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[1][TOP]
>UniRef100_B9I6T5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6T5_POPTR
          Length = 499

 Score =  177 bits (449), Expect = 5e-43
 Identities = 84/107 (78%), Positives = 98/107 (91%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T+H+++AD + EN PW GVDEWALKEEVNKLI+  L EREREI+RLY+GLD
Sbjct: 393 PSLNGLPGETHHSYIADNRLENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHGLD 452

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+CLTWE+ISKR+GLSRERVRQVGLVALEKLKHAARK +LEAML +H
Sbjct: 453 KECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGKLEAMLVKH 499

[2][TOP]
>UniRef100_B9SDF8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
           RepID=B9SDF8_RICCO
          Length = 508

 Score =  177 bits (448), Expect = 7e-43
 Identities = 84/107 (78%), Positives = 98/107 (91%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T+H+++AD   EN PW GVD+WALK+EVNKLIN+TL ERE+EI+RLYYGLD
Sbjct: 402 PSLNGLPGETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLD 461

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
            + LTWE+ISKRIGLSRERVRQVGLVALEKLKHAARKK+LEAML +H
Sbjct: 462 NESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508

[3][TOP]
>UniRef100_B9IPY1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPY1_POPTR
          Length = 509

 Score =  176 bits (446), Expect = 1e-42
 Identities = 82/107 (76%), Positives = 98/107 (91%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T+H+++AD + EN PW GVDEWALKEEVNKLI+ TL ERE+EI+RLY+GLD
Sbjct: 403 PSLNGLPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLD 462

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           ++CLTWE+ISKR+GLSRERVRQVGLVALEKLKHAARK+  EAML +H
Sbjct: 463 QECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509

[4][TOP]
>UniRef100_Q9SLX3 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX3_TOBAC
          Length = 502

 Score =  176 bits (445), Expect = 2e-42
 Identities = 83/107 (77%), Positives = 96/107 (89%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++AD + ENIPW GVDEW LK+EVN LI+ TL EREREIVRLYYGLD
Sbjct: 396 PSLNGLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLD 455

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
            +CLTWE+IS+RIGLSRERVRQVGLVALEKLKHAARK+ L+AML +H
Sbjct: 456 NECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVKH 502

[5][TOP]
>UniRef100_UPI0001984E9A PREDICTED: hypothetical protein isoform 2 n=1 Tax=Vitis vinifera
           RepID=UPI0001984E9A
          Length = 496

 Score =  172 bits (436), Expect = 2e-41
 Identities = 82/107 (76%), Positives = 96/107 (89%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYYGLD
Sbjct: 390 PSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLD 449

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
            +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK  +EAML ++
Sbjct: 450 NECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 496

[6][TOP]
>UniRef100_UPI0001984E99 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera
           RepID=UPI0001984E99
          Length = 507

 Score =  172 bits (436), Expect = 2e-41
 Identities = 82/107 (76%), Positives = 96/107 (89%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYYGLD
Sbjct: 401 PSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLD 460

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
            +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK  +EAML ++
Sbjct: 461 NECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 507

[7][TOP]
>UniRef100_A7PAZ2 Chromosome chr16 scaffold_10, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PAZ2_VITVI
          Length = 486

 Score =  172 bits (436), Expect = 2e-41
 Identities = 82/107 (76%), Positives = 96/107 (89%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYYGLD
Sbjct: 380 PSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYGLD 439

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
            +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK  +EAML ++
Sbjct: 440 NECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 486

[8][TOP]
>UniRef100_Q9SLX4 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX4_TOBAC
          Length = 508

 Score =  169 bits (429), Expect = 1e-40
 Identities = 80/106 (75%), Positives = 94/106 (88%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++AD   EN PW GVD WALK+EVN LI+ TL +REREI+RLYYGLD
Sbjct: 402 PSLNGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLD 461

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 261
            +CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK++L+AML +
Sbjct: 462 NECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQLDAMLIK 507

[9][TOP]
>UniRef100_Q9FPH1 At1g64860 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH1_ARATH
          Length = 502

 Score =  169 bits (427), Expect = 2e-40
 Identities = 79/107 (73%), Positives = 98/107 (91%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYYGLD
Sbjct: 396 PSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD 455

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 456 KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[10][TOP]
>UniRef100_O24629 AT1G64860 protein n=2 Tax=Arabidopsis thaliana RepID=O24629_ARATH
          Length = 502

 Score =  169 bits (427), Expect = 2e-40
 Identities = 79/107 (73%), Positives = 98/107 (91%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYYGLD
Sbjct: 396 PSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD 455

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 456 KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[11][TOP]
>UniRef100_O22576 RNA polymerase sigma subunit 1 n=1 Tax=Arabidopsis thaliana
           RepID=O22576_ARATH
          Length = 502

 Score =  169 bits (427), Expect = 2e-40
 Identities = 79/107 (73%), Positives = 98/107 (91%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYYGLD
Sbjct: 396 PSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD 455

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 456 KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[12][TOP]
>UniRef100_O22057 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
           RepID=O22057_ARATH
          Length = 502

 Score =  169 bits (427), Expect = 2e-40
 Identities = 79/107 (73%), Positives = 98/107 (91%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYYGLD
Sbjct: 396 PSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLD 455

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 456 KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[13][TOP]
>UniRef100_O49935 Sig1 protein n=1 Tax=Sinapis alba RepID=O49935_SINAL
          Length = 481

 Score =  168 bits (425), Expect = 3e-40
 Identities = 79/107 (73%), Positives = 98/107 (91%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T+H+++AD + EN PW G D  ALK+EV+KLI+VTL EREREI+RLYYGLD
Sbjct: 375 PSLNGLPGETHHSYIADNRLENNPWHGYDALALKDEVSKLISVTLGEREREIIRLYYGLD 434

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+CLTWE+IS+RIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 435 KECLTWEDISQRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 481

[14][TOP]
>UniRef100_Q7EY08 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
           Japonica Group RepID=Q7EY08_ORYSJ
          Length = 388

 Score =  154 bits (390), Expect = 4e-36
 Identities = 70/107 (65%), Positives = 91/107 (85%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++ D+   N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+ 
Sbjct: 282 PSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIG 341

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 342 KQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 388

[15][TOP]
>UniRef100_Q0J7T6 Os08g0163400 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q0J7T6_ORYSJ
          Length = 520

 Score =  154 bits (390), Expect = 4e-36
 Identities = 70/107 (65%), Positives = 91/107 (85%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++ D+   N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+ 
Sbjct: 414 PSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIG 473

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 474 KQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 520

[16][TOP]
>UniRef100_O48655 Plastid RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
           Group RepID=O48655_ORYSJ
          Length = 519

 Score =  154 bits (390), Expect = 4e-36
 Identities = 70/107 (65%), Positives = 91/107 (85%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++ D+   N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+ 
Sbjct: 413 PSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIG 472

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 473 KQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 519

[17][TOP]
>UniRef100_A3BPX7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=A3BPX7_ORYSJ
          Length = 420

 Score =  154 bits (390), Expect = 4e-36
 Identities = 70/107 (65%), Positives = 91/107 (85%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++ D+   N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+ 
Sbjct: 314 PSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIG 373

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 374 KQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 420

[18][TOP]
>UniRef100_Q7EY07 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
           RepID=Q7EY07_ORYSJ
          Length = 342

 Score =  154 bits (390), Expect = 4e-36
 Identities = 70/107 (65%), Positives = 91/107 (85%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPG+T H+++ D+   N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+ 
Sbjct: 236 PSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGIG 295

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 296 KQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 342

[19][TOP]
>UniRef100_C5YHG2 Putative uncharacterized protein Sb07g004340 n=1 Tax=Sorghum
           bicolor RepID=C5YHG2_SORBI
          Length = 500

 Score =  150 bits (378), Expect = 9e-35
 Identities = 71/107 (66%), Positives = 89/107 (83%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPGDT H+++ D+   N PW G +E  LKEEVN LIN TL ERER+I+RLY+G+ 
Sbjct: 394 PSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGIG 453

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR+K L+A+L E+
Sbjct: 454 KQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLDALLEEY 500

[20][TOP]
>UniRef100_Q9ZTI3 RNA polymerase sigma factor 1 (Fragment) n=1 Tax=Zea mays
           RepID=Q9ZTI3_MAIZE
          Length = 398

 Score =  148 bits (374), Expect = 3e-34
 Identities = 70/107 (65%), Positives = 89/107 (83%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPGDT H+++ D+   N PW G +E  LKEEVN LIN TL ERER+I+RLY+G+ 
Sbjct: 292 PSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGIG 351

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR++ L+A+L E+
Sbjct: 352 KQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARREHLDALLEEY 398

[21][TOP]
>UniRef100_B4FP19 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FP19_MAIZE
          Length = 496

 Score =  148 bits (374), Expect = 3e-34
 Identities = 70/107 (65%), Positives = 89/107 (83%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPGDT H+++ D+   N PW G +E  LKEEVN LIN TL ERER+I+RLY+G+ 
Sbjct: 390 PSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGIG 449

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR++ L+A+L E+
Sbjct: 450 KQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARREHLDALLEEY 496

[22][TOP]
>UniRef100_Q9ZP70 Chloroplast sigma factor (Fragment) n=1 Tax=Triticum aestivum
           RepID=Q9ZP70_WHEAT
          Length = 461

 Score =  148 bits (373), Expect = 3e-34
 Identities = 66/107 (61%), Positives = 89/107 (83%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPGDT H+++ D+   N PW G +EW LKEEVNKL+N  L ERER+I++LY+G+ 
Sbjct: 355 PSLNGLPGDTLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGIG 414

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGL+A+EKLK  AR+K+L+A+L ++
Sbjct: 415 KQCHTWEDISRQFGLSRERVRQVGLIAMEKLKQRARRKKLDALLQDY 461

[23][TOP]
>UniRef100_O24348 Plastid RNA polymerase sigma factor n=1 Tax=Sorghum bicolor
           RepID=O24348_SORBI
          Length = 500

 Score =  148 bits (373), Expect = 3e-34
 Identities = 70/107 (65%), Positives = 88/107 (82%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPGDT H+++ D+   N PW G +E  LKEEVN LIN  L ERER+I+RLY+G+ 
Sbjct: 394 PSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNNLINSNLNERERDIIRLYHGIG 453

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR+K L+A+L E+
Sbjct: 454 KQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLDALLEEY 500

[24][TOP]
>UniRef100_Q9ZTI2 RNA polymerase sigma factor 2 (Fragment) n=1 Tax=Zea mays
           RepID=Q9ZTI2_MAIZE
          Length = 349

 Score =  144 bits (362), Expect = 6e-33
 Identities = 68/107 (63%), Positives = 86/107 (80%)
 Frame = -3

Query: 578 PSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD 399
           PSLNGLPGDT H+++ D+   N PW G +E  LKEEVN LIN  L ERER+I+RLY+G+ 
Sbjct: 243 PSLNGLPGDTLHSYIEDQNVANDPWHGFEEMYLKEEVNNLINSNLNERERDIIRLYHGIG 302

Query: 398 KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           K+C TWE+IS++ GLSRERVRQV LVA+EKLKHAAR+K L A+L ++
Sbjct: 303 KQCHTWEDISRQFGLSRERVRQVRLVAMEKLKHAARRKHLNALLEDY 349

[25][TOP]
>UniRef100_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens
           RepID=A9SW01_PHYPA
          Length = 677

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 44/100 (44%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
 Frame = -3

Query: 557 GDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL---DKKCL 387
           G+T H+ VAD+  EN PW  V+   +K++V+KL+   L  RER+IVRL+YG+   D   +
Sbjct: 574 GETLHSLVADRDIENQPWTIVERMLMKDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVM 633

Query: 386 TWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           + E IS R G+SRERVRQ+   A+ KL+  +R++ L+  L
Sbjct: 634 SLESISYRYGVSRERVRQLETAAMRKLQIKSREQGLDRYL 673

[26][TOP]
>UniRef100_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
           stuttgartiensis RepID=Q1Q6A4_9BACT
          Length = 491

 Score = 67.4 bits (163), Expect = 8e-10
 Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
 Frame = -3

Query: 566 GLPGDT-YHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKK 393
           G  G+T + +F+ DK+ +  P        LKE++ K+++ TL  REREI++L +G+ D  
Sbjct: 387 GSDGETMFEDFIQDKKID-APIFLAQRSLLKEQIQKVLD-TLSYREREIIKLRFGISDGY 444

Query: 392 CLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             + EEI KR  ++RER+RQ+  +AL KL+H  R ++LE  L
Sbjct: 445 THSLEEIGKRFNITRERIRQIEAIALRKLQHPVRSRKLEGFL 486

[27][TOP]
>UniRef100_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
           Az-Fu1 RepID=C1DV14_SULAA
          Length = 282

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
 Frame = -3

Query: 491 EWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVAL 315
           E  LKEE  +L+NV L EREREI++L YGL+  +  T EE+ + +G+SRERVRQ+   AL
Sbjct: 207 ESTLKEEFERLLNV-LDEREREIIKLRYGLEGLEPKTLEEVGEMLGISRERVRQLEQRAL 265

Query: 314 EKLKHAARKKELEAML 267
           +KLK  A KK L+  L
Sbjct: 266 KKLKAVALKKHLQNFL 281

[28][TOP]
>UniRef100_B2KBW8 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191
           RepID=B2KBW8_ELUMP
          Length = 571

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +F+ DK   N P +   ++  K+EV++++N TL ERE +I+RL +G+D     T EE+ K
Sbjct: 479 DFIEDKAGAN-PTVTASDFLRKQEVSEVLN-TLSEREAKIIRLRFGIDSGYPRTLEEVGK 536

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RERVRQ+   A+ KL+H +R K L+
Sbjct: 537 MFNVTRERVRQIEAKAIRKLRHPSRTKMLK 566

[29][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
           PSU-1 RepID=Q6J2R2_OENOB
          Length = 465

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 366
           +F+ D + E+ P     +  LK+++ +++  TL ERE  ++RL +GL D K  T EE+ +
Sbjct: 373 DFIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKTRTLEEVGR 430

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 261
             G++RER+RQ+   AL KL+H +R K+L+  + E
Sbjct: 431 VFGVTRERIRQIEAKALRKLRHPSRSKQLKDFMEE 465

[30][TOP]
>UniRef100_B9XH89 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514
           RepID=B9XH89_9BACT
          Length = 614

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
 Frame = -3

Query: 551 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEE 375
           T+ +F+ DK +EN P        LK+++N ++  TL ERER IV L +GL D    T EE
Sbjct: 515 TFGDFIEDKSAEN-PSDMTSYSLLKDKLNDVL-ATLTERERRIVELRFGLVDGYARTLEE 572

Query: 374 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           + K+  ++RER+RQ+   AL KL+H  R + L+  L
Sbjct: 573 VGKQYKVTRERIRQIEAKALRKLRHPTRVRHLKGFL 608

[31][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
           RepID=A0NJA0_OENOE
          Length = 458

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 366
           +F+ D + E+ P     +  LK+++ +++  TL ERE  ++RL +GL D K  T EE+ +
Sbjct: 366 DFIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKTRTLEEVGR 423

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 261
             G++RER+RQ+   AL KL+H +R K+L+  + E
Sbjct: 424 VFGVTRERIRQIEAKALRKLRHPSRSKQLKDFMEE 458

[32][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
            E1 RepID=C9M9L0_9BACT
          Length = 969

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542  NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 366
            +F+ D+   +   +  D   L+E++ +++N  L +RERE++R  +GL D +  T EE+ +
Sbjct: 878  DFIEDRSLPSPEDVAADN-LLQEQIEEMLNA-LSDREREVLRYRFGLEDGRSYTLEEVGR 935

Query: 365  RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
            R G++RER+RQ+   AL KL+H +R K+L   L
Sbjct: 936  RFGVTRERIRQIEAKALRKLRHPSRSKKLRDFL 968

[33][TOP]
>UniRef100_C1ZU97 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodothermus
           marinus DSM 4252 RepID=C1ZU97_RHOMR
          Length = 279

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
 Frame = -3

Query: 536 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISKRI 360
           V   + +  P  G+ E +LK ++ + ++ TL  RE EI+RLY+G+ ++  LT EEI +R 
Sbjct: 189 VLPNEEDTSPDEGLMEESLKIDIERALS-TLHPREAEIIRLYFGIGREHPLTLEEIGQRF 247

Query: 359 GLSRERVRQVGLVALEKLKHAARKKELE 276
           GL+RERVRQ+   AL KL+   R++EL+
Sbjct: 248 GLTRERVRQIKEKALRKLRQKHRREELQ 275

[34][TOP]
>UniRef100_C1ZAZ0 RNA polymerase sigma factor n=1 Tax=Planctomyces limnophilus DSM
           3776 RepID=C1ZAZ0_PLALI
          Length = 550

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 39/105 (37%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
 Frame = -3

Query: 548 YHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEI 372
           + +F+ D  +E+ P +   +  LK++++ ++  TL  REREI++L YGL D    T EE+
Sbjct: 449 FGDFIEDDNTES-PVMAATQEMLKDKIDNVLK-TLTYREREIIKLRYGLGDGYTYTLEEV 506

Query: 371 SKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH*YDGLII 237
            +   ++RERVRQ+   A+ KL+H  R K+L+  L     DGL+I
Sbjct: 507 GRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKGFL-----DGLMI 546

[35][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
           RepID=C6PJN3_9THEO
          Length = 273

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
 Frame = -3

Query: 569 NGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-K 393
           NG  GD     +ADK++ + P   ++   LKE+V+++++ TL  RE +++RL +GLD  K
Sbjct: 177 NGKLGD----IIADKEAVD-PVEELESMLLKEQVDEVLS-TLAPREEKVLRLRFGLDDGK 230

Query: 392 CLTWEEISKRIG-LSRERVRQVGLVALEKLKHAARKKELEAML 267
             T EE+ K +G +SRERVRQ+   AL++L+H  R + L+  L
Sbjct: 231 IRTLEEVGKELGGISRERVRQIETKALKRLRHPNRSRRLKEFL 273

[36][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
           RepID=B0P3M7_9CLOT
          Length = 363

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
 Frame = -3

Query: 524 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIG 357
           Q EN+P +  D  A   LKE++++++  TL ERE++++RL +GLD  +  T EE+ K   
Sbjct: 275 QDENVP-VPADAAAFTLLKEQLDEVLG-TLTEREQKVLRLRFGLDDSRARTLEEVGKEFN 332

Query: 356 LSRERVRQVGLVALEKLKHAARKKELEAML 267
           ++RER+RQ+   AL KL+H +R ++L+  L
Sbjct: 333 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 362

[37][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
           wolfei str. Goettingen RepID=Q0AWU4_SYNWW
          Length = 358

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++E+ P        L+E ++ ++N TL ERE +++RL +GLD  +  T EE+ +
Sbjct: 267 DFITDEEAES-PEESASFVLLREHLDGILN-TLTEREEKVLRLRFGLDDGRPRTLEEVGQ 324

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K+L+
Sbjct: 325 EFGVTRERIRQIEAKALRKLRHPSRSKKLK 354

[38][TOP]
>UniRef100_C4CVR1 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Spirosoma
           linguale DSM 74 RepID=C4CVR1_9SPHI
          Length = 287

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
 Frame = -3

Query: 536 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 360
           V +   E+ P  G+   +L++EV + ++ TL +RE +++ LY+GL+ +  +T EEI ++ 
Sbjct: 197 VLENDGEDKPDSGLINDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255

Query: 359 GLSRERVRQVGLVALEKLKHAARKKELEAML 267
            L+RERVRQ+   A+ +L+H +R K L+  L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKTYL 286

[39][TOP]
>UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991
           RepID=A8RBC2_9FIRM
          Length = 398

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWA----LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWE 378
           +F+ DK++     +  DE+A    LK+E+N ++   L ERE +++RL +GL D +  T E
Sbjct: 305 DFIEDKEA-----LSPDEYANNQLLKDEINTVLQ-GLTEREEKVLRLRFGLYDGRTRTLE 358

Query: 377 EISKRIGLSRERVRQVGLVALEKLKHAARKKELE 276
           E+ K   ++RER+RQ+   AL KLKH  R K L+
Sbjct: 359 EVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLK 392

[40][TOP]
>UniRef100_B1GZP5 RNA polymerase sigma factor n=1 Tax=uncultured Termite group 1
           bacterium phylotype Rs-D17 RepID=B1GZP5_UNCTG
          Length = 573

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +F+ D+ S N P +   ++ L+ E+ K++  TL  RE EI+RL YG+      T EE+ K
Sbjct: 482 DFIEDQNSPN-PVVKTQQYRLQLELEKVL-ATLAPREAEIIRLRYGIGIGYPSTLEEVGK 539

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           + G++RERVRQ+   A+ KLK+  R K L   L
Sbjct: 540 KFGITRERVRQIEAKAIRKLKYPRRNKSLREYL 572

[41][TOP]
>UniRef100_A5KKN8 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
           RepID=A5KKN8_9FIRM
          Length = 273

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
 Frame = -3

Query: 554 DTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWE 378
           D+  +FV D+ SE  P   +D    KEEV +L+  TL +RE+E++ L +GL K +  T E
Sbjct: 187 DSLGDFVEDR-SETTPEDAMDVLVRKEEVQELLE-TLNDREKEVISLRFGLGKDRTYTLE 244

Query: 377 EISKRIGLSRERVRQVGLVALEKLKHAA 294
           EI + +G++RERVRQ+   A+EKL+  A
Sbjct: 245 EIGESLGITRERVRQIESKAMEKLRKKA 272

[42][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
           nucleatum RepID=Q8RE13_FUSNN
          Length = 331

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D+++ + P+   +   L+EE++ ++  TL  RE +++R  YGLD     T EE+ K
Sbjct: 239 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 296

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 297 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 326

[43][TOP]
>UniRef100_Q1PW65 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
           stuttgartiensis RepID=Q1PW65_9BACT
          Length = 551

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 35/96 (36%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
 Frame = -3

Query: 551 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEE 375
           ++ +F+ D+++E+ P     +  LK+++  ++  TL  REREI++L YG+ D    T EE
Sbjct: 451 SFGDFIEDEKAES-PVAAATQEMLKDKIESVLE-TLTYREREIIKLRYGIGDGYTYTLEE 508

Query: 374 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           + K   ++RERVRQ+   A+ KL+H  R ++LE  L
Sbjct: 509 VGKIFKVTRERVRQIEAKAVRKLQHPIRSRKLEGFL 544

[44][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
           RepID=D0BQ42_9FUSO
          Length = 416

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D+++ + P+   +   L+EE++ ++  TL  RE +++R  YGLD     T EE+ K
Sbjct: 324 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 381

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 382 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 411

[45][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
           RepID=C7XNV3_9FUSO
          Length = 418

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D+++ + P+   +   L+EE++ ++  TL  RE +++R  YGLD     T EE+ K
Sbjct: 326 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 383

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 384 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 413

[46][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
           RepID=C3WX07_9FUSO
          Length = 417

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D+++ + P+   +   L+EE++ ++  TL  RE +++R  YGLD     T EE+ K
Sbjct: 325 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 382

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 383 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 412

[47][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
           RepID=C3WPP3_9FUSO
          Length = 340

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D+++ + P+   +   L+EE++ ++  TL  RE +++R  YGLD     T EE+ K
Sbjct: 248 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 305

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 306 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 335

[48][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
           RepID=B0ME78_9FIRM
          Length = 370

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
 Frame = -3

Query: 524 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIG 357
           Q +N+P +  D  A   LKE++++++  TL ERE++++RL +GLD  +  T EE+ K   
Sbjct: 282 QDDNVP-VPADAAAFTLLKEQLSEVLG-TLTEREQKVLRLRFGLDDSRARTLEEVGKEFN 339

Query: 356 LSRERVRQVGLVALEKLKHAARKKELEAML 267
           ++RER+RQ+   AL KL+H +R ++L+  L
Sbjct: 340 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 369

[49][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
          Length = 418

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D+++ + P+   +   L+EE++ ++  TL  RE +++R  YGLD     T EE+ K
Sbjct: 326 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 383

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 384 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 413

[50][TOP]
>UniRef100_Q11U62 RNA polymerase sigma-70 factor n=1 Tax=Cytophaga hutchinsonii ATCC
           33406 RepID=Q11U62_CYTH3
          Length = 287

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
 Frame = -3

Query: 536 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 360
           V +  SE+ P   +   +L+ EV + ++ TL +RE +++ LY+GL+ +  +T EEI ++ 
Sbjct: 197 VLENSSESAPDSSLMNDSLRREVQRALS-TLTQREADVISLYFGLNGEHSMTLEEIGEKF 255

Query: 359 GLSRERVRQVGLVALEKLKHAARKKELEAML 267
            L+RERVRQ+   A+ +L+H +R K L+  L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286

[51][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
           ATCC 19414 RepID=C8NZE6_ERYRH
          Length = 459

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWA----LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWE 378
           +F+ DK +     +  DE+A    LKEE+ K++   L ERE +++RL +GL D +  T E
Sbjct: 366 DFIEDKDA-----LSPDEYANNQLLKEEI-KMVLEGLTEREEKVLRLRFGLEDGRTRTLE 419

Query: 377 EISKRIGLSRERVRQVGLVALEKLKHAARKKEL 279
           E+ K   ++RER+RQ+   AL KLKH  R K L
Sbjct: 420 EVGKEFNVTRERIRQIEAKALRKLKHPTRSKRL 452

[52][TOP]
>UniRef100_C6W468 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Dyadobacter fermentans DSM 18053 RepID=C6W468_DYAFD
          Length = 287

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
 Frame = -3

Query: 536 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 360
           V +   E+ P  G+   +L++EV + +  TL +RE +++ LY+GL+ +  +T EEI ++ 
Sbjct: 197 VLENDLEDKPDSGLVNESLRKEVQRAL-CTLTQREADVIALYFGLNGEHAMTLEEIGEKF 255

Query: 359 GLSRERVRQVGLVALEKLKHAARKKELEAML 267
            L+RERVRQ+   A+ +L+H +R K L+  L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHVSRSKALKTYL 286

[53][TOP]
>UniRef100_C3WID8 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 2_1_31
           RepID=C3WID8_9FUSO
          Length = 269

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D+++ + P+   +   L+EE++ ++  TL  RE +++R  YGLD     T EE+ K
Sbjct: 177 DFVEDQKTTS-PYEATNRAILREELDGVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 234

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 235 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 264

[54][TOP]
>UniRef100_Q6AK94 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila
           RepID=Q6AK94_DESPS
          Length = 447

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 34/93 (36%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
 Frame = -3

Query: 551 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEE 375
           T  +F+ +++S++ P+  V    L   V ++++ TL +RE +I+RL +G+ +K   T EE
Sbjct: 353 TLGDFLENQESQS-PYEAVQNRELSGRVTEILS-TLSDREEKIIRLRFGIGEKAEYTLEE 410

Query: 374 ISKRIGLSRERVRQVGLVALEKLKHAARKKELE 276
           I KR  +SRER+RQ+   AL +L+H++R+ +L+
Sbjct: 411 IGKRFNVSRERIRQIEKKALNRLRHSSRRDKLK 443

[55][TOP]
>UniRef100_C5CDI4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1
           RepID=C5CDI4_KOSOT
          Length = 405

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 36/103 (34%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
 Frame = -3

Query: 572 LNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DK 396
           ++G    T  +FV D+  E  P     +  L+E+++++++ TL  RE  ++++ YGL D 
Sbjct: 296 ISGDEESTMGDFVHDESIEK-PEEAAIKMLLREQIDEVLD-TLSPREAMVLKMRYGLLDG 353

Query: 395 KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           K  T EE+ +   ++RER+RQ+ + AL KL+H +R K+L+A+L
Sbjct: 354 KTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALL 396

[56][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
           25644 RepID=C2E8V2_9LACO
          Length = 373

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQIESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 360 RHPSRSKQLKDFL 372

[57][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
           RepID=RPOD_CLOAB
          Length = 378

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ K++N TL  RE +++RL +GLD  +  T EE+ K   ++RER+RQ+   AL KL
Sbjct: 306 LKEQLLKILN-TLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 364

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 365 RHPSRSKKLKDYL 377

[58][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
           F0254 RepID=C9MZ09_9FUSO
          Length = 392

 Score = 60.5 bits (145), Expect = 9e-08
 Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKCL-TWEEISK 366
           +FV D +  N P+       LKE++++++  TL ERE  ++R  YGLD     T EE+ K
Sbjct: 301 DFVEDDKFAN-PYDATTRVLLKEQLDEVLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGK 358

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 359 IFNVTRERIRQIEVKALRKLRHPSRRKKLE 388

[59][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
          Length = 392

 Score = 60.5 bits (145), Expect = 9e-08
 Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKCL-TWEEISK 366
           +FV D +  N P+       LKE++++++  TL ERE  ++R  YGLD     T EE+ K
Sbjct: 301 DFVEDDKFAN-PYDATTRILLKEQLDEVLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGK 358

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 359 IFNVTRERIRQIEVKALRKLRHPSRRKKLE 388

[60][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
           oral taxon 786 str. D14 RepID=C6IWD8_9BACL
          Length = 325

 Score = 60.5 bits (145), Expect = 9e-08
 Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ ++++ TL ERE  ++RL +G+D  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 253 LKEQLEEVLD-TLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKL 311

Query: 305 KHAARKKELE 276
           +H +R K L+
Sbjct: 312 RHPSRSKRLK 321

[61][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
           DSM 15897 RepID=UPI000196B4EB
          Length = 418

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LK+E+N+++ + L +RE +++RL +GLD  +  T EE+ K   ++RER+RQ+   AL KL
Sbjct: 345 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKALRKL 403

Query: 305 KHAARKKELEAML 267
           KH +R K L+  L
Sbjct: 404 KHPSRSKRLKDFL 416

[62][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
          Length = 377

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL ERE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 364 RHPSRSKRLKDFL 376

[63][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001693157
          Length = 375

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL ERE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[64][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
           sakei 23K RepID=Q38X96_LACSS
          Length = 369

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 297 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 356 RHPSRSKQLKDFL 368

[65][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
           RepID=Q1WTP3_LACS1
          Length = 372

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 300 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 359 RHPSRSKQLKDFL 371

[66][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
           RepID=C6CTW1_PAESJ
          Length = 376

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL ERE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 304 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 362

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 363 RHPSRSKRLKDFL 375

[67][TOP]
>UniRef100_C1A7K2 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27
           RepID=C1A7K2_GEMAT
          Length = 286

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           AL E + + +   L ERE +I+RLY+G+D    +T EEI  ++G++RERVRQ+   AL +
Sbjct: 213 ALTEAIEESLG-GLKEREAKILRLYFGIDGADPMTLEEIGSQLGITRERVRQIKEKALSR 271

Query: 308 LKHAARKKELEAML 267
           L+H +R K LE+ L
Sbjct: 272 LRHVSRSKSLESFL 285

[68][TOP]
>UniRef100_B2VA41 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
           YO3AOP1 RepID=B2VA41_SULSY
          Length = 281

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 38/96 (39%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
 Frame = -3

Query: 551 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEE 375
           T  + ++ K +E+I    ++E  + +E+  +++V L ERE+EI+++ YGLD ++  T EE
Sbjct: 187 TLLDVLSKKGTEDIEKELIEE-TIHKELESMLDV-LDEREKEIIKMRYGLDGEEPKTLEE 244

Query: 374 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           + +++G+SRERVRQ+   AL+KLK  A KK L+  L
Sbjct: 245 VGEKLGISRERVRQLEQRALKKLKAVALKKHLKDFL 280

[69][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
           35185 RepID=C9LTA9_9FIRM
          Length = 375

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ ++++ TL ERE  ++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEEVLD-TLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R ++L+  L
Sbjct: 362 RHPSRSRKLKDFL 374

[70][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
           RepID=C7TJI1_LACRL
          Length = 416

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 403 RHPSRSKQLKDFL 415

[71][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
           786 str. D14 RepID=C6J365_9BACL
          Length = 374

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL ERE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 302 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 361 RHPSRSKRLKDFL 373

[72][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
           paracasei 8700:2 RepID=C5F5B8_LACPA
          Length = 352

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 280 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 338

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 339 RHPSRSKQLKDFL 351

[73][TOP]
>UniRef100_C4FJU2 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium
           yellowstonense SS-5 RepID=C4FJU2_9AQUI
          Length = 78

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 34/76 (44%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
 Frame = -3

Query: 491 EWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIGLSRERVRQVGLVAL 315
           E  + EE+  +++V L ERE+EI+++ YGL+ ++  T EE+ +++G+SRERVRQ+   AL
Sbjct: 3   EETIHEELESMLDV-LDEREKEIIKMRYGLNGEESRTLEEVGEKLGISRERVRQLEQRAL 61

Query: 314 EKLKHAARKKELEAML 267
           +KLK  A KK L+  L
Sbjct: 62  KKLKAVALKKHLKDFL 77

[74][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
           RepID=C2JXD0_LACRH
          Length = 416

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 403 RHPSRSKQLKDFL 415

[75][TOP]
>UniRef100_C2FTX8 RNA polymerase sigma-70 factor n=2 Tax=Sphingobacterium
           spiritivorum RepID=C2FTX8_9SPHI
          Length = 286

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
 Frame = -3

Query: 497 VDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISKRIGLSRERVRQVGLV 321
           +DE +L EE+ + +  TL EREREI+ L++GL     L+ EEI ++  L+RERVRQ+   
Sbjct: 210 IDE-SLSEEIKRSL-ATLTEREREIIVLFFGLGSNHQLSLEEIGEKFNLTRERVRQIKDK 267

Query: 320 ALEKLKHAARKKELEAML 267
           AL++L+H +R K L++ L
Sbjct: 268 ALQRLRHTSRSKILKSYL 285

[76][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
           RepID=B3WEK4_LACCB
          Length = 422

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 350 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 408

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 409 RHPSRSKQLKDFL 421

[77][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
           11741 RepID=C2EFJ0_9LACO
          Length = 372

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 300 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 359 RHPSRSKQLKDFL 371

[78][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
           RepID=C0XLP2_LACHI
          Length = 389

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 317 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 375

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 376 RHPSRSKQLKDFL 388

[79][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
           11577 RepID=C0WTG9_LACBU
          Length = 389

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 317 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 375

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 376 RHPSRSKQLKDFL 388

[80][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
           RepID=B9YB48_9FIRM
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 366
           +F+ DK + + P    +   LK+E+N ++   L ERE +++RL +GL D +  T EE+ K
Sbjct: 315 DFIEDKDAMS-PDQYANNQLLKDEINNVLQ-GLTEREEKVLRLRFGLYDGRTRTLEEVGK 372

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KLKH  R K L
Sbjct: 373 EFNVTRERIRQIEAKALRKLKHPTRSKRL 401

[81][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
          Length = 368

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL ERE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 296 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 355 RHPSRSKRLKDFL 367

[82][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
           RepID=C7TCR3_LACRG
          Length = 416

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 403 RHPSRSKQLKDFL 415

[83][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
           RepID=B3YVL5_BACCE
          Length = 373

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
 Frame = -3

Query: 566 GLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KC 390
           G  GD++     + Q    P        LKE++  +++ TL +RE  ++RL +GLD  + 
Sbjct: 273 GEEGDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331

Query: 389 LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
            T EE+ K  G++RER+RQ+   AL KL+H +R K L+  L
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372

[84][TOP]
>UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552
           RepID=B1C3P6_9FIRM
          Length = 415

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LK+E+N+++ + L +RE +++RL +GLD  +  T EE+ K   ++RER+RQ+   AL KL
Sbjct: 342 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKALRKL 400

Query: 305 KHAARKKELEAML 267
           KH +R K L+  L
Sbjct: 401 KHPSRSKRLKDFL 413

[85][TOP]
>UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM
          Length = 417

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LK+E+N+++ + L +RE +++RL +GLD  +  T EE+ K   ++RER+RQ+   AL KL
Sbjct: 344 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKALRKL 402

Query: 305 KHAARKKELEAML 267
           KH +R K L+  L
Sbjct: 403 KHPSRSKRLKDFL 415

[86][TOP]
>UniRef100_A3HT44 RNA polymerase sigma factor rpoD (Sigma-A) n=1 Tax=Algoriphagus sp.
           PR1 RepID=A3HT44_9SPHI
          Length = 287

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 32/91 (35%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
 Frame = -3

Query: 536 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 360
           V +   +  P  G+   +L++EV + ++ TL +RE +++ LY+GL+ +  +T EEI ++ 
Sbjct: 197 VLENDGDEKPDDGLMNDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255

Query: 359 GLSRERVRQVGLVALEKLKHAARKKELEAML 267
            L+RERVRQ+   A+ +L+H +R K L+  L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKTLKPYL 286

[87][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
           RepID=RPSD2_BACSP
          Length = 377

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL ERE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 364 RHPSRSKRLKDFL 376

[88][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001694293
          Length = 367

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL ERE  ++RL +GL D +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 295 LKEQLEHVLD-TLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKL 353

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 354 RHPSRSKRLKDFL 366

[89][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
          Length = 370

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/73 (41%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           L+E++++++  TL ERE++++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 298 LREQLDEVLK-TLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKL 356

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 357 RHPSRSKKLKDFL 369

[90][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
           RepID=C9L8C6_RUMHA
          Length = 330

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = -3

Query: 524 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 357
           Q +N+P +  D  A   LKE++ +++  TL ERE++++RL +GLD  +  T EE+ K   
Sbjct: 242 QDDNVP-VPADAAAFTLLKEQLVEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGKEFN 299

Query: 356 LSRERVRQVGLVALEKLKHAARKKELEAML 267
           ++RER+RQ+   AL KL+H +R ++L+  L
Sbjct: 300 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 329

[91][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
           RepID=C9B6G3_ENTFC
          Length = 369

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 297 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 356 RHPSRSKQLKDFL 368

[92][TOP]
>UniRef100_C7M639 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M639_CAPOD
          Length = 287

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L+ E+ + +  TL  RE ++VRLY+GL D+  +T EEI +   L+RERVRQ+   A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLSDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272

Query: 308 LKHAARKKELEAML 267
           LKH +R K L+  L
Sbjct: 273 LKHTSRSKILKTYL 286

[93][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
           RepID=C7CSZ1_ENTFA
          Length = 368

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 296 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 355 RHPSRSKQLKDFL 367

[94][TOP]
>UniRef100_C6JI10 RNA polymerase sigma factor n=1 Tax=Fusobacterium varium ATCC 27725
           RepID=C6JI10_FUSVA
          Length = 414

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D +  N P+   +   L+E++N ++N TL  RE  ++R  YGLD     T EE+ K
Sbjct: 323 DFVEDHKMLN-PYELTNRSLLREQLNGVLN-TLSSREERVLRYRYGLDDGSPKTLEEVGK 380

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 381 IFKVTRERIRQIEVKALRKLRHPSRRKKLE 410

[95][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
           RepID=C2HA56_ENTFC
          Length = 369

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 297 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 356 RHPSRSKQLKDFL 368

[96][TOP]
>UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
           RepID=C0ET20_9FIRM
          Length = 367

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKEE+ + +  +L ERER +++L +GLD  K  T EE+ K   ++RER+RQ+   AL KL
Sbjct: 295 LKEELEEAM-ASLTERERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKL 353

Query: 305 KHAARKKELEAML 267
           +H +R ++L+  L
Sbjct: 354 RHPSRSRKLKDFL 366

[97][TOP]
>UniRef100_C0BG96 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Flavobacteria
           bacterium MS024-2A RepID=C0BG96_9BACT
          Length = 287

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L+ E+ + +  TL  RE ++VRLY+GL D+  +T EEI +   L+RERVRQ+   A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272

Query: 308 LKHAARKKELEAML 267
           LKH +R K L+  L
Sbjct: 273 LKHTSRSKILKTYL 286

[98][TOP]
>UniRef100_C6Y2J2 RNA polymerase sigma factor, sigma-70 family n=2 Tax=Pedobacter
           RepID=C6Y2J2_PEDHD
          Length = 286

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISKRIGLSRERVRQVGLVALEK 309
           +L EE+ + ++ TL EREREI+ L++GL     L+ EEI ++  L+RERVRQ+   AL++
Sbjct: 213 SLSEEIKRSLS-TLTEREREIIVLFFGLSTNHPLSLEEIGEKFNLTRERVRQIKDKALQR 271

Query: 308 LKHAARKKELEAML 267
           L+H +R K L++ L
Sbjct: 272 LRHTSRSKILKSYL 285

[99][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
           RepID=A5ZYP8_9FIRM
          Length = 330

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = -3

Query: 524 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 357
           Q +N+P +  D  A   LKE++ +++  TL ERE++++RL +GLD  +  T EE+ K   
Sbjct: 242 QDDNVP-VPADAAAFTLLKEQLIEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGKEFN 299

Query: 356 LSRERVRQVGLVALEKLKHAARKKELEAML 267
           ++RER+RQ+   AL KL+H +R ++L+  L
Sbjct: 300 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 329

[100][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
           RepID=A3IBK5_9BACI
          Length = 375

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +I+ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVID-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[101][TOP]
>UniRef100_A1ZP06 RpoD n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP06_9SPHI
          Length = 287

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
 Frame = -3

Query: 536 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 360
           V + +SE  P   +   +L++EV + ++ TL +RE +++ LY+GL+ +  +T EEI ++ 
Sbjct: 197 VLENESEVKPDSELMNDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255

Query: 359 GLSRERVRQVGLVALEKLKHAARKKELEAML 267
            L+RERVRQ+   A+ +L+H +R K L+  L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286

[102][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
           RepID=RPOD_ENTFA
          Length = 368

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 296 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 355 RHPSRSKQLKDFL 367

[103][TOP]
>UniRef100_UPI000185CB93 RNA polymerase sigma factor RpoD n=1 Tax=Capnocytophaga sputigena
           ATCC 33612 RepID=UPI000185CB93
          Length = 287

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L+ E+ + +  TL  RE +++RLY+GL D+  +T EEI +   L+RERVRQ+   A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVIRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272

Query: 308 LKHAARKKELEAML 267
           LKH +R K L+  L
Sbjct: 273 LKHTSRSKILKTYL 286

[104][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
           RepID=Q74IZ4_LACJO
          Length = 372

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ ++++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 281 DFIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 338

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             G++RER+RQ+   AL KL+H +R  +L+  L
Sbjct: 339 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371

[105][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKT5_MOOTA
          Length = 361

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 32/93 (34%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+ ++  P        L+E++ +++N +L  RE+ ++RL +GLD  +  T EE+ +
Sbjct: 270 DFIEDEDAQ-APAEAASFMLLREQLEEVLN-SLTPREKRVLRLRFGLDDGRARTLEEVGQ 327

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             G++RER+RQ+   AL KL+H +R K+L+  L
Sbjct: 328 EFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360

[106][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
           25745 RepID=Q03F68_PEDPA
          Length = 379

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 307 LKEQLEGVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 365

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 366 RHPSRSKQLKDFL 378

[107][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
           SI RepID=A5D3U6_PELTS
          Length = 363

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 29/73 (39%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           L+E++++++  TL ERE+ ++RL +GLD  +  T EE+ ++ G++RER+RQ+    L KL
Sbjct: 291 LREQLDEVLK-TLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 349

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 350 RHPSRSKKLKDYL 362

[108][TOP]
>UniRef100_C6IUR4 RNA polymerase sigma factor rpoD n=1 Tax=Bacteroides sp. 1_1_6
           RepID=C6IUR4_9BACE
          Length = 286

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 28/73 (38%), Positives = 53/73 (72%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +L  E+++ ++ TL ERE+EI+++++G+ ++ +T EEI  + GL+RERVRQ+   A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272

Query: 305 KHAARKKELEAML 267
           + + R K L++ L
Sbjct: 273 RQSNRSKLLKSYL 285

[109][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
           ATCC 33313 RepID=C5RBJ7_WEIPA
          Length = 378

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GL D +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 306 LKEQLESVLD-TLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 364

Query: 305 KHAARKKELEAML 267
           +H +R K+L   L
Sbjct: 365 RHPSRSKQLRDFL 377

[110][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
           RepID=C4VL08_9LACO
          Length = 364

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ ++++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 273 DFIEDKDATS-PEQHASYEMLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 330

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             G++RER+RQ+   AL KL+H +R  +L+  L
Sbjct: 331 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363

[111][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
           14600 RepID=C4G971_9FIRM
          Length = 614

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 366
           +F+ D+ +  +P        LKE++N++++ TL ERER+++ L +GL D +  T EE+ K
Sbjct: 523 DFIQDENAP-VPAEAATFTLLKEQLNEVLD-TLTERERKVLILRFGLEDGRGRTLEEVGK 580

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
              ++RER+RQ+   AL KL+H +R ++L+  L
Sbjct: 581 EFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 613

[112][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
           DSM 12112 RepID=C4DZ35_9FUSO
          Length = 379

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D +  N P        LKE++N ++   L ERE +++RL YGLD     T EE+ K
Sbjct: 287 DFVEDDKFLN-PHEATVRSVLKEKLNDVLRKELNEREEQVLRLRYGLDDGAPKTLEEVGK 345

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + A+ KLK+  +KK LE
Sbjct: 346 IFDVTRERIRQIEVKAINKLKNIKKKKGLE 375

[113][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
           RepID=C2FI52_LACPL
          Length = 368

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 296 LKEQLEGVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 355 RHPSRSKQLKDFL 367

[114][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
           33200 RepID=C2E6R7_LACJO
          Length = 372

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ ++++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 281 DFIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 338

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             G++RER+RQ+   AL KL+H +R  +L+  L
Sbjct: 339 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371

[115][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
           RepID=C2E1K8_9LACO
          Length = 364

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ ++++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 273 DFIEDKDATS-PEQHASYEMLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 330

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             G++RER+RQ+   AL KL+H +R  +L+  L
Sbjct: 331 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363

[116][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
           RepID=Q042Y7_LACGA
          Length = 373

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ ++++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 282 DFIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 339

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             G++RER+RQ+   AL KL+H +R  +L+  L
Sbjct: 340 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 372

[117][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
           43243 RepID=B7AQM8_9BACE
          Length = 448

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 34/90 (37%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
 Frame = -3

Query: 524 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 357
           Q +N+P +  +E A   LKE++ +++  TL ERE++++RL +GLD  +  T EE+ +   
Sbjct: 360 QDDNVP-VPAEEAASTILKEQLVEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGREFN 417

Query: 356 LSRERVRQVGLVALEKLKHAARKKELEAML 267
           ++RER+RQ+   AL KL+H +R ++L   L
Sbjct: 418 VTRERIRQIEAKALRKLRHPSRSRKLRDFL 447

[118][TOP]
>UniRef100_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
           17216 RepID=B0N062_9BACT
          Length = 286

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 30/78 (38%), Positives = 53/78 (67%)
 Frame = -3

Query: 500 GVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLV 321
           G+   +L  EV++ +  TL ERER+I++ ++G+    +T EEI ++  L+RERVRQ+   
Sbjct: 209 GLINESLSTEVDRALE-TLTERERDIIKYFFGIGCSEMTLEEIGEKFDLTRERVRQIKEK 267

Query: 320 ALEKLKHAARKKELEAML 267
           A+ +L+H++R K L++ L
Sbjct: 268 AIRRLRHSSRSKLLKSYL 285

[119][TOP]
>UniRef100_A2TVH6 Putative sigma factor A n=1 Tax=Dokdonia donghaensis MED134
           RepID=A2TVH6_9FLAO
          Length = 287

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +LK E+ + +  TL  RE ++VRLY+GL D++ ++ EEI +   L+RERVRQ+   A+ +
Sbjct: 214 SLKTEIERALE-TLTPREADVVRLYFGLGDQRPMSLEEIGETFDLTRERVRQIKEKAIRR 272

Query: 308 LKHAARKKELEAML 267
           LKH +R K L+  L
Sbjct: 273 LKHTSRSKILKTYL 286

[120][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
           A1055 RepID=UPI0001B41595
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[121][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
           RepID=UPI0001851148
          Length = 337

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 265 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 323

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 324 RHPSRSKRLKDFL 336

[122][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
          Length = 316

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ ++++ TL ERE  ++RL +GL D +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 244 LKEQLEEVLD-TLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKL 302

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 303 RHPSRSKRLKDFL 315

[123][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8EPY6_OCEIH
          Length = 380

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 308 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 367 RHPSRSKRLKDFL 379

[124][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
           14580 RepID=Q65H81_BACLD
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[125][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WHD0_BACSK
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[126][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
           RepID=C5D4R8_GEOSW
          Length = 374

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 361 RHPSRSKRLKDFL 373

[127][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
           RepID=C4L3Z9_EXISA
          Length = 364

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 292 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 350

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 351 RHPSRSKRLKDFL 363

[128][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
           RepID=C3LKX1_BACAC
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[129][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
           100599 RepID=C0ZB92_BREBN
          Length = 376

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 304 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 362

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 363 RHPSRSKRLKDFL 375

[130][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
           RepID=B9IY60_BACCQ
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[131][TOP]
>UniRef100_B8E0E4 RNA polymerase sigma factor n=1 Tax=Dictyoglomus turgidum DSM 6724
           RepID=B8E0E4_DICTD
          Length = 413

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +LK+++ +L+N  L EREREI++L +GL D +  T EE+ K   ++RER+RQ+   AL +
Sbjct: 339 SLKKDIEELLN-ELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRR 397

Query: 308 LKHAARKKELEAML 267
           L+H +R K+++  L
Sbjct: 398 LRHPSRSKKIKDYL 411

[132][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
           RepID=B7GH73_ANOFW
          Length = 372

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 300 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 359 RHPSRSKRLKDFL 371

[133][TOP]
>UniRef100_B5YES0 RNA polymerase sigma factor n=1 Tax=Dictyoglomus thermophilum
           H-6-12 RepID=B5YES0_DICT6
          Length = 413

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +LK+++ +L+N  L EREREI++L +GL D +  T EE+ K   ++RER+RQ+   AL +
Sbjct: 339 SLKKDIEELLN-ELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRR 397

Query: 308 LKHAARKKELEAML 267
           L+H +R K+++  L
Sbjct: 398 LRHPSRSKKIKDYL 411

[134][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
           255-15 RepID=B1YL80_EXIS2
          Length = 361

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 289 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 347

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 348 RHPSRSKRLKDFL 360

[135][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
           RepID=B1HTI2_LYSSC
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[136][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
           RepID=A8FFA5_BACP2
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[137][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
           FZB42 RepID=A7Z6T5_BACA2
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[138][TOP]
>UniRef100_A7HK63 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum
           Rt17-B1 RepID=A7HK63_FERNB
          Length = 372

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 33/92 (35%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 366
           +F+AD +S   P        ++EE++KL+  TL +RE++++++ YGL + K +T EE+ +
Sbjct: 276 DFIAD-ESIGSPKKEAIRTLMREEIDKLLE-TLNDREKKVLKMRYGLYNGKPMTLEEVGQ 333

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAM 270
             G++RER+RQ+ + AL KL+H +R + L  +
Sbjct: 334 FFGVTRERIRQIEVKALRKLRHPSRSRYLRLL 365

[139][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
           RepID=A7GSY8_BACCN
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[140][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
           RepID=Q2B288_9BACI
          Length = 374

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 361 RHPSRSKRLKDFL 373

[141][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
           sphaericus RepID=O52862_BACSH
          Length = 140

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 68  LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 126

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 127 RHPSRSKRLKDFL 139

[142][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
           RepID=C9AAM5_ENTCA
          Length = 368

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +G+D  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 296 LKEQLEDVLD-TLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 355 RHPSRSKQLKDFL 367

[143][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
           RepID=C8ZYV7_ENTGA
          Length = 368

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +G+D  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 296 LKEQLEDVLD-TLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 355 RHPSRSKQLKDFL 367

[144][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
           RepID=C6QPZ7_9BACI
          Length = 377

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 305 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 364 RHPSRSKRLKDFL 376

[145][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
           RepID=C6JGK6_9FIRM
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
 Frame = -3

Query: 524 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 357
           Q +N+P +  D  A   LKE++ ++++ TL +RE++++RL +GLD  +  T EE+ K   
Sbjct: 287 QDDNVP-VPADAAAFTLLKEQLVEVLS-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFN 344

Query: 356 LSRERVRQVGLVALEKLKHAARKKELEAML 267
           ++RER+RQ+   AL KL+H +R ++L+  L
Sbjct: 345 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 374

[146][TOP]
>UniRef100_C4C6T9 RNA polymerase sigma factor n=1 Tax=Sebaldella termitidis ATCC
           33386 RepID=C4C6T9_9FUSO
          Length = 387

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 366
           +FV D +  N P+       LKE+++ ++  TL ERE  ++R  YGLD     T EE+ K
Sbjct: 296 DFVEDDKFLN-PYDATTRVLLKEQLDGVLK-TLSEREEMVLRYRYGLDDGSPKTLEEVGK 353

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 354 IFNVTRERIRQIEVKALRKLRHPSRRKKLE 383

[147][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
           Tax=Geobacillus RepID=C9RYK5_9BACI
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[148][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[149][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
           RepID=C2YWN0_BACCE
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[150][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
           RepID=C2WC75_BACCE
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[151][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
           RepID=C2U2P5_BACCE
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[152][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
           RepID=B7HCR6_BACC4
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[153][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
           RepID=A9VHS1_BACWK
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[154][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
           RepID=C2PK08_BACCE
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[155][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
           RepID=B7HPJ2_BACC7
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[156][TOP]
>UniRef100_C1TPF1 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
           DSM 11002 RepID=C1TPF1_9BACT
          Length = 381

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           L E++  +++  L +RERE++R  +GL D +  T EE+ +R G++RER+RQ+   AL KL
Sbjct: 309 LHEQIEDMLDA-LSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKL 367

Query: 305 KHAARKKELEAML 267
           +H +R K+L   L
Sbjct: 368 RHPSRSKKLRDFL 380

[157][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
           RepID=C1PEH1_BACCO
          Length = 377

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 305 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 364 RHPSRSKRLKDFL 376

[158][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
           10507 RepID=C0CQD9_9FIRM
          Length = 374

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
 Frame = -3

Query: 524 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 357
           Q +N+P +  D  A   LKE++ ++++ TL +RE++++RL +GLD  +  T EE+ K   
Sbjct: 286 QDDNVP-VPADAAAFTLLKEQLVEVLS-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFN 343

Query: 356 LSRERVRQVGLVALEKLKHAARKKELEAML 267
           ++RER+RQ+   AL KL+H +R ++L+  L
Sbjct: 344 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 373

[159][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
           RepID=B7IYE3_BACC2
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[160][TOP]
>UniRef100_B4CWV6 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428
           RepID=B4CWV6_9BACT
          Length = 671

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = -3

Query: 551 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEE 375
           ++ +F+ DK +EN+  +      LKE++  ++  TL ERER+++   +GL D    T EE
Sbjct: 573 SFGDFIEDKGAENLSDMTAIV-LLKEKIKDVLE-TLTERERQVLEQRFGLVDGYSRTLEE 630

Query: 374 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 258
           + ++  ++RER+RQ+   AL K++H  R ++LE  L  H
Sbjct: 631 VGRQFKVTRERIRQIEAKALRKMRHPTRIRQLEGFLEAH 669

[161][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
          Length = 375

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 362 RHPSRSKRLKDFL 374

[162][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
           27755 RepID=B0G307_9FIRM
          Length = 382

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = -3

Query: 512 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVR 336
           +P     +  LKE+++++++ TL ERE++++RL +G+D  +  T EE+ K   ++RER+R
Sbjct: 300 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIR 358

Query: 335 QVGLVALEKLKHAARKKELEAML 267
           Q+   AL KL+H +R ++L   L
Sbjct: 359 QIEAKALRKLRHPSRSRKLRDYL 381

[163][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
           RepID=A0RIR5_BACAH
          Length = 373

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 360 RHPSRSKRLKDFL 372

[164][TOP]
>UniRef100_A4CL98 Putative sigma factor A n=1 Tax=Robiginitalea biformata HTCC2501
           RepID=A4CL98_9FLAO
          Length = 287

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L  E+N+ +  TL  RE ++V+LYYG+ D++ +T  EI +   L+RERVRQ+   A+ K
Sbjct: 214 SLNTEINRALE-TLSPREADVVKLYYGIGDQQSMTLAEIGQTFDLTRERVRQIREKAIRK 272

Query: 308 LKHAARKKELEAML 267
           L+H +R K L+A L
Sbjct: 273 LRHHSRSKLLKAYL 286

[165][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
           RepID=RPOD_BACSU
          Length = 371

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 299 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 357

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 358 RHPSRSKRLKDFL 370

[166][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
           RepID=RPOD_BACHD
          Length = 372

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 300 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 359 RHPSRSKRLKDFL 371

[167][TOP]
>UniRef100_UPI000197B56E hypothetical protein BACCOPRO_00840 n=1 Tax=Bacteroides coprophilus
           DSM 18228 RepID=UPI000197B56E
          Length = 317

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 27/73 (36%), Positives = 53/73 (72%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +L  E+++ ++ TL ERE++I+++++G++ + +T EEI  + GL+RERVRQ+   A+ +L
Sbjct: 245 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 303

Query: 305 KHAARKKELEAML 267
           +  +R K L++ L
Sbjct: 304 RQNSRSKLLKSYL 316

[168][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
           J2-071 RepID=UPI0000F53BBC
          Length = 374

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 360

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 361 RHPSRSKQLKDFL 373

[169][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
           18311 RepID=Q5M3E3_STRT2
          Length = 369

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+   AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364

[170][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L6R1_STAHJ
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[171][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[172][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
           RepID=Q03JL2_STRTD
          Length = 369

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+   AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364

[173][TOP]
>UniRef100_O67464 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
           RepID=O67464_AQUAE
          Length = 575

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
 Frame = -3

Query: 554 DTY-HNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTW 381
           DT+  +F+ DK   N P   V    L+E++ K+++ TL E+EREI+   YGL D    T 
Sbjct: 479 DTFLKDFIEDKSIPN-PEEQVTRKLLREQLQKVLS-TLSEKEREILMYRYGLVDGTEYTL 536

Query: 380 EEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLF 264
           E++ K   ++RER+RQ+   AL KL+H AR K L+   F
Sbjct: 537 EQVGKMFNVTRERIRQIENKALRKLRHPARAKYLKDFEF 575

[174][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
           RepID=A4J7B9_DESRM
          Length = 367

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 28/73 (38%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           L+E++++++  TL +RE++++RL +GLD  +  T EE+ ++ G++RER+RQ+    L KL
Sbjct: 295 LREQLDEVLK-TLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 353

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 354 RHPSRSKKLKDYL 366

[175][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
           RepID=Q3D699_STRAG
          Length = 369

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+   AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364

[176][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
           RepID=Q3CZ52_STRAG
          Length = 369

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+   AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364

[177][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
           RepID=O08332_STAAU
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[178][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           A9299 RepID=C8M7C3_STAAU
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[179][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus A6300 RepID=C8LTM9_STAAU
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[180][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus 68-397 RepID=C8ACF1_STAAU
          Length = 342

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 251 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 308

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 309 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 338

[181][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[182][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
           RepID=C6VQS5_LACPJ
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL  RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 296 LKEQLEGVLD-TLTNREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 355 RHPSRSKQLKDFL 367

[183][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           W23144 RepID=C5QXG6_STAEP
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[184][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           M23864:W1 RepID=C5QSV2_STAEP
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[185][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
           RepID=C4WCC7_STAWA
          Length = 367

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 276 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 333

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 334 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 363

[186][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=C4EU48_9BACT
          Length = 387

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           L+E++ +++   L +RE+E++RL +GL D    T EE+ +R G++RER+RQ+   AL KL
Sbjct: 315 LREQLEEMLE-DLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKL 373

Query: 305 KHAARKKELEAML 267
           +H +R K L   L
Sbjct: 374 RHPSRSKRLRDFL 386

[187][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
           RepID=C2M0X4_STAHO
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[188][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
           RepID=C2LRD4_STRSL
          Length = 369

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
              ++RER+RQ+   AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364

[189][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
           RepID=C2C209_LISGR
          Length = 389

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 317 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 375

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 376 RHPSRSKQLKDFL 388

[190][TOP]
>UniRef100_C0YS93 RNA polymerase sigma-70 factor n=2 Tax=Chryseobacterium
           RepID=C0YS93_9FLAO
          Length = 288

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/74 (44%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L+ E+ + +N TL  RE ++VRLY+GL+ K  +T EEI +   L+RERVRQ+   A+++
Sbjct: 214 SLQIEIERALN-TLTPREADLVRLYFGLNGKHPMTLEEIGETFDLTRERVRQIKEKAIKR 272

Query: 308 LKHAARKKELEAML 267
           LKH  R K L++ L
Sbjct: 273 LKHNTRSKILKSYL 286

[191][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
           RepID=C0C397_9CLOT
          Length = 370

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = -3

Query: 512 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 336
           +P     +  LKE+++++++ TL ERE++++RL +G+ D +  T EE+ K   ++RER+R
Sbjct: 288 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 346

Query: 335 QVGLVALEKLKHAARKKELEAML 267
           Q+   AL KL+H +R ++L   L
Sbjct: 347 QIEAKALRKLRHPSRSRKLRDYL 369

[192][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
           RepID=C0BBA6_9FIRM
          Length = 371

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = -3

Query: 512 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 336
           +P     +  LKE+++++++ TL ERE++++RL +G+ D +  T EE+ K   ++RER+R
Sbjct: 289 VPAEAAAQTLLKEQLDEVLS-TLTEREQKVLRLRFGMSDGRARTLEEVGKEFDVTRERIR 347

Query: 335 QVGLVALEKLKHAARKKELEAML 267
           Q+   AL KL+H +R ++L   L
Sbjct: 348 QIEAKALRKLRHPSRSRKLRDYL 370

[193][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
           RepID=B9CVA9_STACP
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[194][TOP]
>UniRef100_B5JG90 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium
           DG1235 RepID=B5JG90_9BACT
          Length = 576

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
 Frame = -3

Query: 548 YHNFVADKQSENIPWIGVDEWALKEEVNKLINV--TLVEREREIVRLYYGL-DKKCLTWE 378
           + +F+ DK +EN P+   D+ A      K+I+V  +L ERER ++ L +GL D    T E
Sbjct: 460 FGDFIEDKSAEN-PY---DQTAFSLLREKIIDVLDSLTERERRVLSLRFGLVDGYSRTLE 515

Query: 377 EISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH*YDG 246
           E+ K+  ++RER+RQ+   AL K++H  R ++L        +DG
Sbjct: 516 EVGKQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFENEQFDG 559

[195][TOP]
>UniRef100_B3JJS2 Putative uncharacterized protein n=2 Tax=Bacteroides
           RepID=B3JJS2_9BACE
          Length = 286

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 27/73 (36%), Positives = 53/73 (72%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +L  E+++ ++ TL ERE++I+++++G++ + +T EEI  + GL+RERVRQ+   A+ +L
Sbjct: 214 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272

Query: 305 KHAARKKELEAML 267
           +  +R K L++ L
Sbjct: 273 RQNSRSKLLKSYL 285

[196][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
           RepID=B0NBC7_EUBSP
          Length = 371

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = -3

Query: 512 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 336
           +P     +  LKE+++++++ TL ERE++++RL +G+ D +  T EE+ K   ++RER+R
Sbjct: 289 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 347

Query: 335 QVGLVALEKLKHAARKKELEAML 267
           Q+   AL KL+H +R ++L   L
Sbjct: 348 QIEAKALRKLRHPSRSRKLRDYL 370

[197][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
           RepID=A7AZ88_RUMGN
          Length = 371

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = -3

Query: 512 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 336
           +P     +  LKE+++++++ TL ERE++++RL +G+ D +  T EE+ K   ++RER+R
Sbjct: 289 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 347

Query: 335 QVGLVALEKLKHAARKKELEAML 267
           Q+   AL KL+H +R ++L   L
Sbjct: 348 QIEAKALRKLRHPSRSRKLRDYL 370

[198][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
           RepID=A6BEL2_9FIRM
          Length = 369

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = -3

Query: 512 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 336
           +P     +  LKE+++++++ TL ERE++++RL +G+ D +  T EE+ K   ++RER+R
Sbjct: 287 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 345

Query: 335 QVGLVALEKLKHAARKKELEAML 267
           Q+   AL KL+H +R ++L   L
Sbjct: 346 QIEAKALRKLRHPSRSRKLRDYL 368

[199][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
           RepID=A5KQA4_9FIRM
          Length = 383

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
 Frame = -3

Query: 512 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 336
           +P     +  LKE+++++++ TL ERE++++RL +G+ D +  T EE+ K   ++RER+R
Sbjct: 301 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 359

Query: 335 QVGLVALEKLKHAARKKELEAML 267
           Q+   AL KL+H +R ++L   L
Sbjct: 360 QIEAKALRKLRHPSRSRKLRDYL 382

[200][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
           RepID=RPOD_STAEQ
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[201][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus N315 RepID=RPOD_STAAN
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[202][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
           RepID=RPOD_STAA8
          Length = 368

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+++++ P        LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364

[203][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
           RepID=RPOD_LISMO
          Length = 374

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 360

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 361 RHPSRSKQLKDFL 373

[204][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
          Length = 374

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 360

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 361 RHPSRSKQLKDFL 373

[205][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
           M18 RepID=Q8P1I9_STRP8
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[206][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
           M3 RepID=Q8K811_STRP3
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[207][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           Y51 RepID=Q24T06_DESHY
          Length = 367

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ +++  TL  RE +++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 295 LKEQLEEVLE-TLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 353

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 354 RHPSRSKKLKDYL 366

[208][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
           subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[209][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
           zooepidemicus H70 RepID=C0MGY0_STRS7
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[210][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
           4047 RepID=C0M883_STRE4
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[211][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
           JCSC5402 RepID=B9E6V2_MACCJ
          Length = 366

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 294 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 352

Query: 305 KHAARKKELE 276
           +H +R K L+
Sbjct: 353 RHPSRSKRLK 362

[212][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
           RepID=B9DRV6_STRU0
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[213][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
           carnosus TM300 RepID=B9DNN2_STACT
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 297 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355

Query: 305 KHAARKKELE 276
           +H +R K L+
Sbjct: 356 RHPSRSKRLK 365

[214][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           DCB-2 RepID=B8FTY1_DESHD
          Length = 372

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ +++  TL  RE +++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 300 LKEQLEEVLE-TLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 358

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 359 RHPSRSKKLKDYL 371

[215][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
           zooepidemicus MGCS10565 RepID=B4U2H7_STREM
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[216][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
           BAA-835 RepID=B2UM02_AKKM8
          Length = 688

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
 Frame = -3

Query: 551 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEE 375
           ++ +F+ DK +EN P        LKE++  +++ TL +RERE++   +GL D    T EE
Sbjct: 590 SFGDFIEDKAAEN-PMEEASFSFLKEKIKDVLD-TLTDREREVIEQRFGLRDGSPRTLEE 647

Query: 374 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           + ++  ++RER+RQ+   AL KL+H  R  +++  L
Sbjct: 648 VGRQFSVTRERIRQIEAKALRKLRHPTRISKIKGFL 683

[217][TOP]
>UniRef100_A6H187 RNA polymerase sigma-70 factor RpoD n=1 Tax=Flavobacterium
           psychrophilum JIP02/86 RepID=A6H187_FLAPJ
          Length = 287

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L+ E+ + +  TL  RE ++VRLY+GL D+  +T EEI +   L+RERVRQ+   A+ +
Sbjct: 214 SLRTEIERSLE-TLTPREADVVRLYFGLADQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272

Query: 308 LKHAARKKELEAML 267
           LKH +R K L+  L
Sbjct: 273 LKHTSRSKILKTYL 286

[218][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
           RepID=A2RFA3_STRPG
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[219][TOP]
>UniRef100_A0LYB9 RNA polymerase sigma-70 factor n=1 Tax=Gramella forsetii KT0803
           RepID=A0LYB9_GRAFK
          Length = 287

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L+ E+ + +  TL  RE +++RLY+GL D+  +T EEI +   L+RERVRQ+   A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272

Query: 308 LKHAARKKELEAML 267
           LKH +R K L+  L
Sbjct: 273 LKHTSRSKILKTYL 286

[220][TOP]
>UniRef100_A5FK06 RNA polymerase, sigma 70 subunit, RpoD family n=2
           Tax=Flavobacterium johnsoniae RepID=A5FK06_FLAJ1
          Length = 287

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L+ E+ + +  TL  RE ++VRLY+GL D+  +T EEI +   L+RERVRQ+   A+ +
Sbjct: 214 SLRTEIERSLE-TLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272

Query: 308 LKHAARKKELEAML 267
           LKH +R K L+  L
Sbjct: 273 LKHTSRSKILKTYL 286

[221][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R939_9THEO
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 31/93 (33%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D++++  P        L+E++N+++  +L  RE++++RL +GLD  +  T EE+ +
Sbjct: 278 DFIEDQEAQ-APAEEASYALLREQLNEVLQ-SLTPREQKVLRLRFGLDDGRARTLEEVGQ 335

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           + G++RER+RQ+    L KL+H +R K+L+  L
Sbjct: 336 KFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 368

[222][TOP]
>UniRef100_C6I5X7 RpoD n=3 Tax=Bacteroides RepID=C6I5X7_9BACE
          Length = 286

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 27/73 (36%), Positives = 53/73 (72%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +L  E+++ ++ TL +RE+EI+++++G+ ++ +T EEI  + GL+RERVRQ+   A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272

Query: 305 KHAARKKELEAML 267
           + + R K L++ L
Sbjct: 273 RQSNRSKLLKSYL 285

[223][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
           16047 RepID=C2EK73_9LACO
          Length = 370

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ +++  TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 279 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 336

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELE 276
             G++RER+RQ+   AL KL+H +R  +L+
Sbjct: 337 VFGVTRERIRQIEAKALRKLRHPSRSNQLK 366

[224][TOP]
>UniRef100_C0UV59 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
           BAA-798 RepID=C0UV59_9BACT
          Length = 338

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = -3

Query: 566 GLPGDT-YHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC 390
           G  GD+    F+ D  +E    + + E  LK E++K++N +L E+ER+++ L YGL+   
Sbjct: 238 GTDGDSSLGQFIPDSTTETPVDLAIGE-VLKRELSKVLN-SLTEKERKVMVLRYGLEGSS 295

Query: 389 L-TWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             T EE+  R+G++RERVRQ+   ALEKL+   +   L   L
Sbjct: 296 PHTLEEVGHRLGVTRERVRQIEAKALEKLRKPGKLNHLRDFL 337

[225][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
           16841 RepID=C0FXF0_9FIRM
          Length = 426

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
 Frame = -3

Query: 524 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIG 357
           Q +N+P +  D  A   LKE++ +++  TL ERE++++ L +GL D +  T EE+ K   
Sbjct: 338 QDDNVP-VPADAAAFTLLKEQLEEVLG-TLTEREQKVLTLRFGLEDGRARTLEEVGKEFN 395

Query: 356 LSRERVRQVGLVALEKLKHAARKKELEAML 267
           ++RER+RQ+   AL KL+H +R ++L+  L
Sbjct: 396 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 425

[226][TOP]
>UniRef100_A6L3X4 RNA polymerase sigma factor rpoD n=5 Tax=Bacteroides
           RepID=A6L3X4_BACV8
          Length = 286

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 27/73 (36%), Positives = 53/73 (72%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +L  E+++ ++ TL ERE++I+++++G++ + +T EEI  + GL+RERVRQ+   A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272

Query: 305 KHAARKKELEAML 267
           +  +R K L++ L
Sbjct: 273 RQNSRSKLLKSYL 285

[227][TOP]
>UniRef100_B3CB36 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis
           DSM 17393 RepID=B3CB36_9BACE
          Length = 286

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 27/73 (36%), Positives = 53/73 (72%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +L  E+++ ++ TL +RE+EI+++++G+ ++ +T EEI  + GL+RERVRQ+   A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272

Query: 305 KHAARKKELEAML 267
           + + R K L++ L
Sbjct: 273 RQSNRSKLLKSYL 285

[228][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
           subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
          Length = 369

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ D+  EN P        L+E+++++++ TL +RE  ++RL +GLD  K  T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
              ++RER+RQ+   AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363

[229][TOP]
>UniRef100_A8VUB1 RNA polymerase sigma factor n=1 Tax=Bacillus selenitireducens MLS10
           RepID=A8VUB1_9BACI
          Length = 73

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +KE++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 1   MKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 59

Query: 305 KHAARKKELEAML 267
           +H +R K L+  L
Sbjct: 60  RHPSRSKRLKDFL 72

[230][TOP]
>UniRef100_C3R1S4 RNA polymerase sigma factor rpoD n=9 Tax=Bacteroides
           RepID=C3R1S4_9BACE
          Length = 286

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 27/73 (36%), Positives = 53/73 (72%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +L  E+++ ++ TL +RE+EI+++++G+ ++ +T EEI  + GL+RERVRQ+   A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272

Query: 305 KHAARKKELEAML 267
           + + R K L++ L
Sbjct: 273 RQSNRSKLLKSYL 285

[231][TOP]
>UniRef100_A3J4K9 RNA polymerase sigma-70 factor n=1 Tax=Flavobacteria bacterium
           BAL38 RepID=A3J4K9_9FLAO
          Length = 287

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = -3

Query: 485 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 309
           +L+ E+ + +  TL  RE ++VRLY+GL D+  +T EEI +   L+RERVRQ+   A+ +
Sbjct: 214 SLQTEIERALE-TLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272

Query: 308 LKHAARKKELEAML 267
           LKH +R K L+  L
Sbjct: 273 LKHTSRSKILKTYL 286

[232][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
           Nor1 RepID=A1HPB3_9FIRM
          Length = 368

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ +++  TL  RE +++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 296 LKEQLEEVLE-TLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKL 354

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 355 RHPSRSKKLKDFL 367

[233][TOP]
>UniRef100_UPI0001BB60BF RNA polymerase sigma-70 factor n=1 Tax=Blattabacterium sp.
           (Blattella germanica) str. Bge RepID=UPI0001BB60BF
          Length = 287

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 29/78 (37%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = -3

Query: 497 VDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIGLSRERVRQVGLV 321
           +++ +L++++ +++  TL ERER ++ L++GL+    +T EE+ +   L+RERVRQ+  +
Sbjct: 210 LEKESLRKDIKRILE-TLSERERRVIILHFGLNGSPPMTLEEVGQSCDLTRERVRQIESI 268

Query: 320 ALEKLKHAARKKELEAML 267
           AL++LKH++R K L+  L
Sbjct: 269 ALKRLKHSSRSKILKPYL 286

[234][TOP]
>UniRef100_UPI00016C45A8 transcription initiation factor sigma 70 n=1 Tax=Gemmata
           obscuriglobus UQM 2246 RepID=UPI00016C45A8
          Length = 556

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = -3

Query: 554 DTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWE 378
           D+Y     +  S   P        LK+++  ++  TL  REREI++L YGL D    T E
Sbjct: 453 DSYFGDFIEDNSVESPVNAATNEMLKDKIEGVLK-TLTYREREIIKLRYGLGDGYTYTLE 511

Query: 377 EISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
           E+ +   ++RERVRQ+   A+ KL+H  R ++LE  L
Sbjct: 512 EVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFL 548

[235][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
           audaxviator MP104C RepID=B1I1U1_DESAP
          Length = 360

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           L+E+++ ++  TL ERE+ ++RL +GLD  +  T EE+ +  G++RER+RQ+    L KL
Sbjct: 288 LREQLDDVLK-TLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKL 346

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 347 RHPSRSKKLKDYL 359

[236][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
           Ice1 RepID=B0TG57_HELMI
          Length = 371

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ +++  TL  RE +++RL +GLD  +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 299 LKEQLEEVLE-TLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKL 357

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 358 RHPSRSKKLKDYL 370

[237][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
           4571 RepID=A8YVM2_LACH4
          Length = 356

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ +++  TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 265 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 322

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
             G++RER+RQ+   AL KL+H +R  +L
Sbjct: 323 VFGVTRERIRQIEAKALRKLRHPSRSNQL 351

[238][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
           RepID=A8MG96_ALKOO
          Length = 372

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ ++++ TL  RE++++RL +GLD  +  T EE+ K+  ++RER+RQ+   AL KL
Sbjct: 300 LKEQLVEVLD-TLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 359 RHPSRSKKLKDYL 371

[239][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
           QYMF RepID=A6TSG9_ALKMQ
          Length = 372

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++ ++++ TL  RE++++RL +GLD  +  T EE+ K+  ++RER+RQ+   AL KL
Sbjct: 300 LKEQLIEVLD-TLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 359 RHPSRSKKLKDYL 371

[240][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
           DSM 20075 RepID=C9LZ42_LACHE
          Length = 370

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ +++  TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 279 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 336

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
             G++RER+RQ+   AL KL+H +R  +L
Sbjct: 337 VFGVTRERIRQIEAKALRKLRHPSRSNQL 365

[241][TOP]
>UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W3K2_9FIRM
          Length = 359

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 28/73 (38%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           L+E+++ ++  TL +RE++++RL +GLD  +  T EE+ ++ G++RER+RQ+    L KL
Sbjct: 287 LREQLDDVLK-TLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 345

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 346 RHPSRSKKLKDYL 358

[242][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
           13335 RepID=C8PAI1_9LACO
          Length = 382

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 366
           +F+ DK + + P        LKE++ ++++ TL +RE  ++RL +GL D +  T EE+ +
Sbjct: 291 DFIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRFGLNDGRTRTLEEVGR 348

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             G++RER+RQ+   AL KL+H +R  +L+  L
Sbjct: 349 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 381

[243][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
           RepID=C8P839_9LACO
          Length = 380

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +K+++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 308 MKKQLENVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 367 RHPSRSKQLKDFL 379

[244][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
           101-4-CHN RepID=C7XU09_9LACO
          Length = 381

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +K+++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 309 MKKQLENVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 367

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 368 RHPSRSKQLKDFL 380

[245][TOP]
>UniRef100_C5NX65 RNA polymerase sigma factor n=1 Tax=Gemella haemolysans ATCC 10379
           RepID=C5NX65_9BACL
          Length = 361

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 31/93 (33%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 366
           +F+ DK++++      +E  LKE++ +++  TL +RE  +++L +GL D K  T EE+  
Sbjct: 270 DFIEDKEAQSPVEHAANE-LLKEQLEEILE-TLTDREENVLKLRFGLKDGKTHTLEEVGS 327

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 267
             G++RER+RQ+   A+ KLKH ++  +L+  +
Sbjct: 328 AFGVTRERIRQIEAKAIRKLKHPSKLNKLKGFM 360

[246][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
           RepID=C4V565_9FIRM
          Length = 382

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           LKE++++++  TL  RE E++RL +GL D +  T EE+ +  G++RER+RQ+   AL KL
Sbjct: 309 LKEQISEVLT-TLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKALRKL 367

Query: 305 KHAARKKELE 276
           +H  R ++L+
Sbjct: 368 RHPVRLRKLQ 377

[247][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
           RepID=C2KFH9_9LACO
          Length = 370

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ +++  TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 279 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 336

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
             G++RER+RQ+   AL KL+H +R  +L
Sbjct: 337 VFGVTRERIRQIEAKALRKLRHPSRSNQL 365

[248][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
           RepID=C2HPX4_LACAC
          Length = 370

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = -3

Query: 542 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 366
           +F+ DK + + P        LKE++ +++  TL +RE  ++RL +GLD  +  T EE+ K
Sbjct: 279 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 336

Query: 365 RIGLSRERVRQVGLVALEKLKHAARKKEL 279
             G++RER+RQ+   AL KL+H +R  +L
Sbjct: 337 VFGVTRERIRQIEAKALRKLRHPSRSNQL 365

[249][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
           RepID=C2EX53_LACRE
          Length = 380

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +K+++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 308 MKKQLENVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 367 RHPSRSKQLKDFL 379

[250][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
           49540 RepID=C2ESB4_9LACO
          Length = 380

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
 Frame = -3

Query: 482 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 306
           +K+++  +++ TL +RE  ++RL +GLD  +  T EE+ K  G++RER+RQ+   AL KL
Sbjct: 308 MKKQLENVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366

Query: 305 KHAARKKELEAML 267
           +H +R K+L+  L
Sbjct: 367 RHPSRSKQLKDFL 379