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[1][TOP] >UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 120 bits (300), Expect = 9e-26 Identities = 55/81 (67%), Positives = 73/81 (90%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+KQLMR+HVL++LN L P+ER+IIRLR+G EDG+++SLSEIG +FGLS+ER+ QLE+RA Sbjct: 468 VAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRA 527 Query: 385 LYRLKKCLVSQGLDAYADKLI 323 LY+LK+CL S GL+AYAD L+ Sbjct: 528 LYKLKQCLASHGLEAYADLLV 548 [2][TOP] >UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR Length = 535 Score = 114 bits (286), Expect = 4e-24 Identities = 55/80 (68%), Positives = 69/80 (86%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+KQLMR+H+ +LN L KERRIIRLRFG EDG+++SLSEIG +FGLS+ER+ QLE+RA Sbjct: 455 VAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRA 514 Query: 385 LYRLKKCLVSQGLDAYADKL 326 LY+LK+C+ S GLDAYAD L Sbjct: 515 LYKLKQCVGSHGLDAYADLL 534 [3][TOP] >UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH Length = 487 Score = 113 bits (282), Expect = 1e-23 Identities = 56/81 (69%), Positives = 68/81 (83%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V KQLMR HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RA Sbjct: 407 VGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRA 466 Query: 385 LYRLKKCLVSQGLDAYADKLI 323 LYRLK+ + S GL AYAD L+ Sbjct: 467 LYRLKQNMNSHGLHAYADLLV 487 [4][TOP] >UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LD95_ARATH Length = 547 Score = 113 bits (282), Expect = 1e-23 Identities = 56/81 (69%), Positives = 68/81 (83%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V KQLMR HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RA Sbjct: 467 VGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRA 526 Query: 385 LYRLKKCLVSQGLDAYADKLI 323 LYRLK+ + S GL AYAD L+ Sbjct: 527 LYRLKQNMNSHGLHAYADLLV 547 [5][TOP] >UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001983B83 Length = 561 Score = 107 bits (267), Expect = 6e-22 Identities = 52/81 (64%), Positives = 66/81 (81%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+KQLMR+HV N+L+ L PKERRIIRLRFG DG R+LSEIG +FG S+ER+ QLE RA Sbjct: 481 VAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRA 540 Query: 385 LYRLKKCLVSQGLDAYADKLI 323 L++LK+CL S GL++Y D L+ Sbjct: 541 LHKLKQCLSSHGLESYTDLLV 561 [6][TOP] >UniRef100_A7PT61 Chromosome chr8 scaffold_29, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PT61_VITVI Length = 284 Score = 107 bits (267), Expect = 6e-22 Identities = 52/81 (64%), Positives = 66/81 (81%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+KQLMR+HV N+L+ L PKERRIIRLRFG DG R+LSEIG +FG S+ER+ QLE RA Sbjct: 204 VAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRA 263 Query: 385 LYRLKKCLVSQGLDAYADKLI 323 L++LK+CL S GL++Y D L+ Sbjct: 264 LHKLKQCLSSHGLESYTDLLV 284 [7][TOP] >UniRef100_Q84LK8 Os08g0242800 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q84LK8_ORYSJ Length = 572 Score = 80.5 bits (197), Expect = 8e-14 Identities = 40/80 (50%), Positives = 54/80 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V + +MR+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRA Sbjct: 492 VDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRA 551 Query: 385 LYRLKKCLVSQGLDAYADKL 326 L +LK+ QG D Y D L Sbjct: 552 LEKLKRSASLQGFDVYFDLL 571 [8][TOP] >UniRef100_B8BC85 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=B8BC85_ORYSI Length = 537 Score = 80.5 bits (197), Expect = 8e-14 Identities = 40/80 (50%), Positives = 54/80 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V + +MR+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRA Sbjct: 457 VDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRA 516 Query: 385 LYRLKKCLVSQGLDAYADKL 326 L +LK+ QG D Y D L Sbjct: 517 LEKLKRSASLQGFDVYFDLL 536 [9][TOP] >UniRef100_A3BR19 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=A3BR19_ORYSJ Length = 497 Score = 80.5 bits (197), Expect = 8e-14 Identities = 40/80 (50%), Positives = 54/80 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V + +MR+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRA Sbjct: 417 VDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRA 476 Query: 385 LYRLKKCLVSQGLDAYADKL 326 L +LK+ QG D Y D L Sbjct: 477 LEKLKRSASLQGFDVYFDLL 496 [10][TOP] >UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 74.7 bits (182), Expect = 4e-12 Identities = 32/75 (42%), Positives = 53/75 (70%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 + LMRR + +L L P+ER +++LR+G DGE R+L+E+G++ G+SRER+ Q+EN AL Sbjct: 264 ESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALR 323 Query: 379 RLKKCLVSQGLDAYA 335 +L++ + + YA Sbjct: 324 KLRRIARERLAEYYA 338 [11][TOP] >UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=A9RXT3_PHYPA Length = 579 Score = 73.9 bits (180), Expect = 8e-12 Identities = 35/78 (44%), Positives = 54/78 (69%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 + KQLMR+ + VL L P+ER ++RLRFG +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 496 IVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKA 555 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L++ + L Y D Sbjct: 556 MRKLRQPSRNSILREYLD 573 [12][TOP] >UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=C4CIZ0_9CHLR Length = 390 Score = 73.6 bits (179), Expect = 1e-11 Identities = 36/77 (46%), Positives = 53/77 (68%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S++L++ + + L+KL +ERRII LRFG EDG+ R+L E+G FG++RERI Q+E +AL Sbjct: 314 SQELLKHQISDALSKLTERERRIIILRFGLEDGQFRTLEEVGREFGITRERIRQIEAKAL 373 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S L Y D Sbjct: 374 RKLRHPTYSHRLRGYLD 390 [13][TOP] >UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NG03_ROSCS Length = 541 Score = 73.2 bits (178), Expect = 1e-11 Identities = 35/77 (45%), Positives = 54/77 (70%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S Q++R V VLN+L +ERR+++LRFG EDG R+L E+G+ FG++RERI Q+E +AL Sbjct: 465 SHQMLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKAL 524 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ + + L Y + Sbjct: 525 RKLRHPRLGKKLRDYLE 541 [14][TOP] >UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UQ16_ROSS1 Length = 541 Score = 73.2 bits (178), Expect = 1e-11 Identities = 35/77 (45%), Positives = 54/77 (70%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S Q++R V VLN+L +ERR+++LRFG EDG R+L E+G+ FG++RERI Q+E +AL Sbjct: 465 SHQMLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKAL 524 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ + + L Y + Sbjct: 525 RKLRHPRLGKKLRDYLE 541 [15][TOP] >UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKT5_MOOTA Length = 361 Score = 72.8 bits (177), Expect = 2e-11 Identities = 35/77 (45%), Positives = 53/77 (68%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S L+R + VLN L P+E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL Sbjct: 285 SFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKAL 344 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L Y + Sbjct: 345 RKLRHPSRSKKLKDYLE 361 [16][TOP] >UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10UV2_TRIEI Length = 386 Score = 72.8 bits (177), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + +VLN L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 309 VSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 368 Query: 385 LYRLK 371 L +L+ Sbjct: 369 LRKLR 373 [17][TOP] >UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SFN0_9FIRM Length = 360 Score = 72.8 bits (177), Expect = 2e-11 Identities = 35/77 (45%), Positives = 54/77 (70%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 +QL+RR +L+VL L P+E R+I LRFG EDG R+L E+G+ F ++RER+ Q+E +AL Sbjct: 284 RQLLRRELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKALR 343 Query: 379 RLKKCLVSQGLDAYADK 329 +L+ ++ L Y D+ Sbjct: 344 KLRHPSRAKLLRDYLDE 360 [18][TOP] >UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor n=1 Tax=Vitis vinifera RepID=UPI000198388B Length = 578 Score = 72.4 bits (176), Expect = 2e-11 Identities = 35/74 (47%), Positives = 50/74 (67%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 KQ MR + VLN L P+E+++IR R+G EDG ++L EIGE+ G+SRERI Q+E+ A Sbjct: 502 KQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFR 561 Query: 379 RLKKCLVSQGLDAY 338 +LK ++ L Y Sbjct: 562 KLKNKRRTKHLQQY 575 [19][TOP] >UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KDV7_CYAP7 Length = 376 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 299 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 358 Query: 385 LYRLK 371 L +L+ Sbjct: 359 LRKLR 363 [20][TOP] >UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WS32_CYAA5 Length = 416 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398 Query: 385 LYRLK 371 L +L+ Sbjct: 399 LRKLR 403 [21][TOP] >UniRef100_B1VYB1 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VYB1_STRGG Length = 363 Score = 72.4 bits (176), Expect = 2e-11 Identities = 34/74 (45%), Positives = 51/74 (68%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G EDG R+L EIG IFG++RERI Q+E++ L RL Sbjct: 290 LLREHLEAVLSTLGERERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRL 349 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 350 RDHAFADQLRGYLD 363 [22][TOP] >UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JGK3_MICAN Length = 416 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398 Query: 385 LYRLK 371 L +L+ Sbjct: 399 LRKLR 403 [23][TOP] >UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C7J7_CROWT Length = 414 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 337 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 396 Query: 385 LYRLK 371 L +L+ Sbjct: 397 LRKLR 401 [24][TOP] >UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece RepID=C7QR23_CYAP0 Length = 379 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 302 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 361 Query: 385 LYRLK 371 L +L+ Sbjct: 362 LRKLR 366 [25][TOP] >UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AUJ5_9CHRO Length = 377 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 300 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 359 Query: 385 LYRLK 371 L +L+ Sbjct: 360 LRKLR 364 [26][TOP] >UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820 RepID=B1PVV9_MICAE Length = 416 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398 Query: 385 LYRLK 371 L +L+ Sbjct: 399 LRKLR 403 [27][TOP] >UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YBI5_MICAE Length = 416 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398 Query: 385 LYRLK 371 L +L+ Sbjct: 399 LRKLR 403 [28][TOP] >UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ISY9_9CHRO Length = 416 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398 Query: 385 LYRLK 371 L +L+ Sbjct: 399 LRKLR 403 [29][TOP] >UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA Length = 525 Score = 72.4 bits (176), Expect = 2e-11 Identities = 34/74 (45%), Positives = 52/74 (70%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 K L++ + NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL Sbjct: 440 KSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALR 499 Query: 379 RLKKCLVSQGLDAY 338 +LK+ +Q L Y Sbjct: 500 KLKQPSRNQVLQEY 513 [30][TOP] >UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PSL8_VITVI Length = 235 Score = 72.4 bits (176), Expect = 2e-11 Identities = 35/74 (47%), Positives = 50/74 (67%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 KQ MR + VLN L P+E+++IR R+G EDG ++L EIGE+ G+SRERI Q+E+ A Sbjct: 159 KQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFR 218 Query: 379 RLKKCLVSQGLDAY 338 +LK ++ L Y Sbjct: 219 KLKNKRRTKHLQQY 232 [31][TOP] >UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803 RepID=RPOD_SYNY3 Length = 425 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 348 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 407 Query: 385 LYRLK 371 L +L+ Sbjct: 408 LRKLR 412 [32][TOP] >UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa RepID=RPOD_MICAE Length = 416 Score = 72.4 bits (176), Expect = 2e-11 Identities = 33/65 (50%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398 Query: 385 LYRLK 371 L +L+ Sbjct: 399 LRKLR 403 [33][TOP] >UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z904_DEHE1 Length = 520 Score = 72.0 bits (175), Expect = 3e-11 Identities = 34/77 (44%), Positives = 53/77 (68%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S+QL++ + VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L Y + Sbjct: 504 RKLRHPSRSRKLKDYLE 520 [34][TOP] >UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZ85_THERP Length = 369 Score = 72.0 bits (175), Expect = 3e-11 Identities = 36/77 (46%), Positives = 54/77 (70%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S+QL+R+ + L++L +ERRII LR+G EDG+ R+L E+G FG++RERI Q+E +AL Sbjct: 293 SQQLLRQQLEEALSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKAL 352 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L Y D Sbjct: 353 RKLRHPSCSRFLRGYLD 369 [35][TOP] >UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides RepID=A5FRQ7_DEHSB Length = 520 Score = 72.0 bits (175), Expect = 3e-11 Identities = 34/77 (44%), Positives = 53/77 (68%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S+QL++ + VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L Y + Sbjct: 504 RKLRHPSRSRKLKDYLE 520 [36][TOP] >UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS RepID=A8CRQ1_9CHLR Length = 520 Score = 72.0 bits (175), Expect = 3e-11 Identities = 34/77 (44%), Positives = 53/77 (68%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S+QL++ + VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L Y + Sbjct: 504 RKLRHPSRSRKLKDYLE 520 [37][TOP] >UniRef100_UPI0001AEF979 putative RNA polymerase principal sigma factor n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=UPI0001AEF979 Length = 363 Score = 71.6 bits (174), Expect = 4e-11 Identities = 33/74 (44%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R+H+ VL+ L +ER++++LR+G +DG R+L EIG IFG++RERI Q+E++ L RL Sbjct: 290 LLRQHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLSRL 349 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 350 RDHAFADQLRGYLD 363 [38][TOP] >UniRef100_B5GE88 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB74 RepID=B5GE88_9ACTO Length = 338 Score = 71.6 bits (174), Expect = 4e-11 Identities = 32/74 (43%), Positives = 53/74 (71%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+RRH+ +VL+ L +ER++++LR+G +DG R+L EIG +FG++RERI Q+E + L +L Sbjct: 265 LLRRHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKL 324 Query: 373 KKCLVSQGLDAYAD 332 + + + L Y D Sbjct: 325 RSHVFADQLRGYLD 338 [39][TOP] >UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus communis RepID=B9SDA3_RICCO Length = 569 Score = 71.6 bits (174), Expect = 4e-11 Identities = 35/74 (47%), Positives = 50/74 (67%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 KQ M++ + VLN L P+E +++R RFG EDG ++L EIGEI G+SRERI Q+E+ A Sbjct: 493 KQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFR 552 Query: 379 RLKKCLVSQGLDAY 338 +LK ++ L Y Sbjct: 553 KLKNKKRTKQLKQY 566 [40][TOP] >UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H3D6_9FIRM Length = 359 Score = 71.2 bits (173), Expect = 5e-11 Identities = 31/63 (49%), Positives = 48/63 (76%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 ++L+RR + NVL L P+E R++ LRFG EDG+ R+L E+G+ F ++RERI Q+E +AL Sbjct: 283 RELLRRELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALR 342 Query: 379 RLK 371 +L+ Sbjct: 343 KLR 345 [41][TOP] >UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GBZ7_9FIRM Length = 372 Score = 71.2 bits (173), Expect = 5e-11 Identities = 31/75 (41%), Positives = 54/75 (72%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL L P+E++++ LRFG EDG R+L E+G++FG++RERI Q+E +AL + Sbjct: 298 ELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRK 357 Query: 376 LKKCLVSQGLDAYAD 332 L+ + S+ L Y + Sbjct: 358 LRHPMRSKRLKDYLE 372 [42][TOP] >UniRef100_UPI0001B55E40 RNA polymerase principal sigma factor n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B55E40 Length = 201 Score = 70.9 bits (172), Expect = 6e-11 Identities = 32/74 (43%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+RRH+ +VL+ L +ER++++LR+G +DG R+L EIG +FG++RERI Q+E + L +L Sbjct: 128 LLRRHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKL 187 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 188 RSHAFADQLRGYLD 201 [43][TOP] >UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1Z3_NATTJ Length = 360 Score = 70.9 bits (172), Expect = 6e-11 Identities = 32/75 (42%), Positives = 55/75 (73%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + VL+ L P+E++++RLRFG +DG+ R+L E+G+ FG++RERI Q+E +AL + Sbjct: 286 ELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRK 345 Query: 376 LKKCLVSQGLDAYAD 332 L+ + S+ L Y D Sbjct: 346 LRHPMRSKRLKDYLD 360 [44][TOP] >UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4B0_HERA2 Length = 400 Score = 70.9 bits (172), Expect = 6e-11 Identities = 31/64 (48%), Positives = 50/64 (78%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S Q++R V VL++L +E+R+++LRFG EDG +R+L E+G+ FG++RERI Q+E +AL Sbjct: 324 SHQMLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKAL 383 Query: 382 YRLK 371 +L+ Sbjct: 384 RKLR 387 [45][TOP] >UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102 RepID=Q9L4T2_NOSP7 Length = 389 Score = 70.5 bits (171), Expect = 8e-11 Identities = 32/65 (49%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 312 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 371 Query: 385 LYRLK 371 L +L+ Sbjct: 372 LRKLR 376 [46][TOP] >UniRef100_A4X4X9 RNA polymerase sigma factor n=1 Tax=Salinispora tropica CNB-440 RepID=A4X4X9_SALTO Length = 332 Score = 70.5 bits (171), Expect = 8e-11 Identities = 36/77 (46%), Positives = 52/77 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS +R+ + VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E Sbjct: 255 VSGGELRQEMCGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGT 314 Query: 385 LYRLKKCLVSQGLDAYA 335 L++L+ +Q L+AYA Sbjct: 315 LHKLRAPERAQRLEAYA 331 [47][TOP] >UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328 RepID=B5VWQ7_SPIMA Length = 387 Score = 70.5 bits (171), Expect = 8e-11 Identities = 32/65 (49%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + +VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 310 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 369 Query: 385 LYRLK 371 L +L+ Sbjct: 370 LRKLR 374 [48][TOP] >UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPM0_9SYNE Length = 404 Score = 70.5 bits (171), Expect = 8e-11 Identities = 32/65 (49%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + +VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 327 VSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 386 Query: 385 LYRLK 371 L +L+ Sbjct: 387 LRKLR 391 [49][TOP] >UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W0Y8_9CYAN Length = 380 Score = 70.5 bits (171), Expect = 8e-11 Identities = 32/65 (49%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + +VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 303 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 362 Query: 385 LYRLK 371 L +L+ Sbjct: 363 LRKLR 367 [50][TOP] >UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZJC3_NODSP Length = 391 Score = 70.5 bits (171), Expect = 8e-11 Identities = 32/65 (49%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 314 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 373 Query: 385 LYRLK 371 L +L+ Sbjct: 374 LRKLR 378 [51][TOP] >UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YTZ3_9CYAN Length = 391 Score = 70.5 bits (171), Expect = 8e-11 Identities = 32/65 (49%), Positives = 50/65 (76%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + +VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 314 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 373 Query: 385 LYRLK 371 L +L+ Sbjct: 374 LRKLR 378 [52][TOP] >UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RYI5_OSTLU Length = 344 Score = 70.5 bits (171), Expect = 8e-11 Identities = 31/64 (48%), Positives = 48/64 (75%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 K L++ + NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL Sbjct: 254 KSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALR 313 Query: 379 RLKK 368 +LK+ Sbjct: 314 KLKQ 317 [53][TOP] >UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae RepID=RPOD_ANASP Length = 390 Score = 70.5 bits (171), Expect = 8e-11 Identities = 32/65 (49%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 313 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 372 Query: 385 LYRLK 371 L +L+ Sbjct: 373 LRKLR 377 [54][TOP] >UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LQB0_PICSI Length = 495 Score = 70.1 bits (170), Expect = 1e-10 Identities = 33/78 (42%), Positives = 55/78 (70%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK+L ++ + VL+ L +E++++RLR+G +DG +SL E+GE F LSRER+ Q+E +A Sbjct: 417 VSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKA 476 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L++ +Q L Y D Sbjct: 477 MRKLRQNHRTQHLKHYLD 494 [55][TOP] >UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 70.1 bits (170), Expect = 1e-10 Identities = 33/78 (42%), Positives = 55/78 (70%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK+L ++ + VL+ L +E++++RLR+G +DG +SL E+GE F LSRER+ Q+E +A Sbjct: 514 VSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKA 573 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L++ +Q L Y D Sbjct: 574 MRKLRQNHRTQHLKHYLD 591 [56][TOP] >UniRef100_UPI0001AEE245 RNA polymerase sigma factor n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AEE245 Length = 357 Score = 69.7 bits (169), Expect = 1e-10 Identities = 31/74 (41%), Positives = 53/74 (71%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R+H+ VL L +ER++++LR+GF+DG R+L EIG +FG++RER+ Q+E++ L RL Sbjct: 284 LLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRL 343 Query: 373 KKCLVSQGLDAYAD 332 ++ + L Y + Sbjct: 344 REHTAAGQLRGYLE 357 [57][TOP] >UniRef100_O67437 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus RepID=O67437_AQUAE Length = 310 Score = 69.7 bits (169), Expect = 1e-10 Identities = 33/73 (45%), Positives = 53/73 (72%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V ++++++ + ++L+KL KER++I LRFG + E ++L EIGEI GLSRER+ QLE RA Sbjct: 233 VIQEVIQKEIDDLLSKLTDKERKVIELRFGLKGNEPKTLREIGEILGLSRERVRQLETRA 292 Query: 385 LYRLKKCLVSQGL 347 L +L+ + + L Sbjct: 293 LRKLRSLAMKRHL 305 [58][TOP] >UniRef100_Q9R5W0 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus RepID=Q9R5W0_STRGR Length = 357 Score = 69.7 bits (169), Expect = 1e-10 Identities = 31/74 (41%), Positives = 53/74 (71%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R+H+ VL L +ER++++LR+GF+DG R+L EIG +FG++RER+ Q+E++ L RL Sbjct: 284 LLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRL 343 Query: 373 KKCLVSQGLDAYAD 332 ++ + L Y + Sbjct: 344 REHTAAGQLRGYLE 357 [59][TOP] >UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum RepID=RPOD_CLOAB Length = 378 Score = 69.7 bits (169), Expect = 1e-10 Identities = 31/75 (41%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 ++++ +L +LN L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL + Sbjct: 304 RMLKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRK 363 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L Y D Sbjct: 364 LRHPSRSKKLKDYLD 378 [60][TOP] >UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens RepID=Q0SRH3_CLOPS Length = 366 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 353 RHPSRSKKLKDYLD 366 [61][TOP] >UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani RepID=Q892T0_CLOTE Length = 366 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 353 RHPSRSKKLKDYLD 366 [62][TOP] >UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus RepID=Q7NHG5_GLOVI Length = 400 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/65 (47%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VLN L P+ER ++RLR+G +DG ++L EIG++F ++RERI Q+E +A Sbjct: 323 VAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 382 Query: 385 LYRLK 371 L +L+ Sbjct: 383 LRKLR 387 [63][TOP] >UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67RX0_SYMTH Length = 388 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 51/74 (68%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ + VL L P+E +++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L Sbjct: 315 LLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKL 374 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y + Sbjct: 375 RHPSRSKKLKDYLE 388 [64][TOP] >UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002 RepID=Q59965_SYNP2 Length = 375 Score = 69.3 bits (168), Expect = 2e-10 Identities = 32/65 (49%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + NVL+ L +ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 298 VSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 357 Query: 385 LYRLK 371 L +L+ Sbjct: 358 LRKLR 362 [65][TOP] >UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWU4_SYNWW Length = 358 Score = 69.3 bits (168), Expect = 2e-10 Identities = 32/74 (43%), Positives = 51/74 (68%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ +LN L +E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L Sbjct: 285 LLREHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKL 344 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y + Sbjct: 345 RHPSRSKKLKDYIE 358 [66][TOP] >UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TMC7_CLOBB Length = 374 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 301 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 360 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 361 RHPSRSKKLKDYLD 374 [67][TOP] >UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LRQ7_CLOB8 Length = 376 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 303 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 362 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 363 RHPSRSKKLKDYLD 376 [68][TOP] >UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri RepID=A5N6R2_CLOK5 Length = 354 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 281 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 340 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 341 RHPSRSKKLKDYLD 354 [69][TOP] >UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT RepID=A0Q1P4_CLONN Length = 368 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 355 RHPSRSKKLKDYLD 368 [70][TOP] >UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens RepID=Q0TNV3_CLOP1 Length = 366 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 353 RHPSRSKKLKDYLD 366 [71][TOP] >UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTX7_9CLOT Length = 361 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 288 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 347 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 348 RHPSRSKKLKDYLD 361 [72][TOP] >UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRR6_CLOBO Length = 368 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 355 RHPSRSKKLKDYLD 368 [73][TOP] >UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E RepID=B2V2K8_CLOBA Length = 374 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 301 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 360 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 361 RHPSRSKKLKDYLD 374 [74][TOP] >UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IAB3_9CLOT Length = 370 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 297 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 356 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 357 RHPSRSKKLKDYLD 370 [75][TOP] >UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum RepID=B1QWY9_CLOBU Length = 369 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 296 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 355 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 356 RHPSRSKKLKDYLD 369 [76][TOP] >UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum RepID=A5I618_CLOBH Length = 361 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 288 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 347 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 348 RHPSRSKKLKDYLD 361 [77][TOP] >UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BDC8_CLOBO Length = 368 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 355 RHPSRSKKLKDYLD 368 [78][TOP] >UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJJ6_9BACT Length = 579 Score = 69.3 bits (168), Expect = 2e-10 Identities = 31/63 (49%), Positives = 47/63 (74%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 + L+++ V VL L P+E R+IRLRFG +DG R+L E+G IF ++RERI Q+E++AL Sbjct: 499 RSLLKKQVDEVLKTLTPREERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALK 558 Query: 379 RLK 371 +L+ Sbjct: 559 KLR 561 [79][TOP] >UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta RepID=Q98RZ3_GUITH Length = 460 Score = 69.3 bits (168), Expect = 2e-10 Identities = 28/66 (42%), Positives = 50/66 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V K ++R + NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A Sbjct: 348 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 407 Query: 385 LYRLKK 368 + +L++ Sbjct: 408 IRKLRQ 413 [80][TOP] >UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta RepID=Q8S9D0_GUITH Length = 490 Score = 69.3 bits (168), Expect = 2e-10 Identities = 28/66 (42%), Positives = 50/66 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V K ++R + NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424 Query: 385 LYRLKK 368 + +L++ Sbjct: 425 IRKLRQ 430 [81][TOP] >UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP Length = 485 Score = 69.3 bits (168), Expect = 2e-10 Identities = 28/66 (42%), Positives = 50/66 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V K ++R + NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424 Query: 385 LYRLKK 368 + +L++ Sbjct: 425 IRKLRQ 430 [82][TOP] >UniRef100_UPI0001B56202 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. C RepID=UPI0001B56202 Length = 381 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 308 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 367 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 368 RDHAFADQLRGYLD 381 [83][TOP] >UniRef100_UPI0001B51C3A RNA polymerase sigma factor n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B51C3A Length = 438 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 365 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 424 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 425 RDHAFADQLRGYLD 438 [84][TOP] >UniRef100_UPI0001B4B283 RNA polymerase sigma factor n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4B283 Length = 444 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 371 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 430 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 431 RDHAFADQLRGYLD 444 [85][TOP] >UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CDC4_ACAM1 Length = 371 Score = 68.9 bits (167), Expect = 2e-10 Identities = 31/65 (47%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL+ L P+ER +++LR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 294 VSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 353 Query: 385 LYRLK 371 L +L+ Sbjct: 354 LRKLR 358 [86][TOP] >UniRef100_C9ZAW9 Principal sigma factor HrdA n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZAW9_STRSC Length = 387 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 314 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 373 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 374 RDHAFADQLRGYLD 387 [87][TOP] >UniRef100_C9N712 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9N712_9ACTO Length = 358 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/74 (43%), Positives = 51/74 (68%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G +DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 285 LLREHLEVVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLDKL 344 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 345 RGHAFADQLRGYLD 358 [88][TOP] >UniRef100_C5RE54 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RE54_CLOCL Length = 363 Score = 68.9 bits (167), Expect = 2e-10 Identities = 31/74 (41%), Positives = 51/74 (68%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ ++NVL+ L P+E +++RLRFG +DG R+L E+G F ++RERI Q+E +AL +L Sbjct: 290 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKL 349 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 350 RHPSRSKKLKDYLD 363 [89][TOP] >UniRef100_B5HVY1 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HVY1_9ACTO Length = 374 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 301 LLREHLEAVLSTLGERERKVVQLRYGLADGRARTLEEIGRIFGVTRERIRQIESKTLNKL 360 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 361 RDHAFADQLRGYLD 374 [90][TOP] >UniRef100_B5GQH3 RNA polymerase sigma factor n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GQH3_STRCL Length = 385 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 312 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 371 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 372 RDHAFADQLRGYLD 385 [91][TOP] >UniRef100_B4V476 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1 RepID=B4V476_9ACTO Length = 362 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 289 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 348 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 349 RDHAFADQLRGYLD 362 [92][TOP] >UniRef100_A8UY45 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UY45_9AQUI Length = 309 Score = 68.9 bits (167), Expect = 2e-10 Identities = 31/73 (42%), Positives = 52/73 (71%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V ++++ + + ++L+KL KERR++ LRFG + E ++L EIG+I G+SRER+ QLE RA Sbjct: 232 VIQEVLEKEIYDLLDKLPEKERRVVELRFGLKGNEPKTLREIGDILGVSRERVRQLETRA 291 Query: 385 LYRLKKCLVSQGL 347 L +L+ + + L Sbjct: 292 LRKLRSLAMKRHL 304 [93][TOP] >UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO Length = 595 Score = 68.9 bits (167), Expect = 2e-10 Identities = 30/64 (46%), Positives = 48/64 (75%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 K L++ + NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL Sbjct: 510 KVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALR 569 Query: 379 RLKK 368 +L++ Sbjct: 570 KLRQ 573 [94][TOP] >UniRef100_UPI0001B4E713 RNA polymerase principal sigma factor n=1 Tax=Streptomyces lividans TK24 RepID=UPI0001B4E713 Length = 365 Score = 68.6 bits (166), Expect = 3e-10 Identities = 31/74 (41%), Positives = 51/74 (68%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R+H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L Sbjct: 292 LLRQHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKL 351 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 352 RDHAYADQLRGYLD 365 [95][TOP] >UniRef100_UPI0001AF1456 RNA polymerase sigma factor n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF1456 Length = 430 Score = 68.6 bits (166), Expect = 3e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 357 LLREHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 416 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 417 RDHAFADQLRGYLD 430 [96][TOP] >UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694293 Length = 367 Score = 68.6 bits (166), Expect = 3e-10 Identities = 32/77 (41%), Positives = 53/77 (68%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S +L++ + +VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL Sbjct: 291 SYELLKEQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKAL 350 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L + D Sbjct: 351 RKLRHPSRSKRLKDFLD 367 [97][TOP] >UniRef100_Q82BM5 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis RepID=Q82BM5_STRAW Length = 389 Score = 68.6 bits (166), Expect = 3e-10 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L Sbjct: 316 LLREHLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 375 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 376 RDHAFADQLRGYLD 389 [98][TOP] >UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica RepID=Q5YT68_NOCFA Length = 322 Score = 68.6 bits (166), Expect = 3e-10 Identities = 33/73 (45%), Positives = 51/73 (69%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+ V +VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L Sbjct: 249 LLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKL 308 Query: 373 KKCLVSQGLDAYA 335 +K + L AYA Sbjct: 309 RKGERADRLRAYA 321 [99][TOP] >UniRef100_C7GZY7 RNA polymerase sigma factor RpoD n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 68.6 bits (166), Expect = 3e-10 Identities = 32/74 (43%), Positives = 53/74 (71%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 ++R +L VLN L +ER +++LRFG DG++R+L E+G+ F ++RERI Q+E++A+ +L Sbjct: 374 MLRDELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKL 433 Query: 373 KKCLVSQGLDAYAD 332 K +S+ L Y D Sbjct: 434 KHPNMSKKLRDYID 447 [100][TOP] >UniRef100_C6W8L5 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W8L5_ACTMD Length = 349 Score = 68.6 bits (166), Expect = 3e-10 Identities = 31/78 (39%), Positives = 52/78 (66%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L+ + VL+ L P+E ++R+R+GF DG +L E+G ++G++RERI Q+E+R Sbjct: 272 VSSALLSADLRAVLDTLTPREAGVVRMRYGFPDGVLHTLEEVGRVYGVTRERIRQIESRT 331 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ S+GL+ Y D Sbjct: 332 MAKLQHPARSRGLEGYLD 349 [101][TOP] >UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MUC7_9CHLO Length = 587 Score = 68.6 bits (166), Expect = 3e-10 Identities = 30/64 (46%), Positives = 48/64 (75%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 K L++ + NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL Sbjct: 495 KVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALR 554 Query: 379 RLKK 368 +L++ Sbjct: 555 KLRQ 558 [102][TOP] >UniRef100_P18182 RNA polymerase principal sigma factor hrdA n=1 Tax=Streptomyces coelicolor RepID=HRDA_STRCO Length = 396 Score = 68.6 bits (166), Expect = 3e-10 Identities = 31/74 (41%), Positives = 51/74 (68%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R+H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L Sbjct: 323 LLRQHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKL 382 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 383 RDHAYADQLRGYLD 396 [103][TOP] >UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp. pastoris str. CCMP1986 RepID=Q7V2I0_PROMP Length = 396 Score = 68.2 bits (165), Expect = 4e-10 Identities = 32/65 (49%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 319 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 378 Query: 385 LYRLK 371 L +L+ Sbjct: 379 LRKLR 383 [104][TOP] >UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC 6301 RepID=Q5N3Q1_SYNP6 Length = 399 Score = 68.2 bits (165), Expect = 4e-10 Identities = 30/65 (46%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL+ L P+ER ++RLR+G +DG ++L EIG++F ++RERI Q+E +A Sbjct: 322 VAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 381 Query: 385 LYRLK 371 L +L+ Sbjct: 382 LRKLR 386 [105][TOP] >UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9312 RepID=Q31C37_PROM9 Length = 393 Score = 68.2 bits (165), Expect = 4e-10 Identities = 32/65 (49%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375 Query: 385 LYRLK 371 L +L+ Sbjct: 376 LRKLR 380 [106][TOP] >UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I6N1_CLOCE Length = 359 Score = 68.2 bits (165), Expect = 4e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 286 LLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 345 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 346 RHPSRSKKLKDYLD 359 [107][TOP] >UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9215 RepID=A8G3L2_PROM2 Length = 393 Score = 68.2 bits (165), Expect = 4e-10 Identities = 32/65 (49%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375 Query: 385 LYRLK 371 L +L+ Sbjct: 376 LRKLR 380 [108][TOP] >UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9301 RepID=A3PBM1_PROM0 Length = 394 Score = 68.2 bits (165), Expect = 4e-10 Identities = 32/65 (49%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 317 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 376 Query: 385 LYRLK 371 L +L+ Sbjct: 377 LRKLR 381 [109][TOP] >UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9515 RepID=A2BVF8_PROM5 Length = 397 Score = 68.2 bits (165), Expect = 4e-10 Identities = 32/65 (49%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 320 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 379 Query: 385 LYRLK 371 L +L+ Sbjct: 380 LRKLR 384 [110][TOP] >UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. AS9601 RepID=A2BPX8_PROMS Length = 394 Score = 68.2 bits (165), Expect = 4e-10 Identities = 32/65 (49%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 317 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 376 Query: 385 LYRLK 371 L +L+ Sbjct: 377 LRKLR 381 [111][TOP] >UniRef100_Q8KUI1 RNA polymerase sigma factor n=1 Tax=Actinosynnema pretiosum subsp. auranticum RepID=Q8KUI1_ACTPA Length = 348 Score = 68.2 bits (165), Expect = 4e-10 Identities = 31/78 (39%), Positives = 51/78 (65%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L+ + VL L P+E ++R+R+GF DG +L E+G ++G++RERI Q+E+R Sbjct: 271 VSSALLSADLRAVLETLTPREAGVVRMRYGFPDGVLHTLDEVGRVYGVTRERIRQIESRT 330 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ S+GL+ Y D Sbjct: 331 MAKLQHPARSRGLEGYLD 348 [112][TOP] >UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P839_9LACO Length = 380 Score = 68.2 bits (165), Expect = 4e-10 Identities = 28/62 (45%), Positives = 48/62 (77%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 ++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365 Query: 376 LK 371 L+ Sbjct: 366 LR 367 [113][TOP] >UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XU09_9LACO Length = 381 Score = 68.2 bits (165), Expect = 4e-10 Identities = 28/62 (45%), Positives = 48/62 (77%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 ++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 307 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 366 Query: 376 LK 371 L+ Sbjct: 367 LR 368 [114][TOP] >UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri RepID=C2EX53_LACRE Length = 380 Score = 68.2 bits (165), Expect = 4e-10 Identities = 28/62 (45%), Positives = 48/62 (77%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 ++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365 Query: 376 LK 371 L+ Sbjct: 366 LR 367 [115][TOP] >UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ESB4_9LACO Length = 380 Score = 68.2 bits (165), Expect = 4e-10 Identities = 28/62 (45%), Positives = 48/62 (77%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 ++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365 Query: 376 LK 371 L+ Sbjct: 366 LR 367 [116][TOP] >UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri RepID=A5VJI3_LACRD Length = 380 Score = 68.2 bits (165), Expect = 4e-10 Identities = 28/62 (45%), Positives = 48/62 (77%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 ++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365 Query: 376 LK 371 L+ Sbjct: 366 LR 367 [117][TOP] >UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9202 RepID=B9P0P2_PROMA Length = 393 Score = 68.2 bits (165), Expect = 4e-10 Identities = 32/65 (49%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375 Query: 385 LYRLK 371 L +L+ Sbjct: 376 LRKLR 380 [118][TOP] >UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23 RepID=B3XRX4_LACRE Length = 380 Score = 68.2 bits (165), Expect = 4e-10 Identities = 28/62 (45%), Positives = 48/62 (77%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 ++M++ + NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365 Query: 376 LK 371 L+ Sbjct: 366 LR 367 [119][TOP] >UniRef100_Q9ZPL0 Sigma factor SIG6 n=1 Tax=Zea mays RepID=Q9ZPL0_MAIZE Length = 541 Score = 68.2 bits (165), Expect = 4e-10 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 1/81 (1%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNK-LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 389 V + +MR+ V + L L P+E+ II RFG DG+ ++L IG+++GLS+ERI Q++N+ Sbjct: 460 VDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNK 519 Query: 388 ALYRLKKCLVSQGLDAYADKL 326 AL +L+ + +QG Y D L Sbjct: 520 ALDKLRNSISAQGFHVYFDLL 540 [120][TOP] >UniRef100_B4FJ30 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FJ30_MAIZE Length = 541 Score = 68.2 bits (165), Expect = 4e-10 Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 1/81 (1%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNK-LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 389 V + +MR+ V + L L P+E+ II RFG DG+ ++L IG+++GLS+ERI Q++N+ Sbjct: 460 VDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNK 519 Query: 388 ALYRLKKCLVSQGLDAYADKL 326 AL +L+ + +QG Y D L Sbjct: 520 ALDKLRNSISAQGFHVYFDLL 540 [121][TOP] >UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus PCC 7942 RepID=RPOD1_SYNE7 Length = 399 Score = 68.2 bits (165), Expect = 4e-10 Identities = 30/65 (46%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL+ L P+ER ++RLR+G +DG ++L EIG++F ++RERI Q+E +A Sbjct: 322 VAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 381 Query: 385 LYRLK 371 L +L+ Sbjct: 382 LRKLR 386 [122][TOP] >UniRef100_UPI0001B4B7AF RNA polymerase sigma factor n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4B7AF Length = 412 Score = 67.8 bits (164), Expect = 5e-10 Identities = 31/74 (41%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L Sbjct: 339 LLREHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRLFGVTRERIRQIESKTLNKL 398 Query: 373 KKCLVSQGLDAYAD 332 + + L Y D Sbjct: 399 RDHAFADQLRGYLD 412 [123][TOP] >UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM Length = 432 Score = 67.8 bits (164), Expect = 5e-10 Identities = 31/76 (40%), Positives = 52/76 (68%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +++R + +VL+ L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL + Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413 Query: 376 LKKCLVSQGLDAYADK 329 L+ S+ L + D+ Sbjct: 414 LRHPSRSKQLKDFMDE 429 [124][TOP] >UniRef100_C5D2W5 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70 RepID=C5D2W5_GEOSW Length = 831 Score = 67.8 bits (164), Expect = 5e-10 Identities = 32/54 (59%), Positives = 41/54 (75%) Frame = -3 Query: 511 PKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 350 P++ +II RFGF GEE +L EIGE+FG+SRERI Q+EN+AL LKKC +G Sbjct: 775 PRDWKIILYRFGFMTGEEMTLQEIGELFGVSRERIRQIENKALKHLKKCPALKG 828 [125][TOP] >UniRef100_A8M7Z0 RNA polymerase sigma factor n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M7Z0_SALAI Length = 328 Score = 67.8 bits (164), Expect = 5e-10 Identities = 35/72 (48%), Positives = 48/72 (66%) Frame = -3 Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371 +R+ V VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L +L+ Sbjct: 256 LRQEVRGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLRKLR 315 Query: 370 KCLVSQGLDAYA 335 +Q L AYA Sbjct: 316 APERAQRLAAYA 327 [126][TOP] >UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NGG2_ROSCS Length = 405 Score = 67.8 bits (164), Expect = 5e-10 Identities = 33/77 (42%), Positives = 49/77 (63%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S ++R + + L KL +ERRII+LR+G DG R+L E+G FG++RERI Q+E R L Sbjct: 329 SSHILREQIDSALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVL 388 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ +GL Y + Sbjct: 389 RKLRHPHYGRGLRGYLE 405 [127][TOP] >UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307 RepID=A5GSD3_SYNR3 Length = 401 Score = 67.8 bits (164), Expect = 5e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 324 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 383 Query: 385 LYRLK 371 L +L+ Sbjct: 384 LLKLR 388 [128][TOP] >UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC 27405 RepID=A3DDV0_CLOTH Length = 358 Score = 67.8 bits (164), Expect = 5e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 285 LLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 344 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 345 RHPSRSKKLKDYLD 358 [129][TOP] >UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 67.8 bits (164), Expect = 5e-10 Identities = 32/77 (41%), Positives = 53/77 (68%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S L++ + +VL+ L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL Sbjct: 297 SFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 356 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L + D Sbjct: 357 RKLRHPSRSRKLKDFLD 373 [130][TOP] >UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 67.8 bits (164), Expect = 5e-10 Identities = 33/78 (42%), Positives = 51/78 (65%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 + QL++ + VL L +E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL Sbjct: 381 NNQLLKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKAL 440 Query: 382 YRLKKCLVSQGLDAYADK 329 +LK S+ L + DK Sbjct: 441 RKLKHPTRSKRLRDFVDK 458 [131][TOP] >UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM Length = 358 Score = 67.8 bits (164), Expect = 5e-10 Identities = 31/74 (41%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 285 LLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 344 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 345 RHPSRSKKLKDYLD 358 [132][TOP] >UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RDH0_9ACTO Length = 334 Score = 67.8 bits (164), Expect = 5e-10 Identities = 35/72 (48%), Positives = 48/72 (66%) Frame = -3 Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371 +R V VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L +L+ Sbjct: 262 LRNEVRIVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTLLKLR 321 Query: 370 KCLVSQGLDAYA 335 +Q L+AYA Sbjct: 322 APERAQRLEAYA 333 [133][TOP] >UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC Length = 432 Score = 67.8 bits (164), Expect = 5e-10 Identities = 31/76 (40%), Positives = 52/76 (68%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +++R + +VL+ L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL + Sbjct: 354 EMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413 Query: 376 LKKCLVSQGLDAYADK 329 L+ S+ L + D+ Sbjct: 414 LRHPSRSKQLKDFMDE 429 [134][TOP] >UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum RepID=B2GBZ9_LACF3 Length = 380 Score = 67.8 bits (164), Expect = 5e-10 Identities = 28/62 (45%), Positives = 47/62 (75%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 ++M++ + NVL+ L +E ++RLRFG +DG R+L E+G +FG++RERI Q+E +AL + Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 365 Query: 376 LK 371 L+ Sbjct: 366 LR 367 [135][TOP] >UniRef100_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=1 Tax=Heterosigma akashiwo RepID=A5JEM2_9STRA Length = 404 Score = 67.8 bits (164), Expect = 5e-10 Identities = 27/61 (44%), Positives = 48/61 (78%) Frame = -3 Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371 +R+ + ++N L P+E+ ++R+R+G +DGE R+L EIG IF ++RER+ Q+E RAL++L+ Sbjct: 320 LRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIEARALHKLR 379 Query: 370 K 368 + Sbjct: 380 Q 380 [136][TOP] >UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=UPI0001966A7F Length = 364 Score = 67.4 bits (163), Expect = 7e-10 Identities = 32/77 (41%), Positives = 52/77 (67%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S+ L++ + +VL L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL Sbjct: 288 SQTLLKEQLADVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKAL 347 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L + D Sbjct: 348 RKLRHPSRSKKLRDFLD 364 [137][TOP] >UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U5C4_SYNPX Length = 471 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 394 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 453 Query: 385 LYRLK 371 L +L+ Sbjct: 454 LRKLR 458 [138][TOP] >UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902 RepID=Q3AWQ6_SYNS9 Length = 451 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 374 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 433 Query: 385 LYRLK 371 L +L+ Sbjct: 434 LRKLR 438 [139][TOP] >UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605 RepID=Q3ALS7_SYNSC Length = 435 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 358 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 417 Query: 385 LYRLK 371 L +L+ Sbjct: 418 LRKLR 422 [140][TOP] >UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311 RepID=Q0I8I7_SYNS3 Length = 440 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 363 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 422 Query: 385 LYRLK 371 L +L+ Sbjct: 423 LRKLR 427 [141][TOP] >UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G4K7_CHLAD Length = 345 Score = 67.4 bits (163), Expect = 7e-10 Identities = 33/77 (42%), Positives = 49/77 (63%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 +++L+ R + LN+L +ERRII LR+G DG R+L E+G + G++RER Q+E AL Sbjct: 269 AQKLLHRDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEAL 328 Query: 382 YRLKKCLVSQGLDAYAD 332 RL+ + Q L Y D Sbjct: 329 RRLRSPEIGQHLRDYLD 345 [142][TOP] >UniRef100_A9WEI7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WEI7_CHLAA Length = 345 Score = 67.4 bits (163), Expect = 7e-10 Identities = 33/77 (42%), Positives = 50/77 (64%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 +++L+RR + L++L +ERRII LR+G DG R+L E+G + G++RER Q+E AL Sbjct: 269 AQKLLRRDLCAALDRLNDRERRIIDLRYGLVDGRRRTLEEVGRVLGMTRERARQIEAEAL 328 Query: 382 YRLKKCLVSQGLDAYAD 332 RL+ V Q L Y + Sbjct: 329 RRLRSPEVGQHLRDYLE 345 [143][TOP] >UniRef100_A7NN98 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NN98_ROSCS Length = 348 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/64 (48%), Positives = 46/64 (71%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S+QL+RR + L++L +ERRII LR+G DG+ R+L E+G + G++RER Q+E AL Sbjct: 272 SQQLLRRDLAAALDRLNERERRIIDLRYGLVDGQRRTLEEVGRVLGMTRERARQIEAEAL 331 Query: 382 YRLK 371 RL+ Sbjct: 332 RRLR 335 [144][TOP] >UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5V244_ROSS1 Length = 401 Score = 67.4 bits (163), Expect = 7e-10 Identities = 33/77 (42%), Positives = 49/77 (63%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S ++R + + L KL +ERRII+LR+G DG R+L E+G FG++RERI Q+E R L Sbjct: 325 SHHILREQIDSALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVL 384 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ +GL Y + Sbjct: 385 RKLRHPHYGRGLRGYLE 401 [145][TOP] >UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803 RepID=A5GJC2_SYNPW Length = 450 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 373 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 432 Query: 385 LYRLK 371 L +L+ Sbjct: 433 LRKLR 437 [146][TOP] >UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107 RepID=Q05YJ7_9SYNE Length = 451 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 374 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 433 Query: 385 LYRLK 371 L +L+ Sbjct: 434 LRKLR 438 [147][TOP] >UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916 RepID=Q05RP2_9SYNE Length = 479 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 402 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 461 Query: 385 LYRLK 371 L +L+ Sbjct: 462 LRKLR 466 [148][TOP] >UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109 RepID=D0CLH5_9SYNE Length = 458 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 381 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 440 Query: 385 LYRLK 371 L +L+ Sbjct: 441 LRKLR 445 [149][TOP] >UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex degensii KC4 RepID=C9R939_9THEO Length = 369 Score = 67.4 bits (163), Expect = 7e-10 Identities = 32/77 (41%), Positives = 51/77 (66%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S L+R + VL L P+E++++RLRFG +DG R+L E+G+ FG++RERI Q+E + L Sbjct: 293 SYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 352 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L Y + Sbjct: 353 RKLRHPSRSKKLKDYLE 369 [150][TOP] >UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBJ7_WEIPA Length = 378 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/75 (41%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 Q+++ + +VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL + Sbjct: 304 QMLKEQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 363 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 364 LRHPSRSKQLRDFLD 378 [151][TOP] >UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5ILG7_9CHRO Length = 503 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 426 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 485 Query: 385 LYRLK 371 L +L+ Sbjct: 486 LRKLR 490 [152][TOP] >UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFC0_9FIRM Length = 361 Score = 67.4 bits (163), Expect = 7e-10 Identities = 33/77 (42%), Positives = 49/77 (63%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S L+R + VL L P+E +++RLRFG EDG R+L E+G F ++RERI Q+E +AL Sbjct: 285 SHTLLREQLSEVLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKAL 344 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L + D Sbjct: 345 RKLRHPSRSKKLKDFLD 361 [153][TOP] >UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CRY9_SYNPV Length = 447 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 370 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 429 Query: 385 LYRLK 371 L +L+ Sbjct: 430 LRKLR 434 [154][TOP] >UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z5L5_9SYNE Length = 456 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 379 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 438 Query: 385 LYRLK 371 L +L+ Sbjct: 439 LRKLR 443 [155][TOP] >UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YZH3_9SYNE Length = 469 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 392 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 451 Query: 385 LYRLK 371 L +L+ Sbjct: 452 LRKLR 456 [156][TOP] >UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL Length = 575 Score = 67.4 bits (163), Expect = 7e-10 Identities = 33/76 (43%), Positives = 51/76 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++KQ MR+ + VL+ L +E+++IR RFG EDG ++L EIGE+ G+SRERI Q+E+ A Sbjct: 497 LTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 556 Query: 385 LYRLKKCLVSQGLDAY 338 +L+ + L Y Sbjct: 557 FRKLQNKKKTINLQQY 572 [157][TOP] >UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTR4_PHYPA Length = 591 Score = 67.4 bits (163), Expect = 7e-10 Identities = 32/76 (42%), Positives = 53/76 (69%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 +Q++++ V VL L P+ER ++RLRFG +DG+ R+L EIG +F ++RERI Q+E +A+ Sbjct: 512 RQVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMR 571 Query: 379 RLKKCLVSQGLDAYAD 332 +L++ + L Y D Sbjct: 572 KLRQPSRNGVLREYLD 587 [158][TOP] >UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora RepID=B1X5Q2_PAUCH Length = 460 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 383 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 442 Query: 385 LYRLK 371 L +L+ Sbjct: 443 LRKLR 447 [159][TOP] >UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus RepID=Q7VD88_PROMA Length = 438 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 361 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 420 Query: 385 LYRLK 371 L +L+ Sbjct: 421 LRKLR 425 [160][TOP] >UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9313 RepID=Q7V698_PROMM Length = 461 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 384 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKA 443 Query: 385 LYRLK 371 L +L+ Sbjct: 444 LRKLR 448 [161][TOP] >UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. NATL2A RepID=Q46GS6_PROMT Length = 420 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 341 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 400 Query: 385 LYRLK 371 L +L+ Sbjct: 401 LRKLR 405 [162][TOP] >UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JS52_SYNJA Length = 404 Score = 67.0 bits (162), Expect = 9e-10 Identities = 30/65 (46%), Positives = 49/65 (75%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + +VL L P+ER +++LR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 327 VAKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 386 Query: 385 LYRLK 371 L +L+ Sbjct: 387 LRKLR 391 [163][TOP] >UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BEB7_PROM4 Length = 425 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 348 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 407 Query: 385 LYRLK 371 L +L+ Sbjct: 408 LRKLR 412 [164][TOP] >UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9303 RepID=A2C7M0_PROM3 Length = 444 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 367 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKA 426 Query: 385 LYRLK 371 L +L+ Sbjct: 427 LRKLR 431 [165][TOP] >UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. NATL1A RepID=A2C0V5_PROM1 Length = 420 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/65 (47%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+K L+R + VL L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +A Sbjct: 341 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 400 Query: 385 LYRLK 371 L +L+ Sbjct: 401 LRKLR 405 [166][TOP] >UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum RepID=C1F1D9_ACIC5 Length = 597 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/73 (42%), Positives = 49/73 (67%) Frame = -3 Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371 ++ + VL L P+E R+I++RFG EDG E +L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 520 LKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLR 579 Query: 370 KCLVSQGLDAYAD 332 S+ L A+ D Sbjct: 580 HPSRSRKLRAFVD 592 [167][TOP] >UniRef100_C0U2T9 RNA polymerase sigma factor n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=C0U2T9_9ACTO Length = 429 Score = 67.0 bits (162), Expect = 9e-10 Identities = 33/78 (42%), Positives = 52/78 (66%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS LM+ + +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ Sbjct: 352 VSFTLMQDQLTSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 411 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ SQ L Y D Sbjct: 412 MSKLRHPSRSQVLRDYLD 429 [168][TOP] >UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YB48_9FIRM Length = 408 Score = 67.0 bits (162), Expect = 9e-10 Identities = 33/78 (42%), Positives = 51/78 (65%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 + QL++ + NVL L +E +++RLRFG DG R+L E+G+ F ++RERI Q+E +AL Sbjct: 330 NNQLLKDEINNVLQGLTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKAL 389 Query: 382 YRLKKCLVSQGLDAYADK 329 +LK S+ L + DK Sbjct: 390 RKLKHPTRSKRLRDFVDK 407 [169][TOP] >UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DL79_THEEB Length = 418 Score = 66.6 bits (161), Expect = 1e-09 Identities = 30/65 (46%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER +++LR+G +DG ++L EIG++F ++RERI Q+E +A Sbjct: 341 VSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 400 Query: 385 LYRLK 371 L +L+ Sbjct: 401 LRKLR 405 [170][TOP] >UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus RepID=Q7NKZ2_GLOVI Length = 350 Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/65 (47%), Positives = 47/65 (72%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V + LM + + ++L L P+ER ++RLR+G DG R+L E+G+ FGL+RERI Q+E RA Sbjct: 268 VVRDLMNQDLESLLQTLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERIRQIEARA 327 Query: 385 LYRLK 371 L +L+ Sbjct: 328 LRKLR 332 [171][TOP] >UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ Length = 370 Score = 66.6 bits (161), Expect = 1e-09 Identities = 30/64 (46%), Positives = 47/64 (73%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S L+R + VL L +E++++RLRFG +DG R+L E+G+IFG++RERI Q+E +AL Sbjct: 294 SYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKAL 353 Query: 382 YRLK 371 +L+ Sbjct: 354 RKLR 357 [172][TOP] >UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24T06_DESHY Length = 367 Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/74 (41%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ + VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L Sbjct: 294 LLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 353 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y + Sbjct: 354 RHPSRSKKLKDYLE 367 [173][TOP] >UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HPM3_CYAP4 Length = 378 Score = 66.6 bits (161), Expect = 1e-09 Identities = 30/65 (46%), Positives = 48/65 (73%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VSK L+R + VL L P+ER +++LR+G +DG ++L EIG++F ++RERI Q+E +A Sbjct: 301 VSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 360 Query: 385 LYRLK 371 L +L+ Sbjct: 361 LRKLR 365 [174][TOP] >UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FTY1_DESHD Length = 372 Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/74 (41%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ + VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L Sbjct: 299 LLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 358 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y + Sbjct: 359 RHPSRSKKLKDYLE 372 [175][TOP] >UniRef100_B7K407 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 8801 RepID=B7K407_CYAP8 Length = 328 Score = 66.6 bits (161), Expect = 1e-09 Identities = 28/66 (42%), Positives = 53/66 (80%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L +L++ Sbjct: 311 LAQLRR 316 [176][TOP] >UniRef100_B1WQ73 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQ73_CYAA5 Length = 328 Score = 66.6 bits (161), Expect = 1e-09 Identities = 28/66 (42%), Positives = 53/66 (80%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L +L++ Sbjct: 311 LAQLRR 316 [177][TOP] >UniRef100_B0JU57 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JU57_MICAN Length = 328 Score = 66.6 bits (161), Expect = 1e-09 Identities = 29/66 (43%), Positives = 51/66 (77%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++L+R+ + N+L +L P++R +I LRFG DG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L L++ Sbjct: 311 LAHLRR 316 [178][TOP] >UniRef100_A5UXX4 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UXX4_ROSS1 Length = 349 Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/64 (48%), Positives = 45/64 (70%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S QL+RR + L++L +ERRII LR+G DG+ R+L E+G + G++RER Q+E AL Sbjct: 273 SHQLLRRDLAAALDRLNERERRIIDLRYGLVDGQRRTLEEVGRVLGMTRERARQIEAEAL 332 Query: 382 YRLK 371 RL+ Sbjct: 333 RRLR 336 [179][TOP] >UniRef100_Q4BYC5 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4BYC5_CROWT Length = 328 Score = 66.6 bits (161), Expect = 1e-09 Identities = 28/66 (42%), Positives = 53/66 (80%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELLRQDLRNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRMNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L +L++ Sbjct: 311 LAQLRR 316 [180][TOP] >UniRef100_C7QM79 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QM79_CYAP0 Length = 328 Score = 66.6 bits (161), Expect = 1e-09 Identities = 28/66 (42%), Positives = 53/66 (80%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L +L++ Sbjct: 311 LAQLRR 316 [181][TOP] >UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2APA0_TSUPA Length = 330 Score = 66.6 bits (161), Expect = 1e-09 Identities = 33/77 (42%), Positives = 51/77 (66%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V LM V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E Sbjct: 253 VISTLMHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREV 312 Query: 385 LYRLKKCLVSQGLDAYA 335 + +L+ + L AYA Sbjct: 313 MSKLRNGERADRLRAYA 329 [182][TOP] >UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MPW5_9FIRM Length = 358 Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/77 (40%), Positives = 51/77 (66%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S+ L++ + +L L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL Sbjct: 282 SRTLLKEQLSEILGTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQIEAKAL 341 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S+ L + D Sbjct: 342 RKLRHPSRSKKLKDFLD 358 [183][TOP] >UniRef100_A8YCV8 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YCV8_MICAE Length = 328 Score = 66.6 bits (161), Expect = 1e-09 Identities = 29/66 (43%), Positives = 51/66 (77%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++L+R+ + N+L +L P++R +I LRFG DG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L L++ Sbjct: 311 LAHLRR 316 [184][TOP] >UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753 RepID=A7VZA6_9CLOT Length = 365 Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/74 (41%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ + VL+ L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 292 LLKEQLAEVLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKL 351 Query: 373 KKCLVSQGLDAYAD 332 + S+ L + D Sbjct: 352 RHPSRSKKLKDFLD 365 [185][TOP] >UniRef100_A3IZB7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IZB7_9CHRO Length = 328 Score = 66.6 bits (161), Expect = 1e-09 Identities = 28/66 (42%), Positives = 53/66 (80%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L +L++ Sbjct: 311 LAQLRR 316 [186][TOP] >UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPB3_9FIRM Length = 368 Score = 66.6 bits (161), Expect = 1e-09 Identities = 29/64 (45%), Positives = 46/64 (71%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S L++ + VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL Sbjct: 292 SFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKAL 351 Query: 382 YRLK 371 +L+ Sbjct: 352 RKLR 355 [187][TOP] >UniRef100_A0ZN70 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZN70_NODSP Length = 327 Score = 66.6 bits (161), Expect = 1e-09 Identities = 29/65 (44%), Positives = 50/65 (76%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 +++ +R+ + N+L +L P++R+++ LRFG EDG E SL+++GE LSRER+ QLE++AL Sbjct: 252 TQEFLRQDLNNLLAELTPQQRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQAL 311 Query: 382 YRLKK 368 L++ Sbjct: 312 AHLRR 316 [188][TOP] >UniRef100_A0YXP5 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YXP5_9CYAN Length = 333 Score = 66.6 bits (161), Expect = 1e-09 Identities = 29/66 (43%), Positives = 51/66 (77%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V+ +L+R+ + +++++L P++R +I LR+G EDG+E SLS++G +SRER+ QLEN+A Sbjct: 257 VTHELLRQDLKSLIDELTPQQREVILLRYGLEDGKELSLSKVGARMSISRERVRQLENQA 316 Query: 385 LYRLKK 368 L L++ Sbjct: 317 LNHLRR 322 [189][TOP] >UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR Length = 564 Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/63 (49%), Positives = 44/63 (69%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 K+ M++ + VL L P+E ++IR RFG EDG ++L EIGE+ G+SRERI Q+E A Sbjct: 488 KEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFR 547 Query: 379 RLK 371 +LK Sbjct: 548 KLK 550 [190][TOP] >UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR Length = 567 Score = 66.6 bits (161), Expect = 1e-09 Identities = 29/63 (46%), Positives = 44/63 (69%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 K+ M++ + VL L P+E +++R RFG EDG ++L EIGE+ G+SRER+ Q+E A Sbjct: 491 KEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFR 550 Query: 379 RLK 371 +LK Sbjct: 551 KLK 553 [191][TOP] >UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764 Length = 316 Score = 66.2 bits (160), Expect = 2e-09 Identities = 28/62 (45%), Positives = 46/62 (74%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL + Sbjct: 242 ELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRK 301 Query: 376 LK 371 L+ Sbjct: 302 LR 303 [192][TOP] >UniRef100_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 66.2 bits (160), Expect = 2e-09 Identities = 31/78 (39%), Positives = 50/78 (64%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V L++ + VL L P+ER +I LRFG +DG ++L E+ + +G++RERI Q+E R Sbjct: 440 VDANLLKERIGEVLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARG 499 Query: 385 LYRLKKCLVSQGLDAYAD 332 L +L++ S L+ +AD Sbjct: 500 LLKLRQPTRSCRLEEFAD 517 [193][TOP] >UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPY6_OCEIH Length = 380 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 306 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 366 LRHPSRSKRLKDFLD 380 [194][TOP] >UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii RepID=Q74IZ4_LACJO Length = 372 Score = 66.2 bits (160), Expect = 2e-09 Identities = 31/77 (40%), Positives = 51/77 (66%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S +L++ + VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL Sbjct: 296 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S L + D Sbjct: 356 RKLRHPSRSNQLKDFLD 372 [195][TOP] >UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WHD0_BACSK Length = 373 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 299 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 358 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 359 LRHPSRSKRLKDFLD 373 [196][TOP] >UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L6R1_STAHJ Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [197][TOP] >UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1 Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [198][TOP] >UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Z9_EXISA Length = 364 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 290 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 349 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 350 LRHPSRSKRLKDFLD 364 [199][TOP] >UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E6V2_MACCJ Length = 366 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 292 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 351 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 352 LRHPSRSKRLKDFMD 366 [200][TOP] >UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DNN2_STACT Length = 369 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 295 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 354 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 355 LRHPSRSKRLKDFMD 369 [201][TOP] >UniRef100_B2J7M4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7M4_NOSP7 Length = 327 Score = 66.2 bits (160), Expect = 2e-09 Identities = 29/65 (44%), Positives = 49/65 (75%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 +++ +R+ + N+L +L P++R ++ LRFG EDG E SL+++GE LSRER+ QLE++AL Sbjct: 252 NQEFLRQDLNNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQAL 311 Query: 382 YRLKK 368 L++ Sbjct: 312 AHLRR 316 [202][TOP] >UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YL80_EXIS2 Length = 361 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 287 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 346 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 347 LRHPSRSKRLKDFLD 361 [203][TOP] >UniRef100_B1MYH4 RNA polymerase sigma factor n=1 Tax=Leuconostoc citreum KM20 RepID=B1MYH4_LEUCK Length = 432 Score = 66.2 bits (160), Expect = 2e-09 Identities = 31/75 (41%), Positives = 50/75 (66%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +++R + +VL L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL + Sbjct: 354 EMLRDQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 413 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 414 LRHPSRSKQLKDFMD 428 [204][TOP] >UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1U1_DESAP Length = 360 Score = 66.2 bits (160), Expect = 2e-09 Identities = 32/74 (43%), Positives = 50/74 (67%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R + +VL L +E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L Sbjct: 287 LLREQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKL 346 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 347 RHPSRSKKLKDYLD 360 [205][TOP] >UniRef100_A9WI86 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WI86_CHLAA Length = 360 Score = 66.2 bits (160), Expect = 2e-09 Identities = 31/76 (40%), Positives = 50/76 (65%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 ++++ + LN+L +ER+I++LR+G DG+ R+L E+G FG++RER Q+E AL Sbjct: 285 QKMLHAELTAALNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALR 344 Query: 379 RLKKCLVSQGLDAYAD 332 RL+ V Q L +Y D Sbjct: 345 RLRHPSVGQRLHSYLD 360 [206][TOP] >UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSG9_ALKMQ Length = 372 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/74 (40%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ ++ VL+ L P+E++++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 299 LLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y + Sbjct: 359 RHPSRSKKLKDYLE 372 [207][TOP] >UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium RepID=A1UF13_MYCSK Length = 319 Score = 66.2 bits (160), Expect = 2e-09 Identities = 31/77 (40%), Positives = 52/77 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 V +L+ + +VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E Sbjct: 242 VISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREV 301 Query: 385 LYRLKKCLVSQGLDAYA 335 + +L+ + L +YA Sbjct: 302 MAKLRNGERADRLRSYA 318 [208][TOP] >UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni PSU-1 RepID=Q6J2R2_OENOB Length = 465 Score = 66.2 bits (160), Expect = 2e-09 Identities = 29/64 (45%), Positives = 46/64 (71%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S Q+++ + VL L +E ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +AL Sbjct: 388 SDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKAL 447 Query: 382 YRLK 371 +L+ Sbjct: 448 RKLR 451 [209][TOP] >UniRef100_P71106 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus RepID=P71106_CHLAU Length = 346 Score = 66.2 bits (160), Expect = 2e-09 Identities = 31/76 (40%), Positives = 50/76 (65%) Frame = -3 Query: 559 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 380 ++++ + LN+L +ER+I++LR+G DG+ R+L E+G FG++RER Q+E AL Sbjct: 271 QKMLHAELTAALNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALR 330 Query: 379 RLKKCLVSQGLDAYAD 332 RL+ V Q L +Y D Sbjct: 331 RLRHPSVGQRLHSYLD 346 [210][TOP] >UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus RepID=O08332_STAAU Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [211][TOP] >UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus A9299 RepID=C8M7C3_STAAU Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [212][TOP] >UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus aureus A6300 RepID=C8LTM9_STAAU Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [213][TOP] >UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus subsp. aureus 68-397 RepID=C8ACF1_STAAU Length = 342 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 268 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 327 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 328 LRHPSRSKRLKDFMD 342 [214][TOP] >UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [215][TOP] >UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis W23144 RepID=C5QXG6_STAEP Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [216][TOP] >UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis M23864:W1 RepID=C5QSV2_STAEP Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [217][TOP] >UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603 RepID=C4WCC7_STAWA Length = 367 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 293 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 352 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 353 LRHPSRSKRLKDFMD 367 [218][TOP] >UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119 RepID=C2M0X4_STAHO Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [219][TOP] >UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC 33200 RepID=C2E6R7_LACJO Length = 372 Score = 66.2 bits (160), Expect = 2e-09 Identities = 31/77 (40%), Positives = 51/77 (66%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S +L++ + VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL Sbjct: 296 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S L + D Sbjct: 356 RKLRHPSRSNQLKDFLD 372 [220][TOP] >UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri RepID=Q042Y7_LACGA Length = 373 Score = 66.2 bits (160), Expect = 2e-09 Identities = 31/77 (40%), Positives = 51/77 (66%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S +L++ + VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL Sbjct: 297 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 382 YRLKKCLVSQGLDAYAD 332 +L+ S L + D Sbjct: 357 RKLRHPSRSNQLKDFLD 373 [221][TOP] >UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14 RepID=B9CVA9_STACP Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [222][TOP] >UniRef100_B4AVJ3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AVJ3_9CHRO Length = 328 Score = 66.2 bits (160), Expect = 2e-09 Identities = 28/66 (42%), Positives = 53/66 (80%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++LMR+ + ++L +L P++R ++ LRFG +DG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELMRQDLQDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L +L++ Sbjct: 311 LSQLRR 316 [223][TOP] >UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni RepID=A0NJA0_OENOE Length = 458 Score = 66.2 bits (160), Expect = 2e-09 Identities = 29/64 (45%), Positives = 46/64 (71%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S Q+++ + VL L +E ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +AL Sbjct: 381 SDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKAL 440 Query: 382 YRLK 371 +L+ Sbjct: 441 RKLR 444 [224][TOP] >UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis RepID=RPOD_STAEQ Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [225][TOP] >UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus subsp. aureus N315 RepID=RPOD_STAAN Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [226][TOP] >UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus RepID=RPOD_STAA8 Length = 368 Score = 66.2 bits (160), Expect = 2e-09 Identities = 30/75 (40%), Positives = 52/75 (69%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 354 LRHPSRSKRLKDFMD 368 [227][TOP] >UniRef100_UPI0001B44D01 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis KZN 605 RepID=UPI0001B44D01 Length = 377 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/78 (41%), Positives = 53/78 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ Sbjct: 300 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 359 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ SQ L Y D Sbjct: 360 MSKLRHPSRSQVLRDYLD 377 [228][TOP] >UniRef100_UPI0001AF41EF RNA polymerase sigma factor n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF41EF Length = 518 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/78 (41%), Positives = 53/78 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ Sbjct: 441 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 500 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ SQ L Y D Sbjct: 501 MSKLRHPSRSQVLRDYLD 518 [229][TOP] >UniRef100_UPI000190610E RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis T17 RepID=UPI000190610E Length = 530 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/78 (41%), Positives = 53/78 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ Sbjct: 453 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 512 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ SQ L Y D Sbjct: 513 MSKLRHPSRSQVLRDYLD 530 [230][TOP] >UniRef100_UPI00019014BB RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis 02_1987 RepID=UPI00019014BB Length = 197 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/78 (41%), Positives = 53/78 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ Sbjct: 120 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 179 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ SQ L Y D Sbjct: 180 MSKLRHPSRSQVLRDYLD 197 [231][TOP] >UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R970_THETN Length = 372 Score = 65.9 bits (159), Expect = 2e-09 Identities = 29/74 (39%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 299 MLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 358 Query: 373 KKCLVSQGLDAYAD 332 + S+ L + D Sbjct: 359 RHPSRSKKLKDFLD 372 [232][TOP] >UniRef100_Q55525 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803 RepID=Q55525_SYNY3 Length = 345 Score = 65.9 bits (159), Expect = 2e-09 Identities = 28/66 (42%), Positives = 51/66 (77%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++ MR+ + N+L +L P+++ ++ +RFG DG+E SL++IG+ +SRER+ QLEN+A Sbjct: 268 ITQESMRQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVRQLENQA 327 Query: 385 LYRLKK 368 L +LK+ Sbjct: 328 LAQLKR 333 [233][TOP] >UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X96_LACSS Length = 369 Score = 65.9 bits (159), Expect = 2e-09 Identities = 28/64 (43%), Positives = 48/64 (75%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL Sbjct: 293 SYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 352 Query: 382 YRLK 371 +L+ Sbjct: 353 RKLR 356 [234][TOP] >UniRef100_Q0RDY7 RNA polymerase sigma factor n=1 Tax=Frankia alni ACN14a RepID=Q0RDY7_FRAAA Length = 373 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/73 (43%), Positives = 47/73 (64%) Frame = -3 Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371 M+ + NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+ Sbjct: 301 MQDEIENVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELR 360 Query: 370 KCLVSQGLDAYAD 332 K V+ L + D Sbjct: 361 KPAVAGRLREFLD 373 [235][TOP] >UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03F68_PEDPA Length = 379 Score = 65.9 bits (159), Expect = 2e-09 Identities = 30/75 (40%), Positives = 51/75 (68%) Frame = -3 Query: 556 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 377 +L++ + VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL + Sbjct: 305 ELLKEQLEGVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 364 Query: 376 LKKCLVSQGLDAYAD 332 L+ S+ L + D Sbjct: 365 LRHPSRSKQLKDFLD 379 [236][TOP] >UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXH1_HALOH Length = 358 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/74 (43%), Positives = 51/74 (68%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R + +VL+ L +E+R++ LRFG EDG R+L E+G+ FG++RERI Q+E +AL +L Sbjct: 285 LLREQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKL 344 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y + Sbjct: 345 RHPSRSKKLKDYLE 358 [237][TOP] >UniRef100_B7K8N4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K8N4_CYAP7 Length = 328 Score = 65.9 bits (159), Expect = 2e-09 Identities = 28/66 (42%), Positives = 53/66 (80%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 ++++LMR+ + ++L +L P++R ++ LRFG +DG+E SL++IG+ +SRER+ QLE++A Sbjct: 251 ITQELMRQDLHDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQA 310 Query: 385 LYRLKK 368 L +L++ Sbjct: 311 LSQLRR 316 [238][TOP] >UniRef100_B2HLZ7 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M RepID=B2HLZ7_MYCMM Length = 501 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/78 (41%), Positives = 53/78 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ Sbjct: 424 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 483 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ SQ L Y D Sbjct: 484 MSKLRHPSRSQVLRDYLD 501 [239][TOP] >UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MG96_ALKOO Length = 372 Score = 65.9 bits (159), Expect = 2e-09 Identities = 30/74 (40%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L++ ++ VL+ L P+E++++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 299 LLKEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y + Sbjct: 359 RHPSRSKKLKDYLE 372 [240][TOP] >UniRef100_A8L6K9 RNA polymerase sigma factor n=1 Tax=Frankia sp. EAN1pec RepID=A8L6K9_FRASN Length = 423 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/73 (43%), Positives = 47/73 (64%) Frame = -3 Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371 M+ + NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+ Sbjct: 351 MQDEIDNVLGALNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELR 410 Query: 370 KCLVSQGLDAYAD 332 K V+ L + D Sbjct: 411 KPAVAGRLREFLD 423 [241][TOP] >UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3U6_PELTS Length = 363 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/74 (43%), Positives = 49/74 (66%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 L+R + VL L +E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L Sbjct: 290 LLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 349 Query: 373 KKCLVSQGLDAYAD 332 + S+ L Y D Sbjct: 350 RHPSRSKKLKDYLD 363 [242][TOP] >UniRef100_A0PT58 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99 RepID=A0PT58_MYCUA Length = 501 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/78 (41%), Positives = 53/78 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ Sbjct: 424 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 483 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ SQ L Y D Sbjct: 484 MSKLRHPSRSQVLRDYLD 501 [243][TOP] >UniRef100_Q8GGT8 RNA polymerase sigma factor n=1 Tax=Frankia sp. ACN14a RepID=Q8GGT8_9ACTO Length = 385 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/73 (43%), Positives = 47/73 (64%) Frame = -3 Query: 550 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 371 M+ + NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+ Sbjct: 313 MQDEIENVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELR 372 Query: 370 KCLVSQGLDAYAD 332 K V+ L + D Sbjct: 373 KPAVAGRLREFLD 385 [244][TOP] >UniRef100_Q60158 RNA polymerase sigma factor n=1 Tax=Mycobacterium bovis RepID=Q60158_MYCBO Length = 528 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/78 (41%), Positives = 53/78 (67%) Frame = -3 Query: 565 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 386 VS L++ + +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ Sbjct: 451 VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKT 510 Query: 385 LYRLKKCLVSQGLDAYAD 332 + +L+ SQ L Y D Sbjct: 511 MSKLRHPSRSQVLRDYLD 528 [245][TOP] >UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705 RepID=C7TJI1_LACRL Length = 416 Score = 65.9 bits (159), Expect = 2e-09 Identities = 28/64 (43%), Positives = 48/64 (75%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL Sbjct: 340 SYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 399 Query: 382 YRLK 371 +L+ Sbjct: 400 RKLR 403 [246][TOP] >UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q7U2_9THEO Length = 357 Score = 65.9 bits (159), Expect = 2e-09 Identities = 29/74 (39%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 284 MLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 343 Query: 373 KKCLVSQGLDAYAD 332 + S+ L + D Sbjct: 344 RHPSRSKKLKDFLD 357 [247][TOP] >UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9 RepID=C6PMA8_9THEO Length = 357 Score = 65.9 bits (159), Expect = 2e-09 Identities = 29/74 (39%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 284 MLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 343 Query: 373 KKCLVSQGLDAYAD 332 + S+ L + D Sbjct: 344 RHPSRSKKLKDFLD 357 [248][TOP] >UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS Length = 357 Score = 65.9 bits (159), Expect = 2e-09 Identities = 29/74 (39%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 284 MLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 343 Query: 373 KKCLVSQGLDAYAD 332 + S+ L + D Sbjct: 344 RHPSRSKKLKDFLD 357 [249][TOP] >UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter RepID=B0K6Y0_THEPX Length = 357 Score = 65.9 bits (159), Expect = 2e-09 Identities = 29/74 (39%), Positives = 52/74 (70%) Frame = -3 Query: 553 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 374 +++ +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L Sbjct: 284 MLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 343 Query: 373 KKCLVSQGLDAYAD 332 + S+ L + D Sbjct: 344 RHPSRSKKLKDFLD 357 [250][TOP] >UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp. paracasei 8700:2 RepID=C5F5B8_LACPA Length = 352 Score = 65.9 bits (159), Expect = 2e-09 Identities = 28/64 (43%), Positives = 48/64 (75%) Frame = -3 Query: 562 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 383 S +L++ + +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL Sbjct: 276 SYELLKEQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 335 Query: 382 YRLK 371 +L+ Sbjct: 336 RKLR 339