 LSGKPLGRPKKNAAAAVSQVADTQLLVAYLDLKGKLENLQSRVKLAANVIKPCLTTED-- 369
Query: 542 TAVAAIQELEMLATLDLKAP 601
AV A QELEMLATL+ AP
Sbjct: 370 -AVNAFQELEMLATLNTTAP 388
[10][TOP]
>UniRef100_Q9LSK7 Genomic DNA, chromosome 3, P1 clone: MBG14 n=1 Tax=Arabidopsis
thaliana RepID=Q9LSK7_ARATH
Length = 480
Score = 67.0 bits (162), Expect = 1e-09
Identities = 62/218 (28%), Positives = 89/218 (40%), Gaps = 34/218 (15%)
Frame = +2
Query: 50 PTTTTTTVDPVRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQS--- 220
P T V +RG GRP R +P P ++ AG +R GRPP ++
Sbjct: 221 PVPVPTPVTESAKRGPGRP----RKNGSAAPATAPIVQASVMAGIMKRRGRPPGRRAAGR 276
Query: 221 -QQPTVIPFAASILPDHHQPTLSSARSTRPRGRPNKYADDDALV------------VAPA 361
++P + AS+ P A R RGRP + D ++V VAP
Sbjct: 277 QRKPKSVSSTASVYP-------YVANGARRRGRPRRVVDPSSIVSVAPVGGENVAAVAPG 329
Query: 362 TKA---------------VARPNNSSRRPVGRPK--GSKAAKKLNDE-DLRKKLEHFQSK 487
K + +P RPVGRP+ G+ D +L+KK + FQ K
Sbjct: 330 MKRGRGRPPKIGGVISRLIMKPKRGRGRPVGRPRKIGTSVTTGTQDSGELKKKFDIFQEK 389
Query: 488 IKESLDVLKPYFDKESPVTAVAAIQELEMLATLDLKAP 601
+KE + VLK E+ V AI++LE L + P
Sbjct: 390 VKEIVKVLKDGVTSENQ-AVVQAIKDLEALTVTETVEP 426
[11][TOP]
>UniRef100_A0T2P9 DNA binding protein n=1 Tax=Brassica rapa RepID=A0T2P9_BRACM
Length = 185
Score = 58.5 bits (140), Expect = 4e-07
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 16/196 (8%)
Frame = +2
Query: 41 PPPPTTTTTTVDPVRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQS 220
PP P + + ++RGRGRP PKS S+ +P R P +
Sbjct: 15 PPAPADASPAANDSQKRGRGRP-----------------PKSKSDGAVSAQPARKPSGRP 57
Query: 221 QQ-PTVIPFAASILPDHHQPTLSS---------ARSTRPRGRPNKYADDDALVVA----- 355
++ V+P AA + +P SS +R RGRP K DD A A
Sbjct: 58 RRNAAVVPAAAVVKSGRGRPKRSSTVAATESQVTPGSRKRGRPKK--DDVAAAPAKKRGR 115
Query: 356 -PATKAVARPNNSSRRPVGRPKGSKAAKKLNDEDLRKKLEHFQSKIKESLDVLKPYFDKE 532
P T+ VA+ S+R + + + + +KK Q K+K++ D LK
Sbjct: 116 KPKTEQVAKQRTSNRTRKATTEATTGHGAADPREYKKKAALLQKKVKQAADKLK------ 169
Query: 533 SPVTAVAAIQELEMLA 580
AV+AI+E++ +A
Sbjct: 170 ---IAVSAIEEVQKIA 182
[12][TOP]
>UniRef100_A7PH49 Chromosome chr17 scaffold_16, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PH49_VITVI
Length = 284
Score = 55.8 bits (133), Expect = 3e-06
Identities = 58/171 (33%), Positives = 69/171 (40%), Gaps = 38/171 (22%)
Frame = +2
Query: 86 RRGRGRPPGTFRSKTLKSPGRPPKPKSVSNA------------GFKRRPGRPPKIQSQQP 229
+RGRGRPP P P +P S S G KRRPGRPPK +Q
Sbjct: 128 KRGRGRPP---------KPKIPVQPTSESVLVAVGLVDGPSLDGPKRRPGRPPK--AQLG 176
Query: 230 TVIPFAASILPDHHQPTLSSAR---STRPRGRPNKYADDDALVVA----------PATKA 370
VIP +P T + S RPRGRP K A V P
Sbjct: 177 GVIPGG---VPRERPRTAGVTKVKVSGRPRGRPPKILTVGAGVGGGLSVKRRGRPPKADG 233
Query: 371 VARPNNSSRRPVGRPKGSKA-------------AKKLNDEDLRKKLEHFQS 484
RP + RPVGRP+ A A+ +N EDL++KLEH S
Sbjct: 234 PKRPKKLTGRPVGRPRKKLATGEILPAASEQPVAEWMNYEDLKQKLEHIVS 284
[13][TOP]
>UniRef100_Q9LP61 T1N15.25 n=1 Tax=Arabidopsis thaliana RepID=Q9LP61_ARATH
Length = 594
Score = 55.5 bits (132), Expect = 4e-06
Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 15/199 (7%)
Frame = +2
Query: 29 TATVPPPPTTTTTTVDPVRRRGR---GRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPG 199
T+ P + + V+ V+RRGR GR G R + S P V+N G +RR G
Sbjct: 367 TSPTVKPAASVSGGVETVKRRGRPPSGRAAGRERKPIVVSAPASVFPY-VANGGVRRR-G 424
Query: 200 RPPKIQSQQPTVIPFAASILPDHHQPTLSS------ARSTRPRGRPNKYADDDALVVAPA 361
RP ++ + A+S+ P PT A R RGRP K + P
Sbjct: 425 RPKRVDAGG------ASSVAPPPPPPTNVESGGEEVAVKKRGRGRPPKIGGVIRKPMKPM 478
Query: 362 TKAVARPNNSSRRPVGRPK------GSKAAKKLNDEDLRKKLEHFQSKIKESLDVLKPYF 523
++ AR +PVGRP+ G+ + + +L+KK E FQ++ K+ + VLK
Sbjct: 479 -RSFARTG----KPVGRPRKNAVSVGASGRQDGDYGELKKKFELFQARAKDIVIVLKSEI 533
Query: 524 DKESPVTAVAAIQELEMLA 580
V AIQ+LE +A
Sbjct: 534 GGSGNQAVVQAIQDLEGIA 552
[14][TOP]
>UniRef100_Q4V3D1 At1g48620 n=1 Tax=Arabidopsis thaliana RepID=Q4V3D1_ARATH
Length = 479
Score = 55.5 bits (132), Expect = 4e-06
Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 15/199 (7%)
Frame = +2
Query: 29 TATVPPPPTTTTTTVDPVRRRGR---GRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPG 199
T+ P + + V+ V+RRGR GR G R + S P V+N G +RR G
Sbjct: 252 TSPTVKPAASVSGGVETVKRRGRPPSGRAAGRERKPIVVSAPASVFPY-VANGGVRRR-G 309
Query: 200 RPPKIQSQQPTVIPFAASILPDHHQPTLSS------ARSTRPRGRPNKYADDDALVVAPA 361
RP ++ + A+S+ P PT A R RGRP K + P
Sbjct: 310 RPKRVDAGG------ASSVAPPPPPPTNVESGGEEVAVKKRGRGRPPKIGGVIRKPMKPM 363
Query: 362 TKAVARPNNSSRRPVGRPK------GSKAAKKLNDEDLRKKLEHFQSKIKESLDVLKPYF 523
++ AR +PVGRP+ G+ + + +L+KK E FQ++ K+ + VLK
Sbjct: 364 -RSFARTG----KPVGRPRKNAVSVGASGRQDGDYGELKKKFELFQARAKDIVIVLKSEI 418
Query: 524 DKESPVTAVAAIQELEMLA 580
V AIQ+LE +A
Sbjct: 419 GGSGNQAVVQAIQDLEGIA 437
[15][TOP]
>UniRef100_B6SD81 High mobility group protein A2 n=1 Tax=Physcomitrella patens
RepID=B6SD81_PHYPA
Length = 254
Score = 54.3 bits (129), Expect = 8e-06
Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 24/145 (16%)
Frame = +2
Query: 86 RRGRGRPPGTFRSKTLKSP-------------GRPPKPKSVSNAGF-----------KRR 193
+RGRGRPP KSP GRPPK K+ S A +R
Sbjct: 83 KRGRGRPPKNKNDSPAKSPATESPAAPGSKKRGRPPKLKTSSAASEGEETGKESPSEPKR 142
Query: 194 PGRPPKIQSQQPTVIPFAASILPDHHQPTLSSARSTRPRGRPNKYADDDALVVAPATKAV 373
GRPPK ++ AS D + LSS + + RGRP K + A V A K
Sbjct: 143 RGRPPKTKTDGSKESVSKASEEDDSEKKDLSSPITPKRRGRPPKSKPEAAEEVEVAKKGK 202
Query: 374 ARPNNSSRRPVGRPKGSKAAKKLND 448
++ + GRP +KA + D
Sbjct: 203 TEEGGATPKRRGRPPKAKAESEAED 227