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[1][TOP]
>UniRef100_B7FGH5 Putative uncharacterized protein n=1 Tax=Medicago truncatula
RepID=B7FGH5_MEDTR
Length = 116
Score = 146 bits (368), Expect = 1e-33
Identities = 71/71 (100%), Positives = 71/71 (100%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF
Sbjct: 46 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 105
Query: 402 EAELLKFSKDY 370
EAELLKFSKDY
Sbjct: 106 EAELLKFSKDY 116
[2][TOP]
>UniRef100_C6SW39 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SW39_SOYBN
Length = 116
Score = 136 bits (342), Expect = 1e-30
Identities = 63/71 (88%), Positives = 69/71 (97%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+DPNVLFAGYKLPHPLQYKII+RIHTTSQSSPMQAYNQS+NDLD+ELD LKS F
Sbjct: 46 LRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQSVNDLDRELDHLKSAF 105
Query: 402 EAELLKFSKDY 370
EAE+LKFS+DY
Sbjct: 106 EAEMLKFSRDY 116
[3][TOP]
>UniRef100_A7P675 Chromosome chr4 scaffold_6, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P675_VITVI
Length = 116
Score = 125 bits (315), Expect = 2e-27
Identities = 60/71 (84%), Positives = 65/71 (91%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+D NVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQ+INDLDKELD LK+ F
Sbjct: 46 LRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAF 105
Query: 402 EAELLKFSKDY 370
E EL K S++Y
Sbjct: 106 EVELAKHSREY 116
[4][TOP]
>UniRef100_A5BQX0 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5BQX0_VITVI
Length = 129
Score = 125 bits (315), Expect = 2e-27
Identities = 60/71 (84%), Positives = 65/71 (91%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+D NVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQ+INDLDKELD LK+ F
Sbjct: 59 LRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAF 118
Query: 402 EAELLKFSKDY 370
E EL K S++Y
Sbjct: 119 EVELAKHSREY 129
[5][TOP]
>UniRef100_Q38859 DNA-directed RNA polymerase II subunit RPB11 n=1 Tax=Arabidopsis
thaliana RepID=RPB11_ARATH
Length = 116
Score = 120 bits (301), Expect = 8e-26
Identities = 56/71 (78%), Positives = 65/71 (91%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+RMQLH+D NVLFAGY+LPHPL+YKII+RIHTTSQSSPMQAYNQ+INDLDKELD LK+ F
Sbjct: 46 VRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQF 105
Query: 402 EAELLKFSKDY 370
EAE+ KFS +
Sbjct: 106 EAEVAKFSNQF 116
[6][TOP]
>UniRef100_A9PCB4 Predicted protein n=1 Tax=Populus trichocarpa RepID=A9PCB4_POPTR
Length = 116
Score = 118 bits (296), Expect = 3e-25
Identities = 56/64 (87%), Positives = 61/64 (95%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+D NVLFAGYKLPHPL+YKII+RIHTTSQSSPMQAYNQ+INDLDKELD LK+ F
Sbjct: 46 LRMQLHRDDNVLFAGYKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAF 105
Query: 402 EAEL 391
EAEL
Sbjct: 106 EAEL 109
[7][TOP]
>UniRef100_B9RVP3 DNA-directed RNA polymerase II 13.6 kD polypeptide, putative n=1
Tax=Ricinus communis RepID=B9RVP3_RICCO
Length = 156
Score = 115 bits (287), Expect = 3e-24
Identities = 54/61 (88%), Positives = 58/61 (95%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+D NVLFAGY+LPHPLQYKII+RIHTTSQSSPMQAYNQ+INDLDKELD LKS F
Sbjct: 46 LRMQLHRDENVLFAGYRLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKSAF 105
Query: 402 E 400
E
Sbjct: 106 E 106
[8][TOP]
>UniRef100_C5YC44 Putative uncharacterized protein Sb06g001360 n=1 Tax=Sorghum
bicolor RepID=C5YC44_SORBI
Length = 117
Score = 112 bits (281), Expect = 2e-23
Identities = 52/67 (77%), Positives = 60/67 (89%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+RMQLH+DPNVLFAGYKLPHPLQYKII+RIHTTSQSSP QAY+Q++NDLDKEL+ LK F
Sbjct: 46 VRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYSQAVNDLDKELEYLKQAF 105
Query: 402 EAELLKF 382
E E +F
Sbjct: 106 EDEKNRF 112
[9][TOP]
>UniRef100_B4FJS1 DNA-directed RNA polymerase II subunit J n=1 Tax=Zea mays
RepID=B4FJS1_MAIZE
Length = 120
Score = 112 bits (281), Expect = 2e-23
Identities = 53/63 (84%), Positives = 57/63 (90%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+DPNVLFAGYKLPHPLQYKII+RIHTTSQSSP QAY Q+INDLDKEL+ LK F
Sbjct: 46 LRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYTQAINDLDKELEYLKQAF 105
Query: 402 EAE 394
E E
Sbjct: 106 EDE 108
[10][TOP]
>UniRef100_A9NN58 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=A9NN58_PICSI
Length = 120
Score = 111 bits (277), Expect = 5e-23
Identities = 51/70 (72%), Positives = 61/70 (87%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+RMQLH+DPNVLFAGYKLPHPLQYKI++RI TTSQSSPMQAYN +I+DLDKELD LK F
Sbjct: 46 VRMQLHRDPNVLFAGYKLPHPLQYKILLRIQTTSQSSPMQAYNLAIDDLDKELDHLKRSF 105
Query: 402 EAELLKFSKD 373
E E+++ +
Sbjct: 106 EDEMVRLQSE 115
[11][TOP]
>UniRef100_C5X6I3 Putative uncharacterized protein Sb02g000210 n=1 Tax=Sorghum
bicolor RepID=C5X6I3_SORBI
Length = 120
Score = 110 bits (276), Expect = 6e-23
Identities = 51/69 (73%), Positives = 60/69 (86%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+DPNVLFAGYKLPHPLQYKII+RIHT SQSSP QAY+Q++NDLDKEL+ LK F
Sbjct: 46 LRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTMSQSSPTQAYSQAVNDLDKELEYLKQAF 105
Query: 402 EAELLKFSK 376
E E ++ +
Sbjct: 106 EDEKNRYEE 114
[12][TOP]
>UniRef100_Q6ZA50 Os07g0172500 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q6ZA50_ORYSJ
Length = 120
Score = 110 bits (275), Expect = 8e-23
Identities = 48/69 (69%), Positives = 60/69 (86%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+DPNVLFAGYKLPHPLQYKI++R+HT +QS+P QAY Q+INDLDKEL+ LK F
Sbjct: 46 LRMQLHRDPNVLFAGYKLPHPLQYKILVRVHTANQSTPTQAYTQAINDLDKELENLKQAF 105
Query: 402 EAELLKFSK 376
E E +++ +
Sbjct: 106 EDEKIRYEE 114
[13][TOP]
>UniRef100_A3BH10 Putative uncharacterized protein n=2 Tax=Oryza sativa
RepID=A3BH10_ORYSJ
Length = 135
Score = 110 bits (275), Expect = 8e-23
Identities = 48/69 (69%), Positives = 60/69 (86%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+DPNVLFAGYKLPHPLQYKI++R+HT +QS+P QAY Q+INDLDKEL+ LK F
Sbjct: 61 LRMQLHRDPNVLFAGYKLPHPLQYKILVRVHTANQSTPTQAYTQAINDLDKELENLKQAF 120
Query: 402 EAELLKFSK 376
E E +++ +
Sbjct: 121 EDEKIRYEE 129
[14][TOP]
>UniRef100_A9RYQ0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RYQ0_PHYPA
Length = 137
Score = 103 bits (258), Expect = 8e-21
Identities = 48/79 (60%), Positives = 61/79 (77%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRMQLH+DP+VLFAGYKLPHPLQY+++++I T SQSSPMQAYN +I DL KELD LK+ F
Sbjct: 46 LRMQLHRDPSVLFAGYKLPHPLQYRVVVKIQTNSQSSPMQAYNLAITDLTKELDHLKATF 105
Query: 402 EAELLKFSKDY*LTTTVKM 346
E L++ K T + +
Sbjct: 106 EVNLMQILKVLVFVTEISL 124
[15][TOP]
>UniRef100_A9RFS8 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RFS8_PHYPA
Length = 117
Score = 102 bits (253), Expect = 3e-20
Identities = 47/71 (66%), Positives = 59/71 (83%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+RMQLH+DP+VLFAGY+LPHPLQY+++++I TTSQSSPMQAYN +I DL KELD LK+ F
Sbjct: 46 IRMQLHRDPSVLFAGYRLPHPLQYRLVVKIQTTSQSSPMQAYNLAITDLIKELDHLKAVF 105
Query: 402 EAELLKFSKDY 370
E E + DY
Sbjct: 106 EHETSQKQADY 116
[16][TOP]
>UniRef100_C6T5N7 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6T5N7_SOYBN
Length = 130
Score = 81.3 bits (199), Expect = 5e-14
Identities = 38/54 (70%), Positives = 45/54 (83%)
Frame = +1
Query: 421 IKFLVQIVDRLIICLHW*RLAGSVYPNNNFVLKRMRKFVSSK*HIGVFVKLHAQ 582
IKF VQI++RL+ICLHW RL VYP++NFVLKR+RK VS K HIGV VKLHA+
Sbjct: 2 IKFPVQIINRLVICLHWRRLTSGVYPDDNFVLKRVRKLVSGKQHIGVSVKLHAE 55
[17][TOP]
>UniRef100_C6TI25 Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max
RepID=C6TI25_SOYBN
Length = 128
Score = 79.7 bits (195), Expect = 2e-13
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +1
Query: 421 IKFLVQIVDRLIICLHW*RLAGSVYPNNNFVLKRMRKFVSSK*HIGVFVKLHAQ 582
IKF VQI++RL+ICLHW RL VYP+NNFVLKRMRK VS K IGV V+LHA+
Sbjct: 2 IKFPVQIINRLVICLHWRRLTSGVYPDNNFVLKRMRKLVSGKQDIGVSVQLHAE 55
[18][TOP]
>UniRef100_UPI0000EB32C9 UPI0000EB32C9 related cluster n=1 Tax=Canis lupus familiaris
RepID=UPI0000EB32C9
Length = 129
Score = 75.5 bits (184), Expect = 3e-12
Identities = 35/66 (53%), Positives = 46/66 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 59 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 118
Query: 402 EAELLK 385
L+K
Sbjct: 119 RPSLVK 124
[19][TOP]
>UniRef100_C1EAB7 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299
RepID=C1EAB7_9CHLO
Length = 101
Score = 74.7 bits (182), Expect = 5e-12
Identities = 31/56 (55%), Positives = 44/56 (78%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTL 415
+RMQLH+DPNV+FAGY++PHP +I+I++HT SSPMQA +S+N L +E+ L
Sbjct: 46 VRMQLHRDPNVVFAGYQVPHPSDNRIVIKVHTNKNSSPMQAMTESVNCLSEEVSRL 101
[20][TOP]
>UniRef100_Q16IF1 DNA-directed RNA polymerase II 13.3 kDa polypeptide n=1 Tax=Aedes
aegypti RepID=Q16IF1_AEDAE
Length = 117
Score = 74.3 bits (181), Expect = 6e-12
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDPNVLFAGYKLPHPL++K +IRI TTS SP +A+ +I DL EL + F
Sbjct: 46 IRNQLLKDPNVLFAGYKLPHPLEHKFVIRIQTTSDYSPQEAFMNAITDLLSELSLFEERF 105
Query: 402 E 400
+
Sbjct: 106 K 106
[21][TOP]
>UniRef100_Q7PVQ9 DNA-directed RNA polymerase II subunit RPB11 n=1 Tax=Anopheles
gambiae RepID=RPB11_ANOGA
Length = 117
Score = 74.3 bits (181), Expect = 6e-12
Identities = 37/70 (52%), Positives = 49/70 (70%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDPNVLFAGYKLPHPL++K ++RI TTS+ SP +A+ +I DL EL + F
Sbjct: 46 IRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERF 105
Query: 402 EAELLKFSKD 373
E +K K+
Sbjct: 106 R-EAMKEKKE 114
[22][TOP]
>UniRef100_B3S6B1 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S6B1_TRIAD
Length = 116
Score = 73.9 bits (180), Expect = 8e-12
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP V+FAGYK+PHPL+Y ++IR+ TTS SP +A++ ++ DL EL+ L F
Sbjct: 46 IRAQLLKDPQVIFAGYKVPHPLEYDVVIRVQTTSNYSPEEAFSNALTDLISELNVLDDRF 105
Query: 402 EA 397
+A
Sbjct: 106 KA 107
[23][TOP]
>UniRef100_B0WDB4 DNA-directed RNA polymerase II subunit J n=1 Tax=Culex
quinquefasciatus RepID=B0WDB4_CULQU
Length = 117
Score = 73.9 bits (180), Expect = 8e-12
Identities = 35/60 (58%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDPNVLFAGYKLPHPL++K +IRI TTS SP +A+ +I DL EL + F
Sbjct: 46 IRNQLLKDPNVLFAGYKLPHPLEHKFVIRIQTTSDYSPQEAFMNAITDLLSELSLFEERF 105
[24][TOP]
>UniRef100_UPI0000D5702A PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa
polypeptide n=1 Tax=Tribolium castaneum
RepID=UPI0000D5702A
Length = 117
Score = 73.6 bits (179), Expect = 1e-11
Identities = 37/70 (52%), Positives = 48/70 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDPNVLFAGYK+PHPL++K ++RI TTS SP +A SI DL EL + F
Sbjct: 46 IRNQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYSPQEALMNSITDLISELSLFEERF 105
Query: 402 EAELLKFSKD 373
+ E +K K+
Sbjct: 106 K-EAIKEKKE 114
[25][TOP]
>UniRef100_UPI000020F7F2 DNA directed RNA polymerase II polypeptide J-related n=1 Tax=Homo
sapiens RepID=UPI000020F7F2
Length = 115
Score = 73.6 bits (179), Expect = 1e-11
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 45 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
Query: 402 EAELL 388
LL
Sbjct: 105 RTCLL 109
[26][TOP]
>UniRef100_Q4TAB3 Chromosome undetermined SCAF7390, whole genome shotgun sequence n=1
Tax=Tetraodon nigroviridis RepID=Q4TAB3_TETNG
Length = 117
Score = 73.6 bits (179), Expect = 1e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL++KI+IR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IRAQLMKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[27][TOP]
>UniRef100_C1BLH2 DNA-directed RNA polymerase II subunit J n=1 Tax=Osmerus mordax
RepID=C1BLH2_OSMMO
Length = 117
Score = 73.6 bits (179), Expect = 1e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL++KI+IR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVSI 109
[28][TOP]
>UniRef100_B5XEX2 DNA-directed RNA polymerase II subunit RPB11-a n=3 Tax=Euteleostei
RepID=B5XEX2_SALSA
Length = 117
Score = 73.6 bits (179), Expect = 1e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL++KI+IR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IRQQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[29][TOP]
>UniRef100_Q9H1A7 DNA-directed RNA polymerase II subunit RPB11-b2 n=1 Tax=Homo
sapiens RepID=RPB1C_HUMAN
Length = 115
Score = 73.6 bits (179), Expect = 1e-11
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 45 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
Query: 402 EAELL 388
LL
Sbjct: 105 RTCLL 109
[30][TOP]
>UniRef100_Q9GZM3 DNA-directed RNA polymerase II subunit RPB11-b1 n=1 Tax=Homo
sapiens RepID=RPB1B_HUMAN
Length = 115
Score = 73.6 bits (179), Expect = 1e-11
Identities = 35/65 (53%), Positives = 45/65 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 45 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
Query: 402 EAELL 388
LL
Sbjct: 105 RTCLL 109
[31][TOP]
>UniRef100_UPI000180BEE7 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide J n=1 Tax=Ciona intestinalis
RepID=UPI000180BEE7
Length = 117
Score = 73.2 bits (178), Expect = 1e-11
Identities = 33/62 (53%), Positives = 44/62 (70%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KDP VLFAGYK+PHPL++K I+R+ TT SP +A+ +I DL E+ L+ F
Sbjct: 46 LRTQLLKDPKVLFAGYKVPHPLEHKFILRVQTTGDYSPQEAFTNAITDLISEISLLEERF 105
Query: 402 EA 397
+A
Sbjct: 106 KA 107
[32][TOP]
>UniRef100_UPI0000019E7A UPI0000019E7A related cluster n=1 Tax=Takifugu rubripes
RepID=UPI0000019E7A
Length = 117
Score = 73.2 bits (178), Expect = 1e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL++KI+IR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IRAQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[33][TOP]
>UniRef100_C1BJJ1 DNA-directed RNA polymerase II subunit J n=1 Tax=Osmerus mordax
RepID=C1BJJ1_OSMMO
Length = 117
Score = 73.2 bits (178), Expect = 1e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL++KI+IR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IRSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[34][TOP]
>UniRef100_Q4VBU5 Novel protein (Zgc:110005) n=1 Tax=Danio rerio RepID=Q4VBU5_DANRE
Length = 117
Score = 72.8 bits (177), Expect = 2e-11
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL++K++IR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[35][TOP]
>UniRef100_Q59FR2 MGC13098 protein variant (Fragment) n=1 Tax=Homo sapiens
RepID=Q59FR2_HUMAN
Length = 180
Score = 72.8 bits (177), Expect = 2e-11
Identities = 33/60 (55%), Positives = 44/60 (73%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL +EL L+ F
Sbjct: 67 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERF 126
[36][TOP]
>UniRef100_UPI000194D687 PREDICTED: putative DNA directed RNA polymerase II polypeptide J
n=1 Tax=Taeniopygia guttata RepID=UPI000194D687
Length = 113
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 42 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 101
Query: 402 EAEL 391
+
Sbjct: 102 RVAI 105
[37][TOP]
>UniRef100_UPI0000E81348 PREDICTED: similar to Ras GTPase-activating protein 4
(RasGAP-activating-like protein 2) (Calcium-promoted Ras
inactivator) n=1 Tax=Gallus gallus RepID=UPI0000E81348
Length = 763
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 692 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 751
Query: 402 EAEL 391
+
Sbjct: 752 RVAI 755
[38][TOP]
>UniRef100_UPI0000E2167E PREDICTED: similar to RAS p21 protein activator 4, partial n=1
Tax=Pan troglodytes RepID=UPI0000E2167E
Length = 262
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 191 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 250
Query: 402 EAEL 391
+
Sbjct: 251 RVAI 254
[39][TOP]
>UniRef100_UPI0000D9A6ED PREDICTED: similar to DNA-directed RNA polymerase II subunit J
(DNA-directed RNA polymerase II 13.3 kDa polypeptide)
(RPB11) n=1 Tax=Macaca mulatta RepID=UPI0000D9A6ED
Length = 191
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 120 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 179
Query: 402 EAEL 391
+
Sbjct: 180 RVAI 183
[40][TOP]
>UniRef100_UPI00005A0EE3 PREDICTED: similar to RAS p21 protein activator 4 n=1 Tax=Canis lupus
familiaris RepID=UPI00005A0EE3
Length = 1108
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 1037 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 1096
Query: 402 EAEL 391
+
Sbjct: 1097 RVAI 1100
[41][TOP]
>UniRef100_UPI00003AB60B UPI00003AB60B related cluster n=1 Tax=Gallus gallus
RepID=UPI00003AB60B
Length = 100
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 29 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 88
Query: 402 EAEL 391
+
Sbjct: 89 RVAI 92
[42][TOP]
>UniRef100_Q28CA5 Polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa n=1
Tax=Xenopus (Silurana) tropicalis RepID=Q28CA5_XENTR
Length = 117
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[43][TOP]
>UniRef100_Q29MR4 GA19897 n=2 Tax=pseudoobscura subgroup RepID=Q29MR4_DROPS
Length = 117
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/61 (54%), Positives = 45/61 (73%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDPNVLFAGYK+PHPL++K +IRI TT++ SP +A+ +I DL EL + F
Sbjct: 46 IRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTAEYSPQEAFMNAITDLLAELSLFEERF 105
Query: 402 E 400
+
Sbjct: 106 K 106
[44][TOP]
>UniRef100_O08740 DNA-directed RNA polymerase II subunit RPB11 n=1 Tax=Mus musculus
RepID=RPB11_MOUSE
Length = 117
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RGAI 109
[45][TOP]
>UniRef100_P52435 DNA-directed RNA polymerase II subunit RPB11-a n=5 Tax=Amniota
RepID=RPB11_HUMAN
Length = 117
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[46][TOP]
>UniRef100_UPI0000E4A5EB PREDICTED: similar to RNA polymerase II subunit n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A5EB
Length = 117
Score = 72.0 bits (175), Expect = 3e-11
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KDP VLFAGYK+PHPL++K ++R+ TT SP +A+ +I DL E+ L+ F
Sbjct: 46 LRAQLLKDPQVLFAGYKVPHPLEHKFVLRVQTTPDYSPQEAFTNAITDLISEISLLEERF 105
Query: 402 EAELLKFSKD 373
++ +
Sbjct: 106 NVSSIRLDSE 115
[47][TOP]
>UniRef100_UPI0000E49F0F PREDICTED: similar to RNA polymerase II subunit, partial n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E49F0F
Length = 99
Score = 72.0 bits (175), Expect = 3e-11
Identities = 31/70 (44%), Positives = 45/70 (64%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KDP VLFAGYK+PHPL++K ++R+ TT SP +A+ +I DL E+ L+ F
Sbjct: 28 LRAQLLKDPQVLFAGYKVPHPLEHKFVLRVQTTPDYSPQEAFTNAITDLISEISLLEERF 87
Query: 402 EAELLKFSKD 373
++ +
Sbjct: 88 NVSSIRLDSE 97
[48][TOP]
>UniRef100_UPI0000E21685 PREDICTED: RAS p21 protein activator 4 isoform 2 n=1 Tax=Pan
troglodytes RepID=UPI0000E21685
Length = 576
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 463 IKTQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 522
[49][TOP]
>UniRef100_UPI00005EC058 PREDICTED: similar to RNA polymerase II isoform 2 n=1
Tax=Monodelphis domestica RepID=UPI00005EC058
Length = 128
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
[50][TOP]
>UniRef100_UPI00001F2CA1 polymerase (RNA) II (DNA directed) polypeptide J n=1 Tax=Mus
musculus RepID=UPI00001F2CA1
Length = 111
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
[51][TOP]
>UniRef100_UPI0001AE70B6 UPI0001AE70B6 related cluster n=1 Tax=Homo sapiens
RepID=UPI0001AE70B6
Length = 180
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 67 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 126
[52][TOP]
>UniRef100_UPI0000163C17 UPI0000163C17 related cluster n=1 Tax=Homo sapiens
RepID=UPI0000163C17
Length = 158
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 45 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
[53][TOP]
>UniRef100_Q5M778 LOC496260 protein n=1 Tax=Xenopus laevis RepID=Q5M778_XENLA
Length = 117
Score = 72.0 bits (175), Expect = 3e-11
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KI+IR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFAGYKVPHPLEHKIVIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[54][TOP]
>UniRef100_Q9H1A6 RPB11a protein n=1 Tax=Homo sapiens RepID=Q9H1A6_HUMAN
Length = 127
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
[55][TOP]
>UniRef100_Q8TDE6 DNA-directed RNA polymerase II subunit 11 n=1 Tax=Homo sapiens
RepID=Q8TDE6_HUMAN
Length = 158
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 45 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
[56][TOP]
>UniRef100_A6NK79 Putative uncharacterized protein POLR2J n=1 Tax=Homo sapiens
RepID=A6NK79_HUMAN
Length = 116
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
[57][TOP]
>UniRef100_A6NFM0 Putative uncharacterized protein POLR2J2 n=1 Tax=Homo sapiens
RepID=A6NFM0_HUMAN
Length = 158
Score = 72.0 bits (175), Expect = 3e-11
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 45 IKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 104
[58][TOP]
>UniRef100_UPI000194D688 PREDICTED: similar to DNA directed RNA polymerase II polypeptide J
n=1 Tax=Taeniopygia guttata RepID=UPI000194D688
Length = 137
Score = 71.6 bits (174), Expect = 4e-11
Identities = 33/62 (53%), Positives = 43/62 (69%)
Frame = -1
Query: 576 MQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEA 397
+QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 68 VQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV 127
Query: 396 EL 391
+
Sbjct: 128 AI 129
[59][TOP]
>UniRef100_UPI0000F4F017 polymerase (RNA) II (DNA directed) polypeptide J n=1 Tax=Mus
musculus RepID=UPI0000F4F017
Length = 87
Score = 71.6 bits (174), Expect = 4e-11
Identities = 33/63 (52%), Positives = 43/63 (68%)
Frame = -1
Query: 579 RMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFE 400
+ QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 17 KKQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 76
Query: 399 AEL 391
+
Sbjct: 77 VAI 79
[60][TOP]
>UniRef100_Q9VJE4 DNA-directed RNA polymerase II subunit RPB11 n=9 Tax=Drosophila
RepID=RPB11_DROME
Length = 117
Score = 71.6 bits (174), Expect = 4e-11
Identities = 33/61 (54%), Positives = 44/61 (72%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDPNVLFAGYK+PHPL++K +IRI TT+ SP +A+ +I DL EL + F
Sbjct: 46 IRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERF 105
Query: 402 E 400
+
Sbjct: 106 K 106
[61][TOP]
>UniRef100_UPI00015B4993 PREDICTED: similar to DNA-directed RNA polymerase II 13.3 kDa
polypeptide n=1 Tax=Nasonia vitripennis
RepID=UPI00015B4993
Length = 117
Score = 71.2 bits (173), Expect = 5e-11
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYKLPHPL++K +IRI TTS +P +A+ ++ DL EL + F
Sbjct: 46 IRNQLLKDPQVLFAGYKLPHPLEHKFVIRIQTTSDHTPHEAFMNAVTDLIAELSLFEERF 105
Query: 402 EAELLKFSKD 373
+ E +K K+
Sbjct: 106 K-EAIKEKKE 114
[62][TOP]
>UniRef100_B7PS85 RNA polymerases L, putative n=1 Tax=Ixodes scapularis
RepID=B7PS85_IXOSC
Length = 117
Score = 71.2 bits (173), Expect = 5e-11
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL++K I+R+ TT S+P +A+ +I DL EL L+ F
Sbjct: 46 IRAQLLKDPCVLFAGYKVPHPLEHKFILRVQTTPDSTPQEAFTNAITDLISELSLLEERF 105
Query: 402 E 400
+
Sbjct: 106 K 106
[63][TOP]
>UniRef100_Q3TYI2 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q3TYI2_MOUSE
Length = 117
Score = 70.9 bits (172), Expect = 7e-11
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLF GYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLFVGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[64][TOP]
>UniRef100_C9JYL5 Putative uncharacterized protein POLR2J3 n=1 Tax=Homo sapiens
RepID=C9JYL5_HUMAN
Length = 128
Score = 70.9 bits (172), Expect = 7e-11
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -1
Query: 573 QLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
QL KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 18 QLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 74
[65][TOP]
>UniRef100_UPI000051A5CD PREDICTED: similar to DNA-directed RNA polymerase II subunit J
(DNA-directed RNA polymerase II 13.3 kDa polypeptide)
(RPB11) n=1 Tax=Apis mellifera RepID=UPI000051A5CD
Length = 117
Score = 70.1 bits (170), Expect = 1e-10
Identities = 35/70 (50%), Positives = 48/70 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL++K +IRI TTS +P +A+ +I DL EL + F
Sbjct: 46 IRNQLLKDPQVLFAGYKVPHPLEHKFVIRIQTTSDYTPHEAFMHAITDLIAELSLFEERF 105
Query: 402 EAELLKFSKD 373
+ E +K K+
Sbjct: 106 K-EAIKEKKE 114
[66][TOP]
>UniRef100_UPI000013CAF5 UPI000013CAF5 related cluster n=1 Tax=Homo sapiens
RepID=UPI000013CAF5
Length = 117
Score = 70.1 bits (170), Expect = 1e-10
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = -1
Query: 564 KDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELL 388
KDP VLFAGYK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F LL
Sbjct: 53 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLL 111
[67][TOP]
>UniRef100_C6K0C3 Putative DNA-directed RNA polymerase II subunit J (Fragment) n=9
Tax=Pyretophorus RepID=C6K0C3_ANOAR
Length = 85
Score = 70.1 bits (170), Expect = 1e-10
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKE 427
+R QL KDPNVLFAGYKLPHPL++K ++RI TTS+ SP +A+ +I DL E
Sbjct: 34 IRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSE 85
[68][TOP]
>UniRef100_UPI000186CAF7 DNA-directed RNA polymerase II subunit J, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186CAF7
Length = 117
Score = 69.7 bits (169), Expect = 2e-10
Identities = 35/70 (50%), Positives = 47/70 (67%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDPNVLFAGYK+PHPL++K ++RI TTS +P A +I DL EL + F
Sbjct: 46 IRDQLLKDPNVLFAGYKVPHPLEHKFVLRIQTTSDYTPQDALMNAITDLLSELSLFEERF 105
Query: 402 EAELLKFSKD 373
+ E +K K+
Sbjct: 106 K-EAIKEKKE 114
[69][TOP]
>UniRef100_Q8IH32 GM15177p n=1 Tax=Drosophila melanogaster RepID=Q8IH32_DROME
Length = 136
Score = 69.7 bits (169), Expect = 2e-10
Identities = 32/58 (55%), Positives = 42/58 (72%)
Frame = -1
Query: 573 QLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFE 400
QL KDPNVLFAGYK+PHPL++K +IRI TT+ SP +A+ +I DL EL + F+
Sbjct: 68 QLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 125
[70][TOP]
>UniRef100_C6K0F4 Putative DNA-directed RNA polymerase II subunit J (Fragment) n=1
Tax=Anopheles gambiae RepID=C6K0F4_ANOGA
Length = 79
Score = 69.7 bits (169), Expect = 2e-10
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKE 427
+R QL KDPNVLFAGYKLPHPL++K ++RI TTS+ SP +A+ +I DL E
Sbjct: 28 IRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMXAITDLLSE 79
[71][TOP]
>UniRef100_A9V2R7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V2R7_MONBE
Length = 119
Score = 69.7 bits (169), Expect = 2e-10
Identities = 31/64 (48%), Positives = 47/64 (73%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
L QL KDP VLFAGYK+PHPL++ I++R+HTT+Q SP +A Q+++D+ ++ L+S
Sbjct: 46 LASQLAKDPRVLFAGYKVPHPLEHYILLRVHTTAQYSPKEALKQALHDVIYDVAHLQSSL 105
Query: 402 EAEL 391
+L
Sbjct: 106 REQL 109
[72][TOP]
>UniRef100_A7SGE2 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SGE2_NEMVE
Length = 117
Score = 69.7 bits (169), Expect = 2e-10
Identities = 31/62 (50%), Positives = 44/62 (70%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KDP V+FAGYK+ HPL++K ++R+ TTS SP +A+ +I DL E+ L+ F
Sbjct: 46 LREQLLKDPQVIFAGYKVSHPLEHKFVLRVQTTSDYSPQEAFTHAITDLISEVSLLEERF 105
Query: 402 EA 397
+A
Sbjct: 106 KA 107
[73][TOP]
>UniRef100_UPI0001868C2E hypothetical protein BRAFLDRAFT_286064 n=1 Tax=Branchiostoma
floridae RepID=UPI0001868C2E
Length = 116
Score = 69.3 bits (168), Expect = 2e-10
Identities = 30/61 (49%), Positives = 43/61 (70%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KDP V+FAGYK+PHPL++K ++R+ TT SP +A+ +I DL E+ L+ F
Sbjct: 46 LRAQLLKDPQVIFAGYKVPHPLEHKFVLRLQTTPDYSPQEAFTNAITDLISEVSLLEERF 105
Query: 402 E 400
+
Sbjct: 106 K 106
[74][TOP]
>UniRef100_C1BF62 DNA-directed RNA polymerase II subunit J n=1 Tax=Oncorhynchus
mykiss RepID=C1BF62_ONCMY
Length = 117
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/64 (48%), Positives = 42/64 (65%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL++K +IR+ TT SP +A+ I DL EL L+ F
Sbjct: 46 IKQQLLKDPQVLFAGYKVPHPLEHKTVIRVQTTPDYSPQEAFTNVITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[75][TOP]
>UniRef100_Q69G41 RNA polymerase II subunit n=1 Tax=Branchiostoma belcheri
RepID=Q69G41_BRABE
Length = 135
Score = 69.3 bits (168), Expect = 2e-10
Identities = 30/60 (50%), Positives = 42/60 (70%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KDP V+FAGYK+PHPL++K ++R+ TT SP +A+ +I DL E+ L+ F
Sbjct: 46 LRAQLLKDPQVIFAGYKVPHPLEHKFVLRVQTTPDYSPQEAFTNAITDLISEVSLLEERF 105
[76][TOP]
>UniRef100_C3YY41 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3YY41_BRAFL
Length = 117
Score = 68.9 bits (167), Expect = 3e-10
Identities = 29/61 (47%), Positives = 43/61 (70%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP V+FAGYK+PHPL++K ++R+ TT SP +A+ +I DL E+ L+ F
Sbjct: 47 IRQQLLKDPQVIFAGYKVPHPLEHKFVLRLQTTPDYSPQEAFTNAITDLISEVSLLEERF 106
Query: 402 E 400
+
Sbjct: 107 K 107
[77][TOP]
>UniRef100_Q9XVH6 Probable DNA-directed RNA polymerase II subunit RPB11 n=1
Tax=Caenorhabditis elegans RepID=RPB11_CAEEL
Length = 122
Score = 68.9 bits (167), Expect = 3e-10
Identities = 33/66 (50%), Positives = 46/66 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
L++QL KDP VLFAGYK PHPL++KI++RI TT+ ++P A +I DL EL L+
Sbjct: 45 LKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRI 104
Query: 402 EAELLK 385
+A + K
Sbjct: 105 DAAIKK 110
[78][TOP]
>UniRef100_UPI0001923CF4 PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI0001923CF4
Length = 117
Score = 68.2 bits (165), Expect = 5e-10
Identities = 33/70 (47%), Positives = 47/70 (67%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP V+FAGY++PHPL++K +RI TT SP +A+ +I DL E+ L+ F
Sbjct: 46 IRSQLLKDPQVIFAGYRVPHPLEHKFNVRIQTTPDYSPQEAFTSAITDLLSEISLLEERF 105
Query: 402 EAELLKFSKD 373
++ LK KD
Sbjct: 106 KS-ALKEKKD 114
[79][TOP]
>UniRef100_A4S056 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S056_OSTLU
Length = 115
Score = 68.2 bits (165), Expect = 5e-10
Identities = 27/64 (42%), Positives = 46/64 (71%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LRM+LHK+P+V+FAGYK PHP ++I++++HT + ++P+QA ++ +L E+ L F
Sbjct: 46 LRMELHKNPDVVFAGYKNPHPTDHRIVLKVHTNANTTPVQALRDAVTNLRAEVGDLSQQF 105
Query: 402 EAEL 391
E+
Sbjct: 106 ADEI 109
[80][TOP]
>UniRef100_C4WRJ5 ACYPI008208 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WRJ5_ACYPI
Length = 117
Score = 67.8 bits (164), Expect = 6e-10
Identities = 34/64 (53%), Positives = 41/64 (64%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDPNVLFAGYK PHPL++K +RI TTS +P A SI DL EL + F
Sbjct: 46 IRNQLLKDPNVLFAGYKQPHPLEHKFELRIQTTSDYTPQDALTNSITDLLAELSLFEERF 105
Query: 402 EAEL 391
+ L
Sbjct: 106 KEAL 109
[81][TOP]
>UniRef100_Q60SM4 Probable DNA-directed RNA polymerase II subunit RPB11 n=1
Tax=Caenorhabditis briggsae RepID=RPB11_CAEBR
Length = 122
Score = 67.0 bits (162), Expect = 1e-09
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
L++QL KDP VLFAGYK PHPL++KI++R+ TT+ ++P A +I DL EL L+
Sbjct: 45 LKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRI 104
Query: 402 EAELLK 385
++ + K
Sbjct: 105 DSAIKK 110
[82][TOP]
>UniRef100_C4Q8A9 DNA-directed rna polymerase II 13.3 kD polypeptide, putative n=1
Tax=Schistosoma mansoni RepID=C4Q8A9_SCHMA
Length = 110
Score = 65.5 bits (158), Expect = 3e-09
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = -1
Query: 573 QLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
QL KDP VLFAGYK PHPL++KI+IR+HT ++P+ + ++ DL E+ ++ F
Sbjct: 49 QLLKDPRVLFAGYKAPHPLEHKIVIRVHTAHPATPVDVFVSALKDLISEISNIEEQF 105
[83][TOP]
>UniRef100_UPI000155D3C2 PREDICTED: similar to RNA polymerase II n=1 Tax=Ornithorhynchus
anatinus RepID=UPI000155D3C2
Length = 117
Score = 65.1 bits (157), Expect = 4e-09
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VL YK+PHPL++KIIIR+ TT SP +A+ +I DL EL L+ F
Sbjct: 46 IKSQLLKDPQVLLQEYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
Query: 402 EAEL 391
+
Sbjct: 106 RVAI 109
[84][TOP]
>UniRef100_A6YPS3 DNA-directed RNA polymerase II 13.3 kDa polypeptide n=1
Tax=Triatoma infestans RepID=A6YPS3_TRIIF
Length = 117
Score = 65.1 bits (157), Expect = 4e-09
Identities = 33/70 (47%), Positives = 43/70 (61%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL KDP VLFAGYK+PHPL K +IRI TT+ +P +I DL EL + F
Sbjct: 46 IRNQLLKDPKVLFAGYKVPHPLDPKFVIRIQTTNDETPQSVLKNAITDLISELSLFEERF 105
Query: 402 EAELLKFSKD 373
+ E +K K+
Sbjct: 106 K-EAIKDKKE 114
[85][TOP]
>UniRef100_B4I598 GM17133 n=1 Tax=Drosophila sechellia RepID=B4I598_DROSE
Length = 105
Score = 64.7 bits (156), Expect = 5e-09
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDL 436
+R QL KD NVLFAGYK+PHPL++K +IRI TT+ SP +A+ +I DL
Sbjct: 46 IRNQLLKDHNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDL 94
[86][TOP]
>UniRef100_A8PTP7 RNA polymerase II., putative n=1 Tax=Brugia malayi
RepID=A8PTP7_BRUMA
Length = 133
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/57 (52%), Positives = 38/57 (66%)
Frame = -1
Query: 573 QLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
QL KDP VLFAGYK PHPL++K I+R+ TTS ++P A +I DL EL + F
Sbjct: 65 QLLKDPQVLFAGYKCPHPLEHKFILRVQTTSDTTPEDALTSAITDLMAELSLFEERF 121
[87][TOP]
>UniRef100_UPI0000E21436 PREDICTED: similar to MGC13098 protein n=1 Tax=Pan troglodytes
RepID=UPI0000E21436
Length = 398
Score = 63.9 bits (154), Expect = 9e-09
Identities = 32/60 (53%), Positives = 39/60 (65%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
++ QL KDP VLFAGYK+PHPL+ KIII TT SP +A +I DL EL L+ F
Sbjct: 285 IKSQLLKDPQVLFAGYKVPHPLERKIIIEXQTTPDYSPQEALPNAIADLISELSLLEERF 344
[88][TOP]
>UniRef100_UPI0001792BF8 PREDICTED: similar to GA19897-PA n=1 Tax=Acyrthosiphon pisum
RepID=UPI0001792BF8
Length = 119
Score = 63.5 bits (153), Expect = 1e-08
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTT-SQSSPMQAYNQSINDLDKELDTLKSG 406
+R QL KDPNVLFAGYKLPHPL++K +RI T+ + +P A S+ DL EL +
Sbjct: 46 IRNQLLKDPNVLFAGYKLPHPLEHKFELRIQTSCPEYTPQDALTNSLTDLLAELSLFEER 105
Query: 405 FEAELLKFSKD 373
F+ + LK KD
Sbjct: 106 FK-DALKQKKD 115
[89][TOP]
>UniRef100_Q01GZ2 RPB11_CAEEL Probable DNA-directed RNA polymerase II 13.3 kDa
polypeptide (ISS) n=1 Tax=Ostreococcus tauri
RepID=Q01GZ2_OSTTA
Length = 230
Score = 62.0 bits (149), Expect = 3e-08
Identities = 23/61 (37%), Positives = 43/61 (70%)
Frame = -1
Query: 573 QLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAE 394
+LHK+P+V+FAGYK PHP +++I+++HT + ++P+QA ++ +L E+ + F E
Sbjct: 20 ELHKNPDVVFAGYKNPHPTDHRVILKVHTNANTTPVQALRDAVTNLRAEVSDIAQQFADE 79
Query: 393 L 391
+
Sbjct: 80 I 80
[90][TOP]
>UniRef100_Q86JJ5 DNA-directed RNA polymerase II subunit rpb11 n=1 Tax=Dictyostelium
discoideum RepID=RPB11_DICDI
Length = 120
Score = 60.1 bits (144), Expect = 1e-07
Identities = 24/66 (36%), Positives = 46/66 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+RMQL D +++FAGY++PHPL++ + IRI T + ++P++ +S+ L +E +L++ F
Sbjct: 46 IRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSF 105
Query: 402 EAELLK 385
++ K
Sbjct: 106 IEQVQK 111
[91][TOP]
>UniRef100_Q5KMB4 DNA-directed RNA polymerase ii 13.3 kDa polypeptide, putative n=1
Tax=Filobasidiella neoformans RepID=Q5KMB4_CRYNE
Length = 162
Score = 58.9 bits (141), Expect = 3e-07
Identities = 26/63 (41%), Positives = 44/63 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL DP VLFAGYK+PHPL+ I+++I T +S+P +A ++ ++L ++ +K+ F
Sbjct: 46 LRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNPAEALKRACHELIRQTVHIKAQF 105
Query: 402 EAE 394
+ +
Sbjct: 106 QQQ 108
[92][TOP]
>UniRef100_C4LXS9 RNA polymerases II subunit, putative n=1 Tax=Entamoeba histolytica
HM-1:IMSS RepID=C4LXS9_ENTHI
Length = 112
Score = 58.5 bits (140), Expect = 4e-07
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR+ L ++P+VLFAGY+ PHPL Y I + I T +P QA Q+++D+ E++ +++ F
Sbjct: 43 LRVMLLRNPHVLFAGYRQPHPLNYVIEMTIRTDMTITPKQALEQAMDDVIHEIEIMQNEF 102
Query: 402 EA 397
EA
Sbjct: 103 EA 104
[93][TOP]
>UniRef100_C5LKR8 DNA-directed RNA polymerase II, putative n=1 Tax=Perkinsus marinus
ATCC 50983 RepID=C5LKR8_9ALVE
Length = 149
Score = 58.2 bits (139), Expect = 5e-07
Identities = 25/64 (39%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR +L ++ V FAGYK+PHPL+ K+++R+ TSQ++P++A +++ L + D L+ F
Sbjct: 63 LRSELLRNRQVKFAGYKVPHPLENKLLMRVQVTSQTTPVEAMKEALKSLRSKGDQLEKEF 122
Query: 402 EAEL 391
+ L
Sbjct: 123 DRSL 126
[94][TOP]
>UniRef100_C5KDT1 DNA-directed RNA polymerase II, putative n=1 Tax=Perkinsus marinus
ATCC 50983 RepID=C5KDT1_9ALVE
Length = 149
Score = 58.2 bits (139), Expect = 5e-07
Identities = 25/64 (39%), Positives = 44/64 (68%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR +L ++ V FAGYK+PHPL+ K+++R+ TSQ++P++A +++ L + D L+ F
Sbjct: 63 LRSELLRNRQVKFAGYKVPHPLENKLLMRVQVTSQTTPVEAMKEALKSLRSKGDQLEKEF 122
Query: 402 EAEL 391
+ L
Sbjct: 123 DRSL 126
[95][TOP]
>UniRef100_A3LX93 RNA polymerase II core subunit n=1 Tax=Pichia stipitis
RepID=A3LX93_PICST
Length = 122
Score = 58.2 bits (139), Expect = 5e-07
Identities = 29/63 (46%), Positives = 38/63 (60%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KDP VLFA YK+ HPL ++RI T SP +A + + L ELD +K+ F
Sbjct: 46 LRAQLLKDPRVLFAAYKVEHPLFANFVLRIQTEDDYSPREALKNACSGLISELDVIKNRF 105
Query: 402 EAE 394
+ E
Sbjct: 106 KDE 108
[96][TOP]
>UniRef100_B0E866 DNA-directed RNA polymerase II subunit RPB11, putative n=1
Tax=Entamoeba dispar SAW760 RepID=B0E866_ENTDI
Length = 112
Score = 57.8 bits (138), Expect = 6e-07
Identities = 26/62 (41%), Positives = 44/62 (70%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR+ L ++P+VLFAGY+ PHPL Y I + I T + +P QA Q+++D+ E++ +++ F
Sbjct: 43 LRVMLLRNPHVLFAGYRQPHPLNYIIEMTIRTDTTITPKQALEQAMDDVIHEIEIMQNEF 102
Query: 402 EA 397
E+
Sbjct: 103 ES 104
[97][TOP]
>UniRef100_B6K818 DNA-directed RNA polymerase II complex subunit Rpb11 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6K818_SCHJY
Length = 123
Score = 57.4 bits (137), Expect = 8e-07
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL D V+FAGY++PHPL + I+R+ TT + SP QA + L L+ LK F
Sbjct: 45 LRTQLLYDERVVFAGYRVPHPLNHNFILRVQTTEECSPKQAIIDASKSLITVLEQLKVNF 104
Query: 402 --EAELLKFSKD 373
E EL K S +
Sbjct: 105 TREWELKKISDE 116
[98][TOP]
>UniRef100_B8C993 Probable dna-directed RNA polymerase II 13.6 kDa polypeptide n=1
Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C993_THAPS
Length = 124
Score = 57.0 bits (136), Expect = 1e-06
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIH-TTSQSSPMQAYNQSINDLDKELDTLKSG 406
LRMQL +DP V FAGY PHPL +KI ++I TTSQ +P + + +I DL E D L +
Sbjct: 46 LRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVAPAETLSAAIEDLSNETDHLLTQ 105
Query: 405 FEAELLKFSKD 373
+ K+ K+
Sbjct: 106 VTDAIDKWKKE 116
[99][TOP]
>UniRef100_A5DVI5 DNA-directed RNA polymerase II 13.6 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5DVI5_LODEL
Length = 121
Score = 56.2 bits (134), Expect = 2e-06
Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KDP V+FA YK+ HPL ++RI T +P +A + N L EL +KS F
Sbjct: 46 LRAQLLKDPRVIFAAYKVEHPLFANFVLRIQTEEDYTPKEALKNACNMLINELGAIKSKF 105
Query: 402 EAE-----LLKFSKDY 370
E LL DY
Sbjct: 106 SEEWALKVLLNNEDDY 121
[100][TOP]
>UniRef100_C4YFG3 DNA-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Candida
albicans RepID=C4YFG3_CANAL
Length = 124
Score = 55.8 bits (133), Expect = 2e-06
Identities = 29/63 (46%), Positives = 36/63 (57%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KD VLFA YK+ HPL ++RI T SP +A + + L ELD +KS F
Sbjct: 46 LRAQLLKDDRVLFAAYKVEHPLFANFVLRIQTEDDYSPREALQNACSGLISELDVIKSKF 105
Query: 402 EAE 394
E
Sbjct: 106 NDE 108
[101][TOP]
>UniRef100_B9W6P5 DNA-directed RNA polymerase II [13.6 kDa] subunit, putative n=1
Tax=Candida dubliniensis CD36 RepID=B9W6P5_CANDC
Length = 124
Score = 55.8 bits (133), Expect = 2e-06
Identities = 28/63 (44%), Positives = 36/63 (57%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR QL KD VLFA YK+ HPL ++R+ T SP +A + + L ELD +KS F
Sbjct: 46 LRAQLLKDERVLFAAYKVEHPLFANFVLRVQTEDDYSPREALQNACSSLISELDVIKSKF 105
Query: 402 EAE 394
E
Sbjct: 106 NDE 108
[102][TOP]
>UniRef100_C5FYD6 DNA-directed RNA polymerase II subunit RPB11 n=1 Tax=Microsporum
canis CBS 113480 RepID=C5FYD6_NANOT
Length = 161
Score = 55.1 bits (131), Expect = 4e-06
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R +L + +VLFAGYK+PHPL +K+++R+ T Q +P A + ++L K+L T F
Sbjct: 79 IRARLLQSQHVLFAGYKIPHPLVHKVLLRVQTDGQITPKDAVLTACHELVKDLGTFSREF 138
Query: 402 EAE 394
E
Sbjct: 139 TKE 141
[103][TOP]
>UniRef100_A3FPR0 RNA polymerase II, putative n=1 Tax=Cryptosporidium parvum Iowa II
RepID=A3FPR0_CRYPV
Length = 115
Score = 54.7 bits (130), Expect = 5e-06
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = -1
Query: 573 QLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAE 394
QL +DPNV+FAGYK+PHPL+ + IRI T ++P A +I + E + + F+
Sbjct: 48 QLLRDPNVIFAGYKVPHPLEPLVQIRIQTRENTTPFVAIQNAIKSIQMESQVILNSFKDS 107
Query: 393 LLKF 382
+ +
Sbjct: 108 MRNY 111
[104][TOP]
>UniRef100_Q1DQC2 DNA-directed RNA polymerase II n=1 Tax=Coccidioides immitis
RepID=Q1DQC2_COCIM
Length = 128
Score = 54.3 bits (129), Expect = 7e-06
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL K +V FAGYK+PHPL +K I+R+ T +P A + ++L K+L TL F
Sbjct: 46 IRAQLLKSQHVQFAGYKVPHPLVHKFILRVQTDGAITPKDAVLTACHELVKDLGTLSREF 105
Query: 402 EAE 394
E
Sbjct: 106 TKE 108
[105][TOP]
>UniRef100_C5PBJ9 RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
n=1 Tax=Coccidioides posadasii C735 delta SOWgp
RepID=C5PBJ9_COCP7
Length = 128
Score = 54.3 bits (129), Expect = 7e-06
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
+R QL K +V FAGYK+PHPL +K I+R+ T +P A + ++L K+L TL F
Sbjct: 46 IRSQLLKSQHVQFAGYKVPHPLVHKFILRVQTDGAITPKDAVLTACHELVKDLGTLSREF 105
Query: 402 EAE 394
E
Sbjct: 106 TKE 108
[106][TOP]
>UniRef100_A1CD73 DNA-directed RNA polymerase II subunit RPB11a, putative n=1
Tax=Aspergillus clavatus RepID=A1CD73_ASPCL
Length = 165
Score = 53.9 bits (128), Expect = 9e-06
Identities = 28/63 (44%), Positives = 38/63 (60%)
Frame = -1
Query: 582 LRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGF 403
LR +L + P+VLFAGYK+PHPL K +RI T + +P A + +DL K+L L F
Sbjct: 82 LRSRLLQSPHVLFAGYKIPHPLVPKFELRIQTDGEVTPKDALLAACHDLVKDLGILSREF 141
Query: 402 EAE 394
E
Sbjct: 142 TKE 144