[UP]
[1][TOP]
>UniRef100_Q1SN01 High mobility group proteins HMG-I and HMG-Y; Linker histone,
N-terminal n=1 Tax=Medicago truncatula
RepID=Q1SN01_MEDTR
Length = 422
Score = 213 bits (541), Expect = 1e-53
Identities = 124/196 (63%), Positives = 140/196 (71%), Gaps = 11/196 (5%)
Frame = +2
Query: 53 TTTVDPVR--RRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQQPTV 226
TT V+PV +RGRGRPPGTFRSK++K KPKSVSN G KRRPGRPPK QS TV
Sbjct: 151 TTAVEPVLSVKRGRGRPPGTFRSKSIK------KPKSVSN-GLKRRPGRPPKTQSHPTTV 203
Query: 227 IPFAASILPDHHQPTLS-SARSTRPRGRPKKYADDDALVAAPATK--------AVARPNN 379
IPFAA+ P + S RSTRPRGRPKKY+D + A AT+ V RP N
Sbjct: 204 IPFAAAPAPSVVSDEANVSVRSTRPRGRPKKYSDT-VVPGAGATRRGRPKKLAVVGRPKN 262
Query: 380 SSRRPLGRPKGSKAAKKLNDEDLRXXLEHFQSKIKESLDVLKPYFDKESPVTAVAAVQEL 559
S RP+GRPKG+K K +N EDLR LEHFQSK+KESLD+LKP FD +SP TAVAA+QEL
Sbjct: 263 PSGRPIGRPKGAKGKKFVN-EDLRRKLEHFQSKVKESLDILKPLFDHQSPATAVAAIQEL 321
Query: 560 XMLATLDLKAPLRDET 607
MLATLDLKAPLRDET
Sbjct: 322 EMLATLDLKAPLRDET 337
[2][TOP]
>UniRef100_Q93YH8 HMG I/Y like protein n=1 Tax=Glycine max RepID=Q93YH8_SOYBN
Length = 413
Score = 187 bits (474), Expect = 7e-46
Identities = 116/210 (55%), Positives = 133/210 (63%), Gaps = 36/210 (17%)
Frame = +2
Query: 86 RGRPPGTFRSKTLKSPGRPPKPKSVS--NAGFKRRPGRPPKIQSQQPTVIPFAASILPDH 259
RGRPPGT RSK K PGRPPKPKSVS ++G KRRPGRPPK +S VIPFAA + P
Sbjct: 171 RGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAESNV-NVIPFAAPVAPGL 229
Query: 260 H--QPTLSSAR----STRPRGRPKKY---ADDDALVAA---------------------P 349
QP + +A S RPRGRPKK A AL + P
Sbjct: 230 PTVQPIVPTASVPNGSPRPRGRPKKIVAGAGAPALSSVGGAPRGRGRPRGVLPLVRPGRP 289
Query: 350 ATKAVARPNNSSRRPLGRPKGSKAAK----KLNDEDLRXXLEHFQSKIKESLDVLKPYFD 517
AV RP N +RRP+GRPKGS AA K ++DLR LEHFQSK+KESL LKPYF+
Sbjct: 290 QKLAVGRPKNPARRPVGRPKGSTAAAITAHKAANDDLRRKLEHFQSKVKESLGTLKPYFN 349
Query: 518 KESPVTAVAAVQELXMLATLDLKAPLRDET 607
ESPVTA+AA+QEL +L+TLDLKAPLRDET
Sbjct: 350 HESPVTAIAAIQELEVLSTLDLKAPLRDET 379
[3][TOP]
>UniRef100_A9P7V9 High mobility group family n=1 Tax=Populus trichocarpa
RepID=A9P7V9_POPTR
Length = 478
Score = 108 bits (269), Expect = 4e-22
Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 35/210 (16%)
Frame = +2
Query: 80 RGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQQPTV-----IPFAAS 244
+G+GRPP T + KSPGRP KPKS+ +A K+ PGRPPK Q + TV P A +
Sbjct: 230 KGKGRPPKTGPLGSKKSPGRPRKPKSLVDA--KKGPGRPPKNQLKPVTVPYAVAAPTATA 287
Query: 245 ILPDHHQPTLSSARSTRPRGRPKKYADDDALVAAPATKAVA-----------------RP 373
I D + + S RPRGRP+K A AL AA V +P
Sbjct: 288 IATD--AAAMFNVGSPRPRGRPRKGA---ALAAAGVGAVVVQAKRPGRPPKLPVIMKPKP 342
Query: 374 NNSSRRPLGRPKGS-------------KAAKKLNDEDLRXXLEHFQSKIKESLDVLKPYF 514
SS RP+GRP+ + +A +L+ DL+ LE FQS++K+++ VLKP+
Sbjct: 343 KKSSGRPVGRPRKNANAPWAITRASEPQAQAELHG-DLKRKLEFFQSRVKQAIGVLKPHL 401
Query: 515 DKESPVTAVAAVQELXMLATLDLKAPLRDE 604
+ ++AVAA+QEL LA++D+ P R+E
Sbjct: 402 -TSATISAVAAIQELEGLASMDINVPWREE 430
[4][TOP]
>UniRef100_A5BLU3 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5BLU3_VITVI
Length = 355
Score = 95.5 bits (236), Expect = 3e-18
Identities = 81/205 (39%), Positives = 102/205 (49%), Gaps = 27/205 (13%)
Frame = +2
Query: 71 VRRRGRGRPPGTFRSKTLKSPG-RPPKPKSVSNAGFKRRPGRPPKIQSQQPTVIPFAASI 247
V +RG GRPP KS G R P+PKS+ G KRRPGRPPK +Q VIP
Sbjct: 160 VPKRGPGRPP--------KSGGVRGPRPKSLD--GPKRRPGRPPK--AQLGGVIPGG--- 204
Query: 248 LPDHHQPTLSSAR---STRPRGRPKKYADDDALVAA----------PATKAVARPNNSSR 388
+P T + S RPRGRP K A V P RP +
Sbjct: 205 VPRERPRTAGVTKVKVSGRPRGRPPKILTVGAGVGGGLSVKRRGRPPKADGPKRPKKLTG 264
Query: 389 RPLGRPKGSKA-------------AKKLNDEDLRXXLEHFQSKIKESLDVLKPYFDKESP 529
RP+GRP+ A A+ +N EDL+ LEH Q KIK S+ VL+ F E+
Sbjct: 265 RPVGRPRKKLATGEILPAASEQPVAEWMNYEDLKQKLEHIQGKIKLSVGVLRTQF-SENN 323
Query: 530 VTAVAAVQELXMLATLDLKAPLRDE 604
V+A++A+QEL LAT+D+ APL E
Sbjct: 324 VSAMSALQELEDLATMDISAPLNIE 348
[5][TOP]
>UniRef100_B9T8C7 Histone h1/h5, putative n=1 Tax=Ricinus communis RepID=B9T8C7_RICCO
Length = 435
Score = 89.4 bits (220), Expect = 2e-16
Identities = 73/231 (31%), Positives = 101/231 (43%), Gaps = 50/231 (21%)
Frame = +2
Query: 23 ATVPTTTTTTTTTVDPVR--------RRGRGRPP-------------GTFRSKTLKSPGR 139
+T P + T + P +RGRGRP G R + KS GR
Sbjct: 213 STQPINSAPAATVIQPPNVGQPQMGVKRGRGRPKKVAGGGAAAAVLGGKRRGRPPKSAGR 272
Query: 140 PPKPKSVSNAGFKRRPGRPPKIQSQQPTVIPFAASILPDHHQPTLSSARSTRPRGRPKKY 319
P K KSV G K+ P R PK V+P+A ++A + RPRGRPKK
Sbjct: 273 PKKLKSVGANGVKKGPKRLPK-----SVVVPYATGA---------AAAVTARPRGRPKKG 318
Query: 320 ADDDAL------------VAAPATKAVARPN-------NSSRRPLGRPK-------GSKA 421
A A V P +A P N +RP+GRPK +
Sbjct: 319 AAPAAAPGVGGVVGIGGAVVVPGKRAGRPPKVVGGVVVNPKKRPVGRPKKNDNVSWAAAQ 378
Query: 422 AKKLNDE---DLRXXLEHFQSKIKESLDVLKPYFDKESPVTAVAAVQELXM 565
A +L E DL+ E FQSK+++++ VL+P E+P++ VAA+QEL +
Sbjct: 379 ASQLQSEAYGDLKMKFEFFQSKVRQAVGVLRPQLTNETPISVVAAIQELIL 429
[6][TOP]
>UniRef100_B9I2G1 High mobility group family n=1 Tax=Populus trichocarpa
RepID=B9I2G1_POPTR
Length = 369
Score = 73.2 bits (178), Expect = 2e-11
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Frame = +2
Query: 2 DTTTTATATVPTTTTTTTTTVDP-VRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFK 178
D+T+T T P V ++GRGRPP + + KSPGRP KPKS+ G K
Sbjct: 211 DSTSTGRKGRGRPKKMVVTEAGPLVVKKGRGRPPNSGPLGSKKSPGRPRKPKSL--VGAK 268
Query: 179 RRPGRPPKIQSQQPTVIPFAASILPDHHQPTLSSARSTRPRGRPKKYADDDALVAAPATK 358
+ PGRPPK Q +P +P+A + + + S +PRGRP+K A A +
Sbjct: 269 KGPGRPPKNQ-LKPVTVPYAVASPTATDAAAVFNVASPKPRGRPRKGAAPTNAGAVVMVQ 327
Query: 359 A-------------VARPNNSSRRPLGRPK 409
A +P +S RP+GRP+
Sbjct: 328 AKPPGRPAKVPGVMKLKPKKNSGRPVGRPR 357
[7][TOP]
>UniRef100_Q40451 DNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q40451_TOBAC
Length = 546
Score = 71.6 bits (174), Expect = 5e-11
Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 21/152 (13%)
Frame = +2
Query: 179 RRPGRPPKIQSQQP-----TVIPFAASILPDHHQPTLSSARST---------RPRGRPKK 316
+R GRPP+ T +P AA+ ++ + T + RGRP K
Sbjct: 390 KRRGRPPRSSGPPAATVGVTDVPIAAAFDTENLPNAVGGGGVTNNGALPPLGKRRGRPPK 449
Query: 317 YADDDALVAAPATKAVARPNNSSRRPLGRPKGSKAAKKLND-------EDLRXXLEHFQS 475
+ AA A V RP S +PLGRP+ + + ++D E+L+ LEH QS
Sbjct: 450 -----SYGAAAAAPTVKRPRKLSGKPLGRPRKNVTSPAVSDPKLVVAYEELKGKLEHMQS 504
Query: 476 KIKESLDVLKPYFDKESPVTAVAAVQELXMLA 571
+IKE+ + LKP + ESP A+AA+QEL LA
Sbjct: 505 RIKEAANALKPCLNAESPAIALAALQELEELA 536
[8][TOP]
>UniRef100_Q43568 DNA-binding protein (Fragment) n=1 Tax=Nicotiana tabacum
RepID=Q43568_TOBAC
Length = 380
Score = 70.1 bits (170), Expect = 1e-10
Identities = 57/177 (32%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Frame = +2
Query: 89 GRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQSQQPTVIPFAASILPDHHQP 268
G PG T K GRPP+ P + T +P AA+ ++
Sbjct: 214 GGVPGAIT--TPKGRGRPPRSSG-------------PPAATVGVTDVPIAAAFDTENLPN 258
Query: 269 TLSSARST---------RPRGRPKKYADDDALVAAPATKAVARPNNSSRRPLGRPKGSKA 421
+ T + RGRP K + AA A V RP S +PLGRP+ +
Sbjct: 259 AVGGGGVTNNGALPPLGKRRGRPPK-----SYGAAAAAPTVKRPRKLSGKPLGRPRKNVT 313
Query: 422 AKKLND-------EDLRXXLEHFQSKIKESLDVLKPYFDKESPVTAVAAVQELXMLA 571
+ ++D E+L+ LEH QS+IKE+ + LKP + ESP A+AA+QEL LA
Sbjct: 314 SPAVSDPKLVVAYEELKGKLEHMQSRIKEAANALKPCLNAESPAIALAALQELEELA 370
[9][TOP]
>UniRef100_Q9ZRM3 HMR1 protein n=1 Tax=Antirrhinum majus RepID=Q9ZRM3_ANTMA
Length = 400
Score = 67.8 bits (164), Expect = 7e-10
Identities = 64/195 (32%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Frame = +2
Query: 74 RRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNA------GFKRRPGRPPKIQS-------Q 214
R RGRGRPP T + + P + + A G R GRPPK +
Sbjct: 199 RGRGRGRPPKTAVAPPAAAAAAVPGAPAAAVAPAAQVKGPGRPRGRPPKPINVVEGGAVA 258
Query: 215 QPTVIPFAASILPDHHQPTLSSARSTRPRGRPKKYADDDALVAAPATKAVARPNNSSRRP 394
P +P A +LP ++ R RGRP K + P S +P
Sbjct: 259 APVAVP-AGGVLPVAGGSVVAGVAPKR-RGRPPKAGGEAKKPRLQTVVKPKTPRKLSGKP 316
Query: 395 LGRPKGSKAA--KKLNDE-------DLRXXLEHFQSKIKESLDVLKPYFDKESPVTAVAA 547
LGRPK + AA ++ D DL+ LE+ QS++K + +V+KP E AV A
Sbjct: 317 LGRPKKNAAAAVSQVADTQLLVAYLDLKGKLENLQSRVKLAANVIKPCLTTED---AVNA 373
Query: 548 VQELXMLATLDLKAP 592
QEL MLATL+ AP
Sbjct: 374 FQELEMLATLNTTAP 388
[10][TOP]
>UniRef100_Q9LSK7 Genomic DNA, chromosome 3, P1 clone: MBG14 n=1 Tax=Arabidopsis
thaliana RepID=Q9LSK7_ARATH
Length = 480
Score = 56.2 bits (134), Expect = 2e-06
Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 34/213 (15%)
Frame = +2
Query: 56 TTVDPVRRRGRGRPPGTFRSKTLKSPGRPPKPKSVSNAGFKRRPGRPPKIQS----QQPT 223
T V +RG GRP R +P P ++ AG +R GRPP ++ ++P
Sbjct: 226 TPVTESAKRGPGRP----RKNGSAAPATAPIVQASVMAGIMKRRGRPPGRRAAGRQRKPK 281
Query: 224 VIPFAASILPDHHQPTLSSARSTRPRGRPKKYADDDALVA------------APATK--- 358
+ AS+ P A R RGRP++ D ++V+ AP K
Sbjct: 282 SVSSTASVYP-------YVANGARRRGRPRRVVDPSSIVSVAPVGGENVAAVAPGMKRGR 334
Query: 359 ------------AVARPNNSSRRPLGRPK--GSKAAKKLNDE-DLRXXLEHFQSKIKESL 493
+ +P RP+GRP+ G+ D +L+ + FQ K+KE +
Sbjct: 335 GRPPKIGGVISRLIMKPKRGRGRPVGRPRKIGTSVTTGTQDSGELKKKFDIFQEKVKEIV 394
Query: 494 DVLKPYFDKESPVTAVAAVQELXMLATLDLKAP 592
VLK E+ V A+++L L + P
Sbjct: 395 KVLKDGVTSENQ-AVVQAIKDLEALTVTETVEP 426