BB922985 ( RCE30475 )

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[1][TOP]
>UniRef100_P03593 RNA-directed RNA polymerase 2A n=1 Tax=Alfalfa mosaic virus (strain
            425 / isolate Leiden) RepID=ORF2A_AMVLE
          Length = 790

 Score =  381 bits (979), Expect = e-104
 Identities = 185/192 (96%), Positives = 187/192 (97%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDALTYLGNTIVTLACLCHVY+LMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT
Sbjct: 585  FQRRTGDALTYLGNTIVTLACLCHVYDLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 644

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFNLEAKFPHNQPFICSKFLITMPT SG KVVLP+PNPLKLLIRLGSKKVNADIFDEWY
Sbjct: 645  TLFNLEAKFPHNQPFICSKFLITMPTTSGGKVVLPIPNPLKLLIRLGSKKVNADIFDEWY 704

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
            QSWID IG FNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFA KTLCKECLFNEK
Sbjct: 705  QSWIDIIGGFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFAGKTLCKECLFNEK 764

Query: 37   HESNVKIKPRRV 2
            HESNVKIKPRRV
Sbjct: 765  HESNVKIKPRRV 776

[2][TOP]
>UniRef100_Q91NQ3 Polymerase P2 n=1 Tax=Prune dwarf virus RepID=Q91NQ3_9BROM
          Length = 788

 Score =  234 bits (597), Expect = 4e-60
 Identities = 113/190 (59%), Positives = 141/190 (74%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRR GDA TYLGNTIVTLA LC+VY+L   NV  VVASGDDSLIG+  EL R  E LF+
Sbjct: 564  YQRRAGDACTYLGNTIVTLAALCYVYDLRSSNVAMVVASGDDSLIGSYSELDRSFEHLFS 623

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFN EAKFPHNQPFICSKFL+TMPT  G K V+ VPNP KLLI+LG K +  D FD+W+
Sbjct: 624  TLFNFEAKFPHNQPFICSKFLLTMPTKGGGKQVVAVPNPAKLLIKLGVKSMTVDKFDDWF 683

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
            QSW+D I  F+D+++I  V +MT++RY+RRPS +L +A+ SL  +FA+K  CK+ LF   
Sbjct: 684  QSWLDLIHYFDDYYLIEVVCSMTSYRYIRRPSQFLVSAISSLKSLFANKKKCKDFLFPGL 743

Query: 37   HESNVKIKPR 8
             + N  +  R
Sbjct: 744  RDKNPDLSMR 753

[3][TOP]
>UniRef100_Q5VI74 RNA-dependent RNA polymerase n=1 Tax=Fragaria chiloensis latent virus
            RepID=Q5VI74_9BROM
          Length = 786

 Score =  229 bits (584), Expect = 1e-58
 Identities = 112/177 (63%), Positives = 136/177 (76%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA+TYLGNT+VTLA L +VY+L DPNV  VVASGDDSLIG+   L R +E L +
Sbjct: 593  FQRRTGDAVTYLGNTVVTLAVLSYVYDLSDPNVLMVVASGDDSLIGSYRPLDRSREHLCS 652

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFN EAKFPHNQPFICSKFL+TMPT SG + V+ VPNPLKLLI+LG + +  D FD WY
Sbjct: 653  TLFNFEAKFPHNQPFICSKFLLTMPTKSGGRRVVAVPNPLKLLIKLGIRNLQEDQFDAWY 712

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLF 47
             SWID I  FND H+I  VA M ++RYLR+PS++L+ A+ S   +FA+KT   + LF
Sbjct: 713  TSWIDLIHYFNDEHLISVVAEMCSYRYLRKPSMFLKPAMCSFNNVFANKTKLMKFLF 769

[4][TOP]
>UniRef100_Q91NQ0 Polymerase p2 n=1 Tax=Prunus necrotic ringspot virus
            RepID=Q91NQ0_9BROM
          Length = 799

 Score =  213 bits (541), Expect = 1e-53
 Identities = 101/177 (57%), Positives = 131/177 (74%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRRTGDA TYLGNTI+TL+ L ++Y+L+DPNV FV+ASGDDSLIG+++ L R +EF F 
Sbjct: 578  YQRRTGDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKPLDRSEEFKFV 637

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFN EAKFPHNQPF+CSKFL  +PT+SG K VL VPN LKL I+LG K +   +FD WY
Sbjct: 638  TLFNFEAKFPHNQPFVCSKFLCLLPTVSGGKKVLAVPNALKLNIKLGVKDLAPCVFDAWY 697

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLF 47
             SW+D I  F+++ V+  +    +HRYLRR + Y E A+ +   IF+SK  C + LF
Sbjct: 698  NSWLDLIWYFDNYLVVSTMKDYISHRYLRRQTCYQEGAMLAYRTIFSSKEKCLKSLF 754

[5][TOP]
>UniRef100_Q9QGG9 Putative polymerase n=1 Tax=Apple mosaic virus RepID=Q9QGG9_9BROM
          Length = 875

 Score =  207 bits (527), Expect = 5e-52
 Identities = 97/182 (53%), Positives = 130/182 (71%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +Q RTGDA TYL NTI+TL+ L ++Y+L+DPN+ FV+ASGDDSLIG+   L RD EF FT
Sbjct: 630  YQPRTGDACTYLANTIITLSALAYMYDLLDPNITFVIASGDDSLIGSRVPLDRDDEFKFT 689

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFN EAKFPHNQPF+CSKFL  +PT  G K V+ VPN LKL I+LG K ++   FD WY
Sbjct: 690  TLFNFEAKFPHNQPFVCSKFLCLVPTTDGGKKVVAVPNALKLNIKLGVKDLSPLTFDSWY 749

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
            +SW+D I  F+++ ++  +    +HRYLR+P+++ E A+ + G IFA+K  C   +F   
Sbjct: 750  ESWLDLIWYFDNYLIVSTMKDYLSHRYLRKPTMFQEGAMLAYGSIFANKEKCLRSVFGIS 809

Query: 37   HE 32
             E
Sbjct: 810  SE 811

[6][TOP]
>UniRef100_O41891 Putative polymerase (Fragment) n=1 Tax=Citrus variegation virus
           RepID=O41891_9BROM
          Length = 338

 Score =  207 bits (527), Expect = 5e-52
 Identities = 105/187 (56%), Positives = 129/187 (68%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TYLGNT+VTL CL  VY+L DPN+ FV+ASGDDSLIG+V ELPR  E LFT
Sbjct: 80  FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFVIASGDDSLIGSVNELPRGSEDLFT 139

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
           TLFN EAKFPHNQPFICSKFL+++    G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199

Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
            SW+D I  F D  V   VA++ A+R  RR S+YL +AL SL   FA+K   K   ++  
Sbjct: 200 TSWLDVIYYFRDSRVCEKVASLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYHLT 259

Query: 37  HESNVKI 17
            +  +KI
Sbjct: 260 EQECLKI 266

[7][TOP]
>UniRef100_A5JVP5 Putative viral polymerase n=1 Tax=Citrus variegation virus
            RepID=A5JVP5_9BROM
          Length = 790

 Score =  207 bits (527), Expect = 5e-52
 Identities = 105/187 (56%), Positives = 129/187 (68%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TYLGNT+VTL CL  VY+L DPN+ FV+ASGDDSLIG+V ELPR  E LFT
Sbjct: 491  FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFVIASGDDSLIGSVNELPRGSEDLFT 550

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFN EAKFPHNQPFICSKFL+++    G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 551  TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 610

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
             SW+D I  F D  V   VA++ A+R  RR S+YL +AL SL   FA+K   K   ++  
Sbjct: 611  TSWLDVIYYFRDSRVCEKVASLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYHLT 670

Query: 37   HESNVKI 17
             +  +KI
Sbjct: 671  EQECLKI 677

[8][TOP]
>UniRef100_Q9IMN3 Polymerase 2a (Fragment) n=1 Tax=Hydrangea mosaic virus
           RepID=Q9IMN3_9BROM
          Length = 338

 Score =  206 bits (524), Expect = 1e-51
 Identities = 104/187 (55%), Positives = 129/187 (68%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TYLGNT+VTL CL  VY+L DPN+ F++ASGDDSLIG+V ELPR  E LFT
Sbjct: 80  FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 139

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
           TLFN EAKFPHNQPFICSKFL+++    G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199

Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
           QSW+D I  F D  V   VA + A+R  RR S+YL +AL SL   FA+    K   ++  
Sbjct: 200 QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 259

Query: 37  HESNVKI 17
            + ++KI
Sbjct: 260 EQESLKI 266

[9][TOP]
>UniRef100_Q88167 Polymerase n=1 Tax=Elm mottle virus RepID=Q88167_9BROM
          Length = 789

 Score =  206 bits (524), Expect = 1e-51
 Identities = 104/187 (55%), Positives = 129/187 (68%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TYLGNT+VTL CL  VY+L DPN+ F++ASGDDSLIG+V ELPR  E LFT
Sbjct: 490  FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 549

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFN EAKFPHNQPFICSKFL+++    G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 550  TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 609

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
            QSW+D I  F D  V   VA + A+R  RR S+YL +AL SL   FA+    K   ++  
Sbjct: 610  QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 669

Query: 37   HESNVKI 17
             + ++KI
Sbjct: 670  EQESLKI 676

[10][TOP]
>UniRef100_O11878 Polymerase (Fragment) n=1 Tax=Elm mottle virus RepID=O11878_9BROM
          Length = 338

 Score =  206 bits (524), Expect = 1e-51
 Identities = 104/187 (55%), Positives = 129/187 (68%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TYLGNT+VTL CL  VY+L DPN+ F++ASGDDSLIG+V ELPR  E LFT
Sbjct: 80  FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 139

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
           TLFN EAKFPHNQPFICSKFL+++    G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199

Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
           QSW+D I  F D  V   VA + A+R  RR S+YL +AL SL   FA+    K   ++  
Sbjct: 200 QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 259

Query: 37  HESNVKI 17
            + ++KI
Sbjct: 260 EQESLKI 266

[11][TOP]
>UniRef100_O41889 Putative polymerase (Fragment) n=1 Tax=Asparagus virus 2
           RepID=O41889_9BROM
          Length = 338

 Score =  204 bits (518), Expect = 5e-51
 Identities = 104/187 (55%), Positives = 129/187 (68%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TYLGNT+VTL CL  VY+L +PN+ FV+ASGDDSLIG+V+ELPR  E LFT
Sbjct: 80  FQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVDELPRGPEDLFT 139

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
           TLFN EAKFPHNQPFICSKFL+++    G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 199

Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
            SW+D I  F D  V   VA++ A R  RR S+YL +AL SL   FA+K   K   ++  
Sbjct: 200 TSWLDVIYYFRDSRVCEKVASLCAFRQTRRSSMYLLSALLSLPSRFANKKKFKWLCYHLT 259

Query: 37  HESNVKI 17
            +  +KI
Sbjct: 260 EQECLKI 266

[12][TOP]
>UniRef100_B8RCA4 Polymerase n=1 Tax=Asparagus virus 2 RepID=B8RCA4_9BROM
          Length = 790

 Score =  204 bits (518), Expect = 5e-51
 Identities = 104/187 (55%), Positives = 129/187 (68%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TYLGNT+VTL CL  VY+L +PN+ FV+ASGDDSLIG+V+ELPR  E LFT
Sbjct: 491  FQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVDELPRGPEDLFT 550

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFN EAKFPHNQPFICSKFL+++    G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 551  TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 610

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
             SW+D I  F D  V   VA++ A R  RR S+YL +AL SL   FA+K   K   ++  
Sbjct: 611  TSWLDVIYYFRDSRVCEKVASLCAFRQTRRSSMYLLSALLSLPSRFANKKKFKWLCYHLT 670

Query: 37   HESNVKI 17
             +  +KI
Sbjct: 671  EQECLKI 677

[13][TOP]
>UniRef100_Q66107 Polymerase n=1 Tax=Citrus leaf rugose virus RepID=Q66107_9BROM
          Length = 832

 Score =  202 bits (514), Expect = 2e-50
 Identities = 106/193 (54%), Positives = 129/193 (66%), Gaps = 1/193 (0%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TYLGNT+VTL CL  VY+L DP + FV+ASGDDSLIG+VEELPR  E LFT
Sbjct: 495  FQRRTGDANTYLGNTLVTLICLARVYDLCDPKITFVIASGDDSLIGSVEELPRAPEHLFT 554

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFN EAKFPHNQPFICSK L+++  + G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 555  SLFNFEAKFPHNQPFICSKILVSVDLVCGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 614

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCK-ECLFNE 41
             SW+D I  F D  V   VA + A+R  RR S+YL +AL SL   FA+K   K  C    
Sbjct: 615  TSWLDVIYYFRDSRVCEKVADLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKLLCYHLT 674

Query: 40   KHESNVKIKPRRV 2
            + E   K KP  +
Sbjct: 675  EEECLRKAKPSSI 687

[14][TOP]
>UniRef100_Q99HR0 Putative polymerase p2 n=1 Tax=Tulare apple mosaic virus
            RepID=Q99HR0_9BROM
          Length = 809

 Score =  199 bits (506), Expect = 1e-49
 Identities = 101/186 (54%), Positives = 124/186 (66%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TYLGNT+VTL CL  VY+  DP + FV+ASG DSL+G+VEELPR  E LFT
Sbjct: 490  FQRRTGDANTYLGNTLVTLMCLARVYDSCDPKITFVIASGADSLLGSVEELPRTPEHLFT 549

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFN EAKFPHNQPFICSKFL+++    G + V+ VPNP KLLIR+G +       D+ Y
Sbjct: 550  SLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 609

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
             SW+D I  F D  V   VA + A+R  RR S+YL +AL SL   FA+    K   +N  
Sbjct: 610  NSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANLKKFKRLCYNLT 669

Query: 37   HESNVK 20
             E  +K
Sbjct: 670  EEECLK 675

[15][TOP]
>UniRef100_B7T2J4 Polymerase n=1 Tax=Lilac ring mottle virus RepID=B7T2J4_9BROM
          Length = 791

 Score =  195 bits (495), Expect = 2e-48
 Identities = 99/192 (51%), Positives = 128/192 (66%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRRTGDA+TYLGNTIVTL CL  VY+L   ++ FVVASGDDSLIG++ ELPRD E LF 
Sbjct: 477  YQRRTGDAVTYLGNTIVTLICLARVYDLNSSDITFVVASGDDSLIGSLHELPRDSESLFV 536

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFN EAKFPHNQPFICSKFL+ +    G + V+ VPNP KLLIR+G K        E +
Sbjct: 537  SLFNFEAKFPHNQPFICSKFLVAVDVEGGRREVISVPNPAKLLIRMGKKDCQYQDLGELF 596

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
             SW+D +  F D  V R VA + A+R  R PS+YLEAAL +L   F+++       ++  
Sbjct: 597  ISWLDVVKYFRDSEVCRKVADLCAYRQKRGPSMYLEAALLALPVCFSNRKKFLNICYSLT 656

Query: 37   HESNVKIKPRRV 2
            ++  +K    R+
Sbjct: 657  NDDCLKYSDLRI 668

[16][TOP]
>UniRef100_B9VV82 p2 protein (Fragment) n=1 Tax=Bacopa chlorosis virus
           RepID=B9VV82_9BROM
          Length = 457

 Score =  189 bits (479), Expect = 2e-46
 Identities = 104/204 (50%), Positives = 131/204 (64%), Gaps = 12/204 (5%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TYLGNT+VTL+ L +VY+L DPNV FV ASGDDSLIGT+E LPRD+E L  
Sbjct: 177 FQRRTGDACTYLGNTLVTLSVLSYVYDLSDPNVLFVAASGDDSLIGTLEPLPRDKEDLCV 236

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
           +LFNLE KFPHNQPF+CSKFL+ +    GS+ VL VPNPLKLL +LG K +   + D+ Y
Sbjct: 237 SLFNLETKFPHNQPFLCSKFLLVVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDVY 296

Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK--------- 71
           QS  D + VF D  + R VA +   R    R+  L+LE+AL SL  + A++         
Sbjct: 297 QSLCDIVWVFEDADICRRVAELAEFRQFKGRKQCLFLESALLSLPSLVANRLKFIRRTIN 356

Query: 70  -TLCKECLFNEKHESNVKIKPRRV 2
               K C+ NE +   +     RV
Sbjct: 357 LESSKACIRNEVYSDLIACNVSRV 380

[17][TOP]
>UniRef100_Q5XPM6 RdRp n=1 Tax=Strawberry necrotic shock virus RepID=Q5XPM6_9BROM
          Length = 803

 Score =  184 bits (466), Expect = 6e-45
 Identities = 100/197 (50%), Positives = 128/197 (64%), Gaps = 12/197 (6%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRRTGDA TYLGNT+VTL+ L +VY+L  PN+ FV ASGDDSLIG+ + LPRD+E L  
Sbjct: 518  YQRRTGDACTYLGNTLVTLSVLSYVYDLSSPNILFVAASGDDSLIGSTQPLPRDKEDLCV 577

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFN E KFPHNQPFICSKFL+ +    GSK VL VPNPLKLL +LG K +   + D++Y
Sbjct: 578  SLFNFETKFPHNQPFICSKFLLVVECDDGSKEVLAVPNPLKLLQKLGPKTLQVTMIDDYY 637

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK--------- 71
            QS  D + VF D  + R VA +   R    RR  L+LE+AL SL  + A++         
Sbjct: 638  QSLCDILWVFEDADICRRVAELAEFRCFKGRRHCLFLESALLSLPSLVANRLKFLRRTIN 697

Query: 70   -TLCKECLFNEKHESNV 23
                K C+ N+ H + V
Sbjct: 698  LESSKACIRNDVHSNLV 714

[18][TOP]
>UniRef100_P89678 Putative viral polymerase n=1 Tax=Tobacco streak virus
            RepID=P89678_9BROM
          Length = 800

 Score =  184 bits (466), Expect = 6e-45
 Identities = 93/171 (54%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG++E LPR++E L  
Sbjct: 520  YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSIEPLPREKEDLCV 579

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFN E KFPHNQPFICSKFL+ +    GS+ VL VPNPLKLL +LG K +   + D++Y
Sbjct: 580  SLFNFETKFPHNQPFICSKFLLVVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDYY 639

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLR--RPSLYLEAALESLGKIFASK 71
            QS  D + VFND  V R  A +  +R  +  +  L+LE+AL SL  + A++
Sbjct: 640  QSLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANR 690

[19][TOP]
>UniRef100_B7TX63 2a protein n=1 Tax=Tobacco streak virus RepID=B7TX63_9BROM
          Length = 795

 Score =  183 bits (465), Expect = 7e-45
 Identities = 93/171 (54%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG++E LPR++E L  
Sbjct: 515  YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSIEPLPREKEDLCV 574

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFN E KFPHNQPFICSKFL+ +    GS+ VL VPNPLKLL +LG K +   + D++Y
Sbjct: 575  SLFNFETKFPHNQPFICSKFLLIVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDYY 634

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLR--RPSLYLEAALESLGKIFASK 71
            QS  D + VFND  V R  A +  +R  +  +  L+LE+AL SL  + A++
Sbjct: 635  QSLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANR 685

[20][TOP]
>UniRef100_Q6JE41 P2 protein n=1 Tax=Humulus japonicus latent virus RepID=Q6JE41_9BROM
          Length = 853

 Score =  182 bits (463), Expect = 1e-44
 Identities = 98/184 (53%), Positives = 126/184 (68%), Gaps = 1/184 (0%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TYLGNT+VTL  LCHVY+L D NV  VVASGDD LIG+ E+L + +E+L +
Sbjct: 644  FQRRTGDACTYLGNTLVTLCVLCHVYDLGDANVLSVVASGDDCLIGSYEKLDQSREYLCS 703

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            TLFN EAKFP+NQPFICSKFLI    + G + V+ VPNP+KLLI+LGS K+N + FDEW+
Sbjct: 704  TLFNFEAKFPYNQPFICSKFLIIAEMMDGREEVIAVPNPIKLLIKLGS-KLNPEDFDEWF 762

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFAS-KTLCKECLFNE 41
             +W D I  F + H++  +  +   R   R +  L  ALES   +F S K + +E    E
Sbjct: 763  LAWRDHIHYFQNAHIVDQIVDLVEVRTGVRNTQCLRLALESFPHVFRSKKAVMREFFCME 822

Query: 40   KHES 29
            + ES
Sbjct: 823  EIES 826

[21][TOP]
>UniRef100_Q2QF34 p2 protein n=1 Tax=Blackberry chlorotic ringspot virus
            RepID=Q2QF34_9BROM
          Length = 804

 Score =  182 bits (463), Expect = 1e-44
 Identities = 94/171 (54%), Positives = 122/171 (71%), Gaps = 2/171 (1%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG+++ LPRD+E L  
Sbjct: 519  YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNISFVAASGDDSLIGSLQPLPRDKEDLCV 578

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFN E KFPHNQPFICSKFL+ +    G+K VL VPNPLKLL +LG K +   + D++Y
Sbjct: 579  SLFNFETKFPHNQPFICSKFLLVVECDDGTKEVLAVPNPLKLLQKLGPKTMQVTMIDDYY 638

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71
            QS  D + VF D  V R VA +   R    R+  L+LE+AL SL  + A++
Sbjct: 639  QSLCDILWVFEDADVCRRVAELAEFRAFKGRKKCLFLESALLSLPSLVANR 689

[22][TOP]
>UniRef100_O57162 Putative polymerase n=1 Tax=Spinach latent virus RepID=O57162_9BROM
          Length = 797

 Score =  177 bits (450), Expect = 4e-43
 Identities = 95/187 (50%), Positives = 123/187 (65%), Gaps = 1/187 (0%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQ-EFLF 401
            +QRRTGDA TYLGNT+VTL CL  VY+L +PN+ FV+ASGDDSLIG+VEELPR   EF++
Sbjct: 490  YQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVEELPRGPGEFIY 549

Query: 400  TTLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
              + N EAKFPHNQPFI  K L+++    G + V+ VPNP KLLI +G +       D+ 
Sbjct: 550  NPV-NFEAKFPHNQPFIWLKVLVSVDLEDGGREVIAVPNPAKLLIGMGRRDCQYQALDDL 608

Query: 220  YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41
            YQSW+D I  F D  V   VA + A+R  RR S+YL +AL SL   FA+K   K   +  
Sbjct: 609  YQSWLDVIYYFRDARVCEKVADLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYRL 668

Query: 40   KHESNVK 20
            + +  +K
Sbjct: 669  REQGCLK 675

[23][TOP]
>UniRef100_Q6RK13 P2 protein n=1 Tax=Parietaria mottle virus RepID=Q6RK13_9BROM
          Length = 805

 Score =  177 bits (449), Expect = 5e-43
 Identities = 88/171 (51%), Positives = 122/171 (71%), Gaps = 2/171 (1%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRRTGDA TYLGNT+VTL+ L +VY+L  P++ FV ASGDDSLIG++  LPRD+E L  
Sbjct: 526  YQRRTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 585

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFNLE KFPHNQPF+CSKFL+ +    G++ VL VPNPLK+L ++G K +   + D++Y
Sbjct: 586  SLFNLETKFPHNQPFLCSKFLLVVECDDGTEEVLAVPNPLKILQKMGPKNLQVTVLDDYY 645

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71
            QS  D + VF D  + R VA +  +R    +R  ++LE+AL SL  + A++
Sbjct: 646  QSLCDILWVFEDADICRRVAQLAEYRQFKGKRSCVFLESALLSLPSLVANR 696

[24][TOP]
>UniRef100_C7T304 p2 protein n=1 Tax=Parietaria mottle virus RepID=C7T304_9BROM
          Length = 806

 Score =  176 bits (447), Expect = 9e-43
 Identities = 87/171 (50%), Positives = 122/171 (71%), Gaps = 2/171 (1%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            +QRRTGDA TYLGNT+VTL+ L +VY+L  P++ FV ASGDDSLIG++  LPRD+E L  
Sbjct: 526  YQRRTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 585

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
            +LFNLE KFPHNQPF+CSKFL+ +    G++ VL VPNPLK+L ++G K +   + D++Y
Sbjct: 586  SLFNLETKFPHNQPFLCSKFLLVVECDDGTEEVLAVPNPLKILQKMGPKNLQVTVLDDYY 645

Query: 217  QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71
            QS  D + VF D  + R VA +  +R    ++  ++LE+AL SL  + A++
Sbjct: 646  QSLCDILWVFEDADICRRVAQLAEYRQFKGKKKCIFLESALLSLPSLVANR 696

[25][TOP]
>UniRef100_Q997A3 Putative polymerase p2 n=1 Tax=American plum line pattern virus
            RepID=Q997A3_9BROM
          Length = 740

 Score =  164 bits (416), Expect = 3e-39
 Identities = 86/184 (46%), Positives = 117/184 (63%), Gaps = 1/184 (0%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEEL-PRDQEFLF 401
            +QRRTGDA TYLGNT+VTL  L ++Y+L  PNV  VVASGDDSLIGT++ L PRD+E   
Sbjct: 534  YQRRTGDACTYLGNTLVTLCTLSYIYDLTSPNVGLVVASGDDSLIGTIKHLLPRDKEQFC 593

Query: 400  TTLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            +TLFN E KFPHNQPFICSKFL+     +G + V   P+P KLLIR+G K +    F+ W
Sbjct: 594  STLFNFETKFPHNQPFICSKFLVLDQLENGGERVNAYPDPYKLLIRVGVKFMTNTKFESW 653

Query: 220  YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41
             +S+ D+   ++    +  V  M  +RY+R    +L  AL  L  +  S+   +  LF +
Sbjct: 654  AESFFDSFSCYSTIESVSKVVEMAGYRYIRNSPKFLLPALHHLKYLCRSRDALRAGLFGK 713

Query: 40   KHES 29
            ++ S
Sbjct: 714  EYSS 717

[26][TOP]
>UniRef100_Q6PNM5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine angular
           mosaic virus RepID=Q6PNM5_9BROM
          Length = 127

 Score =  107 bits (267), Expect = 7e-22
 Identities = 52/74 (70%), Positives = 58/74 (78%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           +QRRTGDA TYLGNTIVTL  L +VY+L  P V FV ASGDDSLIG+ EELPR +E L  
Sbjct: 54  YQRRTGDACTYLGNTIVTLCVLSYVYDLSSPKVLFVTASGDDSLIGSTEELPRGKEELCV 113

Query: 397 TLFNLEAKFPHNQP 356
           +LFN E KFPHNQP
Sbjct: 114 SLFNFETKFPHNQP 127

[27][TOP]
>UniRef100_A7DWF6 RNA dependent RNA polymerase (Fragment) n=1 Tax=Spinach latent
           virus RepID=A7DWF6_9BROM
          Length = 111

 Score =  100 bits (248), Expect = 1e-19
 Identities = 47/64 (73%), Positives = 55/64 (85%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           +QR+TGDA TYLGNT+VTL CL  VY+L +PN+ FV+ASGDDSLIG+VEELPR  E LFT
Sbjct: 47  YQRKTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVEELPRGPEDLFT 106

Query: 397 TLFN 386
           TLFN
Sbjct: 107 TLFN 110

[28][TOP]
>UniRef100_A7DWF5 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prunus necrotic
           ringspot virus RepID=A7DWF5_9BROM
          Length = 111

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 43/64 (67%), Positives = 55/64 (85%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           +QRRTGDA TYLGNTI+TL+ L ++Y+L+DPNV FV+ASGDDSLIG+++ L R +EF F 
Sbjct: 47  YQRRTGDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKPLDRSEEFKFV 106

Query: 397 TLFN 386
           TLFN
Sbjct: 107 TLFN 110

[29][TOP]
>UniRef100_A7DWF2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Apple mosaic virus
           RepID=A7DWF2_9BROM
          Length = 111

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 44/64 (68%), Positives = 54/64 (84%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           +QRRTGDA TYLGNTI+TL+ L ++Y+L+DPN+ FV+ASGDDSLIG+   L RD EF FT
Sbjct: 47  YQRRTGDACTYLGNTIITLSALAYMYDLLDPNITFVIASGDDSLIGSRVPLDRDDEFKFT 106

Query: 397 TLFN 386
           TLFN
Sbjct: 107 TLFN 110

[30][TOP]
>UniRef100_A7DWF4 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus
           RepID=A7DWF4_9BROM
          Length = 110

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 46/64 (71%), Positives = 51/64 (79%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           +QRRTGDA TYLGNTIVTLA LC+VY+L   NV  VVASGDDSLIG+  EL R  E LF+
Sbjct: 46  YQRRTGDACTYLGNTIVTLAALCYVYDLQSSNVAMVVASGDDSLIGSYSELDRRFEHLFS 105

Query: 397 TLFN 386
           TLFN
Sbjct: 106 TLFN 109

[31][TOP]
>UniRef100_A7DWF7 RNA dependent RNA polymerase (Fragment) n=1 Tax=Tobacco streak
           virus RepID=A7DWF7_9BROM
          Length = 111

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 41/64 (64%), Positives = 53/64 (82%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           +QR+TGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG+ E LPR++E L  
Sbjct: 47  YQRKTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSREPLPREKEDLCV 106

Query: 397 TLFN 386
           +LFN
Sbjct: 107 SLFN 110

[32][TOP]
>UniRef100_A7DWF3 RNA dependent RNA polymerase (Fragment) n=1 Tax=Parietaria mottle
           virus RepID=A7DWF3_9BROM
          Length = 111

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 41/65 (63%), Positives = 52/65 (80%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           +QR TGDA TYLGNT+VTL+ L +VY+L  P++ FV ASGDDSLIG++  LPRD+E L  
Sbjct: 47  YQRLTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 106

Query: 397 TLFNL 383
           +LFNL
Sbjct: 107 SLFNL 111

[33][TOP]
>UniRef100_P29035 RNA-directed RNA polymerase 2A n=2 Tax=Tomato aspermy virus
            RepID=ORF2A_TAV
          Length = 828

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNT+VT++     Y+        ++ SGDDSL G   + P     LFT
Sbjct: 576  FQRRTGDAFTYFGNTLVTMSMFAWCYD--TSQFDKLIFSGDDSL-GFSIKAPVGDPSLFT 632

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDE- 224
            +LFN+EAK    + P+ICSKFL+T            VP+PL+ + RLGSKK+  D  D  
Sbjct: 633  SLFNMEAKVMEPSVPYICSKFLLT----DDFGNTFSVPDPLREIQRLGSKKIPLDEDDRS 688

Query: 223  ---WYQSWIDTIGVFND-HHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKE 56
                + S++D +   N  +       ++      R+    +   L +  K  A+    KE
Sbjct: 689  LHAHFMSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTANFNAYKE 748

Query: 55   CLFNEKHE 32
              ++EK +
Sbjct: 749  LYYSEKQQ 756

[34][TOP]
>UniRef100_Q8JW07 2a protein n=1 Tax=Spring beauty latent virus RepID=Q8JW07_9BROM
          Length = 831

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 50/115 (43%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + +  +L +    F   SGDDSLI + ++L  D E +F+
Sbjct: 542 FQRRTGDAFTYFGNTLVTMAMIAYTVDLSEATAIF---SGDDSLIISDKKLELDTE-VFS 597

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
           +LFN+E K    + P+ICSKFL+   T +G+  ++ +P+PL+ L R+  +K+  D
Sbjct: 598 SLFNMEIKVMDPSVPYICSKFLV--ETENGN--LVSIPDPLRELQRMAKRKILKD 648

[35][TOP]
>UniRef100_Q9JFY6 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9JFY6_9BROM
          Length = 857

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G  +  P      FT
Sbjct: 571  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSKLPPVGDPSKFT 627

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 628  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 683

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 684  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 742

Query: 58   ECLFNEKHE 32
            E  F+++ +
Sbjct: 743  ELYFSDRRQ 751

[36][TOP]
>UniRef100_P28727 RNA-directed RNA polymerase 2A n=1 Tax=Peanut stunt virus (strain J)
            RepID=ORF2A_PSVJ
          Length = 834

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 8/188 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNT+VT+A     Y+        ++ SGDDSL  ++  +    ++ FT
Sbjct: 559  FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            +LFN+EAK      P+ICSKFL+T    +       VP+PL+ L RLG+KK+     DE 
Sbjct: 616  SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671

Query: 220  Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62
            Y      S++D +       HH +  +      +Y ++      A+L    K   + ++ 
Sbjct: 672  YLKAHFMSFVDRLKFLPRMTHHTVAQLITFYEMKY-KKSGAECHASLGGFAKYSTNFSIY 730

Query: 61   KECLFNEK 38
            KE   +++
Sbjct: 731  KELYISDQ 738

[37][TOP]
>UniRef100_C0MNB3 2a protein n=1 Tax=Gayfeather mild mottle virus RepID=C0MNB3_9BROM
          Length = 777

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 52/112 (46%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A  C  Y+        ++ SGDDSL  +    P      FT
Sbjct: 573 FQRRTGDAFTYFGNTLVTMALFCWCYD--TEQFDRMLFSGDDSLAFS-SIAPVGDPSKFT 629

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV 245
           TLFN+EAK    + P+ICSKFL+T            VP+PL+ + RLGSKK+
Sbjct: 630 TLFNMEAKVMEPSVPYICSKFLLT----DEFGQTFSVPDPLREIQRLGSKKI 677

[38][TOP]
>UniRef100_A7VN22 2a protein n=1 Tax=Peanut stunt virus RepID=A7VN22_9BROM
          Length = 834

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNT+VT+A     Y+        ++ SGDDSL  ++  +    ++ FT
Sbjct: 559  FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            +LFN+EAK      P+ICSKFL+T    +       VP+PL+ L RLG+KK+     DE 
Sbjct: 616  SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671

Query: 220  Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62
            Y      S++D +       HH +  +      +Y ++      A L    K   + ++ 
Sbjct: 672  YLKAHFMSFVDRLKFLPRMTHHTVAQLITFYEMKY-KKSGAECHAMLGGFAKYSTNFSIY 730

Query: 61   KECLFNEK 38
            KE   +++
Sbjct: 731  KELYISDQ 738

[39][TOP]
>UniRef100_Q66145 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            MB-8) RepID=ORF2A_CMVMB
          Length = 857

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TL+N+EAK    + P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++H+
Sbjct: 744  ELYYSDRHQ 752

[40][TOP]
>UniRef100_Q0PP54 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
            RepID=Q0PP54_9BROM
          Length = 858

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++    S       VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLSDEFGS----TFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[41][TOP]
>UniRef100_C8KH76 2a protein n=1 Tax=Melandrium yellow fleck virus RepID=C8KH76_9BROM
          Length = 828

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNTIVT+A + + +++  P  +  + SGDDSL+  + + P     +F 
Sbjct: 543 FQRRTGDAFTYFGNTIVTMAMMAYTFDMNLP--ELAIFSGDDSLL-VLNDKPSIDTDIFQ 599

Query: 397 TLFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
            LFN+E K    + P++CSKFL  + T  GS  V+ VP+PL+ + R+  +K+  D
Sbjct: 600 RLFNMEVKIMEPSVPYVCSKFL--LETELGS--VVSVPDPLREIQRMSKRKILKD 650

[42][TOP]
>UniRef100_B6V8E8 2a protein n=1 Tax=Cucumber mosaic virus RepID=B6V8E8_9BROM
          Length = 858

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  F+++ +
Sbjct: 744  ELYFSDRRQ 752

[43][TOP]
>UniRef100_A2TLI8 2a n=1 Tax=Cucumber mosaic virus RepID=A2TLI8_9BROM
          Length = 858

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSPFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  F+++ +
Sbjct: 744  ELYFSDRRQ 752

[44][TOP]
>UniRef100_Q9YJS0 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9YJS0_9BROM
          Length = 821

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIVQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[45][TOP]
>UniRef100_Q6T7E6 2a protein n=1 Tax=Peanut stunt virus RepID=Q6T7E6_9BROM
          Length = 845

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A     Y+        ++ SGDDSL  +++ +  + + LFT
Sbjct: 575 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRLLFSGDDSLAFSLKPIVGNPD-LFT 631

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDE 224
           +LFN+EAK      P+ICSKFL+T            VP+PL+ L RLG+KK+  D  D+
Sbjct: 632 SLFNIEAKNMEPPVPYICSKFLLT----DELGHTFSVPDPLRELQRLGTKKIPDDDSDD 686

[46][TOP]
>UniRef100_Q6T7E1 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6T7E1_9BROM
          Length = 858

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMDPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKHRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[47][TOP]
>UniRef100_Q6T7D7 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6T7D7_9BROM
          Length = 858

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMDPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKHRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[48][TOP]
>UniRef100_Q83944 2a protein n=1 Tax=Olive latent virus 2 RepID=Q83944_OLV2
          Length = 787

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           +QRRTG+  TY GNT+VT+  +  VY L D      + SGDD+LI T   L   +  LF 
Sbjct: 566 YQRRTGNTATYFGNTLVTMIMMAEVYEL-DSLPFCGLFSGDDNLIVTDRPL-EGRVSLFP 623

Query: 397 TLFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            +FN+EAK     Q ++CSK+L T+        V PVP+P KLL + G+     +  D++
Sbjct: 624 NMFNMEAKVMRPGQNYMCSKYLCTV-----DGRVTPVPDPFKLLKKAGA-SCPLEHLDDF 677

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           Y+S++D         V   +  + AHRY
Sbjct: 678 YESFLDYTKYLVRDEVRTLIPRLMAHRY 705

[49][TOP]
>UniRef100_Q2MCK7 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus (strain
            Ri-8) RepID=Q2MCK7_9BROM
          Length = 857

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G  +  P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[50][TOP]
>UniRef100_Q18PS2 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q18PS2_9BROM
          Length = 857

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G  +  P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLSPVGDPSKFT 628

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TL+N+EAK    + P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[51][TOP]
>UniRef100_B6CWI1 2a protein n=1 Tax=Peanut stunt virus RepID=B6CWI1_9BROM
          Length = 834

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A     Y+        ++ SGDDSL  ++  +    ++ FT
Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           +LFN+EAK      P+ICSKFL+T    +       VP+PL+ L RLG+KK+     DE 
Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDEA 671

Query: 220 Y 218
           Y
Sbjct: 672 Y 672

[52][TOP]
>UniRef100_Q9IR76 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9IR76_9BROM
          Length = 857

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[53][TOP]
>UniRef100_Q8V393 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8V393_9BROM
          Length = 840

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[54][TOP]
>UniRef100_Q8QME1 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QME1_9BROM
          Length = 840

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[55][TOP]
>UniRef100_Q8QME0 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QME0_9BROM
          Length = 840

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[56][TOP]
>UniRef100_Q8AZL7 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8AZL7_9BROM
          Length = 840

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[57][TOP]
>UniRef100_Q75ND6 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q75ND6_9BROM
          Length = 840

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[58][TOP]
>UniRef100_Q6L6Q8 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6L6Q8_9BROM
          Length = 858

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[59][TOP]
>UniRef100_Q202D7 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q202D7_9BROM
          Length = 858

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[60][TOP]
>UniRef100_Q0PP56 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
            RepID=Q0PP56_9BROM
          Length = 858

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[61][TOP]
>UniRef100_B2ZHC4 2a protein n=1 Tax=Cucumber mosaic virus RepID=B2ZHC4_9BROM
          Length = 840

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[62][TOP]
>UniRef100_A6YQP2 2a n=1 Tax=Cucumber mosaic virus RepID=A6YQP2_9BROM
          Length = 840

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[63][TOP]
>UniRef100_A2THY8 2a protein n=1 Tax=Cucumber mosaic virus RepID=A2THY8_9BROM
          Length = 857

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G  +  P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 628

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TL+N+EAK    + P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[64][TOP]
>UniRef100_O40977 RNA-directed RNA polymerase 2A n=2 Tax=Cucumber mosaic virus
            RepID=ORF2A_CMVNT
          Length = 857

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[65][TOP]
>UniRef100_Q86783 RNA-directed RNA polymerase 2A n=2 Tax=Cucumber mosaic virus
            RepID=ORF2A_CMVK
          Length = 858

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[66][TOP]
>UniRef100_P16490 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            FNY) RepID=ORF2A_CMVFN
          Length = 857

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDALTY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDALTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[67][TOP]
>UniRef100_O39436 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            As) RepID=ORF2A_CMVAS
          Length = 858

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPCSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[68][TOP]
>UniRef100_C8CAI9 2a (Fragment) n=1 Tax=Cucumber mosaic virus RepID=C8CAI9_9BROM
          Length = 318

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 73  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 129

Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
           TLFN+EAK      P+ICSKFL+             VP+PL+ + RLG+KK+    N D 
Sbjct: 130 TLFNMEAKVMEPAVPYICSKFLL----FDEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 185

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
               + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 186 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 244

Query: 58  ECLFNEKHESNV 23
           E  ++++ + ++
Sbjct: 245 ELYYSDRQQCDL 256

[69][TOP]
>UniRef100_Q9YNL6 Putative RNA dependent RNA polymerase n=1 Tax=Peanut stunt virus
           RepID=Q9YNL6_9BROM
          Length = 834

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A     Y+        ++ SGDDSL  ++  +    ++ FT
Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           +LFN+EAK      P+ICSKFL+T    +       VP+PL+ L RLG+KK+     DE 
Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDWGLDES 671

Query: 220 Y 218
           Y
Sbjct: 672 Y 672

[70][TOP]
>UniRef100_Q9WA71 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9WA71_9BROM
          Length = 858

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSILPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSLFFELKYRKSGAEAALILGAFKKYTANFKSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[71][TOP]
>UniRef100_Q85065 2a protein n=1 Tax=Peanut stunt virus RepID=Q85065_9BROM
          Length = 834

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA T  GNT+VT+A     Y+        ++ SGDDSL  ++  +    ++ FT
Sbjct: 559  FQRRTGDAFTSFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            +LFN+EAK      P+ICSKFL+T    +       VP+PL+ L RLG+KK+     DE 
Sbjct: 616  SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671

Query: 220  Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62
            Y      S++D +       H+ +  +      +Y ++      A LE   K   + ++ 
Sbjct: 672  YLKAHFMSFVDRLKFLPRMTHYTVAQLTTFYEMKY-KKSGAECHAMLEGFAKYSTNFSIY 730

Query: 61   KECLFNEK 38
            KE   +++
Sbjct: 731  KELYISDQ 738

[72][TOP]
>UniRef100_B1VCT9 2a protein n=1 Tax=Peanut stunt virus RepID=B1VCT9_9BROM
          Length = 834

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A     Y+    +   ++ SGDDSL  ++  +    ++ FT
Sbjct: 564 FQRRTGDAFTYFGNTLVTMALFAWCYD--TDHFNRLLFSGDDSLAFSLNPIEGRSDW-FT 620

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           +LFN+EAK      P+ICSKFL+T            VP+PL+ L RLG+KK+     D+ 
Sbjct: 621 SLFNMEAKNMDPPTPYICSKFLLT----DELGHTFSVPDPLRELQRLGTKKIPDGGVDDS 676

Query: 220 Y 218
           Y
Sbjct: 677 Y 677

[73][TOP]
>UniRef100_P03594 RNA-directed RNA polymerase 2A n=1 Tax=Brome mosaic virus
           RepID=ORF2A_BMV
          Length = 822

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + +  +L D +    + SGDDSLI +  +   D + +FT
Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
           +LFN+E K    + P++CSKFL+   T  G+  ++ VP+PL+ + RL  +K+  D
Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGN--LVSVPDPLREIQRLAKRKILRD 627

[74][TOP]
>UniRef100_Q8QXZ6 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QXZ6_9BROM
          Length = 857

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[75][TOP]
>UniRef100_Q66144 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q66144_9BROM
          Length = 858

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFPWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[76][TOP]
>UniRef100_Q5QQK8 Replicase protein n=1 Tax=Cucumber mosaic virus RepID=Q5QQK8_9BROM
          Length = 772

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[77][TOP]
>UniRef100_C4TP50 Replicase n=1 Tax=Cucumber mosaic virus RepID=C4TP50_9BROM
          Length = 857

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[78][TOP]
>UniRef100_Q66136 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            B) RepID=ORF2A_CMVB
          Length = 857

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G  +  P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDSSKFT 628

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TL+N+EAK    + P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                +  ++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMQFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[79][TOP]
>UniRef100_Q9Q1T5 2a protein n=1 Tax=Peanut stunt virus RepID=Q9Q1T5_9BROM
          Length = 833

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A     Y+        ++ SGDDSL  ++  +    ++ FT
Sbjct: 562 FQRRTGDAFTYFGNTLVTMALFAWCYD--TDQFDRLLFSGDDSLAFSLSPVEGRSDW-FT 618

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           +LFN+EAK      P+ICSKFL+T            VP+PL+ L RLG+KK+     D+ 
Sbjct: 619 SLFNMEAKNMDPPTPYICSKFLLT----DDLGHTFSVPDPLRELQRLGTKKIPDGGVDDS 674

Query: 220 Y 218
           Y
Sbjct: 675 Y 675

[80][TOP]
>UniRef100_Q8QVF9 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8QVF9_9BROM
          Length = 840

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      E A  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNETAQVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[81][TOP]
>UniRef100_Q8B3N0 RNA dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
            RepID=Q8B3N0_9BROM
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[82][TOP]
>UniRef100_Q8B3M7 RNA dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
            RepID=Q8B3M7_9BROM
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[83][TOP]
>UniRef100_Q8B3M4 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8B3M4_9BROM
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LYAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[84][TOP]
>UniRef100_Q83261 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q83261_9BROM
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[85][TOP]
>UniRef100_Q75VK5 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
            RepID=Q75VK5_9BROM
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[86][TOP]
>UniRef100_O90707 RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=O90707_9BROM
          Length = 840

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
            TLFN++AK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 626  TLFNMKAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 682  LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740

Query: 58   ECLFNEKHESNV 23
            E  ++++ + ++
Sbjct: 741  ELYYSDRQQCDL 752

[87][TOP]
>UniRef100_C7C690 Replicase (Fragment) n=1 Tax=Cucumber mosaic virus
           RepID=C7C690_9BROM
          Length = 438

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 265 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 321

Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
           TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+    N D 
Sbjct: 322 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 377

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
               + S++D +  F D     C+  ++    L+      EAAL
Sbjct: 378 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAL 420

[88][TOP]
>UniRef100_B6VQB2 2a protein n=1 Tax=Cucumber mosaic virus RepID=B6VQB2_9BROM
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[89][TOP]
>UniRef100_B0I4W0 2a protein n=1 Tax=Cucumber mosaic virus RepID=B0I4W0_9BROM
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[90][TOP]
>UniRef100_Q83265 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            Y) RepID=ORF2A_CMVY
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[91][TOP]
>UniRef100_Q96711 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            Kor) RepID=ORF2A_CMVKO
          Length = 857

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[92][TOP]
>UniRef100_Q91F44 2a protein (Fragment) n=1 Tax=Cucumber mosaic virus
           RepID=Q91F44_9BROM
          Length = 176

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G  +  P      FT
Sbjct: 27  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 83

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           TL+N+EAK    + P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 84  TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 139

Query: 220 ----YQSWIDTI 197
               + S++D +
Sbjct: 140 LFAHFMSFVDRL 151

[93][TOP]
>UniRef100_Q8QXZ0 Putative RNA dependent RNA polymerase (Fragment) n=1 Tax=Cucumber
           mosaic virus RepID=Q8QXZ0_9BROM
          Length = 256

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 90  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 146

Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 147 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 202

Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
               + S++D +  F D     C+  ++    L+      EAAL
Sbjct: 203 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAAL 245

[94][TOP]
>UniRef100_Q80IV0 RNA-dependent-RNA polymerase n=1 Tax=Cucumber mosaic virus
            RepID=Q80IV0_9BROM
          Length = 857

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYRKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[95][TOP]
>UniRef100_Q65662 2a protein n=1 Tax=Brome mosaic virus RepID=Q65662_BMV
          Length = 822

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + +  +L D +    + SGDDSLI +  +   D + +FT
Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
           +LFN+E K    + P++CSKFL+   T  G+  ++ +P+P++ + RL  +K+  D
Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGN--LVSIPDPMREIQRLAKRKILRD 627

[96][TOP]
>UniRef100_Q20A32 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q20A32_9BROM
          Length = 858

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 573  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSILPPVGDPSKFT 629

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK    + P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 630  TLFNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYPDDDEF 685

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
                + S++D +  F D     C+  ++    L+      EAAL
Sbjct: 686  LFAHFMSFVDRLR-FLDRMSQSCIDQLSFFFELKYKKSGEEAAL 728

[97][TOP]
>UniRef100_Q66117 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            Ixora) RepID=ORF2A_CMVIX
          Length = 858

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++  GDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFPGDDSL-GFSVLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[98][TOP]
>UniRef100_Q83262 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            Iizuka) RepID=ORF2A_CMVII
          Length = 857

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TL+N+EAK    + P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[99][TOP]
>UniRef100_Q9IVE4 Polymerase n=1 Tax=Cucumber mosaic virus (strain Mf)
            RepID=Q9IVE4_9BROM
          Length = 857

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLIFSGDDSL-GFSLLPPVGDPSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ CSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYTCSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[100][TOP]
>UniRef100_Q91F43 2a protein (Fragment) n=1 Tax=Cucumber mosaic virus
           RepID=Q91F43_9BROM
          Length = 176

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 27  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 83

Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 84  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 139

Query: 220 ----YQSWIDTIGVFNDHHVIRCV 161
               + S++D +  F D     C+
Sbjct: 140 LFAHFMSFVDRL-KFLDRMTQSCI 162

[101][TOP]
>UniRef100_Q50L55 2a protein n=1 Tax=Cassia yellow blotch virus RepID=Q50L55_9BROM
          Length = 779

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT++ + + Y+L    +++   SGDDSL+    E    +  LF 
Sbjct: 525 FQRRTGDAFTYFGNTLVTMSMMAYCYDL--SKMEYCFFSGDDSLL-ISREKHSFEPLLFQ 581

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
           +LFN+E K    + P+ICSK+L+     +G +VV  VP+P++ + R+  +K+  D
Sbjct: 582 SLFNMEIKVMEPSLPYICSKYLL---ETTGGRVV-SVPDPVREIQRMSKRKIVKD 632

[102][TOP]
>UniRef100_B3GR05 2a protein n=1 Tax=Cucumber mosaic virus RepID=B3GR05_9BROM
          Length = 858

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 573  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLIFSGDDSL-GFSILPPVGDPSKFT 629

Query: 397  TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK    + P+ICSKF ++            VP+PL+ + RLG+KK+     DE+
Sbjct: 630  TLFNMEAKVMEPSVPYICSKFXLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDGDEF 685

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
                + S++D +  F D     C+  ++    L+      EAAL
Sbjct: 686  LFAHFMSFVDRL-KFLDRMSQSCIDQLSFFFELKYKKSGEEAAL 728

[103][TOP]
>UniRef100_A0SL68 2a protein n=1 Tax=Brome mosaic virus RepID=A0SL68_BMV
          Length = 822

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + +  +L D +    + SGDDSLI +  +   D + +FT
Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV 245
           +LFN+E K    + P++CSKFL+   T  G+ V   +P+P++ + RL  +K+
Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGNWV--SIPDPMREIQRLAKRKI 624

[104][TOP]
>UniRef100_Q65383 2a protein n=1 Tax=Broad bean mottle virus RepID=Q65383_BBMV
          Length = 827

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + + +++     +  + SGDDSL+      P     +F 
Sbjct: 540 FQRRTGDAFTYFGNTLVTMAMMAYCFDM--STAELAMFSGDDSLV-ICGSKPEFDPSIFQ 596

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADI 233
           +LFN+E K    + P+ICSKFL+     S    V  VP+P++ + RL  +K+  D+
Sbjct: 597 SLFNMEVKVMDPSLPYICSKFLLE----SEFGDVFSVPDPMREIQRLQKRKIPKDV 648

[105][TOP]
>UniRef100_Q6RKQ4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 3 RepID=Q6RKQ4_9CLOS
          Length = 538

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGN++V    L  V   +D    ++V SGDDSLI + + L  D   L + 
Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K F    P+ CSKFL+ +        +  VP+PLKL ++ G SK  + D+  E 
Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           +QS++D    FN   VI+ +A +   +Y
Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469

[106][TOP]
>UniRef100_O71189 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 3 RepID=O71189_9CLOS
          Length = 538

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGN++V    L  V   +D    ++V SGDDSLI + + L  D   L + 
Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K F    P+ CSKFL+ +        +  VP+PLKL ++ G SK  + D+  E 
Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           +QS++D    FN   VI+ +A +   +Y
Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469

[107][TOP]
>UniRef100_C4TP45 Replicase n=1 Tax=Cucumber mosaic virus RepID=C4TP45_9BROM
          Length = 857

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQ RTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572  FQGRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
            TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+KK+     DE+
Sbjct: 629  TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684

Query: 220  ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
                + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    K
Sbjct: 685  LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743

Query: 58   ECLFNEKHE 32
            E  ++++ +
Sbjct: 744  ELYYSDRRQ 752

[108][TOP]
>UniRef100_B3FQ65 RNA dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 3 RepID=B3FQ65_9CLOS
          Length = 538

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGN++V    L  V   +D    ++V SGDDSLI + + L  D   L + 
Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K F    P+ CSKFL+ +        +  VP+PLKL ++ G SK  + D+  E 
Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           +QS++D    FN   VI+ +A +   +Y
Sbjct: 442 FQSFVDLSRGFNREDVIQELAKLVTRKY 469

[109][TOP]
>UniRef100_Q65382 2a protein n=1 Tax=Broad bean mottle virus RepID=Q65382_BBMV
          Length = 827

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + + +++     +  + SGDDSL+      P     +F 
Sbjct: 540 FQRRTGDAFTYFGNTLVTMAMMAYCFDM--STAELAMFSGDDSLV-ICGSKPEFDPGVFQ 596

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADI 233
           +LFN+E K    + P+ICSKFL+     S    V  VP+P++ + RL  +K+  D+
Sbjct: 597 SLFNMEVKVMDPSLPYICSKFLLE----SEFGDVFSVPDPMREIQRLQKRKIPKDV 648

[110][TOP]
>UniRef100_Q0PP58 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
           RepID=Q0PP58_9BROM
          Length = 858

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNTIVT+A     Y+      + ++ SGDDSL G     P      FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628

Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           TLFN+EAK      P+ICSKFL++            VP+PL+ + RLG+K++     DE+
Sbjct: 629 TLFNMEAKVVEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKRIPYSDNDEF 684

Query: 220 ----YQSWIDTI 197
               + S++D +
Sbjct: 685 LFAHFMSFVDRL 696

[111][TOP]
>UniRef100_Q8BEM5 2a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM5_CCMV
          Length = 808

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + +  ++    V   + SGDDSL+   +  P     +F 
Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227
           +LFN+E K    + P++CSKFL+     +    ++ VP+P++ + RL  +K+  + ++  
Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643

Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137
             ++S+ D +   N  D  +I  +    A +Y
Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675

[112][TOP]
>UniRef100_Q8BEM2 2a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM2_CCMV
          Length = 808

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + +  ++    V   + SGDDSL+   +  P     +F 
Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227
           +LFN+E K    + P++CSKFL+     +    ++ VP+P++ + RL  +K+  + ++  
Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643

Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137
             ++S+ D +   N  D  +I  +    A +Y
Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675

[113][TOP]
>UniRef100_D0AB44 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus
           RepID=D0AB44_9BROM
          Length = 91

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 36/46 (78%), Positives = 39/46 (84%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIG 440
           +QRRTGDA TYLGNTIVTLA LC+VY+L   NV  VVASGDDSLIG
Sbjct: 46  YQRRTGDACTYLGNTIVTLAALCYVYDLQSSNVTMVVASGDDSLIG 91

[114][TOP]
>UniRef100_P20179 RNA-directed RNA polymerase 2A n=1 Tax=Cowpea chlorotic mottle
           virus RepID=ORF2A_CCMV
          Length = 808

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA TY GNT+VT+A + +  ++    V   + SGDDSL+   +  P     +F 
Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227
           +LFN+E K    + P++CSKFL+     +    ++ VP+P++ + RL  +K+  + ++  
Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643

Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137
             ++S+ D +   N  D  +I  +    A +Y
Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675

[115][TOP]
>UniRef100_D0AB43 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus
           RepID=D0AB43_9BROM
          Length = 91

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 36/46 (78%), Positives = 39/46 (84%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIG 440
           +QRRTGDA TYLGNTIVTLA LC+VY+L   NV  VVASGDDSLIG
Sbjct: 46  YQRRTGDACTYLGNTIVTLAALCYVYDLKSSNVAMVVASGDDSLIG 91

[116][TOP]
>UniRef100_Q9DUT2 Putative 2a protein n=1 Tax=Pelargonium zonate spot virus
           RepID=Q9DUT2_PZSV
          Length = 687

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
           FQRRTGDA T+ GNT+VT+A     Y+      + ++ +GDDSL  +   +    ++ F 
Sbjct: 488 FQRRTGDAFTFFGNTLVTMAMFSFCYDTR--QFEKMLFAGDDSLAISSSPIVGCSDY-FV 544

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
           +LFN+EAK      P+ICSKFL++             P+P++   RLG KK++AD  D  
Sbjct: 545 SLFNMEAKIMDPGVPYICSKFLVS----DELGRCFSAPDPIREFQRLGKKKISADNDDAL 600

Query: 220 YQSWI 206
           ++ ++
Sbjct: 601 FEQYV 605

[117][TOP]
>UniRef100_A4ZZ83 RNA-dependent RNA polymerase 2 (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 3 RepID=A4ZZ83_9CLOS
          Length = 342

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGN++V    L  V   +D    +VV SGDDSLI +   L  D   L + 
Sbjct: 129 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YDYVVVSGDDSLIFSKRPLDIDTVVL-SD 185

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K F    P+ CSKFL+ +        +  VP+PLKL ++ G SK  + D+  E 
Sbjct: 186 NFGFDVKVFNQAAPYFCSKFLVQV-----EDDLYFVPDPLKLFVKFGASKTSDIDLLHEI 240

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           +QS++D    FN   VI+ +  +   +Y
Sbjct: 241 FQSFVDLSRGFNREDVIQALVHLVTRKY 268

[118][TOP]
>UniRef100_Q6QCI3 Polymerase (Fragment) n=1 Tax=Mint vein banding-associated virus
           RepID=Q6QCI3_9CLOS
          Length = 520

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G + T+LGNTI T+A L   Y   D   +  + +GDDSLI   + L    E L   
Sbjct: 331 QRRSGASNTFLGNTITTMAILSMYYTYED--CELCMFAGDDSLILGSKSLDDCCE-LINK 387

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA-DIFDEW 221
            FN+E+KF HN  P+ CSK++     LS +   L VP+P K+L++LG    ++    DE 
Sbjct: 388 DFNMESKFIHNSTPYFCSKYI-----LSFNGKALVVPDPYKMLVKLGKSYFDSKSNVDER 442

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRP 125
           +QS+ D    +++  V+  +    + RY   P
Sbjct: 443 FQSFKDLTSSYDNDLVVSKLVFYHSLRYKPNP 474

[119][TOP]
>UniRef100_Q4EW63 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 2 RepID=Q4EW63_9CLOS
          Length = 459

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QR++G + T++GN++VTL  L   Y++   N + +  SGDDSLI +  E+    + + T 
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYVSGDDSLIFSRSEISNYADDICTD 306

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA--DIFDE 224
           +   E KF   + P+ CSKF++    + G K    VP+P KL ++LG+ K +A  D   E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDASMDFLFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    FND  +I+ +A + A +Y
Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389

[120][TOP]
>UniRef100_O71210 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 2 RepID=O71210_9CLOS
          Length = 459

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QR++G + T++GN++VTL  L   Y++   N + +  SGDDSLI +  E+    + + T 
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
           +   E KF   + P+ CSKF++    + G K    VP+P KL ++LG+ K  V+ D   E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    FND  +I+ +A + A +Y
Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389

[121][TOP]
>UniRef100_B7U5T6 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 2 RepID=B7U5T6_9CLOS
          Length = 459

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QR++G + T++GN++VTL  L   Y++   N + +  SGDDSLI +  E+    + + T 
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
           +   E KF   + P+ CSKF++    + G K    VP+P KL ++LG+ K  V+ D   E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    FND  +I+ +A + A +Y
Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389

[122][TOP]
>UniRef100_Q1PQK5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 3 RepID=Q1PQK5_9CLOS
          Length = 543

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGN+IV    L  V   +D    +VV SGDDSLI + + L  D   L + 
Sbjct: 330 QRRSGGANTWLGNSIVLCTLLSVVLRGLD--YDYVVISGDDSLIFSRQPLDVDTSVL-SD 386

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K F    P+ CSKF++ +        +  VP+PLKL ++ G SK  + D+  E 
Sbjct: 387 NFGFDVKMFNQAAPYFCSKFMVQV-----DDGLFFVPDPLKLFVKFGASKTSDIDLLHEI 441

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           +QS++D     N   VI+ +  +   +Y
Sbjct: 442 FQSFVDLSKGLNREDVIQALTHLVTRKY 469

[123][TOP]
>UniRef100_B2C4G0 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 3 RepID=B2C4G0_9CLOS
          Length = 541

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGN++V    L  V   +D    ++V SGDDS I + + L  D   L + 
Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVPRGLD--YSYIVVSGDDSPIFSRQPLDIDTSVL-SE 386

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K F    P+ CSKFL+ +        +  VP+PLKL ++ G SK  + D+  E 
Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           +QS++D    FN   VI+ +A +   +Y
Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469

[124][TOP]
>UniRef100_A4GWE5 RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated
           virus 3 RepID=A4GWE5_9CLOS
          Length = 200

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGN+IV    L  V   +D    +VV SGDDSLI + + L  D   L + 
Sbjct: 58  QRRSGGANTWLGNSIVLCTLLSVVLRGLD--YDYVVISGDDSLIFSRQPLDVDTSVL-SD 114

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K F    P+ CSKF++ +        +  VP+PLKL ++ G SK  + D+  E 
Sbjct: 115 NFGFDVKMFNQAAPYFCSKFMVQV-----DDGLFFVPDPLKLFVKFGASKTSDIDLLHEI 169

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           +QS++D     N   VI+ +  +   +Y
Sbjct: 170 FQSFVDLSKGLNREDVIQALTHLVTRKY 197

[125][TOP]
>UniRef100_Q49IH2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 2 RepID=Q49IH2_9CLOS
          Length = 459

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QR++G + T++GN++VTL  L   Y++   N + +  SGDDSLI +  E+    + + T 
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA--DIFDE 224
           +   E KF   + P+ CSKF++    + G K    VP+P KL ++LG+ K +A  D   E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDASMDFLFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    FND  +I+ +A + A +Y
Sbjct: 361 VFTSFKDLTTDFNDERLIQKLAELVAVKY 389

[126][TOP]
>UniRef100_C6GFJ8 1b n=1 Tax=Carrot yellow leaf virus RepID=C6GFJ8_9CLOS
          Length = 478

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 6/173 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T++GN++VTL  L   Y+L    ++ V  SGDDSLI + ++L    E +   
Sbjct: 263 QRRSGAANTWIGNSVVTLGILSLYYDL--AKMQGVFISGDDSLIFSSQKLSNHSEAICLE 320

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227
               EAKF   + P+ CSKFL+             VP+P KL+++LG   S+  +AD+F 
Sbjct: 321 T-GFEAKFMSPSVPYFCSKFLVFC-----EHKFFFVPDPYKLIVKLGQVRSEVEDADLF- 373

Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA--ALESLGKIFAS 74
           E + S+ D     +D  V+  +A +   +Y  +    L A  A+  LG  F+S
Sbjct: 374 EIFTSFKDLTKDMHDERVLEYLARLVEEKYDVKSRCVLSALHAVHCLGSNFSS 426

[127][TOP]
>UniRef100_P06012 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
            Q) RepID=ORF2A_CMVQ
          Length = 839

 Score = 70.9 bits (172), Expect = 7e-11
 Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
            FQRRTGDA TY GNTIVT+A     Y+        ++ SGDDSL  + +  P      FT
Sbjct: 569  FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625

Query: 397  TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNP-LKLLIRLGSKKV----NAD 236
            TLFN+EAK      P+ICSKF   M       +V    +P ++ + RLG+KK+    N D
Sbjct: 626  TLFNMEAKVMEPAVPYICSKFYSLM------SLVTRFQSPTIREIQRLGTKKIPYSDNND 679

Query: 235  IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLC 62
                 + S++D +  F D     C+  ++    L+      EAA  L +  K  A+    
Sbjct: 680  FLFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAY 738

Query: 61   KECLFNEKHESNV 23
            KE  ++++ + ++
Sbjct: 739  KELYYSDRQQCDL 751

[128][TOP]
>UniRef100_Q65854 RNA replicase (Fragment) n=1 Tax=Beet yellow stunt virus
           RepID=Q65854_9CLOS
          Length = 460

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QR++G + T++GN++VTL  L   Y++      FV  SGDDSLI + +E+    E +   
Sbjct: 251 QRKSGASNTWIGNSVVTLGILAMYYDVSKFQALFV--SGDDSLIFSADEIANYAEDICLE 308

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
           L   E KF   + P+ CSKFL+     +G K V  VP+P KLL++LG+  ++++ +   E
Sbjct: 309 L-GFETKFLTPSVPYFCSKFLV----FTGDKCVF-VPDPYKLLVKLGASGRRLSDEELFE 362

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  ++ +   +Y
Sbjct: 363 VFVSFRDLTKEFGDERVLNTLSELVHLKY 391

[129][TOP]
>UniRef100_Q19PH3 Replicase-associated protein (Fragment) n=1 Tax=Solanum
           violaefolium ringspot virus RepID=Q19PH3_9VIRU
          Length = 198

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 3/181 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+GD  T++GNTI  +A L +++++    + F   SGDDSL+   +         F+ 
Sbjct: 27  QRRSGDGGTFIGNTIFLMAVLSYIFDM--SKMDFATFSGDDSLLIADKRYLSCDSSKFSD 84

Query: 394 LFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDE 224
           LFNL+ KF     +   CSKFLI +           VP+P+KLL+RL     +N    +E
Sbjct: 85  LFNLDVKFFDKFEYYHFCSKFLIPV-----QDRWFFVPDPIKLLVRLSRCDLINWAHIEE 139

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFN 44
           +  S  D+   F D  V+R +      RY  + S   E  + SL  I     +  E LF+
Sbjct: 140 YRISLCDSTKFFGDIDVVRVLKEAVMERYAMQYS--FEEFIYSLRAIVTDPIMFME-LFD 196

Query: 43  E 41
           E
Sbjct: 197 E 197

[130][TOP]
>UniRef100_Q9Q6Q3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 1 RepID=Q9Q6Q3_9CLOS
          Length = 527

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 2/191 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGNT+V +  L       +P++  VV  GDDSLI +  EL  +   L  +
Sbjct: 344 QRRSGGANTWLGNTLVLMTLLAISLKGFEPDL--VVVCGDDSLIFSKNELVINDRILEES 401

Query: 394 LFNLEAKFP-HNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K      P+ CSK+L+  P          +P+P KL ++L   ++ N D+  E 
Sbjct: 402 -FGFDLKLTCQCVPYFCSKYLVRTP-----DHCYFLPDPFKLFLKLSLEREPNEDLLFEV 455

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41
           + S++D    F D + ++ +  M A RY   P  Y  AA   +  + A+    K   F+ 
Sbjct: 456 FTSFVDLTRGFGDENAVQQLVEMDAQRYGFNP--YAYAAFSLVHVLAANFVQFKRLFFDA 513

Query: 40  KHESNVKIKPR 8
                 K+K +
Sbjct: 514 DGAFGKKLKSK 524

[131][TOP]
>UniRef100_Q2V8A7 RNA-dependent RNA polymerase n=1 Tax=Grapevine leafroll-associated
           virus 2 RepID=Q2V8A7_9CLOS
          Length = 420

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QR++G + T++GN++VTL  L   Y++      ++  SGDDSLI + +++    + +   
Sbjct: 210 QRKSGASNTWIGNSLVTLGILSLYYDVRKFEALYI--SGDDSLIFSRDKISNYADDICAD 267

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
           +   E KF   + P+ CSKF++    + G K    VP+P KL ++LG+ K  V+ D   E
Sbjct: 268 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 321

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    FND  VI+ +A + A +Y
Sbjct: 322 TFTSFKDLTSDFNDERVIQKLAELVALKY 350

[132][TOP]
>UniRef100_Q8BEP8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine rootstock
           stem lesion associated virus RepID=Q8BEP8_9CLOS
          Length = 459

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QR++G + T++GN++VTL  L   Y++      +V  SGDDSLI +  ++    + +   
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVRHFEALYV--SGDDSLIFSRNKISNYADDICAD 306

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
           +   E KF   + P+ CSKF++    + G K    VP+P KL ++LG+ K  V+ D   E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    FND  VI+ +A + A +Y
Sbjct: 361 TFTSFKDLTSDFNDERVIQKLAELVALKY 389

[133][TOP]
>UniRef100_A1YLW5 RNA dependent-RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 1 RepID=A1YLW5_9CLOS
          Length = 527

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGNT+V +  L       +P++  VV  GDDSLI +  EL  +   L  +
Sbjct: 344 QRRSGGANTWLGNTLVLMTLLAISLKGSEPSL--VVVCGDDSLIFSKNELLINDRILEES 401

Query: 394 LFNLEAKFP-HNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            F  + K      P+ CSK+L+  P          +P+P KL ++L   ++ N D+  E 
Sbjct: 402 -FGFDLKLTCQCAPYFCSKYLVRTP-----DHCYFLPDPFKLFLKLSLEREPNEDLLFEV 455

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
           + S++D    + D + ++ + AM A RY   P  Y
Sbjct: 456 FTSFVDLTRGYGDENAVQQLVAMDAQRYGPNPYAY 490

[134][TOP]
>UniRef100_Q9DQ91 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
           wilt-associated virus 2 RepID=Q9DQ91_9CLOS
          Length = 559

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+LGNTIV +  L  +  L + +V ++V SGDDSLI + E L  D   L T 
Sbjct: 344 QRRSGGANTWLGNTIVVMTLLSIL--LEESHVDYIVVSGDDSLIFSTEPLDLDTHTL-TQ 400

Query: 394 LFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
            +  + K  +   P+ CSKFL+    L        VP+P KL ++ G  K  +     E 
Sbjct: 401 NYGFDCKLLNMTAPYFCSKFLVQCKDL-----CYFVPDPFKLFVKHGICKSTSVSDLHER 455

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
           + S++D         V+  VA     +Y R    Y
Sbjct: 456 FMSFVDVTKDLVSEDVVAAVAECVLWKYHRTNYTY 490

[135][TOP]
>UniRef100_O39852 RNA polymerase n=1 Tax=Grapevine leafroll-associated virus 2
           RepID=O39852_9CLOS
          Length = 420

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QR++G + T++GN++VTL  L   Y++   N + +  SGDDSLI +  E+    + + T 
Sbjct: 210 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 267

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
           +   E KF   + P+ CSKF++    + G K    V +P KL ++LG+ K  V+ D   E
Sbjct: 268 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VLDPYKLFVKLGAVKEDVSMDSLFE 321

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    FND  +I+ +A + A +Y
Sbjct: 322 TFTSFKDLTSDFNDERLIQKLAELVALKY 350

[136][TOP]
>UniRef100_Q05983 Non-structural polyprotein protein n=1 Tax=Raspberry bushy dwarf
            virus RepID=Q05983_RBDV
          Length = 1694

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPN---VKFVVASGDDSLIGTVEELPRDQEF 407
            FQRRTGDA T+LGN++VT A L  V  + DP+   +++++  GDDSLI +   +    E 
Sbjct: 1503 FQRRTGDAFTFLGNSLVTAAMLAFV--ISDPDREKIRYMLVGGDDSLICSYGPIQVPLEP 1560

Query: 406  LFTTLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NAD 236
            L   +FN+  K      P+  S++LI          +L VP+P KLL++LG K V  N  
Sbjct: 1561 L-GDIFNMSCKLVQPACPYFASRYLIRR-----GDEILCVPDPYKLLVKLGRKDVPDNQA 1614

Query: 235  IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLR-RPSLY 116
               E      D+     D  V + +A +   RY +  PSLY
Sbjct: 1615 SLCEIRTGLADSAKYIFDDIVKQKLAILVQVRYNKAAPSLY 1655

[137][TOP]
>UniRef100_Q15GA4 286 kDa polyprotein n=1 Tax=Citrus leprosis virus C
            RepID=Q15GA4_9VIRU
          Length = 2512

 Score = 67.4 bits (163), Expect = 8e-10
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398
            QRR+GD  T++GNT+  +A     ++L    +K  V SGDDS L+G   +L  D +  F+
Sbjct: 2327 QRRSGDGGTFIGNTLFLIALCARSFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383

Query: 397  TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227
             LFNL+ KF  N  +   CSKFLI +           +P+P+KL IRL     VN    +
Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLYIRLARLDLVNWGHIE 2438

Query: 226  EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            E+  S  DT   + D  ++R ++     RY
Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468

[138][TOP]
>UniRef100_UPI00001678EC polyprotein n=2 Tax=Little cherry virus 1 RepID=UPI00001678EC
          Length = 2806

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L N++ TLA L  VY+L D  +  ++ SGDDSLI + +E+  ++      
Sbjct: 2627 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 2683

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233
             F ++AKF  N  P+ CSKF+I +        +  VP+P++   +L +     +  +  +
Sbjct: 2684 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSTPVTLVQLEHPTL 2738

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
              E + S+ D +G + D +VI  V    + +Y
Sbjct: 2739 LRERFTSYRDLMGSYFDENVIIAVERFVSLKY 2770

[139][TOP]
>UniRef100_Q1KZ59 Replicase n=1 Tax=Citrus leprosis virus C RepID=Q1KZ59_9VIRU
          Length = 2512

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398
            QRR+GD  T++GNT+  +A     ++L    +K  V SGDDS L+G   +L  D +  F+
Sbjct: 2327 QRRSGDGGTFIGNTLFLIALCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383

Query: 397  TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227
             LFNL+ KF  N  +   CSKFLI +           +P+P+KL IRL     VN    +
Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 2438

Query: 226  EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            E+  S  DT   + D  ++R ++     RY
Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468

[140][TOP]
>UniRef100_O40960 RNA polymerase (POL) n=1 Tax=Little cherry virus 1
           RepID=O40960_9CLOS
          Length = 515

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L N++ TLA L  VY+L D  +  ++ SGDDSLI + +E+  ++      
Sbjct: 336 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 392

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233
            F ++AKF  N  P+ CSKF+I +        +  VP+P++   +L +     +  +  +
Sbjct: 393 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSTPVTLVQLEHPTL 447

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             E + S+ D +G + D +VI  V    + +Y
Sbjct: 448 LRERFTSYRDLMGSYFDENVIIAVERFVSLKY 479

[141][TOP]
>UniRef100_B9VB57 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=B9VB57_9CLOS
          Length = 477

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389

[142][TOP]
>UniRef100_B9VB33 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=B9VB33_9CLOS
          Length = 477

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389

[143][TOP]
>UniRef100_B9VB09 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=B9VB09_9CLOS
          Length = 477

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389

[144][TOP]
>UniRef100_O10468 57-kDa RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus
           tristeza virus RepID=O10468_9CLOS
          Length = 494

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 378 LFTSFKDXTQDFGDQVVLEKLKLLVEXKY 406

[145][TOP]
>UniRef100_C6ZED6 Polyprotein n=1 Tax=Little cherry virus 1 RepID=C6ZED6_9CLOS
          Length = 2807

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L N++ TLA L  VY+L D  +  ++ SGDDSLI + +E+  ++      
Sbjct: 2628 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 2684

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233
             F ++AKF  N  P+ CSKF+I +        +  VP+P++   +L S     +  +  +
Sbjct: 2685 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSSPVTLVQLEHPTL 2739

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
              E + S+ D + ++ D +VI  V    + +Y
Sbjct: 2740 LRERFTSYRDLMVLYFDENVIIAVERFVSLKY 2771

[146][TOP]
>UniRef100_B9VB21 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=B9VB21_9CLOS
          Length = 477

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSSEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389

[147][TOP]
>UniRef100_Q9IFW9 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9IFW9_9CLOS
          Length = 477

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDNTQDFGDQVVLEKLKLLVEIKY 389

[148][TOP]
>UniRef100_Q9DTG4 54-kDa RNA-depended RNA polymerase (Fragment) n=1 Tax=Citrus
           tristeza virus RepID=Q9DTG4_9CLOS
          Length = 477

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPKYKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389

[149][TOP]
>UniRef100_Q2LK65 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q2LK65_9CLOS
          Length = 477

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389

[150][TOP]
>UniRef100_Q1AF88 Polyprotein n=1 Tax=Citrus leprosis virus C RepID=Q1AF88_9VIRU
          Length = 2512

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398
            QRR+GD  T++GNT+  +      ++L    +K  V SGDDS L+G   +L  D +  F+
Sbjct: 2327 QRRSGDGGTFIGNTLFLIVLCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383

Query: 397  TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227
             LFNL+ KF  N  +   CSKFLI +           +P+P+KL IRL     VN    +
Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 2438

Query: 226  EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            E+  S  DT   + D  ++R ++     RY
Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468

[151][TOP]
>UniRef100_C6F419 RDRP protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=C6F419_9CLOS
          Length = 477

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389

[152][TOP]
>UniRef100_B5THB8 p1b (Fragment) n=2 Tax=Citrus tristeza virus RepID=B5THB8_9CLOS
          Length = 494

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 378 LFTSFKDNTQDFGDQVVLEKLKLLVEIKY 406

[153][TOP]
>UniRef100_B5THA6 p1b (Fragment) n=1 Tax=Citrus tristeza virus RepID=B5THA6_9CLOS
          Length = 494

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 378 LFTSFKDITQDFGDQVVLEKLKLLVETKY 406

[154][TOP]
>UniRef100_UPI0000163DDF RNA-dependant RNA polymerase n=1 Tax=Sweet potato chlorotic stunt
           virus RepID=UPI0000163DDF
          Length = 505

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VT+  L +VY+L D  +  ++ SGDDSLI + ++L      L   
Sbjct: 326 QRRTGSPNTWLSNTLVTMGMLLNVYDLDD--IDLMLVSGDDSLIFSKKQLENKTNEL-NI 382

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230
            F  EAKF  N  P+ CSKF++      GS  V+P P      L + +RL S  +     
Sbjct: 383 NFGFEAKFIENSVPYFCSKFIVDD---RGSIKVVPDPVRFFEKLSVPVRL-SDFLAETTL 438

Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            E + S+ D +  +++  V   V ++ + RY
Sbjct: 439 RERFTSYKDLMSEYDNDSVCILVDSLISKRY 469

[155][TOP]
>UniRef100_Q8JJW9 Polyprotein n=2 Tax=Sweet potato chlorotic stunt virus
            RepID=Q8JJW9_9CLOS
          Length = 2492

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VT+  L +VY+L D  +  ++ SGDDSLI + ++L      L   
Sbjct: 2313 QRRTGSPNTWLSNTLVTMGMLLNVYDLDD--IDLMLVSGDDSLIFSKKQLENKTNEL-NI 2369

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230
             F  EAKF  N  P+ CSKF++      GS  V+P P      L + +RL S  +     
Sbjct: 2370 NFGFEAKFIENSVPYFCSKFIVDD---RGSIKVVPDPVRFFEKLSVPVRL-SDFLAETTL 2425

Query: 229  DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             E + S+ D +  +++  V   V ++ + RY
Sbjct: 2426 RERFTSYKDLMSEYDNDSVCILVDSLISKRY 2456

[156][TOP]
>UniRef100_P87588 54-kDa RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus
           tristeza virus RepID=P87588_9CLOS
          Length = 477

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           Q R+G + T++GN++VTL  L   Y+  D   + ++ SGDDSLI + E++     E    
Sbjct: 249 QPRSGGSNTWIGNSLVTLGILSLYYD--DSKFELLLISGDDSLIYSKEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389

[157][TOP]
>UniRef100_D0EAN2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza
           virus RepID=D0EAN2_9CLOS
          Length = 503

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI +  E+     E    
Sbjct: 280 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKAEIRNFSSEICLE 337

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G++    +P+P KLL++LG+   K+  D   E
Sbjct: 338 TGFETKFMSP-SVPYFCSKFVVQ----TGNRTCF-IPDPYKLLVKLGAPQYKLTDDELFE 391

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            Y S+ D    F D  V+  +  +   +Y
Sbjct: 392 LYTSFKDVTQDFGDQVVLEKLKLLVEAKY 420

[158][TOP]
>UniRef100_A8RS54 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Plum bark necrosis
           stem pitting-associated virus RepID=A8RS54_9CLOS
          Length = 524

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 8/194 (4%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-FT 398
           QRRTG A T+LGNT+V +A +  V  L   N   +  SGDDS++      P D +   + 
Sbjct: 330 QRRTGTATTWLGNTVVNMALMARV--LGCENFSSMAFSGDDSIL--FHHSPLDLDISNYE 385

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224
             F  + K F    P+ CSKF +      GS  +  VP+P+KL + LGS+K + + +  E
Sbjct: 386 LHFAFDVKLFRMTVPYFCSKFFVV-----GSSGLNFVPDPVKLFVSLGSEKNDDESVMRE 440

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHR-----YLRRPSLYLEAALESLGKIFASKTLCK 59
            + S++D    + D  V   +  + + +     +L      L +   + G+      LC+
Sbjct: 441 RFVSFLDLTKSYEDLTVCDNMTTLVSVKWGYSDFLSCSLFALHSLRANFGQFMRLWRLCQ 500

Query: 58  ECLFNEKHESNVKI 17
           + +  EK E+  K+
Sbjct: 501 QNVVFEKFENRNKL 514

[159][TOP]
>UniRef100_UPI0000D9FD99 putative RNA dependent RNA polymerase; RdRp n=1 Tax=Citrus leprosis
           virus C RepID=UPI0000D9FD99
          Length = 440

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398
           QRR+GD  T++GNT+  +A     ++L    +K  V SGDDS L+G   +L  D +  F+
Sbjct: 309 QRRSGDGGTFIGNTLFLIALCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 365

Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227
            LFNL+ KF  N  +   CSKFLI +           +P+P+KL IRL     VN    +
Sbjct: 366 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 420

Query: 226 EWYQSWIDTIGVFNDHHVIR 167
           E+  S  DT   + D  ++R
Sbjct: 421 EYRISLKDTTKYYCDDSIVR 440

[160][TOP]
>UniRef100_UPI0000164AC8 401-kDa viral polyprotein n=2 Tax=Citrus tristeza virus
            RepID=UPI0000164AC8
          Length = 3582

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
            QRR+G + T++GN++VTL  L   Y++       ++ SGDDSLI + E++     E    
Sbjct: 3348 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 3405

Query: 397  TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227
            T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG   +K  + ++F 
Sbjct: 3406 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 3458

Query: 226  EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            E + S+ D    F D  V+  +  +   +Y
Sbjct: 3459 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 3488

[161][TOP]
>UniRef100_Q66238 57-kDa RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus
           tristeza virus RepID=Q66238_9CLOS
          Length = 500

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++       ++ SGDDSLI + E++     E    
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 323

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG   +K  + ++F 
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 376

Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           E + S+ D    F D  V+  +  +   +Y
Sbjct: 377 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 406

[162][TOP]
>UniRef100_D0EAM0 RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza
           virus RepID=D0EAM0_9CLOS
          Length = 494

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 323

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    +P+P KLL++LG+   K+  +   E
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQNKLTDEELFE 377

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 378 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 406

[163][TOP]
>UniRef100_B9VB45 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=B9VB45_9CLOS
          Length = 477

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F +  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGNQVVLEKLKLLVEAKY 389

[164][TOP]
>UniRef100_B5THD0 p1b (Fragment) n=2 Tax=Citrus tristeza virus RepID=B5THD0_9CLOS
          Length = 500

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++       ++ SGDDSLI + E++     E    
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 323

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG   +K  + ++F 
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 376

Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           E + S+ D    F D  V+  +  +   +Y
Sbjct: 377 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 406

[165][TOP]
>UniRef100_UPI0000163D39 polyprotein n=2 Tax=Lettuce infectious yellows virus
            RepID=UPI0000163D39
          Length = 2379

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VTL  +   Y++ D  +  ++ SGDDSLI + + LP   + +   
Sbjct: 2200 QRRTGSPNTWLSNTLVTLGMMLSSYDIDD--IDLLLVSGDDSLIFSRKHLPNKTQEI-NK 2256

Query: 394  LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
             F +EAK+   + P+ CSKF++    L+G   V  +P+P++   +L         VN  +
Sbjct: 2257 NFGMEAKYIEKSSPYFCSKFIV---ELNGKLKV--IPDPIRFFEKLSIPIRQEDFVNGSV 2311

Query: 232  FDEWYQSWIDTIGVF-NDHHVIRCVAAMTAHRY 137
              E + S+ D +  + ND  VIR   A+  +RY
Sbjct: 2312 VKERFISFKDLMKEYDNDVAVIRIDEAV-CYRY 2343

[166][TOP]
>UniRef100_Q83045 RNA-dependent RNA polymerase n=1 Tax=Lettuce infectious yellows
           virus RepID=Q83045_LIYV
          Length = 476

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VTL  +   Y++ D  +  ++ SGDDSLI + + LP   + +   
Sbjct: 297 QRRTGSPNTWLSNTLVTLGMMLSSYDIDD--IDLLLVSGDDSLIFSRKHLPNKTQEI-NK 353

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
            F +EAK+   + P+ CSKF++    L+G   V  +P+P++   +L         VN  +
Sbjct: 354 NFGMEAKYIEKSSPYFCSKFIV---ELNGKLKV--IPDPIRFFEKLSIPIRQEDFVNGSV 408

Query: 232 FDEWYQSWIDTIGVF-NDHHVIRCVAAMTAHRY 137
             E + S+ D +  + ND  VIR   A+  +RY
Sbjct: 409 VKERFISFKDLMKEYDNDVAVIRIDEAV-CYRY 440

[167][TOP]
>UniRef100_UPI00001BBB39 polyprotein n=1 Tax=Little cherry virus 2 RepID=UPI00001BBB39
          Length = 2150

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG + T+LGNTIV +  L +V N  DPN  FV  SGDDSL+     L RD  +    
Sbjct: 1971 QRRTGGSNTWLGNTIVNMVLLAYVKN-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 2023

Query: 394  LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236
              +LE  F     P   P+ CSK++I     +    +  VP+  KL+ +LG    +  A+
Sbjct: 2024 KLSLELGFDVKFTPVATPYFCSKYII-----NTEDRIFIVPDIFKLVTKLGRVFARTKAE 2078

Query: 235  IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80
               E ++S+ DTI  F    V+  +A     +Y     +Y  A A+  +G  F
Sbjct: 2079 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 2130

[168][TOP]
>UniRef100_Q9Q703 P348 n=1 Tax=Beet yellows virus RepID=Q9Q703_9CLOS
          Length = 3090

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QR++G + T++GN+IVTL  L   Y       K +  SGDDSLI +   +    + + T 
Sbjct: 2879 QRKSGASNTWIGNSIVTLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2936

Query: 394  LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
            L   E KF   + P+ CSKF +    ++G  V   VP+P KLL++LG+ K  V+ +   E
Sbjct: 2937 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2990

Query: 223  WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             + S+ D      D  VI  +  +   +Y
Sbjct: 2991 VFTSFRDLTKDLVDERVIELLTHLVHSKY 3019

[169][TOP]
>UniRef100_Q7T737 RNA-dependent RNA polymerase n=1 Tax=Little cherry virus 2
           RepID=Q7T737_9CLOS
          Length = 515

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG + T+LGNTIV +  L +V N  DPN  FV  SGDDSL+     L RD  +    
Sbjct: 336 QRRTGGSNTWLGNTIVNMVLLAYVKN-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 388

Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236
             +LE  F     P   P+ CSK++I     +    +  VP+  KL+ +LG    +  A+
Sbjct: 389 KLSLELGFDVKFTPVATPYFCSKYII-----NTEDRIFIVPDIFKLVTKLGRVFARTKAE 443

Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80
              E ++S+ DTI  F    V+  +A     +Y     +Y  A A+  +G  F
Sbjct: 444 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 495

[170][TOP]
>UniRef100_O89906 Fusion protein n=1 Tax=Beet yellows virus RepID=O89906_9CLOS
          Length = 3070

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QR++G + T++GN+IVTL  L   Y       K +  SGDDSLI +   +    + + T 
Sbjct: 2859 QRKSGASNTWIGNSIVTLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2916

Query: 394  LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
            L   E KF   + P+ CSKF +    ++G  V   VP+P KLL++LG+ K  V+ +   E
Sbjct: 2917 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2970

Query: 223  WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             + S+ D      D  VI  +  +   +Y
Sbjct: 2971 VFTSFRDLTKDLVDERVIELLTHLVHSKY 2999

[171][TOP]
>UniRef100_UPI00004FF933 polymerase n=1 Tax=Blackberry yellow vein-associated virus
           RepID=UPI00004FF933
          Length = 505

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VTL  +   Y + D  +  ++ SGDDSLI + E+LP     +   
Sbjct: 326 QRRTGSPNTWLSNTLVTLGIILSTYKIDD--IDLLLVSGDDSLIFSKEDLPNLANQI-NQ 382

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
            F +EAKF  N  P+ CSKF+I          +  VP+P++   +L         ++  +
Sbjct: 383 DFGMEAKFIVNSVPYFCSKFII-----EDRGEIKVVPDPVRFFEKLSVPIRLEDFLSETL 437

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             E Y S+ D +  F+   V   V  +   RY
Sbjct: 438 LKEKYTSFKDLMVFFDSDTVCVLVDRLICIRY 469

[172][TOP]
>UniRef100_Q5ICW0 ORF 1a/1b fusion polyprotein n=2 Tax=Blackberry yellow
            vein-associated virus RepID=Q5ICW0_9CLOS
          Length = 2435

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VTL  +   Y + D  +  ++ SGDDSLI + E+LP     +   
Sbjct: 2256 QRRTGSPNTWLSNTLVTLGIILSTYKIDD--IDLLLVSGDDSLIFSKEDLPNLANQI-NQ 2312

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
             F +EAKF  N  P+ CSKF+I          +  VP+P++   +L         ++  +
Sbjct: 2313 DFGMEAKFIVNSVPYFCSKFII-----EDRGEIKVVPDPVRFFEKLSVPIRLEDFLSETL 2367

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
              E Y S+ D +  F+   V   V  +   RY
Sbjct: 2368 LKEKYTSFKDLMVFFDSDTVCVLVDRLICIRY 2399

[173][TOP]
>UniRef100_B2BD41 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
           wilt-associated virus 5 RepID=B2BD41_9CLOS
          Length = 404

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVA-SGDDSLIGTVEELPRDQEFLFT 398
           QRRTG A T++GNT+V +  L H     D N    VA +GDDSLI    ++P     ++ 
Sbjct: 225 QRRTGAANTWIGNTLVNMVLLSHA---CDVNTFDAVAFAGDDSLI-LKRDVPGVHYDVYD 280

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224
           + +  + K +    P+ C KFL+      G+K V+ +P+P K+ ++ G ++   D +  E
Sbjct: 281 SKYEFDVKYYSEATPYFCGKFLL----WDGTKTVV-MPDPFKIFVKFGRERPPEDEVLKE 335

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
            ++S+ D    ++  H +R ++ +   ++      Y
Sbjct: 336 LWRSFFDVTRNYDSEHNVRTLSLLLGVKWANSVHAY 371

[174][TOP]
>UniRef100_UPI00001D9007 ORF 1b; RdRp; viral polymerase n=1 Tax=Beet pseudo-yellows virus
           RepID=UPI00001D9007
          Length = 505

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VTL  +   Y+L D  +  ++ SGDDSLI + + L ++Q      
Sbjct: 326 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 382

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
            F +EAKF  N  P+ CSKF+I      GS  VL  P+P++   +L      +D     +
Sbjct: 383 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGVM 437

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             E Y S+ D +  +N    I  V A+ + RY
Sbjct: 438 LRERYTSYKDLMVGYNLDTNIILVDALISVRY 469

[175][TOP]
>UniRef100_Q8JTI2 RNA-dependent RNA polymerase n=1 Tax=Little cherry virus 2
           RepID=Q8JTI2_9CLOS
          Length = 515

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG + T+LGNTIV +  L +V +  DPN  FV  SGDDSL+     L RD  +    
Sbjct: 336 QRRTGGSNTWLGNTIVNMVLLAYVKD-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 388

Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236
             +LE  F     P   P+ CSK+LI     +    +  VP+  KL+ +LG    +  A+
Sbjct: 389 KLSLELGFDVKFTPVATPYFCSKYLI-----NTEDRIFVVPDIFKLVTKLGRVFARTKAE 443

Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80
              E ++S+ DTI  F    V+  +A     +Y     +Y  A A+  +G  F
Sbjct: 444 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 495

[176][TOP]
>UniRef100_Q806Y8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cucumber yellows
           virus RepID=Q806Y8_9CLOS
          Length = 505

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VTL  +   Y+L D  +  ++ SGDDSLI + + L ++Q      
Sbjct: 326 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 382

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
            F +EAKF  N  P+ CSKF+I      GS  VL  P+P++   +L      S   + ++
Sbjct: 383 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGEM 437

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             E Y S+ D +  +N    I  V ++ + RY
Sbjct: 438 LRERYTSYKDLMVGYNLDTNIILVDSLISVRY 469

[177][TOP]
>UniRef100_Q6VRA8 ORF 1a/1b fusion polyprotein n=2 Tax=Beet pseudo-yellows virus
            RepID=Q6VRA8_9CLOS
          Length = 2441

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VTL  +   Y+L D  +  ++ SGDDSLI + + L ++Q      
Sbjct: 2262 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 2318

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
             F +EAKF  N  P+ CSKF+I      GS  VL  P+P++   +L      +D     +
Sbjct: 2319 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGVM 2373

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
              E Y S+ D +  +N    I  V A+ + RY
Sbjct: 2374 LRERYTSYKDLMVGYNLDTNIILVDALISVRY 2405

[178][TOP]
>UniRef100_A2ID04 P349 (Fragment) n=2 Tax=Citrus tristeza virus RepID=A2ID04_9CLOS
          Length = 264

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 201

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 255

Query: 223 WYQSWID 203
            + S+ D
Sbjct: 256 LFTSFKD 262

[179][TOP]
>UniRef100_B8YDL2 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=B8YDL2_9CLOS
          Length = 477

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI +   +     E    
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSRAPISNFSSEICLE 306

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    +P+P KLL++LG+   K+  D   E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQYKLTDDELFE 360

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKFLVEAKY 389

[180][TOP]
>UniRef100_B0F3U3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza
           virus RepID=B0F3U3_9CLOS
          Length = 508

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI +   +     E    
Sbjct: 280 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSRAPISNFSSEICLE 337

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    +P+P KLL++LG+   K+  D   E
Sbjct: 338 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQYKLTDDELFE 391

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            + S+ D    F D  V+  +  +   +Y
Sbjct: 392 LFTSFKDITQDFGDQVVLEKLKFLVEAKY 420

[181][TOP]
>UniRef100_A0MBW4 Polymerase (Fragment) n=1 Tax=Raspberry leaf mottle virus
           RepID=A0MBW4_9CLOS
          Length = 467

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++ +D       
Sbjct: 249 QRRSGGSNTWIGNSLVTLGLLSMYYDV--SKFRLLLISGDDSLIYSDEKI-KDHSSQICL 305

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK---VNADIFD 227
               E KF   + P+ CSKF++     +GS     VP+P KLL++LG       + D+F 
Sbjct: 306 ETGFETKFLSPSVPYFCSKFVVQ----TGSMTYF-VPDPYKLLVKLGGSTPFVTDVDLF- 359

Query: 226 EWYQSWIDTIGVFNDHHVI 170
           E + S+ D    F DH V+
Sbjct: 360 EAFVSFRDLTRAF-DHQVM 377

[182][TOP]
>UniRef100_Q99FM0 Putative RNA-dependent RNA polymerase (Fragment) n=1 Tax=Little
           cherry virus 2 RepID=Q99FM0_9CLOS
          Length = 180

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG + T+LGNTIV +  L +V +  DPN  FV  SGDDSL+     L RD  +    
Sbjct: 44  QRRTGGSNTWLGNTIVNMVLLAYVKD-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 96

Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236
             +LE  F     P   P+ CSK+LI     +    +  VP+  KL+ +LG    +  A+
Sbjct: 97  KLSLELGFDVKFTPVATPYFCSKYLI-----NTEDRIFVVPDIFKLVTKLGRVFARTKAE 151

Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVA 158
              E ++S+ DTI  F    V+  +A
Sbjct: 152 GL-ETFESFKDTIKWFGRDDVVCLLA 176

[183][TOP]
>UniRef100_Q08534 Methyltransferase/helicase/RNA-directed RNA polymerase n=3 Tax=Beet
            yellows virus RepID=R1AB_BYVU
          Length = 3094

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QR++G + T++GN+I TL  L   Y       K +  SGDDSLI +   +    + + T 
Sbjct: 2879 QRKSGASNTWIGNSIETLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2936

Query: 394  LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
            L   E KF   + P+ CSKF +    ++G  V   VP+P KLL++LG+ K  V+ +   E
Sbjct: 2937 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2990

Query: 223  WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             + S+ D      D  VI  +  +   +Y
Sbjct: 2991 VFTSFRDLTKDLVDERVIELLTHLVHSKY 3019

[184][TOP]
>UniRef100_A2ID01 P349 (Fragment) n=1 Tax=Citrus tristeza virus RepID=A2ID01_9CLOS
          Length = 264

 Score = 60.5 bits (145), Expect = 9e-08
 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI + E++     E    
Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKIGNFSSEICLE 201

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    VP+P KLL++LG+   K+  D   E
Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 255

Query: 223 WYQSWID 203
            + S+ D
Sbjct: 256 LFTSFKD 262

[185][TOP]
>UniRef100_UPI00003FE529 RNA-dependent RNA polymerase n=1 Tax=Potato yellow vein virus
           RepID=UPI00003FE529
          Length = 505

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+ T+A +   YNL D  V+  + SGDDSLI +   L    + +   
Sbjct: 326 QRRTGSPNTWLSNTLTTMAVVLSSYNLDD--VELFLVSGDDSLIFSKYPLDNRTQRM-NV 382

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221
            F +EAKF  N  P+ CSKF+I          +  +P+P++   +L S  V+   ++ W 
Sbjct: 383 DFGMEAKFIENSVPYFCSKFII-----QDRGRIKVIPDPVRFFEKL-SVPVSYQDYENWN 436

Query: 220 -----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
                + S+ D +  F+       V  M + RY   P++   AAL
Sbjct: 437 MIRERFISYKDLMVEFDYDTSCMLVDVMVSKRY-SLPNMASYAAL 480

[186][TOP]
>UniRef100_Q70PI7 Polyprotein n=2 Tax=Potato yellow vein virus RepID=Q70PI7_9CLOS
          Length = 2475

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+ T+A +   YNL D  V+  + SGDDSLI +   L    + +   
Sbjct: 2296 QRRTGSPNTWLSNTLTTMAVVLSSYNLDD--VELFLVSGDDSLIFSKYPLDNRTQRM-NV 2352

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221
             F +EAKF  N  P+ CSKF+I          +  +P+P++   +L S  V+   ++ W 
Sbjct: 2353 DFGMEAKFIENSVPYFCSKFII-----QDRGRIKVIPDPVRFFEKL-SVPVSYQDYENWN 2406

Query: 220  -----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
                 + S+ D +  F+       V  M + RY   P++   AAL
Sbjct: 2407 MIRERFISYKDLMVEFDYDTSCMLVDVMVSKRY-SLPNMASYAAL 2450

[187][TOP]
>UniRef100_B7FAV3 RNA dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
           leafroll-associated virus 10 RepID=B7FAV3_9CLOS
          Length = 515

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPN-VKFVVASGDDSLIGTVEELPRDQEFLFT 398
           QRRTG A T++GNTI+    +C +   ++PN       +GDDSL+   +  P     ++ 
Sbjct: 332 QRRTGAANTWIGNTIIN---MCLLSQSVNPNEFSACCFAGDDSLL-IYKNKPNIAFDVYE 387

Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224
           T F+ + K F     + C KFLI+     G K  + VP+PLKL ++LG ++   D +  E
Sbjct: 388 TKFDFDVKFFDCAAMYFCGKFLIS----DGLKTHV-VPDPLKLFVKLGKERPPEDKVLVE 442

Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
            ++S+ D    F ++ V+  +    A +Y R  + Y
Sbjct: 443 NWRSFYDVTKAFANNTVLEKLVDQFALKYSRSHNAY 478

[188][TOP]
>UniRef100_Q5G7G6 Polymerase (Fragment) n=1 Tax=Mint virus 1 RepID=Q5G7G6_9CLOS
          Length = 459

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G + T++GN++VTL  L   Y + + +  FV  SGDDSL+ +   +    E +   
Sbjct: 250 QRRSGASNTWIGNSVVTLGVLSMYYRVDELSALFV--SGDDSLMYSRSPIRNHAEAICIE 307

Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK---VNADIFD 227
               E KF   + P+ CSKF++      G K    VP+P KL+++LG+ +    + D+F 
Sbjct: 308 T-GFETKFLSPSVPYFCSKFVVH----CGHKTYF-VPDPFKLMVKLGAVRNELTDKDLF- 360

Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA--ALESLGKIFAS--KTLCK 59
           E + S+ D    F+D  V+  +  +   +Y +  +  L A  ++  L   F+S  K   K
Sbjct: 361 EVFTSFRDLTKDFDDERVLVKLNYLLESKYGKVSAFALPALRSIHCLASNFSSFVKLFDK 420

Query: 58  EC 53
            C
Sbjct: 421 SC 422

[189][TOP]
>UniRef100_UPI000019AB7D polyprotein n=2 Tax=Cucurbit yellow stunting disorder virus
            RepID=UPI000019AB7D
          Length = 2482

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VT+  L   YNL D  +  ++ SGDDSLI + + LP     +   
Sbjct: 2303 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2359

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
             F  EAKF  N  P+ CSK++ T         V  VP+  ++  +L +    +D     I
Sbjct: 2360 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2414

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
              E + S+ D +  +        V  +   R+   P +   AAL  +  +FA+    ++ 
Sbjct: 2415 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2472

Query: 52   LFNEKHESNV 23
            LF+E+   N+
Sbjct: 2473 LFDERFSVNI 2482

[190][TOP]
>UniRef100_Q8JUU9 1b (Fragment) n=1 Tax=Cucurbit yellow stunting disorder virus
           RepID=Q8JUU9_9CLOS
          Length = 514

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VT+  L   YNL D  +  ++ SGDDSLI + + LP     +   
Sbjct: 335 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 391

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
            F  EAKF  N  P+ CSK++ T         V  VP+  ++  +L +    +D     I
Sbjct: 392 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 446

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
             E + S+ D +  +        V  +   R+   P +   AAL  +  +FA+    ++ 
Sbjct: 447 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 504

Query: 52  LFNEKHESNV 23
           LF+E+   N+
Sbjct: 505 LFDERFSVNI 514

[191][TOP]
>UniRef100_Q70UT1 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
            RepID=Q70UT1_9CLOS
          Length = 2483

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VT+  L   YNL D  +  ++ SGDDSLI + + LP     +   
Sbjct: 2304 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2360

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
             F  EAKF  N  P+ CSK++ T         V  VP+  ++  +L +    +D     I
Sbjct: 2361 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2415

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
              E + S+ D +  +        V  +   R+   P +   AAL  +  +FA+    ++ 
Sbjct: 2416 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2473

Query: 52   LFNEKHESNV 23
            LF+E+   N+
Sbjct: 2474 LFDERFSVNI 2483

[192][TOP]
>UniRef100_A5JM40 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
            RepID=A5JM40_9CLOS
          Length = 2483

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VT+  L   YNL D  +  ++ SGDDSLI + + LP     +   
Sbjct: 2304 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2360

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
             F  EAKF  N  P+ CSK++ T         V  VP+  ++  +L +    +D     I
Sbjct: 2361 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2415

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
              E + S+ D +  +        V  +   R+   P +   AAL  +  +FA+    ++ 
Sbjct: 2416 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2473

Query: 52   LFNEKHESNV 23
            LF+E+   N+
Sbjct: 2474 LFDERFSVNI 2483

[193][TOP]
>UniRef100_UPI00004A3B9A ORF 1b n=1 Tax=Strawberry pallidosis-associated virus
           RepID=UPI00004A3B9A
          Length = 505

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VTLA +   Y+L D  +  ++ SGDDSLI + ++L      +   
Sbjct: 326 QRRTGSPNTWLSNTLVTLAMILTHYDLDD--IDLLLVSGDDSLIFSRKDLGNKANEI-NR 382

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230
            F +EAKF  N  P+ CSKF+I      G   V+P P      L + I L   +V  D+ 
Sbjct: 383 DFGMEAKFIMNSVPYFCSKFIIED---RGEIKVVPDPVRFFEKLSVPISLQDFQV-GDLL 438

Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            E + S+ D +  ++   VI  V  + + RY
Sbjct: 439 RERFVSFKDLMIGYDSDAVIILVDNLISIRY 469

[194][TOP]
>UniRef100_Q6JGW4 ORF 1a/1b fusion polyprotein n=2 Tax=Strawberry pallidosis-associated
            virus RepID=Q6JGW4_9CLOS
          Length = 2451

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VTLA +   Y+L D  +  ++ SGDDSLI + ++L      +   
Sbjct: 2272 QRRTGSPNTWLSNTLVTLAMILTHYDLDD--IDLLLVSGDDSLIFSRKDLGNKANEI-NR 2328

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230
             F +EAKF  N  P+ CSKF+I      G   V+P P      L + I L   +V  D+ 
Sbjct: 2329 DFGMEAKFIMNSVPYFCSKFIIED---RGEIKVVPDPVRFFEKLSVPISLQDFQV-GDLL 2384

Query: 229  DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             E + S+ D +  ++   VI  V  + + RY
Sbjct: 2385 RERFVSFKDLMIGYDSDAVIILVDNLISIRY 2415

[195][TOP]
>UniRef100_Q001T5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato chlorosis
           virus RepID=Q001T5_9CLOS
          Length = 504

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VT+  +  VY+L D  +   + SGDDSLI + + L    + +   
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDLDD--IDLFLVSGDDSLIFSSKPLKNKTDEI-NR 381

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
            F  EAK   N  P+ CSK++I     S    +  VP+P++   +L         ++  +
Sbjct: 382 DFGFEAKMIENSVPYFCSKYII-----SDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTL 436

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             E ++S+ D +  F+       V A+  +RY
Sbjct: 437 MREKFRSYKDLMKDFDYDTTCVLVDALVCYRY 468

[196][TOP]
>UniRef100_C7B977 ORF 1a/1b fusion protein n=2 Tax=Tomato infectious chlorosis virus
            RepID=C7B977_9CLOS
          Length = 2394

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+ TL  L   Y L D  +  ++ SGDDSLI +  +LP     +   
Sbjct: 2215 QRRTGSPNTWLSNTLATLGMLMSFYKLED--IDLILVSGDDSLIFSRRKLPNVVGEI-NK 2271

Query: 394  LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFD--- 227
             F +EAK   N   + CSK++I     S    +  VP+P++   +L S  V  D  D   
Sbjct: 2272 CFGMEAKLIENSVAYFCSKYII-----SDKGKIKVVPDPVRFFEKL-STPVRLDEIDSKL 2325

Query: 226  ---EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
               E Y S+ D +  ++    +  V A+  +R+
Sbjct: 2326 SLRERYISFKDLMRGYDLDGTVMMVDALVCYRH 2358

[197][TOP]
>UniRef100_A9YRU9 RNA dependent RNA polymerase (Fragment) n=2 Tax=Tomato chlorosis
           virus RepID=A9YRU9_9CLOS
          Length = 504

 Score = 58.5 bits (140), Expect = 4e-07
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VT+  +  VY+L D  +   + SGDDSLI + + L    + +   
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDLDD--IDLFLVSGDDSLIFSSKPLKNKTDEI-NR 381

Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
            F  EAK   N  P+ CSK++I     S    +  VP+P++   +L         ++  +
Sbjct: 382 DFGFEAKMIENSVPYFCSKYII-----SDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTL 436

Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
             E ++S+ D +  F+       V A+  +RY
Sbjct: 437 MREKFRSYKDLMKDFDYDTTCVLVDALVCYRY 468

[198][TOP]
>UniRef100_Q991N2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2
            RepID=Q991N2_9CLOS
          Length = 1980

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG + T+LGNTIV +  L +V +  DPN  FV  SGDDSL+ + + +  D  F  + 
Sbjct: 1859 QRRTGGSNTWLGNTIVNMVSLAYVKD-FDPNT-FVCFSGDDSLVLSRDPIYFD-FFKLSL 1915

Query: 394  LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
               L+ K  P   P+ CSK+LI     +  + +  VP+  KL+ +LG    +  A+   E
Sbjct: 1916 ELGLDVKLTPVATPYFCSKYLI-----NTEERIFIVPDIFKLVTKLGRVFARTKAEGL-E 1969

Query: 223  WYQSWIDTI 197
             ++S+ DTI
Sbjct: 1970 TFESFKDTI 1978

[199][TOP]
>UniRef100_C6FJ53 ORF1a/1b fusion polyprotein n=2 Tax=Lettuce chlorosis virus
            RepID=C6FJ53_9CLOS
          Length = 2495

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
 Frame = -3

Query: 574  QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
            QRRTG   T+L NT+VTL  L   Y+L D  ++ ++ SGDDSLI +  +LP     +   
Sbjct: 2316 QRRTGSPNTWLSNTLVTLGILMSEYDLDD--IELILVSGDDSLIFSKHDLPNVTAEI-NR 2372

Query: 394  LFNLEAKFPHNQ-PFICSKFL 335
             F  EAKF  N  P+ CSKF+
Sbjct: 2373 DFGFEAKFLMNSVPYFCSKFI 2393

[200][TOP]
>UniRef100_B2BZW1 ORF1b n=1 Tax=Bean yellow disorder virus RepID=B2BZW1_9CLOS
          Length = 521

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG   T+L NT+VTL  L   YNL D  ++ ++ SGDDSLI +   LP     +   
Sbjct: 342 QRRTGSPNTWLSNTLVTLGILMTEYNLDD--MELILVSGDDSLIFSKNPLPNVTAEI-NR 398

Query: 394 LFNLEAKFPHNQ-PFICSKFL 335
            F  EAKF  N  P+ CSKF+
Sbjct: 399 DFGFEAKFLMNSVPYFCSKFI 419

[201][TOP]
>UniRef100_Q9JAD3 207K protein n=2 Tax=Soil-borne cereal mosaic virus
            RepID=Q9JAD3_9VIRU
          Length = 1816

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 6/191 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401
            +Q+++G+  TY  NT    A L  + ++     KF++  GDDSLI   ++L   D     
Sbjct: 1630 YQQKSGNCDTYGSNT--WSAALALLESMPLEKAKFMIFGGDDSLILFPKQLCIEDPCRRL 1687

Query: 400  TTLFNLEAK---FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADI 233
             +L+N + K   F HN    C KFL+ +    G+K     P+P+KLL +LG K  V+  +
Sbjct: 1688 ASLWNFDCKLFNFRHNM--FCGKFLLKI----GNKFKF-APDPMKLLTKLGRKDIVDGKL 1740

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGK-IFASKTLCKE 56
              E + S  D  G + D+ ++  +A     RY  R +    A L +L K IF  K L   
Sbjct: 1741 LSEIFVSMGDNYGSYRDYRILEQLAVAVQERY--RTNEDPTAMLITLKKYIFDFKLLAS- 1797

Query: 55   CLFNEKHESNV 23
             LFN   E  V
Sbjct: 1798 -LFNYSGEFEV 1807

[202][TOP]
>UniRef100_Q9J942 194 kDa protein n=2 Tax=Tobacco rattle virus RepID=Q9J942_9VIRU
          Length = 1707

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
            +Q+++GDA TY  N+  TL  L     L       V   GDDSLI      PR  +F+  
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563

Query: 403  ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
                 T +N E K F ++ P  C KFL     L  S     VP+P+K+L +LG K + + 
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618

Query: 238  DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
                E Y S  D+     ++ V+  ++   + RYL +  S++   AL    K F +  LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676

Query: 61   KECLFNEKHESNVKIKPRRV 2
               LF +  E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692

[203][TOP]
>UniRef100_Q9DL34 RNA-dependent RNA polymerase n=2 Tax=Tobacco rattle virus
            RepID=Q9DL34_9VIRU
          Length = 1707

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
            +Q+++GDA TY  N+  TL  L     L       V   GDDSLI      PR  +F+  
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563

Query: 403  ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
                 T +N E K F ++ P  C KFL     L  S     VP+P+K+L +LG K + + 
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618

Query: 238  DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
                E Y S  D+     ++ V+  ++   + RYL +  S++   AL    K F +  LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676

Query: 61   KECLFNEKHESNVKIKPRRV 2
               LF +  E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692

[204][TOP]
>UniRef100_Q8JU32 Putative replicase n=2 Tax=Tobacco rattle virus RepID=Q8JU32_9VIRU
          Length = 1707

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
            +Q+++GDA TY  N+  TL  L     L       V   GDDSLI      PR  +F+  
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563

Query: 403  ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
                 T +N E K F ++ P  C KFL     L  S     VP+P+K+L +LG K + + 
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618

Query: 238  DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
                E Y S  D+     ++ V+  ++   + RYL +  S++   AL    K F +  LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676

Query: 61   KECLFNEKHESNVKIKPRRV 2
               LF +  E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692

[205][TOP]
>UniRef100_Q2XP15 RdRp (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q2XP15_9CLOS
          Length = 475

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++       ++ SGDD LI + E++     +    
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDFLIYSSEKISNFSSQICLE 323

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS---KKVNADIFD 227
           T F  +   P + P+  SKF++     +G+K    VP+P KLL++LG+   K  + ++F 
Sbjct: 324 TGFETKFMSP-SVPYFSSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQIKLTDVELF- 376

Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
           E + S+ D    F D  V+  +  +   +Y
Sbjct: 377 ELFSSFKDMTQDFGDQVVLEKLKLLVEPKY 406

[206][TOP]
>UniRef100_O56250 RNA polymerase n=1 Tax=Tobacco rattle virus RepID=O56250_9VIRU
          Length = 1707

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
            +Q+++GDA TY  N+  TL  L     L       V   GDDSLI      PR  +F+  
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563

Query: 403  ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
                 T +N E K F ++ P  C KFL     L  S     VP+P+K+L +LG K + + 
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618

Query: 238  DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
                E Y S  D+     ++ V+  ++   + RYL +  S++   AL    K F +  LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676

Query: 61   KECLFNEKHESNVKIKPRRV 2
               LF +  E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692

[207][TOP]
>UniRef100_P05080 134 kDa protein n=2 Tax=Tobacco rattle virus RepID=194K_TRVSY
          Length = 1707

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
            +Q+++GDA TY  N+  TL  L     L       V   GDDSLI      PR  +F+  
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563

Query: 403  ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
                 T +N E K F ++ P  C KFL     L  S     VP+P+K+L +LG K + + 
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618

Query: 238  DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
                E Y S  D+     ++ V+  ++   + RYL +  S++   AL    K F +  LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676

Query: 61   KECLFNEKHESNVKIKPRRV 2
               LF +  E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692

[208][TOP]
>UniRef100_Q70BW7 Replicase n=2 Tax=Tobacco rattle virus RepID=Q70BW7_9VIRU
          Length = 1707

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
            +Q+++GDA TY  N+  TL  L     L       V   GDDSLI      PR  +F+  
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563

Query: 403  ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
                 T +N E K F ++ P  C KFL     L  S     VP+P+K+L +LG K + + 
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618

Query: 238  DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
                E Y S  D+     ++ V+  ++   + RYL +  S++   AL    K F +  LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676

Query: 61   KECLFNEKHESNVKIKPRRV 2
               LF +  E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAQV 1692

[209][TOP]
>UniRef100_Q0GK54 RdRp (Fragment) n=1 Tax=Strawberry chlorotic fleck associated virus
           RepID=Q0GK54_9CLOS
          Length = 469

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G + T++GN++VTL  +   Y++     + +  SGDDSLI +  ++       F T
Sbjct: 249 QRRSGGSNTWIGNSLVTLGIIALYYDV--SKFRLLAISGDDSLIYSDNKIAN-----FAT 301

Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG--SKKVNAD 236
              LE+ F       + P+ CSKF++     +G+  V  VP+P KL+++LG  +K V  +
Sbjct: 302 EICLESGFETKFMSPSVPYFCSKFVVQ----TGTNTVF-VPDPYKLMVKLGASNKFVTNE 356

Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
              E Y S+ D    + +  V+  +  +   +Y
Sbjct: 357 GLFEVYTSFRDLTKDYGNQIVLERLKHLVEKKY 389

[210][TOP]
>UniRef100_B2BD48 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
           wilt-associated virus 1 RepID=B2BD48_9CLOS
          Length = 520

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG A T++GNT++ +  L    ++   N   V  +GDDSLI   + +P     ++  
Sbjct: 332 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPGVNFDVYDL 388

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADIFDEW 221
            +  + K F     + C KFLI       S  +  +P+P K+ ++LG ++ V+  I  E 
Sbjct: 389 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKLGKERPVSDKILLEQ 443

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
           +QS+ D    +     I  + +  A++++  P  Y
Sbjct: 444 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 478

[211][TOP]
>UniRef100_A7DYV4 Putative 57-kDa polymerase (Fragment) n=1 Tax=Tobacco rattle virus
           RepID=A7DYV4_9VIRU
          Length = 500

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
           +Q+++GDA TY  N+  TL  L     L       V   GDDSLI      PR  +F+  
Sbjct: 303 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 356

Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
                T +N E K F ++ P  C KFL     L  S     VP+P+K+L +LG K + + 
Sbjct: 357 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 411

Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
               E Y S  D+     ++ V+  ++   + RYL +  S++   AL    K F +  LC
Sbjct: 412 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 469

Query: 61  KECLFNEKHESNVKIKPRRV 2
              LF +  E++ ++ P +V
Sbjct: 470 --TLFRD--ENDKELNPAQV 485

[212][TOP]
>UniRef100_P89202 Replicase small subunit n=1 Tax=Sunn-hemp mosaic virus
            RepID=RDRP_SHMV
          Length = 1629

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELPR----- 419
            +QR++GD  T++GNTI+  ACLC +     P  K   A   GDDS+I     LPR     
Sbjct: 1457 YQRKSGDVTTFIGNTIIIAACLCSIL----PMEKVFKAGFCGDDSII----YLPRNLLYP 1508

Query: 418  DQEFLFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV- 245
            D + +   ++N EAK F     + C ++      L   + +  +P+PLK++ +LG K + 
Sbjct: 1509 DIQSVSNNMWNFEAKLFKKLHGYFCGRY-----XLRNGRYLRLLPDPLKIITKLGCKAIK 1563

Query: 244  NADIFDEWYQSWID 203
            + D  +E+  S  D
Sbjct: 1564 DWDHLEEFRISMFD 1577

[213][TOP]
>UniRef100_B2BD55 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
           wilt-associated virus 1 RepID=B2BD55_9CLOS
          Length = 520

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG A T++GNT++ +  L    ++   N   V  +GDDSLI   + +P     ++  
Sbjct: 332 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGIPGVNFDVYDL 388

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221
            +  + K F     + C KFLI       S  +  +P+P K+ ++ G ++   D I  E 
Sbjct: 389 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 443

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
           +QS+ D    +     I  + +  A++++  P  Y
Sbjct: 444 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 478

[214][TOP]
>UniRef100_Q8QL61 RNA dependent RNA polymerase (Fragment) n=1 Tax=Olive leaf
           yellowing-associated virus RepID=Q8QL61_9CLOS
          Length = 337

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRR+G A T+ GN ++TL  L   Y+    N   V  +GDDS++ +   +    + +   
Sbjct: 110 QRRSGTANTFFGNCMITLMMLSLYYDFR--NFSAVAVAGDDSILFSKTPIVDHSDHMILD 167

Query: 394 LFNLEAKFPHNQP-FICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221
               EAKF  ++P + CS+F+     L  +  +  VP+P K++++LG    +  +   W 
Sbjct: 168 -NGFEAKFLRDKPAYFCSRFI-----LFANDYIYFVPDPYKVIVKLGKPLTDVTVNGLWE 221

Query: 220 -YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
            Y S+ D     N   V+  +A  T  RY
Sbjct: 222 RYISFKDYTKYLNFETVVWHLAIATNIRY 250

[215][TOP]
>UniRef100_B2BD51 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
           wilt-associated virus 1 RepID=B2BD51_9CLOS
          Length = 413

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG A T++GNT++ +  L    ++   N   V  +GDDSLI   + +P     ++  
Sbjct: 225 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPGVNFDVYDL 281

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221
            +  + K F     + C KFLI       S  +  +P+P K+ ++ G ++   D I  E 
Sbjct: 282 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 336

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
           +QS+ D    +     I  + +  A++++  P  Y
Sbjct: 337 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 371

[216][TOP]
>UniRef100_Q8V3A3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
           wilt-associated virus 1 RepID=Q8V3A3_9CLOS
          Length = 525

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
           QRRTG A T++GNT++ +  L    ++   N   V  +GDDSLI   + +PR    ++  
Sbjct: 337 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPRVNFDVYDL 393

Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221
            +  + K F     + C KF     ++  S  +  +P+P K+ ++ G ++   D I  E 
Sbjct: 394 KYEFDVKYFDCASKYFCGKF-----SIENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 448

Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
           +QS  D    +     I  + +  A++++  P  Y
Sbjct: 449 WQSLFDITEAYTSDANISKLVSSFANKWVSSPHAY 483

[217][TOP]
>UniRef100_Q91E49 Replicase large subunit n=2 Tax=Kyuri green mottle mosaic virus
            RepID=Q91E49_9VIRU
          Length = 1670

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407
            +QR++GD  T++GNT +  AC+      M P  K   AS  GDDSLI     L   D + 
Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MVPLSKCFKASFCGDDSLIYMPPNLEYPDIQA 1551

Query: 406  LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239
                ++N EAK F     + C K++I       SK  +  P+PLKL+ +LG+K + +
Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHSKGCIVYPDPLKLISKLGNKSLES 1603

[218][TOP]
>UniRef100_A2ID07 P349 (Fragment) n=1 Tax=Citrus tristeza virus RepID=A2ID07_9CLOS
          Length = 264

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
 Frame = -3

Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
           QRR+G + T++GN++VTL  L   Y++     + ++ SGDDSLI +   +     E    
Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SRFELLLISGDDSLIYSRAPISNFSSEICLE 201

Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
           T F  +   P + P+ CSKF++     +G+K    +P+P +LL++LG+   K+  D   E
Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYQLLVKLGAPQYKLTDDELFE 255

Query: 223 WYQSWID 203
            + S+ D
Sbjct: 256 LFTSFKD 262

[219][TOP]
>UniRef100_Q9JGJ6 59-kDa readthrough protein (Fragment) n=1 Tax=Sorghum chlorotic
           spot virus RepID=Q9JGJ6_9VIRU
          Length = 507

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 3/174 (1%)
 Frame = -3

Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401
           +Q+++G+  TY  NT      L     L     +F++  GDDSLI   EE+   D     
Sbjct: 321 YQQKSGNCDTYGSNTWSAALALLETMPL--EKAEFMIFGGDDSLILFPEEVVVEDPCRRL 378

Query: 400 TTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADIFD 227
            +L+N + K F  N    C KFL+ +    G +     P+P+KL+ +LG K  V+  +  
Sbjct: 379 ASLWNFDCKLFSFNHNLFCGKFLLKI----GDRYRFS-PDPVKLMTKLGRKDIVDGQVLS 433

Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTL 65
           E + S  D    + D  ++  +AA    RY  R +    AAL SL K  +  +L
Sbjct: 434 EIFVSIGDNYKSYRDFRILSALAAAVQERY--RTNEDALAALISLRKYISDFSL 485

[220][TOP]
>UniRef100_D0EWY6 194 kDa readthrough protein n=2 Tax=Tobacco rattle virus
            RepID=D0EWY6_9VIRU
          Length = 1707

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 8/200 (4%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
            +Q+++GDA TY  N+  TL  L     L       V   GDDSLI      P+  +F   
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPLK--KAVMVTYGGDDSLIA----FPKGTQFTDP 1563

Query: 403  ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
                 T +N E K F ++ P  C KFL     L  S     VP+P+K+L +LG K + + 
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618

Query: 238  DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
                E Y S  D+     ++ V+  ++   + RYL +  S++   AL    K F +  LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676

Query: 61   KECLFNEKHESNVKIKPRRV 2
               LF +  E + ++ P +V
Sbjct: 1677 --TLFRD--EKDKELNPSQV 1692

[221][TOP]
>UniRef100_Q9JAD2 207K protein n=2 Tax=Soil-borne cereal mosaic virus
            RepID=Q9JAD2_9VIRU
          Length = 1816

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401
            +Q+++G+  TY  NT    A L  + ++     KF++  GDDS I   ++L   D     
Sbjct: 1630 YQQKSGNCDTYGSNT--WSAALALLESMPLEKAKFMIFGGDDSPILFPKQLCIEDPCRRL 1687

Query: 400  TTLFNLEAK---FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NADI 233
             +L+N + K   F HN    C KFL+ +    G+K     P+P+KLL +LG K + +  +
Sbjct: 1688 ASLWNFDCKLFNFRHNM--FCGKFLLKI----GNKFKF-APDPMKLLTKLGRKDIADGKL 1740

Query: 232  FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGK-IFASKTLCKE 56
              E + S  D  G + D+ ++  +A     RY  R +    A L +L K IF  K L   
Sbjct: 1741 LSEIFVSMGDNYGSYRDYRILEQLAVAVQERY--RTNEDPTAMLITLKKYIFDFKLLAS- 1797

Query: 55   CLFNEKHESNV 23
             LFN   E  V
Sbjct: 1798 -LFNYSGEFEV 1807

[222][TOP]
>UniRef100_Q9DKW5 Replicase large subunit n=1 Tax=Cucumber fruit mottle mosaic virus
            RepID=Q9DKW5_9VIRU
          Length = 1666

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 5/194 (2%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVA-SGDDSLIGTVEELP-RDQEFL 404
            +QR++GD  T++GNT +  AC   V +++  +  F  A  GDDSLI     L   D +  
Sbjct: 1492 YQRKSGDVTTFIGNTFIIAAC---VASMVPLSRSFKAAFCGDDSLIYMPPNLEYNDIQST 1548

Query: 403  FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA-DIF 230
               ++N EAK +     + C K++I       +   +  P+PLKL+ +LG+K + + D  
Sbjct: 1549 ANLVWNFEAKLYKKKYGYFCGKYVI-----HHANGCIVYPDPLKLISKLGNKSLESYDHL 1603

Query: 229  DEWYQSWIDTI-GVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
            +E+  S +D    +FN  +      A+  H Y   PS+         G  FA  +LCK  
Sbjct: 1604 EEFRISLMDVAKPLFNAAYFHLLDDAI--HEYF--PSVG--------GSTFAISSLCK-Y 1650

Query: 52   LFNEKHESNVKIKP 11
            L N++   ++ IKP
Sbjct: 1651 LSNKQLFGSLFIKP 1664

[223][TOP]
>UniRef100_Q911R4 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus
            RepID=Q911R4_9VIRU
          Length = 1670

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407
            +QR++GD  T++GNT +  AC+      M P  +   AS  GDDSLI     L   D + 
Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MIPLGRCFKASFCGDDSLIYMPPNLEYPDIQA 1551

Query: 406  LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239
                ++N EAK F     + C K++I       +K  +  P+PLKL+ +LG+K V +
Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHAKGCIVYPDPLKLISKLGNKSVES 1603

[224][TOP]
>UniRef100_Q5W5U1 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus
            RepID=Q5W5U1_9VIRU
          Length = 1670

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
 Frame = -3

Query: 577  FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407
            +QR++GD  T++GNT +  AC+      M P  +   AS  GDDSLI     L   D + 
Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MIPLGRCFKASFCGDDSLIYMPPNLEYPDIQA 1551

Query: 406  LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239
                ++N EAK F     + C K++I       +K  +  P+PLKL+ +LG+K V +
Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHAKGCIVYPDPLKLISKLGNKSVES 1603