BB933217 ( RCC05455 )

[UP]


[1][TOP]
>UniRef100_Q1SN01 High mobility group proteins HMG-I and HMG-Y; Linker histone,
           N-terminal n=1 Tax=Medicago truncatula
           RepID=Q1SN01_MEDTR
          Length = 422

 Score =  121 bits (304), Expect = 2e-26
 Identities = 77/131 (58%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
 Frame = +1

Query: 1   RGRPPKPKPQQQQQQQNVLFVSLDTTTATATVPPPPTTTTTTVDPVRRRGRGRPPGTFRS 180
           RGRPPK KP      Q V FVSLD        PPPPTT    V  V+R GRGRPPGTFRS
Sbjct: 124 RGRPPKHKPILIPNAQPV-FVSLD--------PPPPTTAVEPVLSVKR-GRGRPPGTFRS 173

Query: 181 KTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQQPTVIPFAASILPDHHQPTLS-SARST 357
           K++K      KPKSVSN G KRRPGRPPK QS   TVIPFAA+  P       + S RST
Sbjct: 174 KSIK------KPKSVSN-GLKRRPGRPPKTQSHPTTVIPFAAAPAPSVVSDEANVSVRST 226

Query: 358 RPRGRPNKYAD 390
           RPRGRP KY+D
Sbjct: 227 RPRGRPKKYSD 237

[2][TOP]
>UniRef100_Q93YH8 HMG I/Y like protein n=1 Tax=Glycine max RepID=Q93YH8_SOYBN
          Length = 413

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 64/142 (45%), Positives = 75/142 (52%), Gaps = 15/142 (10%)
 Frame = +1

Query: 1   RGRPPKPKPQQQQQQQNVLFVSLDTTTATATVPPPPTTTTTTVDPVRRRG-------RGR 159
           RGRPPK K  Q   +     ++L+   A  +    P        PV           RGR
Sbjct: 115 RGRPPKLK-SQPNTELTWPALALNDNPALQSAKRGPGRPKKIAGPVGVSPGPMVPGRRGR 173

Query: 160 PPGTFRSKTLKSPGRPPKPKSVS--NAGFKRRPGRPPKIQSQQPTVIPFAASILP--DHH 327
           PPGT RSK  K PGRPPKPKSVS  ++G KRRPGRPPK +S    VIPFAA + P     
Sbjct: 174 PPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAES-NVNVIPFAAPVAPGLPTV 232

Query: 328 QPTLSSAR----STRPRGRPNK 381
           QP + +A     S RPRGRP K
Sbjct: 233 QPIVPTASVPNGSPRPRGRPKK 254

[3][TOP]
>UniRef100_B9I2G1 High mobility group family n=1 Tax=Populus trichocarpa
           RepID=B9I2G1_POPTR
          Length = 369

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 56/160 (35%), Positives = 71/160 (44%), Gaps = 31/160 (19%)
 Frame = +1

Query: 1   RGRPPKPK----------------PQQ--------QQQQQNVLFVSL------DTTTATA 90
           RGRPPK K                PQ           Q Q+ L VS        T+T   
Sbjct: 159 RGRPPKTKANGLPPTPASVLANGQPQTGLGSHVSVTAQTQSQLVVSSVGTPVDSTSTGRK 218

Query: 91  TVPPPPTTTTTTVDP-VRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPK 267
               P     T   P V ++GRGRPP +    + KSPGRP KPKS+   G K+ PGRPPK
Sbjct: 219 GRGRPKKMVVTEAGPLVVKKGRGRPPNSGPLGSKKSPGRPRKPKSL--VGAKKGPGRPPK 276

Query: 268 IQSQQPTVIPFAASILPDHHQPTLSSARSTRPRGRPNKYA 387
            Q  +P  +P+A +         + +  S +PRGRP K A
Sbjct: 277 NQ-LKPVTVPYAVASPTATDAAAVFNVASPKPRGRPRKGA 315

[4][TOP]
>UniRef100_A9P7V9 High mobility group family n=1 Tax=Populus trichocarpa
           RepID=A9P7V9_POPTR
          Length = 478

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 58/160 (36%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
 Frame = +1

Query: 1   RGRPPKPKPQ----------QQQQQQNVLFVSLDTTTATATVPPPPTTTTTTVDPVRRR- 147
           RGRPPK K               Q Q  L +++  T    +V  P   T++TV   R R 
Sbjct: 156 RGRPPKAKLNGLTPTPAPVLANGQAQTGLGLNVGVTAQPLSVGFPIDPTSSTVKKGRGRP 215

Query: 148 ---------------GRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQQ 282
                          G+GRPP T    + KSPGRP KPKS+ +A  K+ PGRPPK Q + 
Sbjct: 216 KKVAVTEAGPLAVNKGKGRPPKTGPLGSKKSPGRPRKPKSLVDA--KKGPGRPPKNQLKP 273

Query: 283 PTV-----IPFAASILPDHHQPTLSSARSTRPRGRPNKYA 387
            TV      P A +I  D     + +  S RPRGRP K A
Sbjct: 274 VTVPYAVAAPTATAIATD--AAAMFNVGSPRPRGRPRKGA 311

[5][TOP]
>UniRef100_B9T8C7 Histone h1/h5, putative n=1 Tax=Ricinus communis RepID=B9T8C7_RICCO
          Length = 435

 Score = 63.9 bits (154), Expect = 5e-09
 Identities = 52/156 (33%), Positives = 65/156 (41%), Gaps = 27/156 (17%)
 Frame = +1

Query: 1   RGRPPKPKPQ------QQQQQQNVLFVSLDTTTATATVPPPPTTTTTTVDPVR------- 141
           RGRPPKPKP+      Q   Q N   V +    + +T P       T + P         
Sbjct: 178 RGRPPKPKPEVVPSSIQPISQPNAASVMVPVGLSISTQPINSAPAATVIQPPNVGQPQMG 237

Query: 142 -RRGRGRPP-------------GTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQ 279
            +RGRGRP              G  R +  KS GRP K KSV   G K+ P R PK    
Sbjct: 238 VKRGRGRPKKVAGGGAAAAVLGGKRRGRPPKSAGRPKKLKSVGANGVKKGPKRLPK---- 293

Query: 280 QPTVIPFAASILPDHHQPTLSSARSTRPRGRPNKYA 387
              V+P+A            ++A + RPRGRP K A
Sbjct: 294 -SVVVPYATG---------AAAAVTARPRGRPKKGA 319

[6][TOP]
>UniRef100_A5BLU3 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5BLU3_VITVI
          Length = 355

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 53/131 (40%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
 Frame = +1

Query: 1   RGRPPKPKPQQQQQQQNVLFVSLDTTTATATVPPPPTTTTTTVDPVRRRGRGRPPGTFRS 180
           RGRPPKPK   Q   ++VL        A   V  P          V +RG GRPP     
Sbjct: 131 RGRPPKPKIPVQPTSESVL-------VAVGLVDGPV---------VPKRGPGRPP----- 169

Query: 181 KTLKSPG-RPPKPKSVSNAGFKRRPGRPPKIQSQQPTVIPFAASILPDHHQPTLSSAR-- 351
              KS G R P+PKS+   G KRRPGRPPK  +Q   VIP     +P     T    +  
Sbjct: 170 ---KSGGVRGPRPKSLD--GPKRRPGRPPK--AQLGGVIPGG---VPRERPRTAGVTKVK 219

Query: 352 -STRPRGRPNK 381
            S RPRGRP K
Sbjct: 220 VSGRPRGRPPK 230

[7][TOP]
>UniRef100_Q9LSK7 Genomic DNA, chromosome 3, P1 clone: MBG14 n=1 Tax=Arabidopsis
           thaliana RepID=Q9LSK7_ARATH
          Length = 480

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 45/147 (30%), Positives = 60/147 (40%), Gaps = 12/147 (8%)
 Frame = +1

Query: 1   RGRPPKPKPQQQQQQQNVLFVSLDTTTATATVPP--------PPTTTTTTVDPVRRRGRG 156
           RGRPPKPKP+ Q Q    L     T    A   P         P    T V    +RG G
Sbjct: 181 RGRPPKPKPESQPQPLQQL---PPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPG 237

Query: 157 RPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQS----QQPTVIPFAASILPDH 324
           RP    R     +P   P  ++   AG  +R GRPP  ++    ++P  +   AS+ P  
Sbjct: 238 RP----RKNGSAAPATAPIVQASVMAGIMKRRGRPPGRRAAGRQRKPKSVSSTASVYP-- 291

Query: 325 HQPTLSSARSTRPRGRPNKYADDDALV 405
                  A   R RGRP +  D  ++V
Sbjct: 292 -----YVANGARRRGRPRRVVDPSSIV 313