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[1][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9S0J0_RICCO
Length = 548
Score = 120 bits (300), Expect = 9e-26
Identities = 55/81 (67%), Positives = 73/81 (90%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+KQLMR+HVL++LN L P+ER+IIRLR+G EDG+++SLSEIG +FGLS+ER+ QLE+RA
Sbjct: 468 VAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRA 527
Query: 385 LYRLKKCLVSQGLDAYADKLI 323
LY+LK+CL S GL+AYAD L+
Sbjct: 528 LYKLKQCLASHGLEAYADLLV 548
[2][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
Length = 535
Score = 114 bits (286), Expect = 4e-24
Identities = 55/80 (68%), Positives = 69/80 (86%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+KQLMR+H+ +LN L KERRIIRLRFG EDG+++SLSEIG +FGLS+ER+ QLE+RA
Sbjct: 455 VAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRA 514
Query: 385 LYRLKKCLVSQGLDAYADKL 326
LY+LK+C+ S GLDAYAD L
Sbjct: 515 LYKLKQCVGSHGLDAYADLL 534
[3][TOP]
>UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1
Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH
Length = 487
Score = 113 bits (282), Expect = 1e-23
Identities = 56/81 (69%), Positives = 68/81 (83%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V KQLMR HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RA
Sbjct: 407 VGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRA 466
Query: 385 LYRLKKCLVSQGLDAYADKLI 323
LYRLK+ + S GL AYAD L+
Sbjct: 467 LYRLKQNMNSHGLHAYADLLV 487
[4][TOP]
>UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LD95_ARATH
Length = 547
Score = 113 bits (282), Expect = 1e-23
Identities = 56/81 (69%), Positives = 68/81 (83%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V KQLMR HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RA
Sbjct: 467 VGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRA 526
Query: 385 LYRLKKCLVSQGLDAYADKLI 323
LYRLK+ + S GL AYAD L+
Sbjct: 527 LYRLKQNMNSHGLHAYADLLV 547
[5][TOP]
>UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001983B83
Length = 561
Score = 107 bits (267), Expect = 6e-22
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+KQLMR+HV N+L+ L PKERRIIRLRFG DG R+LSEIG +FG S+ER+ QLE RA
Sbjct: 481 VAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRA 540
Query: 385 LYRLKKCLVSQGLDAYADKLI 323
L++LK+CL S GL++Y D L+
Sbjct: 541 LHKLKQCLSSHGLESYTDLLV 561
[6][TOP]
>UniRef100_A7PT61 Chromosome chr8 scaffold_29, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PT61_VITVI
Length = 284
Score = 107 bits (267), Expect = 6e-22
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+KQLMR+HV N+L+ L PKERRIIRLRFG DG R+LSEIG +FG S+ER+ QLE RA
Sbjct: 204 VAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRA 263
Query: 385 LYRLKKCLVSQGLDAYADKLI 323
L++LK+CL S GL++Y D L+
Sbjct: 264 LHKLKQCLSSHGLESYTDLLV 284
[7][TOP]
>UniRef100_Q84LK8 Os08g0242800 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84LK8_ORYSJ
Length = 572
Score = 80.5 bits (197), Expect = 8e-14
Identities = 40/80 (50%), Positives = 54/80 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V + +MR+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRA
Sbjct: 492 VDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRA 551
Query: 385 LYRLKKCLVSQGLDAYADKL 326
L +LK+ QG D Y D L
Sbjct: 552 LEKLKRSASLQGFDVYFDLL 571
[8][TOP]
>UniRef100_B8BC85 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BC85_ORYSI
Length = 537
Score = 80.5 bits (197), Expect = 8e-14
Identities = 40/80 (50%), Positives = 54/80 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V + +MR+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRA
Sbjct: 457 VDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRA 516
Query: 385 LYRLKKCLVSQGLDAYADKL 326
L +LK+ QG D Y D L
Sbjct: 517 LEKLKRSASLQGFDVYFDLL 536
[9][TOP]
>UniRef100_A3BR19 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BR19_ORYSJ
Length = 497
Score = 80.5 bits (197), Expect = 8e-14
Identities = 40/80 (50%), Positives = 54/80 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V + +MR+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRA
Sbjct: 417 VDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRA 476
Query: 385 LYRLKKCLVSQGLDAYADKL 326
L +LK+ QG D Y D L
Sbjct: 477 LEKLKRSASLQGFDVYFDLL 496
[10][TOP]
>UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L1K5_THERP
Length = 340
Score = 74.7 bits (182), Expect = 4e-12
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
+ LMRR + +L L P+ER +++LR+G DGE R+L+E+G++ G+SRER+ Q+EN AL
Sbjct: 264 ESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALR 323
Query: 379 RLKKCLVSQGLDAYA 335
+L++ + + YA
Sbjct: 324 KLRRIARERLAEYYA 338
[11][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 73.9 bits (180), Expect = 8e-12
Identities = 35/78 (44%), Positives = 54/78 (69%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
+ KQLMR+ + VL L P+ER ++RLRFG +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 496 IVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKA 555
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L++ + L Y D
Sbjct: 556 MRKLRQPSRNSILREYLD 573
[12][TOP]
>UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CIZ0_9CHLR
Length = 390
Score = 73.6 bits (179), Expect = 1e-11
Identities = 36/77 (46%), Positives = 53/77 (68%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S++L++ + + L+KL +ERRII LRFG EDG+ R+L E+G FG++RERI Q+E +AL
Sbjct: 314 SQELLKHQISDALSKLTERERRIIILRFGLEDGQFRTLEEVGREFGITRERIRQIEAKAL 373
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S L Y D
Sbjct: 374 RKLRHPTYSHRLRGYLD 390
[13][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NG03_ROSCS
Length = 541
Score = 73.2 bits (178), Expect = 1e-11
Identities = 35/77 (45%), Positives = 54/77 (70%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S Q++R V VLN+L +ERR+++LRFG EDG R+L E+G+ FG++RERI Q+E +AL
Sbjct: 465 SHQMLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKAL 524
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ + + L Y +
Sbjct: 525 RKLRHPRLGKKLRDYLE 541
[14][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UQ16_ROSS1
Length = 541
Score = 73.2 bits (178), Expect = 1e-11
Identities = 35/77 (45%), Positives = 54/77 (70%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S Q++R V VLN+L +ERR+++LRFG EDG R+L E+G+ FG++RERI Q+E +AL
Sbjct: 465 SHQMLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKAL 524
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ + + L Y +
Sbjct: 525 RKLRHPRLGKKLRDYLE 541
[15][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 72.8 bits (177), Expect = 2e-11
Identities = 35/77 (45%), Positives = 53/77 (68%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S L+R + VLN L P+E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL
Sbjct: 285 SFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKAL 344
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L Y +
Sbjct: 345 RKLRHPSRSKKLKDYLE 361
[16][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 72.8 bits (177), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + +VLN L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 309 VSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 368
Query: 385 LYRLK 371
L +L+
Sbjct: 369 LRKLR 373
[17][TOP]
>UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
M21/2 RepID=A8SFN0_9FIRM
Length = 360
Score = 72.8 bits (177), Expect = 2e-11
Identities = 35/77 (45%), Positives = 54/77 (70%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
+QL+RR +L+VL L P+E R+I LRFG EDG R+L E+G+ F ++RER+ Q+E +AL
Sbjct: 284 RQLLRRELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKALR 343
Query: 379 RLKKCLVSQGLDAYADK 329
+L+ ++ L Y D+
Sbjct: 344 KLRHPSRAKLLRDYLDE 360
[18][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 72.4 bits (176), Expect = 2e-11
Identities = 35/74 (47%), Positives = 50/74 (67%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
KQ MR + VLN L P+E+++IR R+G EDG ++L EIGE+ G+SRERI Q+E+ A
Sbjct: 502 KQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFR 561
Query: 379 RLKKCLVSQGLDAY 338
+LK ++ L Y
Sbjct: 562 KLKNKRRTKHLQQY 575
[19][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 299 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 358
Query: 385 LYRLK 371
L +L+
Sbjct: 359 LRKLR 363
[20][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398
Query: 385 LYRLK 371
L +L+
Sbjct: 399 LRKLR 403
[21][TOP]
>UniRef100_B1VYB1 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp.
griseus NBRC 13350 RepID=B1VYB1_STRGG
Length = 363
Score = 72.4 bits (176), Expect = 2e-11
Identities = 34/74 (45%), Positives = 51/74 (68%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G EDG R+L EIG IFG++RERI Q+E++ L RL
Sbjct: 290 LLREHLEAVLSTLGERERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRL 349
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 350 RDHAFADQLRGYLD 363
[22][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398
Query: 385 LYRLK 371
L +L+
Sbjct: 399 LRKLR 403
[23][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 337 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 396
Query: 385 LYRLK 371
L +L+
Sbjct: 397 LRKLR 401
[24][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 302 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 361
Query: 385 LYRLK 371
L +L+
Sbjct: 362 LRKLR 366
[25][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 300 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 359
Query: 385 LYRLK 371
L +L+
Sbjct: 360 LRKLR 364
[26][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398
Query: 385 LYRLK 371
L +L+
Sbjct: 399 LRKLR 403
[27][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398
Query: 385 LYRLK 371
L +L+
Sbjct: 399 LRKLR 403
[28][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398
Query: 385 LYRLK 371
L +L+
Sbjct: 399 LRKLR 403
[29][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 72.4 bits (176), Expect = 2e-11
Identities = 34/74 (45%), Positives = 52/74 (70%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
K L++ + NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL
Sbjct: 440 KSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALR 499
Query: 379 RLKKCLVSQGLDAY 338
+LK+ +Q L Y
Sbjct: 500 KLKQPSRNQVLQEY 513
[30][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 72.4 bits (176), Expect = 2e-11
Identities = 35/74 (47%), Positives = 50/74 (67%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
KQ MR + VLN L P+E+++IR R+G EDG ++L EIGE+ G+SRERI Q+E+ A
Sbjct: 159 KQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFR 218
Query: 379 RLKKCLVSQGLDAY 338
+LK ++ L Y
Sbjct: 219 KLKNKRRTKHLQQY 232
[31][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 348 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 407
Query: 385 LYRLK 371
L +L+
Sbjct: 408 LRKLR 412
[32][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 72.4 bits (176), Expect = 2e-11
Identities = 33/65 (50%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398
Query: 385 LYRLK 371
L +L+
Sbjct: 399 LRKLR 403
[33][TOP]
>UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195
RepID=Q3Z904_DEHE1
Length = 520
Score = 72.0 bits (175), Expect = 3e-11
Identities = 34/77 (44%), Positives = 53/77 (68%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S+QL++ + VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L Y +
Sbjct: 504 RKLRHPSRSRKLKDYLE 520
[34][TOP]
>UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9KZ85_THERP
Length = 369
Score = 72.0 bits (175), Expect = 3e-11
Identities = 36/77 (46%), Positives = 54/77 (70%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S+QL+R+ + L++L +ERRII LR+G EDG+ R+L E+G FG++RERI Q+E +AL
Sbjct: 293 SQQLLRQQLEEALSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKAL 352
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L Y D
Sbjct: 353 RKLRHPSCSRFLRGYLD 369
[35][TOP]
>UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides
RepID=A5FRQ7_DEHSB
Length = 520
Score = 72.0 bits (175), Expect = 3e-11
Identities = 34/77 (44%), Positives = 53/77 (68%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S+QL++ + VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L Y +
Sbjct: 504 RKLRHPSRSRKLKDYLE 520
[36][TOP]
>UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS
RepID=A8CRQ1_9CHLR
Length = 520
Score = 72.0 bits (175), Expect = 3e-11
Identities = 34/77 (44%), Positives = 53/77 (68%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S+QL++ + VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L Y +
Sbjct: 504 RKLRHPSRSRKLKDYLE 520
[37][TOP]
>UniRef100_UPI0001AEF979 putative RNA polymerase principal sigma factor n=1 Tax=Streptomyces
roseosporus NRRL 15998 RepID=UPI0001AEF979
Length = 363
Score = 71.6 bits (174), Expect = 4e-11
Identities = 33/74 (44%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R+H+ VL+ L +ER++++LR+G +DG R+L EIG IFG++RERI Q+E++ L RL
Sbjct: 290 LLRQHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLSRL 349
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 350 RDHAFADQLRGYLD 363
[38][TOP]
>UniRef100_B5GE88 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB74
RepID=B5GE88_9ACTO
Length = 338
Score = 71.6 bits (174), Expect = 4e-11
Identities = 32/74 (43%), Positives = 53/74 (71%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+RRH+ +VL+ L +ER++++LR+G +DG R+L EIG +FG++RERI Q+E + L +L
Sbjct: 265 LLRRHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKL 324
Query: 373 KKCLVSQGLDAYAD 332
+ + + L Y D
Sbjct: 325 RSHVFADQLRGYLD 338
[39][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 71.6 bits (174), Expect = 4e-11
Identities = 35/74 (47%), Positives = 50/74 (67%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
KQ M++ + VLN L P+E +++R RFG EDG ++L EIGEI G+SRERI Q+E+ A
Sbjct: 493 KQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFR 552
Query: 379 RLKKCLVSQGLDAY 338
+LK ++ L Y
Sbjct: 553 KLKNKKRTKQLKQY 566
[40][TOP]
>UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
prausnitzii A2-165 RepID=C7H3D6_9FIRM
Length = 359
Score = 71.2 bits (173), Expect = 5e-11
Identities = 31/63 (49%), Positives = 48/63 (76%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
++L+RR + NVL L P+E R++ LRFG EDG+ R+L E+G+ F ++RERI Q+E +AL
Sbjct: 283 RELLRRELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALR 342
Query: 379 RLK 371
+L+
Sbjct: 343 KLR 345
[41][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 71.2 bits (173), Expect = 5e-11
Identities = 31/75 (41%), Positives = 54/75 (72%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL L P+E++++ LRFG EDG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 298 ELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRK 357
Query: 376 LKKCLVSQGLDAYAD 332
L+ + S+ L Y +
Sbjct: 358 LRHPMRSKRLKDYLE 372
[42][TOP]
>UniRef100_UPI0001B55E40 RNA polymerase principal sigma factor n=1 Tax=Streptomyces sp.
SPB78 RepID=UPI0001B55E40
Length = 201
Score = 70.9 bits (172), Expect = 6e-11
Identities = 32/74 (43%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+RRH+ +VL+ L +ER++++LR+G +DG R+L EIG +FG++RERI Q+E + L +L
Sbjct: 128 LLRRHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKL 187
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 188 RSHAFADQLRGYLD 201
[43][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 70.9 bits (172), Expect = 6e-11
Identities = 32/75 (42%), Positives = 55/75 (73%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + VL+ L P+E++++RLRFG +DG+ R+L E+G+ FG++RERI Q+E +AL +
Sbjct: 286 ELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRK 345
Query: 376 LKKCLVSQGLDAYAD 332
L+ + S+ L Y D
Sbjct: 346 LRHPMRSKRLKDYLD 360
[44][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 70.9 bits (172), Expect = 6e-11
Identities = 31/64 (48%), Positives = 50/64 (78%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S Q++R V VL++L +E+R+++LRFG EDG +R+L E+G+ FG++RERI Q+E +AL
Sbjct: 324 SHQMLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKAL 383
Query: 382 YRLK 371
+L+
Sbjct: 384 RKLR 387
[45][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 70.5 bits (171), Expect = 8e-11
Identities = 32/65 (49%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 312 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 371
Query: 385 LYRLK 371
L +L+
Sbjct: 372 LRKLR 376
[46][TOP]
>UniRef100_A4X4X9 RNA polymerase sigma factor n=1 Tax=Salinispora tropica CNB-440
RepID=A4X4X9_SALTO
Length = 332
Score = 70.5 bits (171), Expect = 8e-11
Identities = 36/77 (46%), Positives = 52/77 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS +R+ + VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E
Sbjct: 255 VSGGELRQEMCGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGT 314
Query: 385 LYRLKKCLVSQGLDAYA 335
L++L+ +Q L+AYA
Sbjct: 315 LHKLRAPERAQRLEAYA 331
[47][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 70.5 bits (171), Expect = 8e-11
Identities = 32/65 (49%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + +VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 310 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 369
Query: 385 LYRLK 371
L +L+
Sbjct: 370 LRKLR 374
[48][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 70.5 bits (171), Expect = 8e-11
Identities = 32/65 (49%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + +VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 327 VSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 386
Query: 385 LYRLK 371
L +L+
Sbjct: 387 LRKLR 391
[49][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 70.5 bits (171), Expect = 8e-11
Identities = 32/65 (49%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + +VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 303 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 362
Query: 385 LYRLK 371
L +L+
Sbjct: 363 LRKLR 367
[50][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 70.5 bits (171), Expect = 8e-11
Identities = 32/65 (49%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 314 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 373
Query: 385 LYRLK 371
L +L+
Sbjct: 374 LRKLR 378
[51][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 70.5 bits (171), Expect = 8e-11
Identities = 32/65 (49%), Positives = 50/65 (76%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + +VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 314 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 373
Query: 385 LYRLK 371
L +L+
Sbjct: 374 LRKLR 378
[52][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 70.5 bits (171), Expect = 8e-11
Identities = 31/64 (48%), Positives = 48/64 (75%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
K L++ + NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL
Sbjct: 254 KSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALR 313
Query: 379 RLKK 368
+LK+
Sbjct: 314 KLKQ 317
[53][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 70.5 bits (171), Expect = 8e-11
Identities = 32/65 (49%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 313 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 372
Query: 385 LYRLK 371
L +L+
Sbjct: 373 LRKLR 377
[54][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 70.1 bits (170), Expect = 1e-10
Identities = 33/78 (42%), Positives = 55/78 (70%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK+L ++ + VL+ L +E++++RLR+G +DG +SL E+GE F LSRER+ Q+E +A
Sbjct: 417 VSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKA 476
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L++ +Q L Y D
Sbjct: 477 MRKLRQNHRTQHLKHYLD 494
[55][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 70.1 bits (170), Expect = 1e-10
Identities = 33/78 (42%), Positives = 55/78 (70%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK+L ++ + VL+ L +E++++RLR+G +DG +SL E+GE F LSRER+ Q+E +A
Sbjct: 514 VSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKA 573
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L++ +Q L Y D
Sbjct: 574 MRKLRQNHRTQHLKHYLD 591
[56][TOP]
>UniRef100_UPI0001AEE245 RNA polymerase sigma factor n=1 Tax=Streptomyces albus J1074
RepID=UPI0001AEE245
Length = 357
Score = 69.7 bits (169), Expect = 1e-10
Identities = 31/74 (41%), Positives = 53/74 (71%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R+H+ VL L +ER++++LR+GF+DG R+L EIG +FG++RER+ Q+E++ L RL
Sbjct: 284 LLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRL 343
Query: 373 KKCLVSQGLDAYAD 332
++ + L Y +
Sbjct: 344 REHTAAGQLRGYLE 357
[57][TOP]
>UniRef100_O67437 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
RepID=O67437_AQUAE
Length = 310
Score = 69.7 bits (169), Expect = 1e-10
Identities = 33/73 (45%), Positives = 53/73 (72%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V ++++++ + ++L+KL KER++I LRFG + E ++L EIGEI GLSRER+ QLE RA
Sbjct: 233 VIQEVIQKEIDDLLSKLTDKERKVIELRFGLKGNEPKTLREIGEILGLSRERVRQLETRA 292
Query: 385 LYRLKKCLVSQGL 347
L +L+ + + L
Sbjct: 293 LRKLRSLAMKRHL 305
[58][TOP]
>UniRef100_Q9R5W0 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus
RepID=Q9R5W0_STRGR
Length = 357
Score = 69.7 bits (169), Expect = 1e-10
Identities = 31/74 (41%), Positives = 53/74 (71%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R+H+ VL L +ER++++LR+GF+DG R+L EIG +FG++RER+ Q+E++ L RL
Sbjct: 284 LLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRL 343
Query: 373 KKCLVSQGLDAYAD 332
++ + L Y +
Sbjct: 344 REHTAAGQLRGYLE 357
[59][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 69.7 bits (169), Expect = 1e-10
Identities = 31/75 (41%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
++++ +L +LN L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +
Sbjct: 304 RMLKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRK 363
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L Y D
Sbjct: 364 LRHPSRSKKLKDYLD 378
[60][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
RepID=Q0SRH3_CLOPS
Length = 366
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 353 RHPSRSKKLKDYLD 366
[61][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 353 RHPSRSKKLKDYLD 366
[62][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/65 (47%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VLN L P+ER ++RLR+G +DG ++L EIG++F ++RERI Q+E +A
Sbjct: 323 VAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 382
Query: 385 LYRLK 371
L +L+
Sbjct: 383 LRKLR 387
[63][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 51/74 (68%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ + VL L P+E +++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L
Sbjct: 315 LLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKL 374
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y +
Sbjct: 375 RHPSRSKKLKDYLE 388
[64][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 69.3 bits (168), Expect = 2e-10
Identities = 32/65 (49%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + NVL+ L +ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 298 VSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 357
Query: 385 LYRLK 371
L +L+
Sbjct: 358 LRKLR 362
[65][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 69.3 bits (168), Expect = 2e-10
Identities = 32/74 (43%), Positives = 51/74 (68%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ +LN L +E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L
Sbjct: 285 LLREHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKL 344
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y +
Sbjct: 345 RHPSRSKKLKDYIE 358
[66][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
Eklund 17B RepID=B2TMC7_CLOBB
Length = 374
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 301 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 360
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 361 RHPSRSKKLKDYLD 374
[67][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
8052 RepID=A6LRQ7_CLOB8
Length = 376
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 303 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 362
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 363 RHPSRSKKLKDYLD 376
[68][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 281 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 340
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 341 RHPSRSKKLKDYLD 354
[69][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 355 RHPSRSKKLKDYLD 368
[70][TOP]
>UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens
RepID=Q0TNV3_CLOP1
Length = 366
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 353 RHPSRSKKLKDYLD 366
[71][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 288 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 347
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 348 RHPSRSKKLKDYLD 361
[72][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 355 RHPSRSKKLKDYLD 368
[73][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
RepID=B2V2K8_CLOBA
Length = 374
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 301 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 360
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 361 RHPSRSKKLKDYLD 374
[74][TOP]
>UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA
RepID=C1IAB3_9CLOT
Length = 370
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 297 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 356
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 357 RHPSRSKKLKDYLD 370
[75][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
RepID=B1QWY9_CLOBU
Length = 369
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 296 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 355
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 356 RHPSRSKKLKDYLD 369
[76][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 288 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 347
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 348 RHPSRSKKLKDYLD 361
[77][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 355 RHPSRSKKLKDYLD 368
[78][TOP]
>UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas
acidaminovorans RepID=B0VJJ6_9BACT
Length = 579
Score = 69.3 bits (168), Expect = 2e-10
Identities = 31/63 (49%), Positives = 47/63 (74%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
+ L+++ V VL L P+E R+IRLRFG +DG R+L E+G IF ++RERI Q+E++AL
Sbjct: 499 RSLLKKQVDEVLKTLTPREERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALK 558
Query: 379 RLK 371
+L+
Sbjct: 559 KLR 561
[79][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 69.3 bits (168), Expect = 2e-10
Identities = 28/66 (42%), Positives = 50/66 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V K ++R + NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A
Sbjct: 348 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 407
Query: 385 LYRLKK 368
+ +L++
Sbjct: 408 IRKLRQ 413
[80][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 69.3 bits (168), Expect = 2e-10
Identities = 28/66 (42%), Positives = 50/66 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V K ++R + NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A
Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424
Query: 385 LYRLKK 368
+ +L++
Sbjct: 425 IRKLRQ 430
[81][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 69.3 bits (168), Expect = 2e-10
Identities = 28/66 (42%), Positives = 50/66 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V K ++R + NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A
Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424
Query: 385 LYRLKK 368
+ +L++
Sbjct: 425 IRKLRQ 430
[82][TOP]
>UniRef100_UPI0001B56202 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. C
RepID=UPI0001B56202
Length = 381
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 308 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 367
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 368 RDHAFADQLRGYLD 381
[83][TOP]
>UniRef100_UPI0001B51C3A RNA polymerase sigma factor n=1 Tax=Streptomyces viridochromogenes
DSM 40736 RepID=UPI0001B51C3A
Length = 438
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 365 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 424
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 425 RDHAFADQLRGYLD 438
[84][TOP]
>UniRef100_UPI0001B4B283 RNA polymerase sigma factor n=1 Tax=Streptomyces hygroscopicus ATCC
53653 RepID=UPI0001B4B283
Length = 444
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 371 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 430
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 431 RDHAFADQLRGYLD 444
[85][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 68.9 bits (167), Expect = 2e-10
Identities = 31/65 (47%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL+ L P+ER +++LR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 294 VSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 353
Query: 385 LYRLK 371
L +L+
Sbjct: 354 LRKLR 358
[86][TOP]
>UniRef100_C9ZAW9 Principal sigma factor HrdA n=1 Tax=Streptomyces scabiei 87.22
RepID=C9ZAW9_STRSC
Length = 387
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 314 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 373
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 374 RDHAFADQLRGYLD 387
[87][TOP]
>UniRef100_C9N712 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Streptomyces flavogriseus ATCC 33331
RepID=C9N712_9ACTO
Length = 358
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/74 (43%), Positives = 51/74 (68%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G +DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 285 LLREHLEVVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLDKL 344
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 345 RGHAFADQLRGYLD 358
[88][TOP]
>UniRef100_C5RE54 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B
RepID=C5RE54_CLOCL
Length = 363
Score = 68.9 bits (167), Expect = 2e-10
Identities = 31/74 (41%), Positives = 51/74 (68%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ ++NVL+ L P+E +++RLRFG +DG R+L E+G F ++RERI Q+E +AL +L
Sbjct: 290 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKL 349
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 350 RHPSRSKKLKDYLD 363
[89][TOP]
>UniRef100_B5HVY1 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083
RepID=B5HVY1_9ACTO
Length = 374
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 301 LLREHLEAVLSTLGERERKVVQLRYGLADGRARTLEEIGRIFGVTRERIRQIESKTLNKL 360
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 361 RDHAFADQLRGYLD 374
[90][TOP]
>UniRef100_B5GQH3 RNA polymerase sigma factor n=1 Tax=Streptomyces clavuligerus ATCC
27064 RepID=B5GQH3_STRCL
Length = 385
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 312 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 371
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 372 RDHAFADQLRGYLD 385
[91][TOP]
>UniRef100_B4V476 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
RepID=B4V476_9ACTO
Length = 362
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 289 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 348
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 349 RDHAFADQLRGYLD 362
[92][TOP]
>UniRef100_A8UY45 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UY45_9AQUI
Length = 309
Score = 68.9 bits (167), Expect = 2e-10
Identities = 31/73 (42%), Positives = 52/73 (71%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V ++++ + + ++L+KL KERR++ LRFG + E ++L EIG+I G+SRER+ QLE RA
Sbjct: 232 VIQEVLEKEIYDLLDKLPEKERRVVELRFGLKGNEPKTLREIGDILGVSRERVRQLETRA 291
Query: 385 LYRLKKCLVSQGL 347
L +L+ + + L
Sbjct: 292 LRKLRSLAMKRHL 304
[93][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 68.9 bits (167), Expect = 2e-10
Identities = 30/64 (46%), Positives = 48/64 (75%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
K L++ + NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL
Sbjct: 510 KVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALR 569
Query: 379 RLKK 368
+L++
Sbjct: 570 KLRQ 573
[94][TOP]
>UniRef100_UPI0001B4E713 RNA polymerase principal sigma factor n=1 Tax=Streptomyces lividans
TK24 RepID=UPI0001B4E713
Length = 365
Score = 68.6 bits (166), Expect = 3e-10
Identities = 31/74 (41%), Positives = 51/74 (68%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R+H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L
Sbjct: 292 LLRQHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKL 351
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 352 RDHAYADQLRGYLD 365
[95][TOP]
>UniRef100_UPI0001AF1456 RNA polymerase sigma factor n=1 Tax=Streptomyces ghanaensis ATCC
14672 RepID=UPI0001AF1456
Length = 430
Score = 68.6 bits (166), Expect = 3e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 357 LLREHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 416
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 417 RDHAFADQLRGYLD 430
[96][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 68.6 bits (166), Expect = 3e-10
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S +L++ + +VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL
Sbjct: 291 SYELLKEQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKAL 350
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L + D
Sbjct: 351 RKLRHPSRSKRLKDFLD 367
[97][TOP]
>UniRef100_Q82BM5 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis
RepID=Q82BM5_STRAW
Length = 389
Score = 68.6 bits (166), Expect = 3e-10
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 316 LLREHLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 375
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 376 RDHAFADQLRGYLD 389
[98][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
RepID=Q5YT68_NOCFA
Length = 322
Score = 68.6 bits (166), Expect = 3e-10
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+ V +VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L
Sbjct: 249 LLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 308
Query: 373 KKCLVSQGLDAYA 335
+K + L AYA
Sbjct: 309 RKGERADRLRAYA 321
[99][TOP]
>UniRef100_C7GZY7 RNA polymerase sigma factor RpoD n=1 Tax=Eubacterium saphenum ATCC
49989 RepID=C7GZY7_9FIRM
Length = 447
Score = 68.6 bits (166), Expect = 3e-10
Identities = 32/74 (43%), Positives = 53/74 (71%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
++R +L VLN L +ER +++LRFG DG++R+L E+G+ F ++RERI Q+E++A+ +L
Sbjct: 374 MLRDELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKL 433
Query: 373 KKCLVSQGLDAYAD 332
K +S+ L Y D
Sbjct: 434 KHPNMSKKLRDYID 447
[100][TOP]
>UniRef100_C6W8L5 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827
RepID=C6W8L5_ACTMD
Length = 349
Score = 68.6 bits (166), Expect = 3e-10
Identities = 31/78 (39%), Positives = 52/78 (66%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L+ + VL+ L P+E ++R+R+GF DG +L E+G ++G++RERI Q+E+R
Sbjct: 272 VSSALLSADLRAVLDTLTPREAGVVRMRYGFPDGVLHTLEEVGRVYGVTRERIRQIESRT 331
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ S+GL+ Y D
Sbjct: 332 MAKLQHPARSRGLEGYLD 349
[101][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 68.6 bits (166), Expect = 3e-10
Identities = 30/64 (46%), Positives = 48/64 (75%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
K L++ + NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL
Sbjct: 495 KVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALR 554
Query: 379 RLKK 368
+L++
Sbjct: 555 KLRQ 558
[102][TOP]
>UniRef100_P18182 RNA polymerase principal sigma factor hrdA n=1 Tax=Streptomyces
coelicolor RepID=HRDA_STRCO
Length = 396
Score = 68.6 bits (166), Expect = 3e-10
Identities = 31/74 (41%), Positives = 51/74 (68%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R+H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L
Sbjct: 323 LLRQHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKL 382
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 383 RDHAYADQLRGYLD 396
[103][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 319 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 378
Query: 385 LYRLK 371
L +L+
Sbjct: 379 LRKLR 383
[104][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 68.2 bits (165), Expect = 4e-10
Identities = 30/65 (46%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL+ L P+ER ++RLR+G +DG ++L EIG++F ++RERI Q+E +A
Sbjct: 322 VAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 381
Query: 385 LYRLK 371
L +L+
Sbjct: 382 LRKLR 386
[105][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375
Query: 385 LYRLK 371
L +L+
Sbjct: 376 LRKLR 380
[106][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 68.2 bits (165), Expect = 4e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 286 LLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 345
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 346 RHPSRSKKLKDYLD 359
[107][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375
Query: 385 LYRLK 371
L +L+
Sbjct: 376 LRKLR 380
[108][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 317 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 376
Query: 385 LYRLK 371
L +L+
Sbjct: 377 LRKLR 381
[109][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 320 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 379
Query: 385 LYRLK 371
L +L+
Sbjct: 380 LRKLR 384
[110][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 317 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 376
Query: 385 LYRLK 371
L +L+
Sbjct: 377 LRKLR 381
[111][TOP]
>UniRef100_Q8KUI1 RNA polymerase sigma factor n=1 Tax=Actinosynnema pretiosum subsp.
auranticum RepID=Q8KUI1_ACTPA
Length = 348
Score = 68.2 bits (165), Expect = 4e-10
Identities = 31/78 (39%), Positives = 51/78 (65%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L+ + VL L P+E ++R+R+GF DG +L E+G ++G++RERI Q+E+R
Sbjct: 271 VSSALLSADLRAVLETLTPREAGVVRMRYGFPDGVLHTLDEVGRVYGVTRERIRQIESRT 330
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ S+GL+ Y D
Sbjct: 331 MAKLQHPARSRGLEGYLD 348
[112][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 68.2 bits (165), Expect = 4e-10
Identities = 28/62 (45%), Positives = 48/62 (77%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365
Query: 376 LK 371
L+
Sbjct: 366 LR 367
[113][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 68.2 bits (165), Expect = 4e-10
Identities = 28/62 (45%), Positives = 48/62 (77%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 307 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 366
Query: 376 LK 371
L+
Sbjct: 367 LR 368
[114][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 68.2 bits (165), Expect = 4e-10
Identities = 28/62 (45%), Positives = 48/62 (77%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365
Query: 376 LK 371
L+
Sbjct: 366 LR 367
[115][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 68.2 bits (165), Expect = 4e-10
Identities = 28/62 (45%), Positives = 48/62 (77%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365
Query: 376 LK 371
L+
Sbjct: 366 LR 367
[116][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 68.2 bits (165), Expect = 4e-10
Identities = 28/62 (45%), Positives = 48/62 (77%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365
Query: 376 LK 371
L+
Sbjct: 366 LR 367
[117][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/65 (49%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375
Query: 385 LYRLK 371
L +L+
Sbjct: 376 LRKLR 380
[118][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 68.2 bits (165), Expect = 4e-10
Identities = 28/62 (45%), Positives = 48/62 (77%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365
Query: 376 LK 371
L+
Sbjct: 366 LR 367
[119][TOP]
>UniRef100_Q9ZPL0 Sigma factor SIG6 n=1 Tax=Zea mays RepID=Q9ZPL0_MAIZE
Length = 541
Score = 68.2 bits (165), Expect = 4e-10
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNK-LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 389
V + +MR+ V + L L P+E+ II RFG DG+ ++L IG+++GLS+ERI Q++N+
Sbjct: 460 VDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNK 519
Query: 388 ALYRLKKCLVSQGLDAYADKL 326
AL +L+ + +QG Y D L
Sbjct: 520 ALDKLRNSISAQGFHVYFDLL 540
[120][TOP]
>UniRef100_B4FJ30 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FJ30_MAIZE
Length = 541
Score = 68.2 bits (165), Expect = 4e-10
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNK-LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 389
V + +MR+ V + L L P+E+ II RFG DG+ ++L IG+++GLS+ERI Q++N+
Sbjct: 460 VDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNK 519
Query: 388 ALYRLKKCLVSQGLDAYADKL 326
AL +L+ + +QG Y D L
Sbjct: 520 ALDKLRNSISAQGFHVYFDLL 540
[121][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 68.2 bits (165), Expect = 4e-10
Identities = 30/65 (46%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL+ L P+ER ++RLR+G +DG ++L EIG++F ++RERI Q+E +A
Sbjct: 322 VAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 381
Query: 385 LYRLK 371
L +L+
Sbjct: 382 LRKLR 386
[122][TOP]
>UniRef100_UPI0001B4B7AF RNA polymerase sigma factor n=1 Tax=Streptomyces griseoflavus
Tu4000 RepID=UPI0001B4B7AF
Length = 412
Score = 67.8 bits (164), Expect = 5e-10
Identities = 31/74 (41%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L
Sbjct: 339 LLREHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRLFGVTRERIRQIESKTLNKL 398
Query: 373 KKCLVSQGLDAYAD 332
+ + L Y D
Sbjct: 399 RDHAFADQLRGYLD 412
[123][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
Length = 432
Score = 67.8 bits (164), Expect = 5e-10
Identities = 31/76 (40%), Positives = 52/76 (68%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+++R + +VL+ L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +
Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 376 LKKCLVSQGLDAYADK 329
L+ S+ L + D+
Sbjct: 414 LRHPSRSKQLKDFMDE 429
[124][TOP]
>UniRef100_C5D2W5 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D2W5_GEOSW
Length = 831
Score = 67.8 bits (164), Expect = 5e-10
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = -3
Query: 511 PKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 350
P++ +II RFGF GEE +L EIGE+FG+SRERI Q+EN+AL LKKC +G
Sbjct: 775 PRDWKIILYRFGFMTGEEMTLQEIGELFGVSRERIRQIENKALKHLKKCPALKG 828
[125][TOP]
>UniRef100_A8M7Z0 RNA polymerase sigma factor n=1 Tax=Salinispora arenicola CNS-205
RepID=A8M7Z0_SALAI
Length = 328
Score = 67.8 bits (164), Expect = 5e-10
Identities = 35/72 (48%), Positives = 48/72 (66%)
Frame = -3
Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371
+R+ V VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L +L+
Sbjct: 256 LRQEVRGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLRKLR 315
Query: 370 KCLVSQGLDAYA 335
+Q L AYA
Sbjct: 316 APERAQRLAAYA 327
[126][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NGG2_ROSCS
Length = 405
Score = 67.8 bits (164), Expect = 5e-10
Identities = 33/77 (42%), Positives = 49/77 (63%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S ++R + + L KL +ERRII+LR+G DG R+L E+G FG++RERI Q+E R L
Sbjct: 329 SSHILREQIDSALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVL 388
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ +GL Y +
Sbjct: 389 RKLRHPHYGRGLRGYLE 405
[127][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 67.8 bits (164), Expect = 5e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 324 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 383
Query: 385 LYRLK 371
L +L+
Sbjct: 384 LLKLR 388
[128][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 67.8 bits (164), Expect = 5e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 285 LLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 344
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 345 RHPSRSKKLKDYLD 358
[129][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 67.8 bits (164), Expect = 5e-10
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S L++ + +VL+ L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL
Sbjct: 297 SFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 356
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L + D
Sbjct: 357 RKLRHPSRSRKLKDFLD 373
[130][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 67.8 bits (164), Expect = 5e-10
Identities = 33/78 (42%), Positives = 51/78 (65%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
+ QL++ + VL L +E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL
Sbjct: 381 NNQLLKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKAL 440
Query: 382 YRLKKCLVSQGLDAYADK 329
+LK S+ L + DK
Sbjct: 441 RKLKHPTRSKRLRDFVDK 458
[131][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 67.8 bits (164), Expect = 5e-10
Identities = 31/74 (41%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 285 LLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 344
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 345 RHPSRSKKLKDYLD 358
[132][TOP]
>UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149
RepID=C4RDH0_9ACTO
Length = 334
Score = 67.8 bits (164), Expect = 5e-10
Identities = 35/72 (48%), Positives = 48/72 (66%)
Frame = -3
Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371
+R V VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L +L+
Sbjct: 262 LRNEVRIVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTLLKLR 321
Query: 370 KCLVSQGLDAYA 335
+Q L+AYA
Sbjct: 322 APERAQRLEAYA 333
[133][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
Length = 432
Score = 67.8 bits (164), Expect = 5e-10
Identities = 31/76 (40%), Positives = 52/76 (68%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+++R + +VL+ L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +
Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 376 LKKCLVSQGLDAYADK 329
L+ S+ L + D+
Sbjct: 414 LRHPSRSKQLKDFMDE 429
[134][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 67.8 bits (164), Expect = 5e-10
Identities = 28/62 (45%), Positives = 47/62 (75%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
++M++ + NVL+ L +E ++RLRFG +DG R+L E+G +FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 365
Query: 376 LK 371
L+
Sbjct: 366 LR 367
[135][TOP]
>UniRef100_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=1
Tax=Heterosigma akashiwo RepID=A5JEM2_9STRA
Length = 404
Score = 67.8 bits (164), Expect = 5e-10
Identities = 27/61 (44%), Positives = 48/61 (78%)
Frame = -3
Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371
+R+ + ++N L P+E+ ++R+R+G +DGE R+L EIG IF ++RER+ Q+E RAL++L+
Sbjct: 320 LRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIEARALHKLR 379
Query: 370 K 368
+
Sbjct: 380 Q 380
[136][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 67.4 bits (163), Expect = 7e-10
Identities = 32/77 (41%), Positives = 52/77 (67%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S+ L++ + +VL L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL
Sbjct: 288 SQTLLKEQLADVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKAL 347
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L + D
Sbjct: 348 RKLRHPSRSKKLRDFLD 364
[137][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 394 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 453
Query: 385 LYRLK 371
L +L+
Sbjct: 454 LRKLR 458
[138][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 374 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 433
Query: 385 LYRLK 371
L +L+
Sbjct: 434 LRKLR 438
[139][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 358 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 417
Query: 385 LYRLK 371
L +L+
Sbjct: 418 LRKLR 422
[140][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 363 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 422
Query: 385 LYRLK 371
L +L+
Sbjct: 423 LRKLR 427
[141][TOP]
>UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8G4K7_CHLAD
Length = 345
Score = 67.4 bits (163), Expect = 7e-10
Identities = 33/77 (42%), Positives = 49/77 (63%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
+++L+ R + LN+L +ERRII LR+G DG R+L E+G + G++RER Q+E AL
Sbjct: 269 AQKLLHRDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEAL 328
Query: 382 YRLKKCLVSQGLDAYAD 332
RL+ + Q L Y D
Sbjct: 329 RRLRSPEIGQHLRDYLD 345
[142][TOP]
>UniRef100_A9WEI7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WEI7_CHLAA
Length = 345
Score = 67.4 bits (163), Expect = 7e-10
Identities = 33/77 (42%), Positives = 50/77 (64%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
+++L+RR + L++L +ERRII LR+G DG R+L E+G + G++RER Q+E AL
Sbjct: 269 AQKLLRRDLCAALDRLNDRERRIIDLRYGLVDGRRRTLEEVGRVLGMTRERARQIEAEAL 328
Query: 382 YRLKKCLVSQGLDAYAD 332
RL+ V Q L Y +
Sbjct: 329 RRLRSPEVGQHLRDYLE 345
[143][TOP]
>UniRef100_A7NN98 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NN98_ROSCS
Length = 348
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/64 (48%), Positives = 46/64 (71%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S+QL+RR + L++L +ERRII LR+G DG+ R+L E+G + G++RER Q+E AL
Sbjct: 272 SQQLLRRDLAAALDRLNERERRIIDLRYGLVDGQRRTLEEVGRVLGMTRERARQIEAEAL 331
Query: 382 YRLK 371
RL+
Sbjct: 332 RRLR 335
[144][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5V244_ROSS1
Length = 401
Score = 67.4 bits (163), Expect = 7e-10
Identities = 33/77 (42%), Positives = 49/77 (63%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S ++R + + L KL +ERRII+LR+G DG R+L E+G FG++RERI Q+E R L
Sbjct: 325 SHHILREQIDSALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVL 384
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ +GL Y +
Sbjct: 385 RKLRHPHYGRGLRGYLE 401
[145][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 373 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 432
Query: 385 LYRLK 371
L +L+
Sbjct: 433 LRKLR 437
[146][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 374 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 433
Query: 385 LYRLK 371
L +L+
Sbjct: 434 LRKLR 438
[147][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 402 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 461
Query: 385 LYRLK 371
L +L+
Sbjct: 462 LRKLR 466
[148][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 381 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 440
Query: 385 LYRLK 371
L +L+
Sbjct: 441 LRKLR 445
[149][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 67.4 bits (163), Expect = 7e-10
Identities = 32/77 (41%), Positives = 51/77 (66%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S L+R + VL L P+E++++RLRFG +DG R+L E+G+ FG++RERI Q+E + L
Sbjct: 293 SYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 352
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L Y +
Sbjct: 353 RKLRHPSRSKKLKDYLE 369
[150][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/75 (41%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
Q+++ + +VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 304 QMLKEQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 363
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 364 LRHPSRSKQLRDFLD 378
[151][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 426 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 485
Query: 385 LYRLK 371
L +L+
Sbjct: 486 LRKLR 490
[152][TOP]
>UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM
17241 RepID=B0PFC0_9FIRM
Length = 361
Score = 67.4 bits (163), Expect = 7e-10
Identities = 33/77 (42%), Positives = 49/77 (63%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S L+R + VL L P+E +++RLRFG EDG R+L E+G F ++RERI Q+E +AL
Sbjct: 285 SHTLLREQLSEVLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKAL 344
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L + D
Sbjct: 345 RKLRHPSRSKKLKDFLD 361
[153][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 370 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 429
Query: 385 LYRLK 371
L +L+
Sbjct: 430 LRKLR 434
[154][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 379 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 438
Query: 385 LYRLK 371
L +L+
Sbjct: 439 LRKLR 443
[155][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 392 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 451
Query: 385 LYRLK 371
L +L+
Sbjct: 452 LRKLR 456
[156][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 67.4 bits (163), Expect = 7e-10
Identities = 33/76 (43%), Positives = 51/76 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++KQ MR+ + VL+ L +E+++IR RFG EDG ++L EIGE+ G+SRERI Q+E+ A
Sbjct: 497 LTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 556
Query: 385 LYRLKKCLVSQGLDAY 338
+L+ + L Y
Sbjct: 557 FRKLQNKKKTINLQQY 572
[157][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 67.4 bits (163), Expect = 7e-10
Identities = 32/76 (42%), Positives = 53/76 (69%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
+Q++++ V VL L P+ER ++RLRFG +DG+ R+L EIG +F ++RERI Q+E +A+
Sbjct: 512 RQVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMR 571
Query: 379 RLKKCLVSQGLDAYAD 332
+L++ + L Y D
Sbjct: 572 KLRQPSRNGVLREYLD 587
[158][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 383 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 442
Query: 385 LYRLK 371
L +L+
Sbjct: 443 LRKLR 447
[159][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 361 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 420
Query: 385 LYRLK 371
L +L+
Sbjct: 421 LRKLR 425
[160][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 384 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKA 443
Query: 385 LYRLK 371
L +L+
Sbjct: 444 LRKLR 448
[161][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 341 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 400
Query: 385 LYRLK 371
L +L+
Sbjct: 401 LRKLR 405
[162][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 67.0 bits (162), Expect = 9e-10
Identities = 30/65 (46%), Positives = 49/65 (75%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + +VL L P+ER +++LR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 327 VAKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 386
Query: 385 LYRLK 371
L +L+
Sbjct: 387 LRKLR 391
[163][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 348 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 407
Query: 385 LYRLK 371
L +L+
Sbjct: 408 LRKLR 412
[164][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 367 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKA 426
Query: 385 LYRLK 371
L +L+
Sbjct: 427 LRKLR 431
[165][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A
Sbjct: 341 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 400
Query: 385 LYRLK 371
L +L+
Sbjct: 401 LRKLR 405
[166][TOP]
>UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum
RepID=C1F1D9_ACIC5
Length = 597
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/73 (42%), Positives = 49/73 (67%)
Frame = -3
Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371
++ + VL L P+E R+I++RFG EDG E +L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 520 LKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLR 579
Query: 370 KCLVSQGLDAYAD 332
S+ L A+ D
Sbjct: 580 HPSRSRKLRAFVD 592
[167][TOP]
>UniRef100_C0U2T9 RNA polymerase sigma factor n=1 Tax=Geodermatophilus obscurus DSM
43160 RepID=C0U2T9_9ACTO
Length = 429
Score = 67.0 bits (162), Expect = 9e-10
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS LM+ + +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 352 VSFTLMQDQLTSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 411
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ SQ L Y D
Sbjct: 412 MSKLRHPSRSQVLRDYLD 429
[168][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
RepID=B9YB48_9FIRM
Length = 408
Score = 67.0 bits (162), Expect = 9e-10
Identities = 33/78 (42%), Positives = 51/78 (65%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
+ QL++ + NVL L +E +++RLRFG DG R+L E+G+ F ++RERI Q+E +AL
Sbjct: 330 NNQLLKDEINNVLQGLTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKAL 389
Query: 382 YRLKKCLVSQGLDAYADK 329
+LK S+ L + DK
Sbjct: 390 RKLKHPTRSKRLRDFVDK 407
[169][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 66.6 bits (161), Expect = 1e-09
Identities = 30/65 (46%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER +++LR+G +DG ++L EIG++F ++RERI Q+E +A
Sbjct: 341 VSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 400
Query: 385 LYRLK 371
L +L+
Sbjct: 401 LRKLR 405
[170][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V + LM + + ++L L P+ER ++RLR+G DG R+L E+G+ FGL+RERI Q+E RA
Sbjct: 268 VVRDLMNQDLESLLQTLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERIRQIEARA 327
Query: 385 LYRLK 371
L +L+
Sbjct: 328 LRKLR 332
[171][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 66.6 bits (161), Expect = 1e-09
Identities = 30/64 (46%), Positives = 47/64 (73%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S L+R + VL L +E++++RLRFG +DG R+L E+G+IFG++RERI Q+E +AL
Sbjct: 294 SYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKAL 353
Query: 382 YRLK 371
+L+
Sbjct: 354 RKLR 357
[172][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/74 (41%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ + VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L
Sbjct: 294 LLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 353
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y +
Sbjct: 354 RHPSRSKKLKDYLE 367
[173][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 66.6 bits (161), Expect = 1e-09
Identities = 30/65 (46%), Positives = 48/65 (73%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VSK L+R + VL L P+ER +++LR+G +DG ++L EIG++F ++RERI Q+E +A
Sbjct: 301 VSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 360
Query: 385 LYRLK 371
L +L+
Sbjct: 361 LRKLR 365
[174][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/74 (41%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ + VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L
Sbjct: 299 LLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 358
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y +
Sbjct: 359 RHPSRSKKLKDYLE 372
[175][TOP]
>UniRef100_B7K407 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 8801
RepID=B7K407_CYAP8
Length = 328
Score = 66.6 bits (161), Expect = 1e-09
Identities = 28/66 (42%), Positives = 53/66 (80%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L +L++
Sbjct: 311 LAQLRR 316
[176][TOP]
>UniRef100_B1WQ73 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQ73_CYAA5
Length = 328
Score = 66.6 bits (161), Expect = 1e-09
Identities = 28/66 (42%), Positives = 53/66 (80%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L +L++
Sbjct: 311 LAQLRR 316
[177][TOP]
>UniRef100_B0JU57 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JU57_MICAN
Length = 328
Score = 66.6 bits (161), Expect = 1e-09
Identities = 29/66 (43%), Positives = 51/66 (77%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++L+R+ + N+L +L P++R +I LRFG DG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L L++
Sbjct: 311 LAHLRR 316
[178][TOP]
>UniRef100_A5UXX4 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UXX4_ROSS1
Length = 349
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S QL+RR + L++L +ERRII LR+G DG+ R+L E+G + G++RER Q+E AL
Sbjct: 273 SHQLLRRDLAAALDRLNERERRIIDLRYGLVDGQRRTLEEVGRVLGMTRERARQIEAEAL 332
Query: 382 YRLK 371
RL+
Sbjct: 333 RRLR 336
[179][TOP]
>UniRef100_Q4BYC5 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4BYC5_CROWT
Length = 328
Score = 66.6 bits (161), Expect = 1e-09
Identities = 28/66 (42%), Positives = 53/66 (80%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLRNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRMNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L +L++
Sbjct: 311 LAQLRR 316
[180][TOP]
>UniRef100_C7QM79 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 8802 RepID=C7QM79_CYAP0
Length = 328
Score = 66.6 bits (161), Expect = 1e-09
Identities = 28/66 (42%), Positives = 53/66 (80%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L +L++
Sbjct: 311 LAQLRR 316
[181][TOP]
>UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
20162 RepID=C2APA0_TSUPA
Length = 330
Score = 66.6 bits (161), Expect = 1e-09
Identities = 33/77 (42%), Positives = 51/77 (66%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V LM V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E
Sbjct: 253 VISTLMHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREV 312
Query: 385 LYRLKKCLVSQGLDAYA 335
+ +L+ + L AYA
Sbjct: 313 MSKLRNGERADRLRAYA 329
[182][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
RepID=B0MPW5_9FIRM
Length = 358
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S+ L++ + +L L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL
Sbjct: 282 SRTLLKEQLSEILGTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKAL 341
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S+ L + D
Sbjct: 342 RKLRHPSRSKKLKDFLD 358
[183][TOP]
>UniRef100_A8YCV8 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCV8_MICAE
Length = 328
Score = 66.6 bits (161), Expect = 1e-09
Identities = 29/66 (43%), Positives = 51/66 (77%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++L+R+ + N+L +L P++R +I LRFG DG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L L++
Sbjct: 311 LAHLRR 316
[184][TOP]
>UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753
RepID=A7VZA6_9CLOT
Length = 365
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/74 (41%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ + VL+ L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 292 LLKEQLAEVLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKL 351
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L + D
Sbjct: 352 RHPSRSKKLKDFLD 365
[185][TOP]
>UniRef100_A3IZB7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IZB7_9CHRO
Length = 328
Score = 66.6 bits (161), Expect = 1e-09
Identities = 28/66 (42%), Positives = 53/66 (80%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L +L++
Sbjct: 311 LAQLRR 316
[186][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 66.6 bits (161), Expect = 1e-09
Identities = 29/64 (45%), Positives = 46/64 (71%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S L++ + VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL
Sbjct: 292 SFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKAL 351
Query: 382 YRLK 371
+L+
Sbjct: 352 RKLR 355
[187][TOP]
>UniRef100_A0ZN70 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZN70_NODSP
Length = 327
Score = 66.6 bits (161), Expect = 1e-09
Identities = 29/65 (44%), Positives = 50/65 (76%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
+++ +R+ + N+L +L P++R+++ LRFG EDG E SL+++GE LSRER+ QLE++AL
Sbjct: 252 TQEFLRQDLNNLLAELTPQQRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQAL 311
Query: 382 YRLKK 368
L++
Sbjct: 312 AHLRR 316
[188][TOP]
>UniRef100_A0YXP5 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YXP5_9CYAN
Length = 333
Score = 66.6 bits (161), Expect = 1e-09
Identities = 29/66 (43%), Positives = 51/66 (77%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V+ +L+R+ + +++++L P++R +I LR+G EDG+E SLS++G +SRER+ QLEN+A
Sbjct: 257 VTHELLRQDLKSLIDELTPQQREVILLRYGLEDGKELSLSKVGARMSISRERVRQLENQA 316
Query: 385 LYRLKK 368
L L++
Sbjct: 317 LNHLRR 322
[189][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/63 (49%), Positives = 44/63 (69%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
K+ M++ + VL L P+E ++IR RFG EDG ++L EIGE+ G+SRERI Q+E A
Sbjct: 488 KEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFR 547
Query: 379 RLK 371
+LK
Sbjct: 548 KLK 550
[190][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 66.6 bits (161), Expect = 1e-09
Identities = 29/63 (46%), Positives = 44/63 (69%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
K+ M++ + VL L P+E +++R RFG EDG ++L EIGE+ G+SRER+ Q+E A
Sbjct: 491 KEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFR 550
Query: 379 RLK 371
+LK
Sbjct: 551 KLK 553
[191][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 66.2 bits (160), Expect = 2e-09
Identities = 28/62 (45%), Positives = 46/62 (74%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 242 ELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRK 301
Query: 376 LK 371
L+
Sbjct: 302 LR 303
[192][TOP]
>UniRef100_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata
obscuriglobus UQM 2246 RepID=UPI00016C4C50
Length = 521
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/78 (39%), Positives = 50/78 (64%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V L++ + VL L P+ER +I LRFG +DG ++L E+ + +G++RERI Q+E R
Sbjct: 440 VDANLLKERIGEVLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARG 499
Query: 385 LYRLKKCLVSQGLDAYAD 332
L +L++ S L+ +AD
Sbjct: 500 LLKLRQPTRSCRLEEFAD 517
[193][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 366 LRHPSRSKRLKDFLD 380
[194][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S +L++ + VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL
Sbjct: 296 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S L + D
Sbjct: 356 RKLRHPSRSNQLKDFLD 372
[195][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 299 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 358
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 359 LRHPSRSKRLKDFLD 373
[196][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[197][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[198][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 290 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 349
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 350 LRHPSRSKRLKDFLD 364
[199][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 292 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 351
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 352 LRHPSRSKRLKDFMD 366
[200][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 295 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 354
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 355 LRHPSRSKRLKDFMD 369
[201][TOP]
>UniRef100_B2J7M4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2J7M4_NOSP7
Length = 327
Score = 66.2 bits (160), Expect = 2e-09
Identities = 29/65 (44%), Positives = 49/65 (75%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
+++ +R+ + N+L +L P++R ++ LRFG EDG E SL+++GE LSRER+ QLE++AL
Sbjct: 252 NQEFLRQDLNNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQAL 311
Query: 382 YRLKK 368
L++
Sbjct: 312 AHLRR 316
[202][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 287 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 346
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 347 LRHPSRSKRLKDFLD 361
[203][TOP]
>UniRef100_B1MYH4 RNA polymerase sigma factor n=1 Tax=Leuconostoc citreum KM20
RepID=B1MYH4_LEUCK
Length = 432
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/75 (41%), Positives = 50/75 (66%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+++R + +VL L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +
Sbjct: 354 EMLRDQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 414 LRHPSRSKQLKDFMD 428
[204][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
audaxviator MP104C RepID=B1I1U1_DESAP
Length = 360
Score = 66.2 bits (160), Expect = 2e-09
Identities = 32/74 (43%), Positives = 50/74 (67%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R + +VL L +E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L
Sbjct: 287 LLREQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKL 346
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 347 RHPSRSKKLKDYLD 360
[205][TOP]
>UniRef100_A9WI86 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WI86_CHLAA
Length = 360
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/76 (40%), Positives = 50/76 (65%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
++++ + LN+L +ER+I++LR+G DG+ R+L E+G FG++RER Q+E AL
Sbjct: 285 QKMLHAELTAALNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALR 344
Query: 379 RLKKCLVSQGLDAYAD 332
RL+ V Q L +Y D
Sbjct: 345 RLRHPSVGQRLHSYLD 360
[206][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/74 (40%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ ++ VL+ L P+E++++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 299 LLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y +
Sbjct: 359 RHPSRSKKLKDYLE 372
[207][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/77 (40%), Positives = 52/77 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
V +L+ + +VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E
Sbjct: 242 VISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREV 301
Query: 385 LYRLKKCLVSQGLDAYA 335
+ +L+ + L +YA
Sbjct: 302 MAKLRNGERADRLRSYA 318
[208][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 66.2 bits (160), Expect = 2e-09
Identities = 29/64 (45%), Positives = 46/64 (71%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S Q+++ + VL L +E ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +AL
Sbjct: 388 SDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKAL 447
Query: 382 YRLK 371
+L+
Sbjct: 448 RKLR 451
[209][TOP]
>UniRef100_P71106 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
RepID=P71106_CHLAU
Length = 346
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/76 (40%), Positives = 50/76 (65%)
Frame = -3
Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380
++++ + LN+L +ER+I++LR+G DG+ R+L E+G FG++RER Q+E AL
Sbjct: 271 QKMLHAELTAALNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALR 330
Query: 379 RLKKCLVSQGLDAYAD 332
RL+ V Q L +Y D
Sbjct: 331 RLRHPSVGQRLHSYLD 346
[210][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[211][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[212][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[213][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 268 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 327
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 328 LRHPSRSKRLKDFMD 342
[214][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[215][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[216][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[217][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 293 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 352
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 353 LRHPSRSKRLKDFMD 367
[218][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[219][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S +L++ + VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL
Sbjct: 296 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S L + D
Sbjct: 356 RKLRHPSRSNQLKDFLD 372
[220][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 66.2 bits (160), Expect = 2e-09
Identities = 31/77 (40%), Positives = 51/77 (66%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S +L++ + VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL
Sbjct: 297 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 382 YRLKKCLVSQGLDAYAD 332
+L+ S L + D
Sbjct: 357 RKLRHPSRSNQLKDFLD 373
[221][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[222][TOP]
>UniRef100_B4AVJ3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AVJ3_9CHRO
Length = 328
Score = 66.2 bits (160), Expect = 2e-09
Identities = 28/66 (42%), Positives = 53/66 (80%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++LMR+ + ++L +L P++R ++ LRFG +DG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELMRQDLQDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L +L++
Sbjct: 311 LSQLRR 316
[223][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 66.2 bits (160), Expect = 2e-09
Identities = 29/64 (45%), Positives = 46/64 (71%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S Q+++ + VL L +E ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +AL
Sbjct: 381 SDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKAL 440
Query: 382 YRLK 371
+L+
Sbjct: 441 RKLR 444
[224][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[225][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[226][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 66.2 bits (160), Expect = 2e-09
Identities = 30/75 (40%), Positives = 52/75 (69%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 354 LRHPSRSKRLKDFMD 368
[227][TOP]
>UniRef100_UPI0001B44D01 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis KZN
605 RepID=UPI0001B44D01
Length = 377
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 300 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 359
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ SQ L Y D
Sbjct: 360 MSKLRHPSRSQVLRDYLD 377
[228][TOP]
>UniRef100_UPI0001AF41EF RNA polymerase sigma factor n=1 Tax=Mycobacterium kansasii ATCC
12478 RepID=UPI0001AF41EF
Length = 518
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 441 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 500
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ SQ L Y D
Sbjct: 501 MSKLRHPSRSQVLRDYLD 518
[229][TOP]
>UniRef100_UPI000190610E RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis T17
RepID=UPI000190610E
Length = 530
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 453 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 512
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ SQ L Y D
Sbjct: 513 MSKLRHPSRSQVLRDYLD 530
[230][TOP]
>UniRef100_UPI00019014BB RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
02_1987 RepID=UPI00019014BB
Length = 197
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 120 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 179
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ SQ L Y D
Sbjct: 180 MSKLRHPSRSQVLRDYLD 197
[231][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 65.9 bits (159), Expect = 2e-09
Identities = 29/74 (39%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 299 MLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 358
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L + D
Sbjct: 359 RHPSRSKKLKDFLD 372
[232][TOP]
>UniRef100_Q55525 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
RepID=Q55525_SYNY3
Length = 345
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/66 (42%), Positives = 51/66 (77%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++ MR+ + N+L +L P+++ ++ +RFG DG+E SL++IG+ +SRER+ QLEN+A
Sbjct: 268 ITQESMRQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQA 327
Query: 385 LYRLKK 368
L +LK+
Sbjct: 328 LAQLKR 333
[233][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/64 (43%), Positives = 48/64 (75%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL
Sbjct: 293 SYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 352
Query: 382 YRLK 371
+L+
Sbjct: 353 RKLR 356
[234][TOP]
>UniRef100_Q0RDY7 RNA polymerase sigma factor n=1 Tax=Frankia alni ACN14a
RepID=Q0RDY7_FRAAA
Length = 373
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/73 (43%), Positives = 47/73 (64%)
Frame = -3
Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371
M+ + NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+
Sbjct: 301 MQDEIENVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELR 360
Query: 370 KCLVSQGLDAYAD 332
K V+ L + D
Sbjct: 361 KPAVAGRLREFLD 373
[235][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 65.9 bits (159), Expect = 2e-09
Identities = 30/75 (40%), Positives = 51/75 (68%)
Frame = -3
Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377
+L++ + VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +
Sbjct: 305 ELLKEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 364
Query: 376 LKKCLVSQGLDAYAD 332
L+ S+ L + D
Sbjct: 365 LRHPSRSKQLKDFLD 379
[236][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/74 (43%), Positives = 51/74 (68%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R + +VL+ L +E+R++ LRFG EDG R+L E+G+ FG++RERI Q+E +AL +L
Sbjct: 285 LLREQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKL 344
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y +
Sbjct: 345 RHPSRSKKLKDYLE 358
[237][TOP]
>UniRef100_B7K8N4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7K8N4_CYAP7
Length = 328
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/66 (42%), Positives = 53/66 (80%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
++++LMR+ + ++L +L P++R ++ LRFG +DG+E SL++IG+ +SRER+ QLE++A
Sbjct: 251 ITQELMRQDLHDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQA 310
Query: 385 LYRLKK 368
L +L++
Sbjct: 311 LSQLRR 316
[238][TOP]
>UniRef100_B2HLZ7 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
RepID=B2HLZ7_MYCMM
Length = 501
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 424 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 483
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ SQ L Y D
Sbjct: 484 MSKLRHPSRSQVLRDYLD 501
[239][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 65.9 bits (159), Expect = 2e-09
Identities = 30/74 (40%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L++ ++ VL+ L P+E++++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 299 LLKEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y +
Sbjct: 359 RHPSRSKKLKDYLE 372
[240][TOP]
>UniRef100_A8L6K9 RNA polymerase sigma factor n=1 Tax=Frankia sp. EAN1pec
RepID=A8L6K9_FRASN
Length = 423
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/73 (43%), Positives = 47/73 (64%)
Frame = -3
Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371
M+ + NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+
Sbjct: 351 MQDEIDNVLGALNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELR 410
Query: 370 KCLVSQGLDAYAD 332
K V+ L + D
Sbjct: 411 KPAVAGRLREFLD 423
[241][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
L+R + VL L +E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L
Sbjct: 290 LLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 349
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L Y D
Sbjct: 350 RHPSRSKKLKDYLD 363
[242][TOP]
>UniRef100_A0PT58 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
RepID=A0PT58_MYCUA
Length = 501
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 424 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 483
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ SQ L Y D
Sbjct: 484 MSKLRHPSRSQVLRDYLD 501
[243][TOP]
>UniRef100_Q8GGT8 RNA polymerase sigma factor n=1 Tax=Frankia sp. ACN14a
RepID=Q8GGT8_9ACTO
Length = 385
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/73 (43%), Positives = 47/73 (64%)
Frame = -3
Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371
M+ + NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+
Sbjct: 313 MQDEIENVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELR 372
Query: 370 KCLVSQGLDAYAD 332
K V+ L + D
Sbjct: 373 KPAVAGRLREFLD 385
[244][TOP]
>UniRef100_Q60158 RNA polymerase sigma factor n=1 Tax=Mycobacterium bovis
RepID=Q60158_MYCBO
Length = 528
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/78 (41%), Positives = 53/78 (67%)
Frame = -3
Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386
VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 451 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 510
Query: 385 LYRLKKCLVSQGLDAYAD 332
+ +L+ SQ L Y D
Sbjct: 511 MSKLRHPSRSQVLRDYLD 528
[245][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/64 (43%), Positives = 48/64 (75%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL
Sbjct: 340 SYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 399
Query: 382 YRLK 371
+L+
Sbjct: 400 RKLR 403
[246][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 65.9 bits (159), Expect = 2e-09
Identities = 29/74 (39%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 284 MLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 343
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L + D
Sbjct: 344 RHPSRSKKLKDFLD 357
[247][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 65.9 bits (159), Expect = 2e-09
Identities = 29/74 (39%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 284 MLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 343
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L + D
Sbjct: 344 RHPSRSKKLKDFLD 357
[248][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
Length = 357
Score = 65.9 bits (159), Expect = 2e-09
Identities = 29/74 (39%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 284 MLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 343
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L + D
Sbjct: 344 RHPSRSKKLKDFLD 357
[249][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 65.9 bits (159), Expect = 2e-09
Identities = 29/74 (39%), Positives = 52/74 (70%)
Frame = -3
Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374
+++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 284 MLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 343
Query: 373 KKCLVSQGLDAYAD 332
+ S+ L + D
Sbjct: 344 RHPSRSKKLKDFLD 357
[250][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/64 (43%), Positives = 48/64 (75%)
Frame = -3
Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383
S +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL
Sbjct: 276 SYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 335
Query: 382 YRLK 371
+L+
Sbjct: 336 RKLR 339