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[1][TOP]
>UniRef100_P03593 RNA-directed RNA polymerase 2A n=1 Tax=Alfalfa mosaic virus (strain
425 / isolate Leiden) RepID=ORF2A_AMVLE
Length = 790
Score = 381 bits (979), Expect = e-104
Identities = 185/192 (96%), Positives = 187/192 (97%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDALTYLGNTIVTLACLCHVY+LMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT
Sbjct: 585 FQRRTGDALTYLGNTIVTLACLCHVYDLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 644
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFNLEAKFPHNQPFICSKFLITMPT SG KVVLP+PNPLKLLIRLGSKKVNADIFDEWY
Sbjct: 645 TLFNLEAKFPHNQPFICSKFLITMPTTSGGKVVLPIPNPLKLLIRLGSKKVNADIFDEWY 704
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
QSWID IG FNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFA KTLCKECLFNEK
Sbjct: 705 QSWIDIIGGFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFAGKTLCKECLFNEK 764
Query: 37 HESNVKIKPRRV 2
HESNVKIKPRRV
Sbjct: 765 HESNVKIKPRRV 776
[2][TOP]
>UniRef100_Q91NQ3 Polymerase P2 n=1 Tax=Prune dwarf virus RepID=Q91NQ3_9BROM
Length = 788
Score = 234 bits (597), Expect = 4e-60
Identities = 113/190 (59%), Positives = 141/190 (74%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRR GDA TYLGNTIVTLA LC+VY+L NV VVASGDDSLIG+ EL R E LF+
Sbjct: 564 YQRRAGDACTYLGNTIVTLAALCYVYDLRSSNVAMVVASGDDSLIGSYSELDRSFEHLFS 623
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+TMPT G K V+ VPNP KLLI+LG K + D FD+W+
Sbjct: 624 TLFNFEAKFPHNQPFICSKFLLTMPTKGGGKQVVAVPNPAKLLIKLGVKSMTVDKFDDWF 683
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
QSW+D I F+D+++I V +MT++RY+RRPS +L +A+ SL +FA+K CK+ LF
Sbjct: 684 QSWLDLIHYFDDYYLIEVVCSMTSYRYIRRPSQFLVSAISSLKSLFANKKKCKDFLFPGL 743
Query: 37 HESNVKIKPR 8
+ N + R
Sbjct: 744 RDKNPDLSMR 753
[3][TOP]
>UniRef100_Q5VI74 RNA-dependent RNA polymerase n=1 Tax=Fragaria chiloensis latent virus
RepID=Q5VI74_9BROM
Length = 786
Score = 229 bits (584), Expect = 1e-58
Identities = 112/177 (63%), Positives = 136/177 (76%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA+TYLGNT+VTLA L +VY+L DPNV VVASGDDSLIG+ L R +E L +
Sbjct: 593 FQRRTGDAVTYLGNTVVTLAVLSYVYDLSDPNVLMVVASGDDSLIGSYRPLDRSREHLCS 652
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+TMPT SG + V+ VPNPLKLLI+LG + + D FD WY
Sbjct: 653 TLFNFEAKFPHNQPFICSKFLLTMPTKSGGRRVVAVPNPLKLLIKLGIRNLQEDQFDAWY 712
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLF 47
SWID I FND H+I VA M ++RYLR+PS++L+ A+ S +FA+KT + LF
Sbjct: 713 TSWIDLIHYFNDEHLISVVAEMCSYRYLRKPSMFLKPAMCSFNNVFANKTKLMKFLF 769
[4][TOP]
>UniRef100_Q91NQ0 Polymerase p2 n=1 Tax=Prunus necrotic ringspot virus
RepID=Q91NQ0_9BROM
Length = 799
Score = 213 bits (541), Expect = 1e-53
Identities = 101/177 (57%), Positives = 131/177 (74%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNTI+TL+ L ++Y+L+DPNV FV+ASGDDSLIG+++ L R +EF F
Sbjct: 578 YQRRTGDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKPLDRSEEFKFV 637
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPF+CSKFL +PT+SG K VL VPN LKL I+LG K + +FD WY
Sbjct: 638 TLFNFEAKFPHNQPFVCSKFLCLLPTVSGGKKVLAVPNALKLNIKLGVKDLAPCVFDAWY 697
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLF 47
SW+D I F+++ V+ + +HRYLRR + Y E A+ + IF+SK C + LF
Sbjct: 698 NSWLDLIWYFDNYLVVSTMKDYISHRYLRRQTCYQEGAMLAYRTIFSSKEKCLKSLF 754
[5][TOP]
>UniRef100_Q9QGG9 Putative polymerase n=1 Tax=Apple mosaic virus RepID=Q9QGG9_9BROM
Length = 875
Score = 207 bits (527), Expect = 5e-52
Identities = 97/182 (53%), Positives = 130/182 (71%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+Q RTGDA TYL NTI+TL+ L ++Y+L+DPN+ FV+ASGDDSLIG+ L RD EF FT
Sbjct: 630 YQPRTGDACTYLANTIITLSALAYMYDLLDPNITFVIASGDDSLIGSRVPLDRDDEFKFT 689
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPF+CSKFL +PT G K V+ VPN LKL I+LG K ++ FD WY
Sbjct: 690 TLFNFEAKFPHNQPFVCSKFLCLVPTTDGGKKVVAVPNALKLNIKLGVKDLSPLTFDSWY 749
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
+SW+D I F+++ ++ + +HRYLR+P+++ E A+ + G IFA+K C +F
Sbjct: 750 ESWLDLIWYFDNYLIVSTMKDYLSHRYLRKPTMFQEGAMLAYGSIFANKEKCLRSVFGIS 809
Query: 37 HE 32
E
Sbjct: 810 SE 811
[6][TOP]
>UniRef100_O41891 Putative polymerase (Fragment) n=1 Tax=Citrus variegation virus
RepID=O41891_9BROM
Length = 338
Score = 207 bits (527), Expect = 5e-52
Identities = 105/187 (56%), Positives = 129/187 (68%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+L DPN+ FV+ASGDDSLIG+V ELPR E LFT
Sbjct: 80 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFVIASGDDSLIGSVNELPRGSEDLFT 139
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
SW+D I F D V VA++ A+R RR S+YL +AL SL FA+K K ++
Sbjct: 200 TSWLDVIYYFRDSRVCEKVASLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYHLT 259
Query: 37 HESNVKI 17
+ +KI
Sbjct: 260 EQECLKI 266
[7][TOP]
>UniRef100_A5JVP5 Putative viral polymerase n=1 Tax=Citrus variegation virus
RepID=A5JVP5_9BROM
Length = 790
Score = 207 bits (527), Expect = 5e-52
Identities = 105/187 (56%), Positives = 129/187 (68%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+L DPN+ FV+ASGDDSLIG+V ELPR E LFT
Sbjct: 491 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFVIASGDDSLIGSVNELPRGSEDLFT 550
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 551 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 610
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
SW+D I F D V VA++ A+R RR S+YL +AL SL FA+K K ++
Sbjct: 611 TSWLDVIYYFRDSRVCEKVASLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYHLT 670
Query: 37 HESNVKI 17
+ +KI
Sbjct: 671 EQECLKI 677
[8][TOP]
>UniRef100_Q9IMN3 Polymerase 2a (Fragment) n=1 Tax=Hydrangea mosaic virus
RepID=Q9IMN3_9BROM
Length = 338
Score = 206 bits (524), Expect = 1e-51
Identities = 104/187 (55%), Positives = 129/187 (68%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+L DPN+ F++ASGDDSLIG+V ELPR E LFT
Sbjct: 80 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 139
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
QSW+D I F D V VA + A+R RR S+YL +AL SL FA+ K ++
Sbjct: 200 QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 259
Query: 37 HESNVKI 17
+ ++KI
Sbjct: 260 EQESLKI 266
[9][TOP]
>UniRef100_Q88167 Polymerase n=1 Tax=Elm mottle virus RepID=Q88167_9BROM
Length = 789
Score = 206 bits (524), Expect = 1e-51
Identities = 104/187 (55%), Positives = 129/187 (68%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+L DPN+ F++ASGDDSLIG+V ELPR E LFT
Sbjct: 490 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 549
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 550 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 609
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
QSW+D I F D V VA + A+R RR S+YL +AL SL FA+ K ++
Sbjct: 610 QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 669
Query: 37 HESNVKI 17
+ ++KI
Sbjct: 670 EQESLKI 676
[10][TOP]
>UniRef100_O11878 Polymerase (Fragment) n=1 Tax=Elm mottle virus RepID=O11878_9BROM
Length = 338
Score = 206 bits (524), Expect = 1e-51
Identities = 104/187 (55%), Positives = 129/187 (68%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+L DPN+ F++ASGDDSLIG+V ELPR E LFT
Sbjct: 80 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 139
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
QSW+D I F D V VA + A+R RR S+YL +AL SL FA+ K ++
Sbjct: 200 QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 259
Query: 37 HESNVKI 17
+ ++KI
Sbjct: 260 EQESLKI 266
[11][TOP]
>UniRef100_O41889 Putative polymerase (Fragment) n=1 Tax=Asparagus virus 2
RepID=O41889_9BROM
Length = 338
Score = 204 bits (518), Expect = 5e-51
Identities = 104/187 (55%), Positives = 129/187 (68%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+L +PN+ FV+ASGDDSLIG+V+ELPR E LFT
Sbjct: 80 FQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVDELPRGPEDLFT 139
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 199
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
SW+D I F D V VA++ A R RR S+YL +AL SL FA+K K ++
Sbjct: 200 TSWLDVIYYFRDSRVCEKVASLCAFRQTRRSSMYLLSALLSLPSRFANKKKFKWLCYHLT 259
Query: 37 HESNVKI 17
+ +KI
Sbjct: 260 EQECLKI 266
[12][TOP]
>UniRef100_B8RCA4 Polymerase n=1 Tax=Asparagus virus 2 RepID=B8RCA4_9BROM
Length = 790
Score = 204 bits (518), Expect = 5e-51
Identities = 104/187 (55%), Positives = 129/187 (68%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+L +PN+ FV+ASGDDSLIG+V+ELPR E LFT
Sbjct: 491 FQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVDELPRGPEDLFT 550
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 551 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 610
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
SW+D I F D V VA++ A R RR S+YL +AL SL FA+K K ++
Sbjct: 611 TSWLDVIYYFRDSRVCEKVASLCAFRQTRRSSMYLLSALLSLPSRFANKKKFKWLCYHLT 670
Query: 37 HESNVKI 17
+ +KI
Sbjct: 671 EQECLKI 677
[13][TOP]
>UniRef100_Q66107 Polymerase n=1 Tax=Citrus leaf rugose virus RepID=Q66107_9BROM
Length = 832
Score = 202 bits (514), Expect = 2e-50
Identities = 106/193 (54%), Positives = 129/193 (66%), Gaps = 1/193 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+L DP + FV+ASGDDSLIG+VEELPR E LFT
Sbjct: 495 FQRRTGDANTYLGNTLVTLICLARVYDLCDPKITFVIASGDDSLIGSVEELPRAPEHLFT 554
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFN EAKFPHNQPFICSK L+++ + G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 555 SLFNFEAKFPHNQPFICSKILVSVDLVCGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 614
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCK-ECLFNE 41
SW+D I F D V VA + A+R RR S+YL +AL SL FA+K K C
Sbjct: 615 TSWLDVIYYFRDSRVCEKVADLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKLLCYHLT 674
Query: 40 KHESNVKIKPRRV 2
+ E K KP +
Sbjct: 675 EEECLRKAKPSSI 687
[14][TOP]
>UniRef100_Q99HR0 Putative polymerase p2 n=1 Tax=Tulare apple mosaic virus
RepID=Q99HR0_9BROM
Length = 809
Score = 199 bits (506), Expect = 1e-49
Identities = 101/186 (54%), Positives = 124/186 (66%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL CL VY+ DP + FV+ASG DSL+G+VEELPR E LFT
Sbjct: 490 FQRRTGDANTYLGNTLVTLMCLARVYDSCDPKITFVIASGADSLLGSVEELPRTPEHLFT 549
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y
Sbjct: 550 SLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 609
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
SW+D I F D V VA + A+R RR S+YL +AL SL FA+ K +N
Sbjct: 610 NSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANLKKFKRLCYNLT 669
Query: 37 HESNVK 20
E +K
Sbjct: 670 EEECLK 675
[15][TOP]
>UniRef100_B7T2J4 Polymerase n=1 Tax=Lilac ring mottle virus RepID=B7T2J4_9BROM
Length = 791
Score = 195 bits (495), Expect = 2e-48
Identities = 99/192 (51%), Positives = 128/192 (66%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA+TYLGNTIVTL CL VY+L ++ FVVASGDDSLIG++ ELPRD E LF
Sbjct: 477 YQRRTGDAVTYLGNTIVTLICLARVYDLNSSDITFVVASGDDSLIGSLHELPRDSESLFV 536
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFN EAKFPHNQPFICSKFL+ + G + V+ VPNP KLLIR+G K E +
Sbjct: 537 SLFNFEAKFPHNQPFICSKFLVAVDVEGGRREVISVPNPAKLLIRMGKKDCQYQDLGELF 596
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38
SW+D + F D V R VA + A+R R PS+YLEAAL +L F+++ ++
Sbjct: 597 ISWLDVVKYFRDSEVCRKVADLCAYRQKRGPSMYLEAALLALPVCFSNRKKFLNICYSLT 656
Query: 37 HESNVKIKPRRV 2
++ +K R+
Sbjct: 657 NDDCLKYSDLRI 668
[16][TOP]
>UniRef100_B9VV82 p2 protein (Fragment) n=1 Tax=Bacopa chlorosis virus
RepID=B9VV82_9BROM
Length = 457
Score = 189 bits (479), Expect = 2e-46
Identities = 104/204 (50%), Positives = 131/204 (64%), Gaps = 12/204 (5%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL+ L +VY+L DPNV FV ASGDDSLIGT+E LPRD+E L
Sbjct: 177 FQRRTGDACTYLGNTLVTLSVLSYVYDLSDPNVLFVAASGDDSLIGTLEPLPRDKEDLCV 236
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFNLE KFPHNQPF+CSKFL+ + GS+ VL VPNPLKLL +LG K + + D+ Y
Sbjct: 237 SLFNLETKFPHNQPFLCSKFLLVVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDVY 296
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK--------- 71
QS D + VF D + R VA + R R+ L+LE+AL SL + A++
Sbjct: 297 QSLCDIVWVFEDADICRRVAELAEFRQFKGRKQCLFLESALLSLPSLVANRLKFIRRTIN 356
Query: 70 -TLCKECLFNEKHESNVKIKPRRV 2
K C+ NE + + RV
Sbjct: 357 LESSKACIRNEVYSDLIACNVSRV 380
[17][TOP]
>UniRef100_Q5XPM6 RdRp n=1 Tax=Strawberry necrotic shock virus RepID=Q5XPM6_9BROM
Length = 803
Score = 184 bits (466), Expect = 6e-45
Identities = 100/197 (50%), Positives = 128/197 (64%), Gaps = 12/197 (6%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNT+VTL+ L +VY+L PN+ FV ASGDDSLIG+ + LPRD+E L
Sbjct: 518 YQRRTGDACTYLGNTLVTLSVLSYVYDLSSPNILFVAASGDDSLIGSTQPLPRDKEDLCV 577
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFN E KFPHNQPFICSKFL+ + GSK VL VPNPLKLL +LG K + + D++Y
Sbjct: 578 SLFNFETKFPHNQPFICSKFLLVVECDDGSKEVLAVPNPLKLLQKLGPKTLQVTMIDDYY 637
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK--------- 71
QS D + VF D + R VA + R RR L+LE+AL SL + A++
Sbjct: 638 QSLCDILWVFEDADICRRVAELAEFRCFKGRRHCLFLESALLSLPSLVANRLKFLRRTIN 697
Query: 70 -TLCKECLFNEKHESNV 23
K C+ N+ H + V
Sbjct: 698 LESSKACIRNDVHSNLV 714
[18][TOP]
>UniRef100_P89678 Putative viral polymerase n=1 Tax=Tobacco streak virus
RepID=P89678_9BROM
Length = 800
Score = 184 bits (466), Expect = 6e-45
Identities = 93/171 (54%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG++E LPR++E L
Sbjct: 520 YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSIEPLPREKEDLCV 579
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFN E KFPHNQPFICSKFL+ + GS+ VL VPNPLKLL +LG K + + D++Y
Sbjct: 580 SLFNFETKFPHNQPFICSKFLLVVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDYY 639
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLR--RPSLYLEAALESLGKIFASK 71
QS D + VFND V R A + +R + + L+LE+AL SL + A++
Sbjct: 640 QSLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANR 690
[19][TOP]
>UniRef100_B7TX63 2a protein n=1 Tax=Tobacco streak virus RepID=B7TX63_9BROM
Length = 795
Score = 183 bits (465), Expect = 7e-45
Identities = 93/171 (54%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG++E LPR++E L
Sbjct: 515 YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSIEPLPREKEDLCV 574
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFN E KFPHNQPFICSKFL+ + GS+ VL VPNPLKLL +LG K + + D++Y
Sbjct: 575 SLFNFETKFPHNQPFICSKFLLIVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDYY 634
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLR--RPSLYLEAALESLGKIFASK 71
QS D + VFND V R A + +R + + L+LE+AL SL + A++
Sbjct: 635 QSLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANR 685
[20][TOP]
>UniRef100_Q6JE41 P2 protein n=1 Tax=Humulus japonicus latent virus RepID=Q6JE41_9BROM
Length = 853
Score = 182 bits (463), Expect = 1e-44
Identities = 98/184 (53%), Positives = 126/184 (68%), Gaps = 1/184 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TYLGNT+VTL LCHVY+L D NV VVASGDD LIG+ E+L + +E+L +
Sbjct: 644 FQRRTGDACTYLGNTLVTLCVLCHVYDLGDANVLSVVASGDDCLIGSYEKLDQSREYLCS 703
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
TLFN EAKFP+NQPFICSKFLI + G + V+ VPNP+KLLI+LGS K+N + FDEW+
Sbjct: 704 TLFNFEAKFPYNQPFICSKFLIIAEMMDGREEVIAVPNPIKLLIKLGS-KLNPEDFDEWF 762
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFAS-KTLCKECLFNE 41
+W D I F + H++ + + R R + L ALES +F S K + +E E
Sbjct: 763 LAWRDHIHYFQNAHIVDQIVDLVEVRTGVRNTQCLRLALESFPHVFRSKKAVMREFFCME 822
Query: 40 KHES 29
+ ES
Sbjct: 823 EIES 826
[21][TOP]
>UniRef100_Q2QF34 p2 protein n=1 Tax=Blackberry chlorotic ringspot virus
RepID=Q2QF34_9BROM
Length = 804
Score = 182 bits (463), Expect = 1e-44
Identities = 94/171 (54%), Positives = 122/171 (71%), Gaps = 2/171 (1%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG+++ LPRD+E L
Sbjct: 519 YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNISFVAASGDDSLIGSLQPLPRDKEDLCV 578
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFN E KFPHNQPFICSKFL+ + G+K VL VPNPLKLL +LG K + + D++Y
Sbjct: 579 SLFNFETKFPHNQPFICSKFLLVVECDDGTKEVLAVPNPLKLLQKLGPKTMQVTMIDDYY 638
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71
QS D + VF D V R VA + R R+ L+LE+AL SL + A++
Sbjct: 639 QSLCDILWVFEDADVCRRVAELAEFRAFKGRKKCLFLESALLSLPSLVANR 689
[22][TOP]
>UniRef100_O57162 Putative polymerase n=1 Tax=Spinach latent virus RepID=O57162_9BROM
Length = 797
Score = 177 bits (450), Expect = 4e-43
Identities = 95/187 (50%), Positives = 123/187 (65%), Gaps = 1/187 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQ-EFLF 401
+QRRTGDA TYLGNT+VTL CL VY+L +PN+ FV+ASGDDSLIG+VEELPR EF++
Sbjct: 490 YQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVEELPRGPGEFIY 549
Query: 400 TTLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+ N EAKFPHNQPFI K L+++ G + V+ VPNP KLLI +G + D+
Sbjct: 550 NPV-NFEAKFPHNQPFIWLKVLVSVDLEDGGREVIAVPNPAKLLIGMGRRDCQYQALDDL 608
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41
YQSW+D I F D V VA + A+R RR S+YL +AL SL FA+K K +
Sbjct: 609 YQSWLDVIYYFRDARVCEKVADLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYRL 668
Query: 40 KHESNVK 20
+ + +K
Sbjct: 669 REQGCLK 675
[23][TOP]
>UniRef100_Q6RK13 P2 protein n=1 Tax=Parietaria mottle virus RepID=Q6RK13_9BROM
Length = 805
Score = 177 bits (449), Expect = 5e-43
Identities = 88/171 (51%), Positives = 122/171 (71%), Gaps = 2/171 (1%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNT+VTL+ L +VY+L P++ FV ASGDDSLIG++ LPRD+E L
Sbjct: 526 YQRRTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 585
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFNLE KFPHNQPF+CSKFL+ + G++ VL VPNPLK+L ++G K + + D++Y
Sbjct: 586 SLFNLETKFPHNQPFLCSKFLLVVECDDGTEEVLAVPNPLKILQKMGPKNLQVTVLDDYY 645
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71
QS D + VF D + R VA + +R +R ++LE+AL SL + A++
Sbjct: 646 QSLCDILWVFEDADICRRVAQLAEYRQFKGKRSCVFLESALLSLPSLVANR 696
[24][TOP]
>UniRef100_C7T304 p2 protein n=1 Tax=Parietaria mottle virus RepID=C7T304_9BROM
Length = 806
Score = 176 bits (447), Expect = 9e-43
Identities = 87/171 (50%), Positives = 122/171 (71%), Gaps = 2/171 (1%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNT+VTL+ L +VY+L P++ FV ASGDDSLIG++ LPRD+E L
Sbjct: 526 YQRRTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 585
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218
+LFNLE KFPHNQPF+CSKFL+ + G++ VL VPNPLK+L ++G K + + D++Y
Sbjct: 586 SLFNLETKFPHNQPFLCSKFLLVVECDDGTEEVLAVPNPLKILQKMGPKNLQVTVLDDYY 645
Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71
QS D + VF D + R VA + +R ++ ++LE+AL SL + A++
Sbjct: 646 QSLCDILWVFEDADICRRVAQLAEYRQFKGKKKCIFLESALLSLPSLVANR 696
[25][TOP]
>UniRef100_Q997A3 Putative polymerase p2 n=1 Tax=American plum line pattern virus
RepID=Q997A3_9BROM
Length = 740
Score = 164 bits (416), Expect = 3e-39
Identities = 86/184 (46%), Positives = 117/184 (63%), Gaps = 1/184 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEEL-PRDQEFLF 401
+QRRTGDA TYLGNT+VTL L ++Y+L PNV VVASGDDSLIGT++ L PRD+E
Sbjct: 534 YQRRTGDACTYLGNTLVTLCTLSYIYDLTSPNVGLVVASGDDSLIGTIKHLLPRDKEQFC 593
Query: 400 TTLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+TLFN E KFPHNQPFICSKFL+ +G + V P+P KLLIR+G K + F+ W
Sbjct: 594 STLFNFETKFPHNQPFICSKFLVLDQLENGGERVNAYPDPYKLLIRVGVKFMTNTKFESW 653
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41
+S+ D+ ++ + V M +RY+R +L AL L + S+ + LF +
Sbjct: 654 AESFFDSFSCYSTIESVSKVVEMAGYRYIRNSPKFLLPALHHLKYLCRSRDALRAGLFGK 713
Query: 40 KHES 29
++ S
Sbjct: 714 EYSS 717
[26][TOP]
>UniRef100_Q6PNM5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine angular
mosaic virus RepID=Q6PNM5_9BROM
Length = 127
Score = 107 bits (267), Expect = 7e-22
Identities = 52/74 (70%), Positives = 58/74 (78%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNTIVTL L +VY+L P V FV ASGDDSLIG+ EELPR +E L
Sbjct: 54 YQRRTGDACTYLGNTIVTLCVLSYVYDLSSPKVLFVTASGDDSLIGSTEELPRGKEELCV 113
Query: 397 TLFNLEAKFPHNQP 356
+LFN E KFPHNQP
Sbjct: 114 SLFNFETKFPHNQP 127
[27][TOP]
>UniRef100_A7DWF6 RNA dependent RNA polymerase (Fragment) n=1 Tax=Spinach latent
virus RepID=A7DWF6_9BROM
Length = 111
Score = 100 bits (248), Expect = 1e-19
Identities = 47/64 (73%), Positives = 55/64 (85%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QR+TGDA TYLGNT+VTL CL VY+L +PN+ FV+ASGDDSLIG+VEELPR E LFT
Sbjct: 47 YQRKTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVEELPRGPEDLFT 106
Query: 397 TLFN 386
TLFN
Sbjct: 107 TLFN 110
[28][TOP]
>UniRef100_A7DWF5 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prunus necrotic
ringspot virus RepID=A7DWF5_9BROM
Length = 111
Score = 96.3 bits (238), Expect = 2e-18
Identities = 43/64 (67%), Positives = 55/64 (85%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNTI+TL+ L ++Y+L+DPNV FV+ASGDDSLIG+++ L R +EF F
Sbjct: 47 YQRRTGDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKPLDRSEEFKFV 106
Query: 397 TLFN 386
TLFN
Sbjct: 107 TLFN 110
[29][TOP]
>UniRef100_A7DWF2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Apple mosaic virus
RepID=A7DWF2_9BROM
Length = 111
Score = 95.9 bits (237), Expect = 2e-18
Identities = 44/64 (68%), Positives = 54/64 (84%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNTI+TL+ L ++Y+L+DPN+ FV+ASGDDSLIG+ L RD EF FT
Sbjct: 47 YQRRTGDACTYLGNTIITLSALAYMYDLLDPNITFVIASGDDSLIGSRVPLDRDDEFKFT 106
Query: 397 TLFN 386
TLFN
Sbjct: 107 TLFN 110
[30][TOP]
>UniRef100_A7DWF4 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus
RepID=A7DWF4_9BROM
Length = 110
Score = 92.0 bits (227), Expect = 3e-17
Identities = 46/64 (71%), Positives = 51/64 (79%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTGDA TYLGNTIVTLA LC+VY+L NV VVASGDDSLIG+ EL R E LF+
Sbjct: 46 YQRRTGDACTYLGNTIVTLAALCYVYDLQSSNVAMVVASGDDSLIGSYSELDRRFEHLFS 105
Query: 397 TLFN 386
TLFN
Sbjct: 106 TLFN 109
[31][TOP]
>UniRef100_A7DWF7 RNA dependent RNA polymerase (Fragment) n=1 Tax=Tobacco streak
virus RepID=A7DWF7_9BROM
Length = 111
Score = 87.0 bits (214), Expect = 9e-16
Identities = 41/64 (64%), Positives = 53/64 (82%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QR+TGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG+ E LPR++E L
Sbjct: 47 YQRKTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSREPLPREKEDLCV 106
Query: 397 TLFN 386
+LFN
Sbjct: 107 SLFN 110
[32][TOP]
>UniRef100_A7DWF3 RNA dependent RNA polymerase (Fragment) n=1 Tax=Parietaria mottle
virus RepID=A7DWF3_9BROM
Length = 111
Score = 85.5 bits (210), Expect = 3e-15
Identities = 41/65 (63%), Positives = 52/65 (80%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QR TGDA TYLGNT+VTL+ L +VY+L P++ FV ASGDDSLIG++ LPRD+E L
Sbjct: 47 YQRLTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 106
Query: 397 TLFNL 383
+LFNL
Sbjct: 107 SLFNL 111
[33][TOP]
>UniRef100_P29035 RNA-directed RNA polymerase 2A n=2 Tax=Tomato aspermy virus
RepID=ORF2A_TAV
Length = 828
Score = 84.0 bits (206), Expect = 8e-15
Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 6/188 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT++ Y+ ++ SGDDSL G + P LFT
Sbjct: 576 FQRRTGDAFTYFGNTLVTMSMFAWCYD--TSQFDKLIFSGDDSL-GFSIKAPVGDPSLFT 632
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDE- 224
+LFN+EAK + P+ICSKFL+T VP+PL+ + RLGSKK+ D D
Sbjct: 633 SLFNMEAKVMEPSVPYICSKFLLT----DDFGNTFSVPDPLREIQRLGSKKIPLDEDDRS 688
Query: 223 ---WYQSWIDTIGVFND-HHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKE 56
+ S++D + N + ++ R+ + L + K A+ KE
Sbjct: 689 LHAHFMSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTANFNAYKE 748
Query: 55 CLFNEKHE 32
++EK +
Sbjct: 749 LYYSEKQQ 756
[34][TOP]
>UniRef100_Q8JW07 2a protein n=1 Tax=Spring beauty latent virus RepID=Q8JW07_9BROM
Length = 831
Score = 82.8 bits (203), Expect = 2e-14
Identities = 50/115 (43%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + +L + F SGDDSLI + ++L D E +F+
Sbjct: 542 FQRRTGDAFTYFGNTLVTMAMIAYTVDLSEATAIF---SGDDSLIISDKKLELDTE-VFS 597
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
+LFN+E K + P+ICSKFL+ T +G+ ++ +P+PL+ L R+ +K+ D
Sbjct: 598 SLFNMEIKVMDPSVPYICSKFLV--ETENGN--LVSIPDPLRELQRMAKRKILKD 648
[35][TOP]
>UniRef100_Q9JFY6 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9JFY6_9BROM
Length = 857
Score = 82.4 bits (202), Expect = 2e-14
Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT
Sbjct: 571 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSKLPPVGDPSKFT 627
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 628 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 683
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 684 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 742
Query: 58 ECLFNEKHE 32
E F+++ +
Sbjct: 743 ELYFSDRRQ 751
[36][TOP]
>UniRef100_P28727 RNA-directed RNA polymerase 2A n=1 Tax=Peanut stunt virus (strain J)
RepID=ORF2A_PSVJ
Length = 834
Score = 82.4 bits (202), Expect = 2e-14
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 8/188 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT
Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE
Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671
Query: 220 Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62
Y S++D + HH + + +Y ++ A+L K + ++
Sbjct: 672 YLKAHFMSFVDRLKFLPRMTHHTVAQLITFYEMKY-KKSGAECHASLGGFAKYSTNFSIY 730
Query: 61 KECLFNEK 38
KE +++
Sbjct: 731 KELYISDQ 738
[37][TOP]
>UniRef100_C0MNB3 2a protein n=1 Tax=Gayfeather mild mottle virus RepID=C0MNB3_9BROM
Length = 777
Score = 81.6 bits (200), Expect = 4e-14
Identities = 52/112 (46%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A C Y+ ++ SGDDSL + P FT
Sbjct: 573 FQRRTGDAFTYFGNTLVTMALFCWCYD--TEQFDRMLFSGDDSLAFS-SIAPVGDPSKFT 629
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV 245
TLFN+EAK + P+ICSKFL+T VP+PL+ + RLGSKK+
Sbjct: 630 TLFNMEAKVMEPSVPYICSKFLLT----DEFGQTFSVPDPLREIQRLGSKKI 677
[38][TOP]
>UniRef100_A7VN22 2a protein n=1 Tax=Peanut stunt virus RepID=A7VN22_9BROM
Length = 834
Score = 81.6 bits (200), Expect = 4e-14
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT
Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE
Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671
Query: 220 Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62
Y S++D + HH + + +Y ++ A L K + ++
Sbjct: 672 YLKAHFMSFVDRLKFLPRMTHHTVAQLITFYEMKY-KKSGAECHAMLGGFAKYSTNFSIY 730
Query: 61 KECLFNEK 38
KE +++
Sbjct: 731 KELYISDQ 738
[39][TOP]
>UniRef100_Q66145 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
MB-8) RepID=ORF2A_CMVMB
Length = 857
Score = 81.3 bits (199), Expect = 5e-14
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++H+
Sbjct: 744 ELYYSDRHQ 752
[40][TOP]
>UniRef100_Q0PP54 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
RepID=Q0PP54_9BROM
Length = 858
Score = 80.9 bits (198), Expect = 7e-14
Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ S VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLSDEFGS----TFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[41][TOP]
>UniRef100_C8KH76 2a protein n=1 Tax=Melandrium yellow fleck virus RepID=C8KH76_9BROM
Length = 828
Score = 80.9 bits (198), Expect = 7e-14
Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A + + +++ P + + SGDDSL+ + + P +F
Sbjct: 543 FQRRTGDAFTYFGNTIVTMAMMAYTFDMNLP--ELAIFSGDDSLL-VLNDKPSIDTDIFQ 599
Query: 397 TLFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
LFN+E K + P++CSKFL + T GS V+ VP+PL+ + R+ +K+ D
Sbjct: 600 RLFNMEVKIMEPSVPYVCSKFL--LETELGS--VVSVPDPLREIQRMSKRKILKD 650
[42][TOP]
>UniRef100_B6V8E8 2a protein n=1 Tax=Cucumber mosaic virus RepID=B6V8E8_9BROM
Length = 858
Score = 80.9 bits (198), Expect = 7e-14
Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E F+++ +
Sbjct: 744 ELYFSDRRQ 752
[43][TOP]
>UniRef100_A2TLI8 2a n=1 Tax=Cucumber mosaic virus RepID=A2TLI8_9BROM
Length = 858
Score = 80.9 bits (198), Expect = 7e-14
Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSPFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E F+++ +
Sbjct: 744 ELYFSDRRQ 752
[44][TOP]
>UniRef100_Q9YJS0 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9YJS0_9BROM
Length = 821
Score = 80.5 bits (197), Expect = 9e-14
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIVQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[45][TOP]
>UniRef100_Q6T7E6 2a protein n=1 Tax=Peanut stunt virus RepID=Q6T7E6_9BROM
Length = 845
Score = 80.5 bits (197), Expect = 9e-14
Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL +++ + + + LFT
Sbjct: 575 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRLLFSGDDSLAFSLKPIVGNPD-LFT 631
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDE 224
+LFN+EAK P+ICSKFL+T VP+PL+ L RLG+KK+ D D+
Sbjct: 632 SLFNIEAKNMEPPVPYICSKFLLT----DELGHTFSVPDPLRELQRLGTKKIPDDDSDD 686
[46][TOP]
>UniRef100_Q6T7E1 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6T7E1_9BROM
Length = 858
Score = 80.5 bits (197), Expect = 9e-14
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMDPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKHRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[47][TOP]
>UniRef100_Q6T7D7 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6T7D7_9BROM
Length = 858
Score = 80.5 bits (197), Expect = 9e-14
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMDPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKHRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[48][TOP]
>UniRef100_Q83944 2a protein n=1 Tax=Olive latent virus 2 RepID=Q83944_OLV2
Length = 787
Score = 80.1 bits (196), Expect = 1e-13
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
+QRRTG+ TY GNT+VT+ + VY L D + SGDD+LI T L + LF
Sbjct: 566 YQRRTGNTATYFGNTLVTMIMMAEVYEL-DSLPFCGLFSGDDNLIVTDRPL-EGRVSLFP 623
Query: 397 TLFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+FN+EAK Q ++CSK+L T+ V PVP+P KLL + G+ + D++
Sbjct: 624 NMFNMEAKVMRPGQNYMCSKYLCTV-----DGRVTPVPDPFKLLKKAGA-SCPLEHLDDF 677
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
Y+S++D V + + AHRY
Sbjct: 678 YESFLDYTKYLVRDEVRTLIPRLMAHRY 705
[49][TOP]
>UniRef100_Q2MCK7 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus (strain
Ri-8) RepID=Q2MCK7_9BROM
Length = 857
Score = 80.1 bits (196), Expect = 1e-13
Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[50][TOP]
>UniRef100_Q18PS2 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q18PS2_9BROM
Length = 857
Score = 80.1 bits (196), Expect = 1e-13
Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLSPVGDPSKFT 628
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[51][TOP]
>UniRef100_B6CWI1 2a protein n=1 Tax=Peanut stunt virus RepID=B6CWI1_9BROM
Length = 834
Score = 80.1 bits (196), Expect = 1e-13
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT
Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE
Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDEA 671
Query: 220 Y 218
Y
Sbjct: 672 Y 672
[52][TOP]
>UniRef100_Q9IR76 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9IR76_9BROM
Length = 857
Score = 79.7 bits (195), Expect = 1e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[53][TOP]
>UniRef100_Q8V393 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8V393_9BROM
Length = 840
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[54][TOP]
>UniRef100_Q8QME1 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QME1_9BROM
Length = 840
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[55][TOP]
>UniRef100_Q8QME0 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QME0_9BROM
Length = 840
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[56][TOP]
>UniRef100_Q8AZL7 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8AZL7_9BROM
Length = 840
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[57][TOP]
>UniRef100_Q75ND6 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q75ND6_9BROM
Length = 840
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[58][TOP]
>UniRef100_Q6L6Q8 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6L6Q8_9BROM
Length = 858
Score = 79.7 bits (195), Expect = 1e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[59][TOP]
>UniRef100_Q202D7 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q202D7_9BROM
Length = 858
Score = 79.7 bits (195), Expect = 1e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[60][TOP]
>UniRef100_Q0PP56 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
RepID=Q0PP56_9BROM
Length = 858
Score = 79.7 bits (195), Expect = 1e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[61][TOP]
>UniRef100_B2ZHC4 2a protein n=1 Tax=Cucumber mosaic virus RepID=B2ZHC4_9BROM
Length = 840
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[62][TOP]
>UniRef100_A6YQP2 2a n=1 Tax=Cucumber mosaic virus RepID=A6YQP2_9BROM
Length = 840
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[63][TOP]
>UniRef100_A2THY8 2a protein n=1 Tax=Cucumber mosaic virus RepID=A2THY8_9BROM
Length = 857
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 628
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[64][TOP]
>UniRef100_O40977 RNA-directed RNA polymerase 2A n=2 Tax=Cucumber mosaic virus
RepID=ORF2A_CMVNT
Length = 857
Score = 79.7 bits (195), Expect = 1e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[65][TOP]
>UniRef100_Q86783 RNA-directed RNA polymerase 2A n=2 Tax=Cucumber mosaic virus
RepID=ORF2A_CMVK
Length = 858
Score = 79.7 bits (195), Expect = 1e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[66][TOP]
>UniRef100_P16490 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
FNY) RepID=ORF2A_CMVFN
Length = 857
Score = 79.7 bits (195), Expect = 1e-13
Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDALTY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDALTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[67][TOP]
>UniRef100_O39436 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
As) RepID=ORF2A_CMVAS
Length = 858
Score = 79.7 bits (195), Expect = 1e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPCSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[68][TOP]
>UniRef100_C8CAI9 2a (Fragment) n=1 Tax=Cucumber mosaic virus RepID=C8CAI9_9BROM
Length = 318
Score = 79.3 bits (194), Expect = 2e-13
Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 73 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 129
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL+ VP+PL+ + RLG+KK+ N D
Sbjct: 130 TLFNMEAKVMEPAVPYICSKFLL----FDEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 185
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 186 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 244
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 245 ELYYSDRQQCDL 256
[69][TOP]
>UniRef100_Q9YNL6 Putative RNA dependent RNA polymerase n=1 Tax=Peanut stunt virus
RepID=Q9YNL6_9BROM
Length = 834
Score = 79.0 bits (193), Expect = 3e-13
Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT
Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE
Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDWGLDES 671
Query: 220 Y 218
Y
Sbjct: 672 Y 672
[70][TOP]
>UniRef100_Q9WA71 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9WA71_9BROM
Length = 858
Score = 79.0 bits (193), Expect = 3e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSILPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSLFFELKYRKSGAEAALILGAFKKYTANFKSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[71][TOP]
>UniRef100_Q85065 2a protein n=1 Tax=Peanut stunt virus RepID=Q85065_9BROM
Length = 834
Score = 79.0 bits (193), Expect = 3e-13
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 8/188 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA T GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT
Sbjct: 559 FQRRTGDAFTSFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE
Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671
Query: 220 Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62
Y S++D + H+ + + +Y ++ A LE K + ++
Sbjct: 672 YLKAHFMSFVDRLKFLPRMTHYTVAQLTTFYEMKY-KKSGAECHAMLEGFAKYSTNFSIY 730
Query: 61 KECLFNEK 38
KE +++
Sbjct: 731 KELYISDQ 738
[72][TOP]
>UniRef100_B1VCT9 2a protein n=1 Tax=Peanut stunt virus RepID=B1VCT9_9BROM
Length = 834
Score = 79.0 bits (193), Expect = 3e-13
Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A Y+ + ++ SGDDSL ++ + ++ FT
Sbjct: 564 FQRRTGDAFTYFGNTLVTMALFAWCYD--TDHFNRLLFSGDDSLAFSLNPIEGRSDW-FT 620
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+LFN+EAK P+ICSKFL+T VP+PL+ L RLG+KK+ D+
Sbjct: 621 SLFNMEAKNMDPPTPYICSKFLLT----DELGHTFSVPDPLRELQRLGTKKIPDGGVDDS 676
Query: 220 Y 218
Y
Sbjct: 677 Y 677
[73][TOP]
>UniRef100_P03594 RNA-directed RNA polymerase 2A n=1 Tax=Brome mosaic virus
RepID=ORF2A_BMV
Length = 822
Score = 79.0 bits (193), Expect = 3e-13
Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + +L D + + SGDDSLI + + D + +FT
Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
+LFN+E K + P++CSKFL+ T G+ ++ VP+PL+ + RL +K+ D
Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGN--LVSVPDPLREIQRLAKRKILRD 627
[74][TOP]
>UniRef100_Q8QXZ6 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QXZ6_9BROM
Length = 857
Score = 78.6 bits (192), Expect = 3e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[75][TOP]
>UniRef100_Q66144 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q66144_9BROM
Length = 858
Score = 78.6 bits (192), Expect = 3e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFPWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[76][TOP]
>UniRef100_Q5QQK8 Replicase protein n=1 Tax=Cucumber mosaic virus RepID=Q5QQK8_9BROM
Length = 772
Score = 78.6 bits (192), Expect = 3e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[77][TOP]
>UniRef100_C4TP50 Replicase n=1 Tax=Cucumber mosaic virus RepID=C4TP50_9BROM
Length = 857
Score = 78.6 bits (192), Expect = 3e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[78][TOP]
>UniRef100_Q66136 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
B) RepID=ORF2A_CMVB
Length = 857
Score = 78.6 bits (192), Expect = 3e-13
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDSSKFT 628
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ ++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMQFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[79][TOP]
>UniRef100_Q9Q1T5 2a protein n=1 Tax=Peanut stunt virus RepID=Q9Q1T5_9BROM
Length = 833
Score = 78.2 bits (191), Expect = 4e-13
Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT
Sbjct: 562 FQRRTGDAFTYFGNTLVTMALFAWCYD--TDQFDRLLFSGDDSLAFSLSPVEGRSDW-FT 618
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+LFN+EAK P+ICSKFL+T VP+PL+ L RLG+KK+ D+
Sbjct: 619 SLFNMEAKNMDPPTPYICSKFLLT----DDLGHTFSVPDPLRELQRLGTKKIPDGGVDDS 674
Query: 220 Y 218
Y
Sbjct: 675 Y 675
[80][TOP]
>UniRef100_Q8QVF9 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8QVF9_9BROM
Length = 840
Score = 78.2 bits (191), Expect = 4e-13
Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ E A L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNETAQVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[81][TOP]
>UniRef100_Q8B3N0 RNA dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
RepID=Q8B3N0_9BROM
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[82][TOP]
>UniRef100_Q8B3M7 RNA dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
RepID=Q8B3M7_9BROM
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[83][TOP]
>UniRef100_Q8B3M4 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8B3M4_9BROM
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LYAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[84][TOP]
>UniRef100_Q83261 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q83261_9BROM
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[85][TOP]
>UniRef100_Q75VK5 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
RepID=Q75VK5_9BROM
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[86][TOP]
>UniRef100_O90707 RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=O90707_9BROM
Length = 840
Score = 78.2 bits (191), Expect = 4e-13
Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN++AK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 626 TLFNMKAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740
Query: 58 ECLFNEKHESNV 23
E ++++ + ++
Sbjct: 741 ELYYSDRQQCDL 752
[87][TOP]
>UniRef100_C7C690 Replicase (Fragment) n=1 Tax=Cucumber mosaic virus
RepID=C7C690_9BROM
Length = 438
Score = 78.2 bits (191), Expect = 4e-13
Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 265 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 321
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D
Sbjct: 322 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 377
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
+ S++D + F D C+ ++ L+ EAAL
Sbjct: 378 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAL 420
[88][TOP]
>UniRef100_B6VQB2 2a protein n=1 Tax=Cucumber mosaic virus RepID=B6VQB2_9BROM
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[89][TOP]
>UniRef100_B0I4W0 2a protein n=1 Tax=Cucumber mosaic virus RepID=B0I4W0_9BROM
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[90][TOP]
>UniRef100_Q83265 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
Y) RepID=ORF2A_CMVY
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[91][TOP]
>UniRef100_Q96711 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
Kor) RepID=ORF2A_CMVKO
Length = 857
Score = 78.2 bits (191), Expect = 4e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[92][TOP]
>UniRef100_Q91F44 2a protein (Fragment) n=1 Tax=Cucumber mosaic virus
RepID=Q91F44_9BROM
Length = 176
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT
Sbjct: 27 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 83
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 84 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 139
Query: 220 ----YQSWIDTI 197
+ S++D +
Sbjct: 140 LFAHFMSFVDRL 151
[93][TOP]
>UniRef100_Q8QXZ0 Putative RNA dependent RNA polymerase (Fragment) n=1 Tax=Cucumber
mosaic virus RepID=Q8QXZ0_9BROM
Length = 256
Score = 77.8 bits (190), Expect = 6e-13
Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 90 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 146
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 147 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 202
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
+ S++D + F D C+ ++ L+ EAAL
Sbjct: 203 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAAL 245
[94][TOP]
>UniRef100_Q80IV0 RNA-dependent-RNA polymerase n=1 Tax=Cucumber mosaic virus
RepID=Q80IV0_9BROM
Length = 857
Score = 77.8 bits (190), Expect = 6e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYRKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[95][TOP]
>UniRef100_Q65662 2a protein n=1 Tax=Brome mosaic virus RepID=Q65662_BMV
Length = 822
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + +L D + + SGDDSLI + + D + +FT
Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
+LFN+E K + P++CSKFL+ T G+ ++ +P+P++ + RL +K+ D
Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGN--LVSIPDPMREIQRLAKRKILRD 627
[96][TOP]
>UniRef100_Q20A32 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q20A32_9BROM
Length = 858
Score = 77.8 bits (190), Expect = 6e-13
Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 573 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSILPPVGDPSKFT 629
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 630 TLFNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYPDDDEF 685
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
+ S++D + F D C+ ++ L+ EAAL
Sbjct: 686 LFAHFMSFVDRLR-FLDRMSQSCIDQLSFFFELKYKKSGEEAAL 728
[97][TOP]
>UniRef100_Q66117 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
Ixora) RepID=ORF2A_CMVIX
Length = 858
Score = 77.8 bits (190), Expect = 6e-13
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ GDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFPGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[98][TOP]
>UniRef100_Q83262 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
Iizuka) RepID=ORF2A_CMVII
Length = 857
Score = 77.8 bits (190), Expect = 6e-13
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[99][TOP]
>UniRef100_Q9IVE4 Polymerase n=1 Tax=Cucumber mosaic virus (strain Mf)
RepID=Q9IVE4_9BROM
Length = 857
Score = 77.0 bits (188), Expect = 1e-12
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLIFSGDDSL-GFSLLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ CSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYTCSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[100][TOP]
>UniRef100_Q91F43 2a protein (Fragment) n=1 Tax=Cucumber mosaic virus
RepID=Q91F43_9BROM
Length = 176
Score = 77.0 bits (188), Expect = 1e-12
Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 27 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 83
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 84 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 139
Query: 220 ----YQSWIDTIGVFNDHHVIRCV 161
+ S++D + F D C+
Sbjct: 140 LFAHFMSFVDRL-KFLDRMTQSCI 162
[101][TOP]
>UniRef100_Q50L55 2a protein n=1 Tax=Cassia yellow blotch virus RepID=Q50L55_9BROM
Length = 779
Score = 77.0 bits (188), Expect = 1e-12
Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 1/115 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT++ + + Y+L +++ SGDDSL+ E + LF
Sbjct: 525 FQRRTGDAFTYFGNTLVTMSMMAYCYDL--SKMEYCFFSGDDSLL-ISREKHSFEPLLFQ 581
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236
+LFN+E K + P+ICSK+L+ +G +VV VP+P++ + R+ +K+ D
Sbjct: 582 SLFNMEIKVMEPSLPYICSKYLL---ETTGGRVV-SVPDPVREIQRMSKRKIVKD 632
[102][TOP]
>UniRef100_B3GR05 2a protein n=1 Tax=Cucumber mosaic virus RepID=B3GR05_9BROM
Length = 858
Score = 77.0 bits (188), Expect = 1e-12
Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 573 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLIFSGDDSL-GFSILPPVGDPSKFT 629
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK + P+ICSKF ++ VP+PL+ + RLG+KK+ DE+
Sbjct: 630 TLFNMEAKVMEPSVPYICSKFXLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDGDEF 685
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
+ S++D + F D C+ ++ L+ EAAL
Sbjct: 686 LFAHFMSFVDRL-KFLDRMSQSCIDQLSFFFELKYKKSGEEAAL 728
[103][TOP]
>UniRef100_A0SL68 2a protein n=1 Tax=Brome mosaic virus RepID=A0SL68_BMV
Length = 822
Score = 76.6 bits (187), Expect = 1e-12
Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + +L D + + SGDDSLI + + D + +FT
Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV 245
+LFN+E K + P++CSKFL+ T G+ V +P+P++ + RL +K+
Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGNWV--SIPDPMREIQRLAKRKI 624
[104][TOP]
>UniRef100_Q65383 2a protein n=1 Tax=Broad bean mottle virus RepID=Q65383_BBMV
Length = 827
Score = 76.3 bits (186), Expect = 2e-12
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + +++ + + SGDDSL+ P +F
Sbjct: 540 FQRRTGDAFTYFGNTLVTMAMMAYCFDM--STAELAMFSGDDSLV-ICGSKPEFDPSIFQ 596
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADI 233
+LFN+E K + P+ICSKFL+ S V VP+P++ + RL +K+ D+
Sbjct: 597 SLFNMEVKVMDPSLPYICSKFLLE----SEFGDVFSVPDPMREIQRLQKRKIPKDV 648
[105][TOP]
>UniRef100_Q6RKQ4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 3 RepID=Q6RKQ4_9CLOS
Length = 538
Score = 75.9 bits (185), Expect = 2e-12
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGN++V L V +D ++V SGDDSLI + + L D L +
Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E
Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+QS++D FN VI+ +A + +Y
Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469
[106][TOP]
>UniRef100_O71189 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 3 RepID=O71189_9CLOS
Length = 538
Score = 75.9 bits (185), Expect = 2e-12
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGN++V L V +D ++V SGDDSLI + + L D L +
Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E
Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+QS++D FN VI+ +A + +Y
Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469
[107][TOP]
>UniRef100_C4TP45 Replicase n=1 Tax=Cucumber mosaic virus RepID=C4TP45_9BROM
Length = 857
Score = 75.9 bits (185), Expect = 2e-12
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQ RTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQGRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+
Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684
Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59
+ S++D + F D C+ ++ L+ EAA L + K A+ K
Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743
Query: 58 ECLFNEKHE 32
E ++++ +
Sbjct: 744 ELYYSDRRQ 752
[108][TOP]
>UniRef100_B3FQ65 RNA dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 3 RepID=B3FQ65_9CLOS
Length = 538
Score = 75.9 bits (185), Expect = 2e-12
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGN++V L V +D ++V SGDDSLI + + L D L +
Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E
Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+QS++D FN VI+ +A + +Y
Sbjct: 442 FQSFVDLSRGFNREDVIQELAKLVTRKY 469
[109][TOP]
>UniRef100_Q65382 2a protein n=1 Tax=Broad bean mottle virus RepID=Q65382_BBMV
Length = 827
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + +++ + + SGDDSL+ P +F
Sbjct: 540 FQRRTGDAFTYFGNTLVTMAMMAYCFDM--STAELAMFSGDDSLV-ICGSKPEFDPGVFQ 596
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADI 233
+LFN+E K + P+ICSKFL+ S V VP+P++ + RL +K+ D+
Sbjct: 597 SLFNMEVKVMDPSLPYICSKFLLE----SEFGDVFSVPDPMREIQRLQKRKIPKDV 648
[110][TOP]
>UniRef100_Q0PP58 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus
RepID=Q0PP58_9BROM
Length = 858
Score = 75.5 bits (184), Expect = 3e-12
Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT
Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+K++ DE+
Sbjct: 629 TLFNMEAKVVEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKRIPYSDNDEF 684
Query: 220 ----YQSWIDTI 197
+ S++D +
Sbjct: 685 LFAHFMSFVDRL 696
[111][TOP]
>UniRef100_Q8BEM5 2a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM5_CCMV
Length = 808
Score = 75.1 bits (183), Expect = 4e-12
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + ++ V + SGDDSL+ + P +F
Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227
+LFN+E K + P++CSKFL+ + ++ VP+P++ + RL +K+ + ++
Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643
Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137
++S+ D + N D +I + A +Y
Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675
[112][TOP]
>UniRef100_Q8BEM2 2a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM2_CCMV
Length = 808
Score = 75.1 bits (183), Expect = 4e-12
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + ++ V + SGDDSL+ + P +F
Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227
+LFN+E K + P++CSKFL+ + ++ VP+P++ + RL +K+ + ++
Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643
Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137
++S+ D + N D +I + A +Y
Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675
[113][TOP]
>UniRef100_D0AB44 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus
RepID=D0AB44_9BROM
Length = 91
Score = 75.1 bits (183), Expect = 4e-12
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIG 440
+QRRTGDA TYLGNTIVTLA LC+VY+L NV VVASGDDSLIG
Sbjct: 46 YQRRTGDACTYLGNTIVTLAALCYVYDLQSSNVTMVVASGDDSLIG 91
[114][TOP]
>UniRef100_P20179 RNA-directed RNA polymerase 2A n=1 Tax=Cowpea chlorotic mottle
virus RepID=ORF2A_CCMV
Length = 808
Score = 75.1 bits (183), Expect = 4e-12
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNT+VT+A + + ++ V + SGDDSL+ + P +F
Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227
+LFN+E K + P++CSKFL+ + ++ VP+P++ + RL +K+ + ++
Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643
Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137
++S+ D + N D +I + A +Y
Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675
[115][TOP]
>UniRef100_D0AB43 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus
RepID=D0AB43_9BROM
Length = 91
Score = 74.7 bits (182), Expect = 5e-12
Identities = 36/46 (78%), Positives = 39/46 (84%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIG 440
+QRRTGDA TYLGNTIVTLA LC+VY+L NV VVASGDDSLIG
Sbjct: 46 YQRRTGDACTYLGNTIVTLAALCYVYDLKSSNVAMVVASGDDSLIG 91
[116][TOP]
>UniRef100_Q9DUT2 Putative 2a protein n=1 Tax=Pelargonium zonate spot virus
RepID=Q9DUT2_PZSV
Length = 687
Score = 73.6 bits (179), Expect = 1e-11
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA T+ GNT+VT+A Y+ + ++ +GDDSL + + ++ F
Sbjct: 488 FQRRTGDAFTFFGNTLVTMAMFSFCYDTR--QFEKMLFAGDDSLAISSSPIVGCSDY-FV 544
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221
+LFN+EAK P+ICSKFL++ P+P++ RLG KK++AD D
Sbjct: 545 SLFNMEAKIMDPGVPYICSKFLVS----DELGRCFSAPDPIREFQRLGKKKISADNDDAL 600
Query: 220 YQSWI 206
++ ++
Sbjct: 601 FEQYV 605
[117][TOP]
>UniRef100_A4ZZ83 RNA-dependent RNA polymerase 2 (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 3 RepID=A4ZZ83_9CLOS
Length = 342
Score = 73.6 bits (179), Expect = 1e-11
Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGN++V L V +D +VV SGDDSLI + L D L +
Sbjct: 129 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YDYVVVSGDDSLIFSKRPLDIDTVVL-SD 185
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E
Sbjct: 186 NFGFDVKVFNQAAPYFCSKFLVQV-----EDDLYFVPDPLKLFVKFGASKTSDIDLLHEI 240
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+QS++D FN VI+ + + +Y
Sbjct: 241 FQSFVDLSRGFNREDVIQALVHLVTRKY 268
[118][TOP]
>UniRef100_Q6QCI3 Polymerase (Fragment) n=1 Tax=Mint vein banding-associated virus
RepID=Q6QCI3_9CLOS
Length = 520
Score = 73.2 bits (178), Expect = 1e-11
Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G + T+LGNTI T+A L Y D + + +GDDSLI + L E L
Sbjct: 331 QRRSGASNTFLGNTITTMAILSMYYTYED--CELCMFAGDDSLILGSKSLDDCCE-LINK 387
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA-DIFDEW 221
FN+E+KF HN P+ CSK++ LS + L VP+P K+L++LG ++ DE
Sbjct: 388 DFNMESKFIHNSTPYFCSKYI-----LSFNGKALVVPDPYKMLVKLGKSYFDSKSNVDER 442
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRP 125
+QS+ D +++ V+ + + RY P
Sbjct: 443 FQSFKDLTSSYDNDLVVSKLVFYHSLRYKPNP 474
[119][TOP]
>UniRef100_Q4EW63 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=Q4EW63_9CLOS
Length = 459
Score = 73.2 bits (178), Expect = 1e-11
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYVSGDDSLIFSRSEISNYADDICTD 306
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA--DIFDE 224
+ E KF + P+ CSKF++ + G K VP+P KL ++LG+ K +A D E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDASMDFLFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D FND +I+ +A + A +Y
Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389
[120][TOP]
>UniRef100_O71210 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=O71210_9CLOS
Length = 459
Score = 73.2 bits (178), Expect = 1e-11
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
+ E KF + P+ CSKF++ + G K VP+P KL ++LG+ K V+ D E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D FND +I+ +A + A +Y
Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389
[121][TOP]
>UniRef100_B7U5T6 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=B7U5T6_9CLOS
Length = 459
Score = 73.2 bits (178), Expect = 1e-11
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
+ E KF + P+ CSKF++ + G K VP+P KL ++LG+ K V+ D E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D FND +I+ +A + A +Y
Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389
[122][TOP]
>UniRef100_Q1PQK5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 3 RepID=Q1PQK5_9CLOS
Length = 543
Score = 72.4 bits (176), Expect = 2e-11
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGN+IV L V +D +VV SGDDSLI + + L D L +
Sbjct: 330 QRRSGGANTWLGNSIVLCTLLSVVLRGLD--YDYVVISGDDSLIFSRQPLDVDTSVL-SD 386
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K F P+ CSKF++ + + VP+PLKL ++ G SK + D+ E
Sbjct: 387 NFGFDVKMFNQAAPYFCSKFMVQV-----DDGLFFVPDPLKLFVKFGASKTSDIDLLHEI 441
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+QS++D N VI+ + + +Y
Sbjct: 442 FQSFVDLSKGLNREDVIQALTHLVTRKY 469
[123][TOP]
>UniRef100_B2C4G0 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 3 RepID=B2C4G0_9CLOS
Length = 541
Score = 72.4 bits (176), Expect = 2e-11
Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGN++V L V +D ++V SGDDS I + + L D L +
Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVPRGLD--YSYIVVSGDDSPIFSRQPLDIDTSVL-SE 386
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E
Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+QS++D FN VI+ +A + +Y
Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469
[124][TOP]
>UniRef100_A4GWE5 RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated
virus 3 RepID=A4GWE5_9CLOS
Length = 200
Score = 72.4 bits (176), Expect = 2e-11
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGN+IV L V +D +VV SGDDSLI + + L D L +
Sbjct: 58 QRRSGGANTWLGNSIVLCTLLSVVLRGLD--YDYVVISGDDSLIFSRQPLDVDTSVL-SD 114
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K F P+ CSKF++ + + VP+PLKL ++ G SK + D+ E
Sbjct: 115 NFGFDVKMFNQAAPYFCSKFMVQV-----DDGLFFVPDPLKLFVKFGASKTSDIDLLHEI 169
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+QS++D N VI+ + + +Y
Sbjct: 170 FQSFVDLSKGLNREDVIQALTHLVTRKY 197
[125][TOP]
>UniRef100_Q49IH2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=Q49IH2_9CLOS
Length = 459
Score = 71.6 bits (174), Expect = 4e-11
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA--DIFDE 224
+ E KF + P+ CSKF++ + G K VP+P KL ++LG+ K +A D E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDASMDFLFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D FND +I+ +A + A +Y
Sbjct: 361 VFTSFKDLTTDFNDERLIQKLAELVAVKY 389
[126][TOP]
>UniRef100_C6GFJ8 1b n=1 Tax=Carrot yellow leaf virus RepID=C6GFJ8_9CLOS
Length = 478
Score = 71.2 bits (173), Expect = 5e-11
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 6/173 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T++GN++VTL L Y+L ++ V SGDDSLI + ++L E +
Sbjct: 263 QRRSGAANTWIGNSVVTLGILSLYYDL--AKMQGVFISGDDSLIFSSQKLSNHSEAICLE 320
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227
EAKF + P+ CSKFL+ VP+P KL+++LG S+ +AD+F
Sbjct: 321 T-GFEAKFMSPSVPYFCSKFLVFC-----EHKFFFVPDPYKLIVKLGQVRSEVEDADLF- 373
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA--ALESLGKIFAS 74
E + S+ D +D V+ +A + +Y + L A A+ LG F+S
Sbjct: 374 EIFTSFKDLTKDMHDERVLEYLARLVEEKYDVKSRCVLSALHAVHCLGSNFSS 426
[127][TOP]
>UniRef100_P06012 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain
Q) RepID=ORF2A_CMVQ
Length = 839
Score = 70.9 bits (172), Expect = 7e-11
Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398
FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT
Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625
Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNP-LKLLIRLGSKKV----NAD 236
TLFN+EAK P+ICSKF M +V +P ++ + RLG+KK+ N D
Sbjct: 626 TLFNMEAKVMEPAVPYICSKFYSLM------SLVTRFQSPTIREIQRLGTKKIPYSDNND 679
Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLC 62
+ S++D + F D C+ ++ L+ EAA L + K A+
Sbjct: 680 FLFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAY 738
Query: 61 KECLFNEKHESNV 23
KE ++++ + ++
Sbjct: 739 KELYYSDRQQCDL 751
[128][TOP]
>UniRef100_Q65854 RNA replicase (Fragment) n=1 Tax=Beet yellow stunt virus
RepID=Q65854_9CLOS
Length = 460
Score = 70.5 bits (171), Expect = 9e-11
Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN++VTL L Y++ FV SGDDSLI + +E+ E +
Sbjct: 251 QRKSGASNTWIGNSVVTLGILAMYYDVSKFQALFV--SGDDSLIFSADEIANYAEDICLE 308
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
L E KF + P+ CSKFL+ +G K V VP+P KLL++LG+ ++++ + E
Sbjct: 309 L-GFETKFLTPSVPYFCSKFLV----FTGDKCVF-VPDPYKLLVKLGASGRRLSDEELFE 362
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ ++ + +Y
Sbjct: 363 VFVSFRDLTKEFGDERVLNTLSELVHLKY 391
[129][TOP]
>UniRef100_Q19PH3 Replicase-associated protein (Fragment) n=1 Tax=Solanum
violaefolium ringspot virus RepID=Q19PH3_9VIRU
Length = 198
Score = 70.5 bits (171), Expect = 9e-11
Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 3/181 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+GD T++GNTI +A L +++++ + F SGDDSL+ + F+
Sbjct: 27 QRRSGDGGTFIGNTIFLMAVLSYIFDM--SKMDFATFSGDDSLLIADKRYLSCDSSKFSD 84
Query: 394 LFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDE 224
LFNL+ KF + CSKFLI + VP+P+KLL+RL +N +E
Sbjct: 85 LFNLDVKFFDKFEYYHFCSKFLIPV-----QDRWFFVPDPIKLLVRLSRCDLINWAHIEE 139
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFN 44
+ S D+ F D V+R + RY + S E + SL I + E LF+
Sbjct: 140 YRISLCDSTKFFGDIDVVRVLKEAVMERYAMQYS--FEEFIYSLRAIVTDPIMFME-LFD 196
Query: 43 E 41
E
Sbjct: 197 E 197
[130][TOP]
>UniRef100_Q9Q6Q3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 1 RepID=Q9Q6Q3_9CLOS
Length = 527
Score = 70.1 bits (170), Expect = 1e-10
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 2/191 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGNT+V + L +P++ VV GDDSLI + EL + L +
Sbjct: 344 QRRSGGANTWLGNTLVLMTLLAISLKGFEPDL--VVVCGDDSLIFSKNELVINDRILEES 401
Query: 394 LFNLEAKFP-HNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K P+ CSK+L+ P +P+P KL ++L ++ N D+ E
Sbjct: 402 -FGFDLKLTCQCVPYFCSKYLVRTP-----DHCYFLPDPFKLFLKLSLEREPNEDLLFEV 455
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41
+ S++D F D + ++ + M A RY P Y AA + + A+ K F+
Sbjct: 456 FTSFVDLTRGFGDENAVQQLVEMDAQRYGFNP--YAYAAFSLVHVLAANFVQFKRLFFDA 513
Query: 40 KHESNVKIKPR 8
K+K +
Sbjct: 514 DGAFGKKLKSK 524
[131][TOP]
>UniRef100_Q2V8A7 RNA-dependent RNA polymerase n=1 Tax=Grapevine leafroll-associated
virus 2 RepID=Q2V8A7_9CLOS
Length = 420
Score = 70.1 bits (170), Expect = 1e-10
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN++VTL L Y++ ++ SGDDSLI + +++ + +
Sbjct: 210 QRKSGASNTWIGNSLVTLGILSLYYDVRKFEALYI--SGDDSLIFSRDKISNYADDICAD 267
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
+ E KF + P+ CSKF++ + G K VP+P KL ++LG+ K V+ D E
Sbjct: 268 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 321
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D FND VI+ +A + A +Y
Sbjct: 322 TFTSFKDLTSDFNDERVIQKLAELVALKY 350
[132][TOP]
>UniRef100_Q8BEP8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine rootstock
stem lesion associated virus RepID=Q8BEP8_9CLOS
Length = 459
Score = 69.7 bits (169), Expect = 2e-10
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN++VTL L Y++ +V SGDDSLI + ++ + +
Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVRHFEALYV--SGDDSLIFSRNKISNYADDICAD 306
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
+ E KF + P+ CSKF++ + G K VP+P KL ++LG+ K V+ D E
Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D FND VI+ +A + A +Y
Sbjct: 361 TFTSFKDLTSDFNDERVIQKLAELVALKY 389
[133][TOP]
>UniRef100_A1YLW5 RNA dependent-RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 1 RepID=A1YLW5_9CLOS
Length = 527
Score = 69.7 bits (169), Expect = 2e-10
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGNT+V + L +P++ VV GDDSLI + EL + L +
Sbjct: 344 QRRSGGANTWLGNTLVLMTLLAISLKGSEPSL--VVVCGDDSLIFSKNELLINDRILEES 401
Query: 394 LFNLEAKFP-HNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
F + K P+ CSK+L+ P +P+P KL ++L ++ N D+ E
Sbjct: 402 -FGFDLKLTCQCAPYFCSKYLVRTP-----DHCYFLPDPFKLFLKLSLEREPNEDLLFEV 455
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
+ S++D + D + ++ + AM A RY P Y
Sbjct: 456 FTSFVDLTRGYGDENAVQQLVAMDAQRYGPNPYAY 490
[134][TOP]
>UniRef100_Q9DQ91 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
wilt-associated virus 2 RepID=Q9DQ91_9CLOS
Length = 559
Score = 68.6 bits (166), Expect = 3e-10
Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+LGNTIV + L + L + +V ++V SGDDSLI + E L D L T
Sbjct: 344 QRRSGGANTWLGNTIVVMTLLSIL--LEESHVDYIVVSGDDSLIFSTEPLDLDTHTL-TQ 400
Query: 394 LFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221
+ + K + P+ CSKFL+ L VP+P KL ++ G K + E
Sbjct: 401 NYGFDCKLLNMTAPYFCSKFLVQCKDL-----CYFVPDPFKLFVKHGICKSTSVSDLHER 455
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
+ S++D V+ VA +Y R Y
Sbjct: 456 FMSFVDVTKDLVSEDVVAAVAECVLWKYHRTNYTY 490
[135][TOP]
>UniRef100_O39852 RNA polymerase n=1 Tax=Grapevine leafroll-associated virus 2
RepID=O39852_9CLOS
Length = 420
Score = 68.6 bits (166), Expect = 3e-10
Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T
Sbjct: 210 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 267
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
+ E KF + P+ CSKF++ + G K V +P KL ++LG+ K V+ D E
Sbjct: 268 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VLDPYKLFVKLGAVKEDVSMDSLFE 321
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D FND +I+ +A + A +Y
Sbjct: 322 TFTSFKDLTSDFNDERLIQKLAELVALKY 350
[136][TOP]
>UniRef100_Q05983 Non-structural polyprotein protein n=1 Tax=Raspberry bushy dwarf
virus RepID=Q05983_RBDV
Length = 1694
Score = 68.2 bits (165), Expect = 4e-10
Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPN---VKFVVASGDDSLIGTVEELPRDQEF 407
FQRRTGDA T+LGN++VT A L V + DP+ +++++ GDDSLI + + E
Sbjct: 1503 FQRRTGDAFTFLGNSLVTAAMLAFV--ISDPDREKIRYMLVGGDDSLICSYGPIQVPLEP 1560
Query: 406 LFTTLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NAD 236
L +FN+ K P+ S++LI +L VP+P KLL++LG K V N
Sbjct: 1561 L-GDIFNMSCKLVQPACPYFASRYLIRR-----GDEILCVPDPYKLLVKLGRKDVPDNQA 1614
Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLR-RPSLY 116
E D+ D V + +A + RY + PSLY
Sbjct: 1615 SLCEIRTGLADSAKYIFDDIVKQKLAILVQVRYNKAAPSLY 1655
[137][TOP]
>UniRef100_Q15GA4 286 kDa polyprotein n=1 Tax=Citrus leprosis virus C
RepID=Q15GA4_9VIRU
Length = 2512
Score = 67.4 bits (163), Expect = 8e-10
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398
QRR+GD T++GNT+ +A ++L +K V SGDDS L+G +L D + F+
Sbjct: 2327 QRRSGDGGTFIGNTLFLIALCARSFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383
Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227
LFNL+ KF N + CSKFLI + +P+P+KL IRL VN +
Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLYIRLARLDLVNWGHIE 2438
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E+ S DT + D ++R ++ RY
Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468
[138][TOP]
>UniRef100_UPI00001678EC polyprotein n=2 Tax=Little cherry virus 1 RepID=UPI00001678EC
Length = 2806
Score = 67.0 bits (162), Expect = 1e-09
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L N++ TLA L VY+L D + ++ SGDDSLI + +E+ ++
Sbjct: 2627 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 2683
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233
F ++AKF N P+ CSKF+I + + VP+P++ +L + + + +
Sbjct: 2684 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSTPVTLVQLEHPTL 2738
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D +G + D +VI V + +Y
Sbjct: 2739 LRERFTSYRDLMGSYFDENVIIAVERFVSLKY 2770
[139][TOP]
>UniRef100_Q1KZ59 Replicase n=1 Tax=Citrus leprosis virus C RepID=Q1KZ59_9VIRU
Length = 2512
Score = 67.0 bits (162), Expect = 1e-09
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398
QRR+GD T++GNT+ +A ++L +K V SGDDS L+G +L D + F+
Sbjct: 2327 QRRSGDGGTFIGNTLFLIALCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383
Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227
LFNL+ KF N + CSKFLI + +P+P+KL IRL VN +
Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 2438
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E+ S DT + D ++R ++ RY
Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468
[140][TOP]
>UniRef100_O40960 RNA polymerase (POL) n=1 Tax=Little cherry virus 1
RepID=O40960_9CLOS
Length = 515
Score = 67.0 bits (162), Expect = 1e-09
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L N++ TLA L VY+L D + ++ SGDDSLI + +E+ ++
Sbjct: 336 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 392
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233
F ++AKF N P+ CSKF+I + + VP+P++ +L + + + +
Sbjct: 393 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSTPVTLVQLEHPTL 447
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D +G + D +VI V + +Y
Sbjct: 448 LRERFTSYRDLMGSYFDENVIIAVERFVSLKY 479
[141][TOP]
>UniRef100_B9VB57 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=B9VB57_9CLOS
Length = 477
Score = 66.2 bits (160), Expect = 2e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389
[142][TOP]
>UniRef100_B9VB33 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=B9VB33_9CLOS
Length = 477
Score = 66.2 bits (160), Expect = 2e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389
[143][TOP]
>UniRef100_B9VB09 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=B9VB09_9CLOS
Length = 477
Score = 66.2 bits (160), Expect = 2e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389
[144][TOP]
>UniRef100_O10468 57-kDa RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus
tristeza virus RepID=O10468_9CLOS
Length = 494
Score = 65.9 bits (159), Expect = 2e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 378 LFTSFKDXTQDFGDQVVLEKLKLLVEXKY 406
[145][TOP]
>UniRef100_C6ZED6 Polyprotein n=1 Tax=Little cherry virus 1 RepID=C6ZED6_9CLOS
Length = 2807
Score = 65.9 bits (159), Expect = 2e-09
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L N++ TLA L VY+L D + ++ SGDDSLI + +E+ ++
Sbjct: 2628 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 2684
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233
F ++AKF N P+ CSKF+I + + VP+P++ +L S + + +
Sbjct: 2685 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSSPVTLVQLEHPTL 2739
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D + ++ D +VI V + +Y
Sbjct: 2740 LRERFTSYRDLMVLYFDENVIIAVERFVSLKY 2771
[146][TOP]
>UniRef100_B9VB21 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=B9VB21_9CLOS
Length = 477
Score = 65.9 bits (159), Expect = 2e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSSEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389
[147][TOP]
>UniRef100_Q9IFW9 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9IFW9_9CLOS
Length = 477
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDNTQDFGDQVVLEKLKLLVEIKY 389
[148][TOP]
>UniRef100_Q9DTG4 54-kDa RNA-depended RNA polymerase (Fragment) n=1 Tax=Citrus
tristeza virus RepID=Q9DTG4_9CLOS
Length = 477
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPKYKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389
[149][TOP]
>UniRef100_Q2LK65 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q2LK65_9CLOS
Length = 477
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389
[150][TOP]
>UniRef100_Q1AF88 Polyprotein n=1 Tax=Citrus leprosis virus C RepID=Q1AF88_9VIRU
Length = 2512
Score = 65.5 bits (158), Expect = 3e-09
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398
QRR+GD T++GNT+ + ++L +K V SGDDS L+G +L D + F+
Sbjct: 2327 QRRSGDGGTFIGNTLFLIVLCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383
Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227
LFNL+ KF N + CSKFLI + +P+P+KL IRL VN +
Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 2438
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E+ S DT + D ++R ++ RY
Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468
[151][TOP]
>UniRef100_C6F419 RDRP protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=C6F419_9CLOS
Length = 477
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389
[152][TOP]
>UniRef100_B5THB8 p1b (Fragment) n=2 Tax=Citrus tristeza virus RepID=B5THB8_9CLOS
Length = 494
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 378 LFTSFKDNTQDFGDQVVLEKLKLLVEIKY 406
[153][TOP]
>UniRef100_B5THA6 p1b (Fragment) n=1 Tax=Citrus tristeza virus RepID=B5THA6_9CLOS
Length = 494
Score = 65.5 bits (158), Expect = 3e-09
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 378 LFTSFKDITQDFGDQVVLEKLKLLVETKY 406
[154][TOP]
>UniRef100_UPI0000163DDF RNA-dependant RNA polymerase n=1 Tax=Sweet potato chlorotic stunt
virus RepID=UPI0000163DDF
Length = 505
Score = 64.7 bits (156), Expect = 5e-09
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VT+ L +VY+L D + ++ SGDDSLI + ++L L
Sbjct: 326 QRRTGSPNTWLSNTLVTMGMLLNVYDLDD--IDLMLVSGDDSLIFSKKQLENKTNEL-NI 382
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230
F EAKF N P+ CSKF++ GS V+P P L + +RL S +
Sbjct: 383 NFGFEAKFIENSVPYFCSKFIVDD---RGSIKVVPDPVRFFEKLSVPVRL-SDFLAETTL 438
Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D + +++ V V ++ + RY
Sbjct: 439 RERFTSYKDLMSEYDNDSVCILVDSLISKRY 469
[155][TOP]
>UniRef100_Q8JJW9 Polyprotein n=2 Tax=Sweet potato chlorotic stunt virus
RepID=Q8JJW9_9CLOS
Length = 2492
Score = 64.7 bits (156), Expect = 5e-09
Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VT+ L +VY+L D + ++ SGDDSLI + ++L L
Sbjct: 2313 QRRTGSPNTWLSNTLVTMGMLLNVYDLDD--IDLMLVSGDDSLIFSKKQLENKTNEL-NI 2369
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230
F EAKF N P+ CSKF++ GS V+P P L + +RL S +
Sbjct: 2370 NFGFEAKFIENSVPYFCSKFIVDD---RGSIKVVPDPVRFFEKLSVPVRL-SDFLAETTL 2425
Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D + +++ V V ++ + RY
Sbjct: 2426 RERFTSYKDLMSEYDNDSVCILVDSLISKRY 2456
[156][TOP]
>UniRef100_P87588 54-kDa RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus
tristeza virus RepID=P87588_9CLOS
Length = 477
Score = 64.7 bits (156), Expect = 5e-09
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
Q R+G + T++GN++VTL L Y+ D + ++ SGDDSLI + E++ E
Sbjct: 249 QPRSGGSNTWIGNSLVTLGILSLYYD--DSKFELLLISGDDSLIYSKEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389
[157][TOP]
>UniRef100_D0EAN2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza
virus RepID=D0EAN2_9CLOS
Length = 503
Score = 64.7 bits (156), Expect = 5e-09
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E+ E
Sbjct: 280 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKAEIRNFSSEICLE 337
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G++ +P+P KLL++LG+ K+ D E
Sbjct: 338 TGFETKFMSP-SVPYFCSKFVVQ----TGNRTCF-IPDPYKLLVKLGAPQYKLTDDELFE 391
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
Y S+ D F D V+ + + +Y
Sbjct: 392 LYTSFKDVTQDFGDQVVLEKLKLLVEAKY 420
[158][TOP]
>UniRef100_A8RS54 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Plum bark necrosis
stem pitting-associated virus RepID=A8RS54_9CLOS
Length = 524
Score = 64.7 bits (156), Expect = 5e-09
Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 8/194 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-FT 398
QRRTG A T+LGNT+V +A + V L N + SGDDS++ P D + +
Sbjct: 330 QRRTGTATTWLGNTVVNMALMARV--LGCENFSSMAFSGDDSIL--FHHSPLDLDISNYE 385
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224
F + K F P+ CSKF + GS + VP+P+KL + LGS+K + + + E
Sbjct: 386 LHFAFDVKLFRMTVPYFCSKFFVV-----GSSGLNFVPDPVKLFVSLGSEKNDDESVMRE 440
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHR-----YLRRPSLYLEAALESLGKIFASKTLCK 59
+ S++D + D V + + + + +L L + + G+ LC+
Sbjct: 441 RFVSFLDLTKSYEDLTVCDNMTTLVSVKWGYSDFLSCSLFALHSLRANFGQFMRLWRLCQ 500
Query: 58 ECLFNEKHESNVKI 17
+ + EK E+ K+
Sbjct: 501 QNVVFEKFENRNKL 514
[159][TOP]
>UniRef100_UPI0000D9FD99 putative RNA dependent RNA polymerase; RdRp n=1 Tax=Citrus leprosis
virus C RepID=UPI0000D9FD99
Length = 440
Score = 64.3 bits (155), Expect = 6e-09
Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398
QRR+GD T++GNT+ +A ++L +K V SGDDS L+G +L D + F+
Sbjct: 309 QRRSGDGGTFIGNTLFLIALCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 365
Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227
LFNL+ KF N + CSKFLI + +P+P+KL IRL VN +
Sbjct: 366 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 420
Query: 226 EWYQSWIDTIGVFNDHHVIR 167
E+ S DT + D ++R
Sbjct: 421 EYRISLKDTTKYYCDDSIVR 440
[160][TOP]
>UniRef100_UPI0000164AC8 401-kDa viral polyprotein n=2 Tax=Citrus tristeza virus
RepID=UPI0000164AC8
Length = 3582
Score = 64.3 bits (155), Expect = 6e-09
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ ++ SGDDSLI + E++ E
Sbjct: 3348 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 3405
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227
T F + P + P+ CSKF++ +G+K VP+P KLL++LG +K + ++F
Sbjct: 3406 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 3458
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D F D V+ + + +Y
Sbjct: 3459 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 3488
[161][TOP]
>UniRef100_Q66238 57-kDa RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus
tristeza virus RepID=Q66238_9CLOS
Length = 500
Score = 64.3 bits (155), Expect = 6e-09
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ ++ SGDDSLI + E++ E
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 323
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227
T F + P + P+ CSKF++ +G+K VP+P KLL++LG +K + ++F
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 376
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D F D V+ + + +Y
Sbjct: 377 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 406
[162][TOP]
>UniRef100_D0EAM0 RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza
virus RepID=D0EAM0_9CLOS
Length = 494
Score = 64.3 bits (155), Expect = 6e-09
Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 323
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
T F + P + P+ CSKF++ +G+K +P+P KLL++LG+ K+ + E
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQNKLTDEELFE 377
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 378 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 406
[163][TOP]
>UniRef100_B9VB45 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=B9VB45_9CLOS
Length = 477
Score = 64.3 bits (155), Expect = 6e-09
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F + V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGNQVVLEKLKLLVEAKY 389
[164][TOP]
>UniRef100_B5THD0 p1b (Fragment) n=2 Tax=Citrus tristeza virus RepID=B5THD0_9CLOS
Length = 500
Score = 64.3 bits (155), Expect = 6e-09
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ ++ SGDDSLI + E++ E
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 323
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227
T F + P + P+ CSKF++ +G+K VP+P KLL++LG +K + ++F
Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 376
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D F D V+ + + +Y
Sbjct: 377 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 406
[165][TOP]
>UniRef100_UPI0000163D39 polyprotein n=2 Tax=Lettuce infectious yellows virus
RepID=UPI0000163D39
Length = 2379
Score = 63.5 bits (153), Expect = 1e-08
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL + Y++ D + ++ SGDDSLI + + LP + +
Sbjct: 2200 QRRTGSPNTWLSNTLVTLGMMLSSYDIDD--IDLLLVSGDDSLIFSRKHLPNKTQEI-NK 2256
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
F +EAK+ + P+ CSKF++ L+G V +P+P++ +L VN +
Sbjct: 2257 NFGMEAKYIEKSSPYFCSKFIV---ELNGKLKV--IPDPIRFFEKLSIPIRQEDFVNGSV 2311
Query: 232 FDEWYQSWIDTIGVF-NDHHVIRCVAAMTAHRY 137
E + S+ D + + ND VIR A+ +RY
Sbjct: 2312 VKERFISFKDLMKEYDNDVAVIRIDEAV-CYRY 2343
[166][TOP]
>UniRef100_Q83045 RNA-dependent RNA polymerase n=1 Tax=Lettuce infectious yellows
virus RepID=Q83045_LIYV
Length = 476
Score = 63.5 bits (153), Expect = 1e-08
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL + Y++ D + ++ SGDDSLI + + LP + +
Sbjct: 297 QRRTGSPNTWLSNTLVTLGMMLSSYDIDD--IDLLLVSGDDSLIFSRKHLPNKTQEI-NK 353
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
F +EAK+ + P+ CSKF++ L+G V +P+P++ +L VN +
Sbjct: 354 NFGMEAKYIEKSSPYFCSKFIV---ELNGKLKV--IPDPIRFFEKLSIPIRQEDFVNGSV 408
Query: 232 FDEWYQSWIDTIGVF-NDHHVIRCVAAMTAHRY 137
E + S+ D + + ND VIR A+ +RY
Sbjct: 409 VKERFISFKDLMKEYDNDVAVIRIDEAV-CYRY 440
[167][TOP]
>UniRef100_UPI00001BBB39 polyprotein n=1 Tax=Little cherry virus 2 RepID=UPI00001BBB39
Length = 2150
Score = 63.2 bits (152), Expect = 1e-08
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG + T+LGNTIV + L +V N DPN FV SGDDSL+ L RD +
Sbjct: 1971 QRRTGGSNTWLGNTIVNMVLLAYVKN-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 2023
Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236
+LE F P P+ CSK++I + + VP+ KL+ +LG + A+
Sbjct: 2024 KLSLELGFDVKFTPVATPYFCSKYII-----NTEDRIFIVPDIFKLVTKLGRVFARTKAE 2078
Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80
E ++S+ DTI F V+ +A +Y +Y A A+ +G F
Sbjct: 2079 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 2130
[168][TOP]
>UniRef100_Q9Q703 P348 n=1 Tax=Beet yellows virus RepID=Q9Q703_9CLOS
Length = 3090
Score = 63.2 bits (152), Expect = 1e-08
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN+IVTL L Y K + SGDDSLI + + + + T
Sbjct: 2879 QRKSGASNTWIGNSIVTLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2936
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
L E KF + P+ CSKF + ++G V VP+P KLL++LG+ K V+ + E
Sbjct: 2937 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2990
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D D VI + + +Y
Sbjct: 2991 VFTSFRDLTKDLVDERVIELLTHLVHSKY 3019
[169][TOP]
>UniRef100_Q7T737 RNA-dependent RNA polymerase n=1 Tax=Little cherry virus 2
RepID=Q7T737_9CLOS
Length = 515
Score = 63.2 bits (152), Expect = 1e-08
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG + T+LGNTIV + L +V N DPN FV SGDDSL+ L RD +
Sbjct: 336 QRRTGGSNTWLGNTIVNMVLLAYVKN-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 388
Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236
+LE F P P+ CSK++I + + VP+ KL+ +LG + A+
Sbjct: 389 KLSLELGFDVKFTPVATPYFCSKYII-----NTEDRIFIVPDIFKLVTKLGRVFARTKAE 443
Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80
E ++S+ DTI F V+ +A +Y +Y A A+ +G F
Sbjct: 444 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 495
[170][TOP]
>UniRef100_O89906 Fusion protein n=1 Tax=Beet yellows virus RepID=O89906_9CLOS
Length = 3070
Score = 63.2 bits (152), Expect = 1e-08
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN+IVTL L Y K + SGDDSLI + + + + T
Sbjct: 2859 QRKSGASNTWIGNSIVTLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2916
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
L E KF + P+ CSKF + ++G V VP+P KLL++LG+ K V+ + E
Sbjct: 2917 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2970
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D D VI + + +Y
Sbjct: 2971 VFTSFRDLTKDLVDERVIELLTHLVHSKY 2999
[171][TOP]
>UniRef100_UPI00004FF933 polymerase n=1 Tax=Blackberry yellow vein-associated virus
RepID=UPI00004FF933
Length = 505
Score = 62.8 bits (151), Expect = 2e-08
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL + Y + D + ++ SGDDSLI + E+LP +
Sbjct: 326 QRRTGSPNTWLSNTLVTLGIILSTYKIDD--IDLLLVSGDDSLIFSKEDLPNLANQI-NQ 382
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
F +EAKF N P+ CSKF+I + VP+P++ +L ++ +
Sbjct: 383 DFGMEAKFIVNSVPYFCSKFII-----EDRGEIKVVPDPVRFFEKLSVPIRLEDFLSETL 437
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E Y S+ D + F+ V V + RY
Sbjct: 438 LKEKYTSFKDLMVFFDSDTVCVLVDRLICIRY 469
[172][TOP]
>UniRef100_Q5ICW0 ORF 1a/1b fusion polyprotein n=2 Tax=Blackberry yellow
vein-associated virus RepID=Q5ICW0_9CLOS
Length = 2435
Score = 62.8 bits (151), Expect = 2e-08
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL + Y + D + ++ SGDDSLI + E+LP +
Sbjct: 2256 QRRTGSPNTWLSNTLVTLGIILSTYKIDD--IDLLLVSGDDSLIFSKEDLPNLANQI-NQ 2312
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
F +EAKF N P+ CSKF+I + VP+P++ +L ++ +
Sbjct: 2313 DFGMEAKFIVNSVPYFCSKFII-----EDRGEIKVVPDPVRFFEKLSVPIRLEDFLSETL 2367
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E Y S+ D + F+ V V + RY
Sbjct: 2368 LKEKYTSFKDLMVFFDSDTVCVLVDRLICIRY 2399
[173][TOP]
>UniRef100_B2BD41 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
wilt-associated virus 5 RepID=B2BD41_9CLOS
Length = 404
Score = 62.8 bits (151), Expect = 2e-08
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVA-SGDDSLIGTVEELPRDQEFLFT 398
QRRTG A T++GNT+V + L H D N VA +GDDSLI ++P ++
Sbjct: 225 QRRTGAANTWIGNTLVNMVLLSHA---CDVNTFDAVAFAGDDSLI-LKRDVPGVHYDVYD 280
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224
+ + + K + P+ C KFL+ G+K V+ +P+P K+ ++ G ++ D + E
Sbjct: 281 SKYEFDVKYYSEATPYFCGKFLL----WDGTKTVV-MPDPFKIFVKFGRERPPEDEVLKE 335
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
++S+ D ++ H +R ++ + ++ Y
Sbjct: 336 LWRSFFDVTRNYDSEHNVRTLSLLLGVKWANSVHAY 371
[174][TOP]
>UniRef100_UPI00001D9007 ORF 1b; RdRp; viral polymerase n=1 Tax=Beet pseudo-yellows virus
RepID=UPI00001D9007
Length = 505
Score = 62.4 bits (150), Expect = 2e-08
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL + Y+L D + ++ SGDDSLI + + L ++Q
Sbjct: 326 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 382
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
F +EAKF N P+ CSKF+I GS VL P+P++ +L +D +
Sbjct: 383 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGVM 437
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E Y S+ D + +N I V A+ + RY
Sbjct: 438 LRERYTSYKDLMVGYNLDTNIILVDALISVRY 469
[175][TOP]
>UniRef100_Q8JTI2 RNA-dependent RNA polymerase n=1 Tax=Little cherry virus 2
RepID=Q8JTI2_9CLOS
Length = 515
Score = 62.4 bits (150), Expect = 2e-08
Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG + T+LGNTIV + L +V + DPN FV SGDDSL+ L RD +
Sbjct: 336 QRRTGGSNTWLGNTIVNMVLLAYVKD-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 388
Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236
+LE F P P+ CSK+LI + + VP+ KL+ +LG + A+
Sbjct: 389 KLSLELGFDVKFTPVATPYFCSKYLI-----NTEDRIFVVPDIFKLVTKLGRVFARTKAE 443
Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80
E ++S+ DTI F V+ +A +Y +Y A A+ +G F
Sbjct: 444 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 495
[176][TOP]
>UniRef100_Q806Y8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cucumber yellows
virus RepID=Q806Y8_9CLOS
Length = 505
Score = 62.4 bits (150), Expect = 2e-08
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL + Y+L D + ++ SGDDSLI + + L ++Q
Sbjct: 326 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 382
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
F +EAKF N P+ CSKF+I GS VL P+P++ +L S + ++
Sbjct: 383 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGEM 437
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E Y S+ D + +N I V ++ + RY
Sbjct: 438 LRERYTSYKDLMVGYNLDTNIILVDSLISVRY 469
[177][TOP]
>UniRef100_Q6VRA8 ORF 1a/1b fusion polyprotein n=2 Tax=Beet pseudo-yellows virus
RepID=Q6VRA8_9CLOS
Length = 2441
Score = 62.4 bits (150), Expect = 2e-08
Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL + Y+L D + ++ SGDDSLI + + L ++Q
Sbjct: 2262 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 2318
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
F +EAKF N P+ CSKF+I GS VL P+P++ +L +D +
Sbjct: 2319 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGVM 2373
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E Y S+ D + +N I V A+ + RY
Sbjct: 2374 LRERYTSYKDLMVGYNLDTNIILVDALISVRY 2405
[178][TOP]
>UniRef100_A2ID04 P349 (Fragment) n=2 Tax=Citrus tristeza virus RepID=A2ID04_9CLOS
Length = 264
Score = 61.6 bits (148), Expect = 4e-08
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 201
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 255
Query: 223 WYQSWID 203
+ S+ D
Sbjct: 256 LFTSFKD 262
[179][TOP]
>UniRef100_B8YDL2 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=B8YDL2_9CLOS
Length = 477
Score = 61.2 bits (147), Expect = 5e-08
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + + E
Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSRAPISNFSSEICLE 306
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K +P+P KLL++LG+ K+ D E
Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQYKLTDDELFE 360
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKFLVEAKY 389
[180][TOP]
>UniRef100_B0F3U3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza
virus RepID=B0F3U3_9CLOS
Length = 508
Score = 61.2 bits (147), Expect = 5e-08
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + + E
Sbjct: 280 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSRAPISNFSSEICLE 337
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K +P+P KLL++LG+ K+ D E
Sbjct: 338 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQYKLTDDELFE 391
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D F D V+ + + +Y
Sbjct: 392 LFTSFKDITQDFGDQVVLEKLKFLVEAKY 420
[181][TOP]
>UniRef100_A0MBW4 Polymerase (Fragment) n=1 Tax=Raspberry leaf mottle virus
RepID=A0MBW4_9CLOS
Length = 467
Score = 61.2 bits (147), Expect = 5e-08
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ +D
Sbjct: 249 QRRSGGSNTWIGNSLVTLGLLSMYYDV--SKFRLLLISGDDSLIYSDEKI-KDHSSQICL 305
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK---VNADIFD 227
E KF + P+ CSKF++ +GS VP+P KLL++LG + D+F
Sbjct: 306 ETGFETKFLSPSVPYFCSKFVVQ----TGSMTYF-VPDPYKLLVKLGGSTPFVTDVDLF- 359
Query: 226 EWYQSWIDTIGVFNDHHVI 170
E + S+ D F DH V+
Sbjct: 360 EAFVSFRDLTRAF-DHQVM 377
[182][TOP]
>UniRef100_Q99FM0 Putative RNA-dependent RNA polymerase (Fragment) n=1 Tax=Little
cherry virus 2 RepID=Q99FM0_9CLOS
Length = 180
Score = 60.8 bits (146), Expect = 7e-08
Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG + T+LGNTIV + L +V + DPN FV SGDDSL+ L RD +
Sbjct: 44 QRRTGGSNTWLGNTIVNMVLLAYVKD-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 96
Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236
+LE F P P+ CSK+LI + + VP+ KL+ +LG + A+
Sbjct: 97 KLSLELGFDVKFTPVATPYFCSKYLI-----NTEDRIFVVPDIFKLVTKLGRVFARTKAE 151
Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVA 158
E ++S+ DTI F V+ +A
Sbjct: 152 GL-ETFESFKDTIKWFGRDDVVCLLA 176
[183][TOP]
>UniRef100_Q08534 Methyltransferase/helicase/RNA-directed RNA polymerase n=3 Tax=Beet
yellows virus RepID=R1AB_BYVU
Length = 3094
Score = 60.8 bits (146), Expect = 7e-08
Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QR++G + T++GN+I TL L Y K + SGDDSLI + + + + T
Sbjct: 2879 QRKSGASNTWIGNSIETLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2936
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224
L E KF + P+ CSKF + ++G V VP+P KLL++LG+ K V+ + E
Sbjct: 2937 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2990
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
+ S+ D D VI + + +Y
Sbjct: 2991 VFTSFRDLTKDLVDERVIELLTHLVHSKY 3019
[184][TOP]
>UniRef100_A2ID01 P349 (Fragment) n=1 Tax=Citrus tristeza virus RepID=A2ID01_9CLOS
Length = 264
Score = 60.5 bits (145), Expect = 9e-08
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E
Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKIGNFSSEICLE 201
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E
Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 255
Query: 223 WYQSWID 203
+ S+ D
Sbjct: 256 LFTSFKD 262
[185][TOP]
>UniRef100_UPI00003FE529 RNA-dependent RNA polymerase n=1 Tax=Potato yellow vein virus
RepID=UPI00003FE529
Length = 505
Score = 60.1 bits (144), Expect = 1e-07
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+ T+A + YNL D V+ + SGDDSLI + L + +
Sbjct: 326 QRRTGSPNTWLSNTLTTMAVVLSSYNLDD--VELFLVSGDDSLIFSKYPLDNRTQRM-NV 382
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221
F +EAKF N P+ CSKF+I + +P+P++ +L S V+ ++ W
Sbjct: 383 DFGMEAKFIENSVPYFCSKFII-----QDRGRIKVIPDPVRFFEKL-SVPVSYQDYENWN 436
Query: 220 -----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
+ S+ D + F+ V M + RY P++ AAL
Sbjct: 437 MIRERFISYKDLMVEFDYDTSCMLVDVMVSKRY-SLPNMASYAAL 480
[186][TOP]
>UniRef100_Q70PI7 Polyprotein n=2 Tax=Potato yellow vein virus RepID=Q70PI7_9CLOS
Length = 2475
Score = 60.1 bits (144), Expect = 1e-07
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+ T+A + YNL D V+ + SGDDSLI + L + +
Sbjct: 2296 QRRTGSPNTWLSNTLTTMAVVLSSYNLDD--VELFLVSGDDSLIFSKYPLDNRTQRM-NV 2352
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221
F +EAKF N P+ CSKF+I + +P+P++ +L S V+ ++ W
Sbjct: 2353 DFGMEAKFIENSVPYFCSKFII-----QDRGRIKVIPDPVRFFEKL-SVPVSYQDYENWN 2406
Query: 220 -----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101
+ S+ D + F+ V M + RY P++ AAL
Sbjct: 2407 MIRERFISYKDLMVEFDYDTSCMLVDVMVSKRY-SLPNMASYAAL 2450
[187][TOP]
>UniRef100_B7FAV3 RNA dependent RNA polymerase (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 10 RepID=B7FAV3_9CLOS
Length = 515
Score = 60.1 bits (144), Expect = 1e-07
Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPN-VKFVVASGDDSLIGTVEELPRDQEFLFT 398
QRRTG A T++GNTI+ +C + ++PN +GDDSL+ + P ++
Sbjct: 332 QRRTGAANTWIGNTIIN---MCLLSQSVNPNEFSACCFAGDDSLL-IYKNKPNIAFDVYE 387
Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224
T F+ + K F + C KFLI+ G K + VP+PLKL ++LG ++ D + E
Sbjct: 388 TKFDFDVKFFDCAAMYFCGKFLIS----DGLKTHV-VPDPLKLFVKLGKERPPEDKVLVE 442
Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
++S+ D F ++ V+ + A +Y R + Y
Sbjct: 443 NWRSFYDVTKAFANNTVLEKLVDQFALKYSRSHNAY 478
[188][TOP]
>UniRef100_Q5G7G6 Polymerase (Fragment) n=1 Tax=Mint virus 1 RepID=Q5G7G6_9CLOS
Length = 459
Score = 59.7 bits (143), Expect = 2e-07
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G + T++GN++VTL L Y + + + FV SGDDSL+ + + E +
Sbjct: 250 QRRSGASNTWIGNSVVTLGVLSMYYRVDELSALFV--SGDDSLMYSRSPIRNHAEAICIE 307
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK---VNADIFD 227
E KF + P+ CSKF++ G K VP+P KL+++LG+ + + D+F
Sbjct: 308 T-GFETKFLSPSVPYFCSKFVVH----CGHKTYF-VPDPFKLMVKLGAVRNELTDKDLF- 360
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA--ALESLGKIFAS--KTLCK 59
E + S+ D F+D V+ + + +Y + + L A ++ L F+S K K
Sbjct: 361 EVFTSFRDLTKDFDDERVLVKLNYLLESKYGKVSAFALPALRSIHCLASNFSSFVKLFDK 420
Query: 58 EC 53
C
Sbjct: 421 SC 422
[189][TOP]
>UniRef100_UPI000019AB7D polyprotein n=2 Tax=Cucurbit yellow stunting disorder virus
RepID=UPI000019AB7D
Length = 2482
Score = 59.3 bits (142), Expect = 2e-07
Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VT+ L YNL D + ++ SGDDSLI + + LP +
Sbjct: 2303 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2359
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
F EAKF N P+ CSK++ T V VP+ ++ +L + +D I
Sbjct: 2360 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2414
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
E + S+ D + + V + R+ P + AAL + +FA+ ++
Sbjct: 2415 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2472
Query: 52 LFNEKHESNV 23
LF+E+ N+
Sbjct: 2473 LFDERFSVNI 2482
[190][TOP]
>UniRef100_Q8JUU9 1b (Fragment) n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=Q8JUU9_9CLOS
Length = 514
Score = 59.3 bits (142), Expect = 2e-07
Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VT+ L YNL D + ++ SGDDSLI + + LP +
Sbjct: 335 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 391
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
F EAKF N P+ CSK++ T V VP+ ++ +L + +D I
Sbjct: 392 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 446
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
E + S+ D + + V + R+ P + AAL + +FA+ ++
Sbjct: 447 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 504
Query: 52 LFNEKHESNV 23
LF+E+ N+
Sbjct: 505 LFDERFSVNI 514
[191][TOP]
>UniRef100_Q70UT1 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=Q70UT1_9CLOS
Length = 2483
Score = 59.3 bits (142), Expect = 2e-07
Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VT+ L YNL D + ++ SGDDSLI + + LP +
Sbjct: 2304 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2360
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
F EAKF N P+ CSK++ T V VP+ ++ +L + +D I
Sbjct: 2361 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2415
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
E + S+ D + + V + R+ P + AAL + +FA+ ++
Sbjct: 2416 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2473
Query: 52 LFNEKHESNV 23
LF+E+ N+
Sbjct: 2474 LFDERFSVNI 2483
[192][TOP]
>UniRef100_A5JM40 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=A5JM40_9CLOS
Length = 2483
Score = 59.3 bits (142), Expect = 2e-07
Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VT+ L YNL D + ++ SGDDSLI + + LP +
Sbjct: 2304 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2360
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233
F EAKF N P+ CSK++ T V VP+ ++ +L + +D I
Sbjct: 2361 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2415
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
E + S+ D + + V + R+ P + AAL + +FA+ ++
Sbjct: 2416 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2473
Query: 52 LFNEKHESNV 23
LF+E+ N+
Sbjct: 2474 LFDERFSVNI 2483
[193][TOP]
>UniRef100_UPI00004A3B9A ORF 1b n=1 Tax=Strawberry pallidosis-associated virus
RepID=UPI00004A3B9A
Length = 505
Score = 58.5 bits (140), Expect = 4e-07
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTLA + Y+L D + ++ SGDDSLI + ++L +
Sbjct: 326 QRRTGSPNTWLSNTLVTLAMILTHYDLDD--IDLLLVSGDDSLIFSRKDLGNKANEI-NR 382
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230
F +EAKF N P+ CSKF+I G V+P P L + I L +V D+
Sbjct: 383 DFGMEAKFIMNSVPYFCSKFIIED---RGEIKVVPDPVRFFEKLSVPISLQDFQV-GDLL 438
Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D + ++ VI V + + RY
Sbjct: 439 RERFVSFKDLMIGYDSDAVIILVDNLISIRY 469
[194][TOP]
>UniRef100_Q6JGW4 ORF 1a/1b fusion polyprotein n=2 Tax=Strawberry pallidosis-associated
virus RepID=Q6JGW4_9CLOS
Length = 2451
Score = 58.5 bits (140), Expect = 4e-07
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 5/151 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTLA + Y+L D + ++ SGDDSLI + ++L +
Sbjct: 2272 QRRTGSPNTWLSNTLVTLAMILTHYDLDD--IDLLLVSGDDSLIFSRKDLGNKANEI-NR 2328
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230
F +EAKF N P+ CSKF+I G V+P P L + I L +V D+
Sbjct: 2329 DFGMEAKFIMNSVPYFCSKFIIED---RGEIKVVPDPVRFFEKLSVPISLQDFQV-GDLL 2384
Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D + ++ VI V + + RY
Sbjct: 2385 RERFVSFKDLMIGYDSDAVIILVDNLISIRY 2415
[195][TOP]
>UniRef100_Q001T5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato chlorosis
virus RepID=Q001T5_9CLOS
Length = 504
Score = 58.5 bits (140), Expect = 4e-07
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VT+ + VY+L D + + SGDDSLI + + L + +
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDLDD--IDLFLVSGDDSLIFSSKPLKNKTDEI-NR 381
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
F EAK N P+ CSK++I S + VP+P++ +L ++ +
Sbjct: 382 DFGFEAKMIENSVPYFCSKYII-----SDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTL 436
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E ++S+ D + F+ V A+ +RY
Sbjct: 437 MREKFRSYKDLMKDFDYDTTCVLVDALVCYRY 468
[196][TOP]
>UniRef100_C7B977 ORF 1a/1b fusion protein n=2 Tax=Tomato infectious chlorosis virus
RepID=C7B977_9CLOS
Length = 2394
Score = 58.5 bits (140), Expect = 4e-07
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+ TL L Y L D + ++ SGDDSLI + +LP +
Sbjct: 2215 QRRTGSPNTWLSNTLATLGMLMSFYKLED--IDLILVSGDDSLIFSRRKLPNVVGEI-NK 2271
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFD--- 227
F +EAK N + CSK++I S + VP+P++ +L S V D D
Sbjct: 2272 CFGMEAKLIENSVAYFCSKYII-----SDKGKIKVVPDPVRFFEKL-STPVRLDEIDSKL 2325
Query: 226 ---EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E Y S+ D + ++ + V A+ +R+
Sbjct: 2326 SLRERYISFKDLMRGYDLDGTVMMVDALVCYRH 2358
[197][TOP]
>UniRef100_A9YRU9 RNA dependent RNA polymerase (Fragment) n=2 Tax=Tomato chlorosis
virus RepID=A9YRU9_9CLOS
Length = 504
Score = 58.5 bits (140), Expect = 4e-07
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VT+ + VY+L D + + SGDDSLI + + L + +
Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDLDD--IDLFLVSGDDSLIFSSKPLKNKTDEI-NR 381
Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233
F EAK N P+ CSK++I S + VP+P++ +L ++ +
Sbjct: 382 DFGFEAKMIENSVPYFCSKYII-----SDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTL 436
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E ++S+ D + F+ V A+ +RY
Sbjct: 437 MREKFRSYKDLMKDFDYDTTCVLVDALVCYRY 468
[198][TOP]
>UniRef100_Q991N2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2
RepID=Q991N2_9CLOS
Length = 1980
Score = 58.2 bits (139), Expect = 5e-07
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG + T+LGNTIV + L +V + DPN FV SGDDSL+ + + + D F +
Sbjct: 1859 QRRTGGSNTWLGNTIVNMVSLAYVKD-FDPNT-FVCFSGDDSLVLSRDPIYFD-FFKLSL 1915
Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224
L+ K P P+ CSK+LI + + + VP+ KL+ +LG + A+ E
Sbjct: 1916 ELGLDVKLTPVATPYFCSKYLI-----NTEERIFIVPDIFKLVTKLGRVFARTKAEGL-E 1969
Query: 223 WYQSWIDTI 197
++S+ DTI
Sbjct: 1970 TFESFKDTI 1978
[199][TOP]
>UniRef100_C6FJ53 ORF1a/1b fusion polyprotein n=2 Tax=Lettuce chlorosis virus
RepID=C6FJ53_9CLOS
Length = 2495
Score = 58.2 bits (139), Expect = 5e-07
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL L Y+L D ++ ++ SGDDSLI + +LP +
Sbjct: 2316 QRRTGSPNTWLSNTLVTLGILMSEYDLDD--IELILVSGDDSLIFSKHDLPNVTAEI-NR 2372
Query: 394 LFNLEAKFPHNQ-PFICSKFL 335
F EAKF N P+ CSKF+
Sbjct: 2373 DFGFEAKFLMNSVPYFCSKFI 2393
[200][TOP]
>UniRef100_B2BZW1 ORF1b n=1 Tax=Bean yellow disorder virus RepID=B2BZW1_9CLOS
Length = 521
Score = 57.8 bits (138), Expect = 6e-07
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG T+L NT+VTL L YNL D ++ ++ SGDDSLI + LP +
Sbjct: 342 QRRTGSPNTWLSNTLVTLGILMTEYNLDD--MELILVSGDDSLIFSKNPLPNVTAEI-NR 398
Query: 394 LFNLEAKFPHNQ-PFICSKFL 335
F EAKF N P+ CSKF+
Sbjct: 399 DFGFEAKFLMNSVPYFCSKFI 419
[201][TOP]
>UniRef100_Q9JAD3 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD3_9VIRU
Length = 1816
Score = 57.4 bits (137), Expect = 8e-07
Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 6/191 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401
+Q+++G+ TY NT A L + ++ KF++ GDDSLI ++L D
Sbjct: 1630 YQQKSGNCDTYGSNT--WSAALALLESMPLEKAKFMIFGGDDSLILFPKQLCIEDPCRRL 1687
Query: 400 TTLFNLEAK---FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADI 233
+L+N + K F HN C KFL+ + G+K P+P+KLL +LG K V+ +
Sbjct: 1688 ASLWNFDCKLFNFRHNM--FCGKFLLKI----GNKFKF-APDPMKLLTKLGRKDIVDGKL 1740
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGK-IFASKTLCKE 56
E + S D G + D+ ++ +A RY R + A L +L K IF K L
Sbjct: 1741 LSEIFVSMGDNYGSYRDYRILEQLAVAVQERY--RTNEDPTAMLITLKKYIFDFKLLAS- 1797
Query: 55 CLFNEKHESNV 23
LFN E V
Sbjct: 1798 -LFNYSGEFEV 1807
[202][TOP]
>UniRef100_Q9J942 194 kDa protein n=2 Tax=Tobacco rattle virus RepID=Q9J942_9VIRU
Length = 1707
Score = 57.4 bits (137), Expect = 8e-07
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
+Q+++GDA TY N+ TL L L V GDDSLI PR +F+
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563
Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
T +N E K F ++ P C KFL L S VP+P+K+L +LG K + +
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618
Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676
Query: 61 KECLFNEKHESNVKIKPRRV 2
LF + E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692
[203][TOP]
>UniRef100_Q9DL34 RNA-dependent RNA polymerase n=2 Tax=Tobacco rattle virus
RepID=Q9DL34_9VIRU
Length = 1707
Score = 57.4 bits (137), Expect = 8e-07
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
+Q+++GDA TY N+ TL L L V GDDSLI PR +F+
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563
Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
T +N E K F ++ P C KFL L S VP+P+K+L +LG K + +
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618
Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676
Query: 61 KECLFNEKHESNVKIKPRRV 2
LF + E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692
[204][TOP]
>UniRef100_Q8JU32 Putative replicase n=2 Tax=Tobacco rattle virus RepID=Q8JU32_9VIRU
Length = 1707
Score = 57.4 bits (137), Expect = 8e-07
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
+Q+++GDA TY N+ TL L L V GDDSLI PR +F+
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563
Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
T +N E K F ++ P C KFL L S VP+P+K+L +LG K + +
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618
Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676
Query: 61 KECLFNEKHESNVKIKPRRV 2
LF + E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692
[205][TOP]
>UniRef100_Q2XP15 RdRp (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q2XP15_9CLOS
Length = 475
Score = 57.4 bits (137), Expect = 8e-07
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ ++ SGDD LI + E++ +
Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDFLIYSSEKISNFSSQICLE 323
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS---KKVNADIFD 227
T F + P + P+ SKF++ +G+K VP+P KLL++LG+ K + ++F
Sbjct: 324 TGFETKFMSP-SVPYFSSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQIKLTDVELF- 376
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E + S+ D F D V+ + + +Y
Sbjct: 377 ELFSSFKDMTQDFGDQVVLEKLKLLVEPKY 406
[206][TOP]
>UniRef100_O56250 RNA polymerase n=1 Tax=Tobacco rattle virus RepID=O56250_9VIRU
Length = 1707
Score = 57.4 bits (137), Expect = 8e-07
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
+Q+++GDA TY N+ TL L L V GDDSLI PR +F+
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563
Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
T +N E K F ++ P C KFL L S VP+P+K+L +LG K + +
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618
Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676
Query: 61 KECLFNEKHESNVKIKPRRV 2
LF + E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692
[207][TOP]
>UniRef100_P05080 134 kDa protein n=2 Tax=Tobacco rattle virus RepID=194K_TRVSY
Length = 1707
Score = 57.4 bits (137), Expect = 8e-07
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
+Q+++GDA TY N+ TL L L V GDDSLI PR +F+
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563
Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
T +N E K F ++ P C KFL L S VP+P+K+L +LG K + +
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618
Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676
Query: 61 KECLFNEKHESNVKIKPRRV 2
LF + E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692
[208][TOP]
>UniRef100_Q70BW7 Replicase n=2 Tax=Tobacco rattle virus RepID=Q70BW7_9VIRU
Length = 1707
Score = 57.0 bits (136), Expect = 1e-06
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
+Q+++GDA TY N+ TL L L V GDDSLI PR +F+
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563
Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
T +N E K F ++ P C KFL L S VP+P+K+L +LG K + +
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618
Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676
Query: 61 KECLFNEKHESNVKIKPRRV 2
LF + E++ ++ P +V
Sbjct: 1677 --TLFRD--ENDKELNPAQV 1692
[209][TOP]
>UniRef100_Q0GK54 RdRp (Fragment) n=1 Tax=Strawberry chlorotic fleck associated virus
RepID=Q0GK54_9CLOS
Length = 469
Score = 57.0 bits (136), Expect = 1e-06
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G + T++GN++VTL + Y++ + + SGDDSLI + ++ F T
Sbjct: 249 QRRSGGSNTWIGNSLVTLGIIALYYDV--SKFRLLAISGDDSLIYSDNKIAN-----FAT 301
Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG--SKKVNAD 236
LE+ F + P+ CSKF++ +G+ V VP+P KL+++LG +K V +
Sbjct: 302 EICLESGFETKFMSPSVPYFCSKFVVQ----TGTNTVF-VPDPYKLMVKLGASNKFVTNE 356
Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
E Y S+ D + + V+ + + +Y
Sbjct: 357 GLFEVYTSFRDLTKDYGNQIVLERLKHLVEKKY 389
[210][TOP]
>UniRef100_B2BD48 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
wilt-associated virus 1 RepID=B2BD48_9CLOS
Length = 520
Score = 57.0 bits (136), Expect = 1e-06
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG A T++GNT++ + L ++ N V +GDDSLI + +P ++
Sbjct: 332 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPGVNFDVYDL 388
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADIFDEW 221
+ + K F + C KFLI S + +P+P K+ ++LG ++ V+ I E
Sbjct: 389 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKLGKERPVSDKILLEQ 443
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
+QS+ D + I + + A++++ P Y
Sbjct: 444 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 478
[211][TOP]
>UniRef100_A7DYV4 Putative 57-kDa polymerase (Fragment) n=1 Tax=Tobacco rattle virus
RepID=A7DYV4_9VIRU
Length = 500
Score = 57.0 bits (136), Expect = 1e-06
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
+Q+++GDA TY N+ TL L L V GDDSLI PR +F+
Sbjct: 303 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 356
Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
T +N E K F ++ P C KFL L S VP+P+K+L +LG K + +
Sbjct: 357 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 411
Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC
Sbjct: 412 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 469
Query: 61 KECLFNEKHESNVKIKPRRV 2
LF + E++ ++ P +V
Sbjct: 470 --TLFRD--ENDKELNPAQV 485
[212][TOP]
>UniRef100_P89202 Replicase small subunit n=1 Tax=Sunn-hemp mosaic virus
RepID=RDRP_SHMV
Length = 1629
Score = 57.0 bits (136), Expect = 1e-06
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELPR----- 419
+QR++GD T++GNTI+ ACLC + P K A GDDS+I LPR
Sbjct: 1457 YQRKSGDVTTFIGNTIIIAACLCSIL----PMEKVFKAGFCGDDSII----YLPRNLLYP 1508
Query: 418 DQEFLFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV- 245
D + + ++N EAK F + C ++ L + + +P+PLK++ +LG K +
Sbjct: 1509 DIQSVSNNMWNFEAKLFKKLHGYFCGRY-----XLRNGRYLRLLPDPLKIITKLGCKAIK 1563
Query: 244 NADIFDEWYQSWID 203
+ D +E+ S D
Sbjct: 1564 DWDHLEEFRISMFD 1577
[213][TOP]
>UniRef100_B2BD55 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
wilt-associated virus 1 RepID=B2BD55_9CLOS
Length = 520
Score = 56.6 bits (135), Expect = 1e-06
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG A T++GNT++ + L ++ N V +GDDSLI + +P ++
Sbjct: 332 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGIPGVNFDVYDL 388
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221
+ + K F + C KFLI S + +P+P K+ ++ G ++ D I E
Sbjct: 389 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 443
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
+QS+ D + I + + A++++ P Y
Sbjct: 444 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 478
[214][TOP]
>UniRef100_Q8QL61 RNA dependent RNA polymerase (Fragment) n=1 Tax=Olive leaf
yellowing-associated virus RepID=Q8QL61_9CLOS
Length = 337
Score = 56.2 bits (134), Expect = 2e-06
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRR+G A T+ GN ++TL L Y+ N V +GDDS++ + + + +
Sbjct: 110 QRRSGTANTFFGNCMITLMMLSLYYDFR--NFSAVAVAGDDSILFSKTPIVDHSDHMILD 167
Query: 394 LFNLEAKFPHNQP-FICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221
EAKF ++P + CS+F+ L + + VP+P K++++LG + + W
Sbjct: 168 -NGFEAKFLRDKPAYFCSRFI-----LFANDYIYFVPDPYKVIVKLGKPLTDVTVNGLWE 221
Query: 220 -YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137
Y S+ D N V+ +A T RY
Sbjct: 222 RYISFKDYTKYLNFETVVWHLAIATNIRY 250
[215][TOP]
>UniRef100_B2BD51 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
wilt-associated virus 1 RepID=B2BD51_9CLOS
Length = 413
Score = 56.2 bits (134), Expect = 2e-06
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG A T++GNT++ + L ++ N V +GDDSLI + +P ++
Sbjct: 225 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPGVNFDVYDL 281
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221
+ + K F + C KFLI S + +P+P K+ ++ G ++ D I E
Sbjct: 282 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 336
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
+QS+ D + I + + A++++ P Y
Sbjct: 337 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 371
[216][TOP]
>UniRef100_Q8V3A3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug
wilt-associated virus 1 RepID=Q8V3A3_9CLOS
Length = 525
Score = 55.8 bits (133), Expect = 2e-06
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395
QRRTG A T++GNT++ + L ++ N V +GDDSLI + +PR ++
Sbjct: 337 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPRVNFDVYDL 393
Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221
+ + K F + C KF ++ S + +P+P K+ ++ G ++ D I E
Sbjct: 394 KYEFDVKYFDCASKYFCGKF-----SIENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 448
Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116
+QS D + I + + A++++ P Y
Sbjct: 449 WQSLFDITEAYTSDANISKLVSSFANKWVSSPHAY 483
[217][TOP]
>UniRef100_Q91E49 Replicase large subunit n=2 Tax=Kyuri green mottle mosaic virus
RepID=Q91E49_9VIRU
Length = 1670
Score = 55.5 bits (132), Expect = 3e-06
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407
+QR++GD T++GNT + AC+ M P K AS GDDSLI L D +
Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MVPLSKCFKASFCGDDSLIYMPPNLEYPDIQA 1551
Query: 406 LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239
++N EAK F + C K++I SK + P+PLKL+ +LG+K + +
Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHSKGCIVYPDPLKLISKLGNKSLES 1603
[218][TOP]
>UniRef100_A2ID07 P349 (Fragment) n=1 Tax=Citrus tristeza virus RepID=A2ID07_9CLOS
Length = 264
Score = 55.5 bits (132), Expect = 3e-06
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Frame = -3
Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398
QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + + E
Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SRFELLLISGDDSLIYSRAPISNFSSEICLE 201
Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224
T F + P + P+ CSKF++ +G+K +P+P +LL++LG+ K+ D E
Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYQLLVKLGAPQYKLTDDELFE 255
Query: 223 WYQSWID 203
+ S+ D
Sbjct: 256 LFTSFKD 262
[219][TOP]
>UniRef100_Q9JGJ6 59-kDa readthrough protein (Fragment) n=1 Tax=Sorghum chlorotic
spot virus RepID=Q9JGJ6_9VIRU
Length = 507
Score = 55.1 bits (131), Expect = 4e-06
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 3/174 (1%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401
+Q+++G+ TY NT L L +F++ GDDSLI EE+ D
Sbjct: 321 YQQKSGNCDTYGSNTWSAALALLETMPL--EKAEFMIFGGDDSLILFPEEVVVEDPCRRL 378
Query: 400 TTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADIFD 227
+L+N + K F N C KFL+ + G + P+P+KL+ +LG K V+ +
Sbjct: 379 ASLWNFDCKLFSFNHNLFCGKFLLKI----GDRYRFS-PDPVKLMTKLGRKDIVDGQVLS 433
Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTL 65
E + S D + D ++ +AA RY R + AAL SL K + +L
Sbjct: 434 EIFVSIGDNYKSYRDFRILSALAAAVQERY--RTNEDALAALISLRKYISDFSL 485
[220][TOP]
>UniRef100_D0EWY6 194 kDa readthrough protein n=2 Tax=Tobacco rattle virus
RepID=D0EWY6_9VIRU
Length = 1707
Score = 54.7 bits (130), Expect = 5e-06
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 8/200 (4%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404
+Q+++GDA TY N+ TL L L V GDDSLI P+ +F
Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPLK--KAVMVTYGGDDSLIA----FPKGTQFTDP 1563
Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239
T +N E K F ++ P C KFL L S VP+P+K+L +LG K + +
Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618
Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62
E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC
Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676
Query: 61 KECLFNEKHESNVKIKPRRV 2
LF + E + ++ P +V
Sbjct: 1677 --TLFRD--EKDKELNPSQV 1692
[221][TOP]
>UniRef100_Q9JAD2 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD2_9VIRU
Length = 1816
Score = 54.3 bits (129), Expect = 7e-06
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 6/191 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401
+Q+++G+ TY NT A L + ++ KF++ GDDS I ++L D
Sbjct: 1630 YQQKSGNCDTYGSNT--WSAALALLESMPLEKAKFMIFGGDDSPILFPKQLCIEDPCRRL 1687
Query: 400 TTLFNLEAK---FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NADI 233
+L+N + K F HN C KFL+ + G+K P+P+KLL +LG K + + +
Sbjct: 1688 ASLWNFDCKLFNFRHNM--FCGKFLLKI----GNKFKF-APDPMKLLTKLGRKDIADGKL 1740
Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGK-IFASKTLCKE 56
E + S D G + D+ ++ +A RY R + A L +L K IF K L
Sbjct: 1741 LSEIFVSMGDNYGSYRDYRILEQLAVAVQERY--RTNEDPTAMLITLKKYIFDFKLLAS- 1797
Query: 55 CLFNEKHESNV 23
LFN E V
Sbjct: 1798 -LFNYSGEFEV 1807
[222][TOP]
>UniRef100_Q9DKW5 Replicase large subunit n=1 Tax=Cucumber fruit mottle mosaic virus
RepID=Q9DKW5_9VIRU
Length = 1666
Score = 53.9 bits (128), Expect = 9e-06
Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 5/194 (2%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVA-SGDDSLIGTVEELP-RDQEFL 404
+QR++GD T++GNT + AC V +++ + F A GDDSLI L D +
Sbjct: 1492 YQRKSGDVTTFIGNTFIIAAC---VASMVPLSRSFKAAFCGDDSLIYMPPNLEYNDIQST 1548
Query: 403 FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA-DIF 230
++N EAK + + C K++I + + P+PLKL+ +LG+K + + D
Sbjct: 1549 ANLVWNFEAKLYKKKYGYFCGKYVI-----HHANGCIVYPDPLKLISKLGNKSLESYDHL 1603
Query: 229 DEWYQSWIDTI-GVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53
+E+ S +D +FN + A+ H Y PS+ G FA +LCK
Sbjct: 1604 EEFRISLMDVAKPLFNAAYFHLLDDAI--HEYF--PSVG--------GSTFAISSLCK-Y 1650
Query: 52 LFNEKHESNVKIKP 11
L N++ ++ IKP
Sbjct: 1651 LSNKQLFGSLFIKP 1664
[223][TOP]
>UniRef100_Q911R4 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus
RepID=Q911R4_9VIRU
Length = 1670
Score = 53.9 bits (128), Expect = 9e-06
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407
+QR++GD T++GNT + AC+ M P + AS GDDSLI L D +
Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MIPLGRCFKASFCGDDSLIYMPPNLEYPDIQA 1551
Query: 406 LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239
++N EAK F + C K++I +K + P+PLKL+ +LG+K V +
Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHAKGCIVYPDPLKLISKLGNKSVES 1603
[224][TOP]
>UniRef100_Q5W5U1 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus
RepID=Q5W5U1_9VIRU
Length = 1670
Score = 53.9 bits (128), Expect = 9e-06
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Frame = -3
Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407
+QR++GD T++GNT + AC+ M P + AS GDDSLI L D +
Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MIPLGRCFKASFCGDDSLIYMPPNLEYPDIQA 1551
Query: 406 LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239
++N EAK F + C K++I +K + P+PLKL+ +LG+K V +
Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHAKGCIVYPDPLKLISKLGNKSVES 1603