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[1][TOP] >UniRef100_P03593 RNA-directed RNA polymerase 2A n=1 Tax=Alfalfa mosaic virus (strain 425 / isolate Leiden) RepID=ORF2A_AMVLE Length = 790 Score = 381 bits (979), Expect = e-104 Identities = 185/192 (96%), Positives = 187/192 (97%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDALTYLGNTIVTLACLCHVY+LMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT Sbjct: 585 FQRRTGDALTYLGNTIVTLACLCHVYDLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 644 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFNLEAKFPHNQPFICSKFLITMPT SG KVVLP+PNPLKLLIRLGSKKVNADIFDEWY Sbjct: 645 TLFNLEAKFPHNQPFICSKFLITMPTTSGGKVVLPIPNPLKLLIRLGSKKVNADIFDEWY 704 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 QSWID IG FNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFA KTLCKECLFNEK Sbjct: 705 QSWIDIIGGFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFAGKTLCKECLFNEK 764 Query: 37 HESNVKIKPRRV 2 HESNVKIKPRRV Sbjct: 765 HESNVKIKPRRV 776 [2][TOP] >UniRef100_Q91NQ3 Polymerase P2 n=1 Tax=Prune dwarf virus RepID=Q91NQ3_9BROM Length = 788 Score = 234 bits (597), Expect = 4e-60 Identities = 113/190 (59%), Positives = 141/190 (74%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRR GDA TYLGNTIVTLA LC+VY+L NV VVASGDDSLIG+ EL R E LF+ Sbjct: 564 YQRRAGDACTYLGNTIVTLAALCYVYDLRSSNVAMVVASGDDSLIGSYSELDRSFEHLFS 623 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+TMPT G K V+ VPNP KLLI+LG K + D FD+W+ Sbjct: 624 TLFNFEAKFPHNQPFICSKFLLTMPTKGGGKQVVAVPNPAKLLIKLGVKSMTVDKFDDWF 683 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 QSW+D I F+D+++I V +MT++RY+RRPS +L +A+ SL +FA+K CK+ LF Sbjct: 684 QSWLDLIHYFDDYYLIEVVCSMTSYRYIRRPSQFLVSAISSLKSLFANKKKCKDFLFPGL 743 Query: 37 HESNVKIKPR 8 + N + R Sbjct: 744 RDKNPDLSMR 753 [3][TOP] >UniRef100_Q5VI74 RNA-dependent RNA polymerase n=1 Tax=Fragaria chiloensis latent virus RepID=Q5VI74_9BROM Length = 786 Score = 229 bits (584), Expect = 1e-58 Identities = 112/177 (63%), Positives = 136/177 (76%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA+TYLGNT+VTLA L +VY+L DPNV VVASGDDSLIG+ L R +E L + Sbjct: 593 FQRRTGDAVTYLGNTVVTLAVLSYVYDLSDPNVLMVVASGDDSLIGSYRPLDRSREHLCS 652 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+TMPT SG + V+ VPNPLKLLI+LG + + D FD WY Sbjct: 653 TLFNFEAKFPHNQPFICSKFLLTMPTKSGGRRVVAVPNPLKLLIKLGIRNLQEDQFDAWY 712 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLF 47 SWID I FND H+I VA M ++RYLR+PS++L+ A+ S +FA+KT + LF Sbjct: 713 TSWIDLIHYFNDEHLISVVAEMCSYRYLRKPSMFLKPAMCSFNNVFANKTKLMKFLF 769 [4][TOP] >UniRef100_Q91NQ0 Polymerase p2 n=1 Tax=Prunus necrotic ringspot virus RepID=Q91NQ0_9BROM Length = 799 Score = 213 bits (541), Expect = 1e-53 Identities = 101/177 (57%), Positives = 131/177 (74%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNTI+TL+ L ++Y+L+DPNV FV+ASGDDSLIG+++ L R +EF F Sbjct: 578 YQRRTGDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKPLDRSEEFKFV 637 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPF+CSKFL +PT+SG K VL VPN LKL I+LG K + +FD WY Sbjct: 638 TLFNFEAKFPHNQPFVCSKFLCLLPTVSGGKKVLAVPNALKLNIKLGVKDLAPCVFDAWY 697 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLF 47 SW+D I F+++ V+ + +HRYLRR + Y E A+ + IF+SK C + LF Sbjct: 698 NSWLDLIWYFDNYLVVSTMKDYISHRYLRRQTCYQEGAMLAYRTIFSSKEKCLKSLF 754 [5][TOP] >UniRef100_Q9QGG9 Putative polymerase n=1 Tax=Apple mosaic virus RepID=Q9QGG9_9BROM Length = 875 Score = 207 bits (527), Expect = 5e-52 Identities = 97/182 (53%), Positives = 130/182 (71%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +Q RTGDA TYL NTI+TL+ L ++Y+L+DPN+ FV+ASGDDSLIG+ L RD EF FT Sbjct: 630 YQPRTGDACTYLANTIITLSALAYMYDLLDPNITFVIASGDDSLIGSRVPLDRDDEFKFT 689 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPF+CSKFL +PT G K V+ VPN LKL I+LG K ++ FD WY Sbjct: 690 TLFNFEAKFPHNQPFVCSKFLCLVPTTDGGKKVVAVPNALKLNIKLGVKDLSPLTFDSWY 749 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 +SW+D I F+++ ++ + +HRYLR+P+++ E A+ + G IFA+K C +F Sbjct: 750 ESWLDLIWYFDNYLIVSTMKDYLSHRYLRKPTMFQEGAMLAYGSIFANKEKCLRSVFGIS 809 Query: 37 HE 32 E Sbjct: 810 SE 811 [6][TOP] >UniRef100_O41891 Putative polymerase (Fragment) n=1 Tax=Citrus variegation virus RepID=O41891_9BROM Length = 338 Score = 207 bits (527), Expect = 5e-52 Identities = 105/187 (56%), Positives = 129/187 (68%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+L DPN+ FV+ASGDDSLIG+V ELPR E LFT Sbjct: 80 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFVIASGDDSLIGSVNELPRGSEDLFT 139 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 SW+D I F D V VA++ A+R RR S+YL +AL SL FA+K K ++ Sbjct: 200 TSWLDVIYYFRDSRVCEKVASLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYHLT 259 Query: 37 HESNVKI 17 + +KI Sbjct: 260 EQECLKI 266 [7][TOP] >UniRef100_A5JVP5 Putative viral polymerase n=1 Tax=Citrus variegation virus RepID=A5JVP5_9BROM Length = 790 Score = 207 bits (527), Expect = 5e-52 Identities = 105/187 (56%), Positives = 129/187 (68%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+L DPN+ FV+ASGDDSLIG+V ELPR E LFT Sbjct: 491 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFVIASGDDSLIGSVNELPRGSEDLFT 550 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y Sbjct: 551 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 610 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 SW+D I F D V VA++ A+R RR S+YL +AL SL FA+K K ++ Sbjct: 611 TSWLDVIYYFRDSRVCEKVASLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYHLT 670 Query: 37 HESNVKI 17 + +KI Sbjct: 671 EQECLKI 677 [8][TOP] >UniRef100_Q9IMN3 Polymerase 2a (Fragment) n=1 Tax=Hydrangea mosaic virus RepID=Q9IMN3_9BROM Length = 338 Score = 206 bits (524), Expect = 1e-51 Identities = 104/187 (55%), Positives = 129/187 (68%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+L DPN+ F++ASGDDSLIG+V ELPR E LFT Sbjct: 80 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 139 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 QSW+D I F D V VA + A+R RR S+YL +AL SL FA+ K ++ Sbjct: 200 QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 259 Query: 37 HESNVKI 17 + ++KI Sbjct: 260 EQESLKI 266 [9][TOP] >UniRef100_Q88167 Polymerase n=1 Tax=Elm mottle virus RepID=Q88167_9BROM Length = 789 Score = 206 bits (524), Expect = 1e-51 Identities = 104/187 (55%), Positives = 129/187 (68%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+L DPN+ F++ASGDDSLIG+V ELPR E LFT Sbjct: 490 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 549 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y Sbjct: 550 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 609 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 QSW+D I F D V VA + A+R RR S+YL +AL SL FA+ K ++ Sbjct: 610 QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 669 Query: 37 HESNVKI 17 + ++KI Sbjct: 670 EQESLKI 676 [10][TOP] >UniRef100_O11878 Polymerase (Fragment) n=1 Tax=Elm mottle virus RepID=O11878_9BROM Length = 338 Score = 206 bits (524), Expect = 1e-51 Identities = 104/187 (55%), Positives = 129/187 (68%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+L DPN+ F++ASGDDSLIG+V ELPR E LFT Sbjct: 80 FQRRTGDANTYLGNTLVTLICLARVYDLCDPNITFIIASGDDSLIGSVAELPRGPEDLFT 139 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQFQALDDLY 199 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 QSW+D I F D V VA + A+R RR S+YL +AL SL FA+ K ++ Sbjct: 200 QSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANIKKFKWLCYHLT 259 Query: 37 HESNVKI 17 + ++KI Sbjct: 260 EQESLKI 266 [11][TOP] >UniRef100_O41889 Putative polymerase (Fragment) n=1 Tax=Asparagus virus 2 RepID=O41889_9BROM Length = 338 Score = 204 bits (518), Expect = 5e-51 Identities = 104/187 (55%), Positives = 129/187 (68%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+L +PN+ FV+ASGDDSLIG+V+ELPR E LFT Sbjct: 80 FQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVDELPRGPEDLFT 139 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y Sbjct: 140 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 199 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 SW+D I F D V VA++ A R RR S+YL +AL SL FA+K K ++ Sbjct: 200 TSWLDVIYYFRDSRVCEKVASLCAFRQTRRSSMYLLSALLSLPSRFANKKKFKWLCYHLT 259 Query: 37 HESNVKI 17 + +KI Sbjct: 260 EQECLKI 266 [12][TOP] >UniRef100_B8RCA4 Polymerase n=1 Tax=Asparagus virus 2 RepID=B8RCA4_9BROM Length = 790 Score = 204 bits (518), Expect = 5e-51 Identities = 104/187 (55%), Positives = 129/187 (68%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+L +PN+ FV+ASGDDSLIG+V+ELPR E LFT Sbjct: 491 FQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVDELPRGPEDLFT 550 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y Sbjct: 551 TLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 610 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 SW+D I F D V VA++ A R RR S+YL +AL SL FA+K K ++ Sbjct: 611 TSWLDVIYYFRDSRVCEKVASLCAFRQTRRSSMYLLSALLSLPSRFANKKKFKWLCYHLT 670 Query: 37 HESNVKI 17 + +KI Sbjct: 671 EQECLKI 677 [13][TOP] >UniRef100_Q66107 Polymerase n=1 Tax=Citrus leaf rugose virus RepID=Q66107_9BROM Length = 832 Score = 202 bits (514), Expect = 2e-50 Identities = 106/193 (54%), Positives = 129/193 (66%), Gaps = 1/193 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+L DP + FV+ASGDDSLIG+VEELPR E LFT Sbjct: 495 FQRRTGDANTYLGNTLVTLICLARVYDLCDPKITFVIASGDDSLIGSVEELPRAPEHLFT 554 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFN EAKFPHNQPFICSK L+++ + G + V+ VPNP KLLIR+G + D+ Y Sbjct: 555 SLFNFEAKFPHNQPFICSKILVSVDLVCGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 614 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCK-ECLFNE 41 SW+D I F D V VA + A+R RR S+YL +AL SL FA+K K C Sbjct: 615 TSWLDVIYYFRDSRVCEKVADLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKLLCYHLT 674 Query: 40 KHESNVKIKPRRV 2 + E K KP + Sbjct: 675 EEECLRKAKPSSI 687 [14][TOP] >UniRef100_Q99HR0 Putative polymerase p2 n=1 Tax=Tulare apple mosaic virus RepID=Q99HR0_9BROM Length = 809 Score = 199 bits (506), Expect = 1e-49 Identities = 101/186 (54%), Positives = 124/186 (66%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL CL VY+ DP + FV+ASG DSL+G+VEELPR E LFT Sbjct: 490 FQRRTGDANTYLGNTLVTLMCLARVYDSCDPKITFVIASGADSLLGSVEELPRTPEHLFT 549 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFN EAKFPHNQPFICSKFL+++ G + V+ VPNP KLLIR+G + D+ Y Sbjct: 550 SLFNFEAKFPHNQPFICSKFLVSVDLADGGREVIAVPNPAKLLIRMGRRDCQYQALDDLY 609 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 SW+D I F D V VA + A+R RR S+YL +AL SL FA+ K +N Sbjct: 610 NSWLDVIYYFRDSRVCEKVAELCAYRQTRRSSMYLLSALLSLPSCFANLKKFKRLCYNLT 669 Query: 37 HESNVK 20 E +K Sbjct: 670 EEECLK 675 [15][TOP] >UniRef100_B7T2J4 Polymerase n=1 Tax=Lilac ring mottle virus RepID=B7T2J4_9BROM Length = 791 Score = 195 bits (495), Expect = 2e-48 Identities = 99/192 (51%), Positives = 128/192 (66%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA+TYLGNTIVTL CL VY+L ++ FVVASGDDSLIG++ ELPRD E LF Sbjct: 477 YQRRTGDAVTYLGNTIVTLICLARVYDLNSSDITFVVASGDDSLIGSLHELPRDSESLFV 536 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFN EAKFPHNQPFICSKFL+ + G + V+ VPNP KLLIR+G K E + Sbjct: 537 SLFNFEAKFPHNQPFICSKFLVAVDVEGGRREVISVPNPAKLLIRMGKKDCQYQDLGELF 596 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNEK 38 SW+D + F D V R VA + A+R R PS+YLEAAL +L F+++ ++ Sbjct: 597 ISWLDVVKYFRDSEVCRKVADLCAYRQKRGPSMYLEAALLALPVCFSNRKKFLNICYSLT 656 Query: 37 HESNVKIKPRRV 2 ++ +K R+ Sbjct: 657 NDDCLKYSDLRI 668 [16][TOP] >UniRef100_B9VV82 p2 protein (Fragment) n=1 Tax=Bacopa chlorosis virus RepID=B9VV82_9BROM Length = 457 Score = 189 bits (479), Expect = 2e-46 Identities = 104/204 (50%), Positives = 131/204 (64%), Gaps = 12/204 (5%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL+ L +VY+L DPNV FV ASGDDSLIGT+E LPRD+E L Sbjct: 177 FQRRTGDACTYLGNTLVTLSVLSYVYDLSDPNVLFVAASGDDSLIGTLEPLPRDKEDLCV 236 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFNLE KFPHNQPF+CSKFL+ + GS+ VL VPNPLKLL +LG K + + D+ Y Sbjct: 237 SLFNLETKFPHNQPFLCSKFLLVVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDVY 296 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK--------- 71 QS D + VF D + R VA + R R+ L+LE+AL SL + A++ Sbjct: 297 QSLCDIVWVFEDADICRRVAELAEFRQFKGRKQCLFLESALLSLPSLVANRLKFIRRTIN 356 Query: 70 -TLCKECLFNEKHESNVKIKPRRV 2 K C+ NE + + RV Sbjct: 357 LESSKACIRNEVYSDLIACNVSRV 380 [17][TOP] >UniRef100_Q5XPM6 RdRp n=1 Tax=Strawberry necrotic shock virus RepID=Q5XPM6_9BROM Length = 803 Score = 184 bits (466), Expect = 6e-45 Identities = 100/197 (50%), Positives = 128/197 (64%), Gaps = 12/197 (6%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNT+VTL+ L +VY+L PN+ FV ASGDDSLIG+ + LPRD+E L Sbjct: 518 YQRRTGDACTYLGNTLVTLSVLSYVYDLSSPNILFVAASGDDSLIGSTQPLPRDKEDLCV 577 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFN E KFPHNQPFICSKFL+ + GSK VL VPNPLKLL +LG K + + D++Y Sbjct: 578 SLFNFETKFPHNQPFICSKFLLVVECDDGSKEVLAVPNPLKLLQKLGPKTLQVTMIDDYY 637 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK--------- 71 QS D + VF D + R VA + R RR L+LE+AL SL + A++ Sbjct: 638 QSLCDILWVFEDADICRRVAELAEFRCFKGRRHCLFLESALLSLPSLVANRLKFLRRTIN 697 Query: 70 -TLCKECLFNEKHESNV 23 K C+ N+ H + V Sbjct: 698 LESSKACIRNDVHSNLV 714 [18][TOP] >UniRef100_P89678 Putative viral polymerase n=1 Tax=Tobacco streak virus RepID=P89678_9BROM Length = 800 Score = 184 bits (466), Expect = 6e-45 Identities = 93/171 (54%), Positives = 123/171 (71%), Gaps = 2/171 (1%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG++E LPR++E L Sbjct: 520 YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSIEPLPREKEDLCV 579 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFN E KFPHNQPFICSKFL+ + GS+ VL VPNPLKLL +LG K + + D++Y Sbjct: 580 SLFNFETKFPHNQPFICSKFLLVVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDYY 639 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLR--RPSLYLEAALESLGKIFASK 71 QS D + VFND V R A + +R + + L+LE+AL SL + A++ Sbjct: 640 QSLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANR 690 [19][TOP] >UniRef100_B7TX63 2a protein n=1 Tax=Tobacco streak virus RepID=B7TX63_9BROM Length = 795 Score = 183 bits (465), Expect = 7e-45 Identities = 93/171 (54%), Positives = 123/171 (71%), Gaps = 2/171 (1%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG++E LPR++E L Sbjct: 515 YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSIEPLPREKEDLCV 574 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFN E KFPHNQPFICSKFL+ + GS+ VL VPNPLKLL +LG K + + D++Y Sbjct: 575 SLFNFETKFPHNQPFICSKFLLIVECDDGSEEVLAVPNPLKLLQKLGPKNLQVTVLDDYY 634 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLR--RPSLYLEAALESLGKIFASK 71 QS D + VFND V R A + +R + + L+LE+AL SL + A++ Sbjct: 635 QSLCDILWVFNDADVCRRTAELAEYRRFKGTKKCLFLESALLSLPSLVANR 685 [20][TOP] >UniRef100_Q6JE41 P2 protein n=1 Tax=Humulus japonicus latent virus RepID=Q6JE41_9BROM Length = 853 Score = 182 bits (463), Expect = 1e-44 Identities = 98/184 (53%), Positives = 126/184 (68%), Gaps = 1/184 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TYLGNT+VTL LCHVY+L D NV VVASGDD LIG+ E+L + +E+L + Sbjct: 644 FQRRTGDACTYLGNTLVTLCVLCHVYDLGDANVLSVVASGDDCLIGSYEKLDQSREYLCS 703 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 TLFN EAKFP+NQPFICSKFLI + G + V+ VPNP+KLLI+LGS K+N + FDEW+ Sbjct: 704 TLFNFEAKFPYNQPFICSKFLIIAEMMDGREEVIAVPNPIKLLIKLGS-KLNPEDFDEWF 762 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFAS-KTLCKECLFNE 41 +W D I F + H++ + + R R + L ALES +F S K + +E E Sbjct: 763 LAWRDHIHYFQNAHIVDQIVDLVEVRTGVRNTQCLRLALESFPHVFRSKKAVMREFFCME 822 Query: 40 KHES 29 + ES Sbjct: 823 EIES 826 [21][TOP] >UniRef100_Q2QF34 p2 protein n=1 Tax=Blackberry chlorotic ringspot virus RepID=Q2QF34_9BROM Length = 804 Score = 182 bits (463), Expect = 1e-44 Identities = 94/171 (54%), Positives = 122/171 (71%), Gaps = 2/171 (1%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG+++ LPRD+E L Sbjct: 519 YQRRTGDACTYLGNTLVTLSVLSYVYDLSNPNISFVAASGDDSLIGSLQPLPRDKEDLCV 578 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFN E KFPHNQPFICSKFL+ + G+K VL VPNPLKLL +LG K + + D++Y Sbjct: 579 SLFNFETKFPHNQPFICSKFLLVVECDDGTKEVLAVPNPLKLLQKLGPKTMQVTMIDDYY 638 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71 QS D + VF D V R VA + R R+ L+LE+AL SL + A++ Sbjct: 639 QSLCDILWVFEDADVCRRVAELAEFRAFKGRKKCLFLESALLSLPSLVANR 689 [22][TOP] >UniRef100_O57162 Putative polymerase n=1 Tax=Spinach latent virus RepID=O57162_9BROM Length = 797 Score = 177 bits (450), Expect = 4e-43 Identities = 95/187 (50%), Positives = 123/187 (65%), Gaps = 1/187 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQ-EFLF 401 +QRRTGDA TYLGNT+VTL CL VY+L +PN+ FV+ASGDDSLIG+VEELPR EF++ Sbjct: 490 YQRRTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVEELPRGPGEFIY 549 Query: 400 TTLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 + N EAKFPHNQPFI K L+++ G + V+ VPNP KLLI +G + D+ Sbjct: 550 NPV-NFEAKFPHNQPFIWLKVLVSVDLEDGGREVIAVPNPAKLLIGMGRRDCQYQALDDL 608 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41 YQSW+D I F D V VA + A+R RR S+YL +AL SL FA+K K + Sbjct: 609 YQSWLDVIYYFRDARVCEKVADLCAYRQTRRSSMYLLSALLSLPSCFANKKKFKWLCYRL 668 Query: 40 KHESNVK 20 + + +K Sbjct: 669 REQGCLK 675 [23][TOP] >UniRef100_Q6RK13 P2 protein n=1 Tax=Parietaria mottle virus RepID=Q6RK13_9BROM Length = 805 Score = 177 bits (449), Expect = 5e-43 Identities = 88/171 (51%), Positives = 122/171 (71%), Gaps = 2/171 (1%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNT+VTL+ L +VY+L P++ FV ASGDDSLIG++ LPRD+E L Sbjct: 526 YQRRTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 585 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFNLE KFPHNQPF+CSKFL+ + G++ VL VPNPLK+L ++G K + + D++Y Sbjct: 586 SLFNLETKFPHNQPFLCSKFLLVVECDDGTEEVLAVPNPLKILQKMGPKNLQVTVLDDYY 645 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71 QS D + VF D + R VA + +R +R ++LE+AL SL + A++ Sbjct: 646 QSLCDILWVFEDADICRRVAQLAEYRQFKGKRSCVFLESALLSLPSLVANR 696 [24][TOP] >UniRef100_C7T304 p2 protein n=1 Tax=Parietaria mottle virus RepID=C7T304_9BROM Length = 806 Score = 176 bits (447), Expect = 9e-43 Identities = 87/171 (50%), Positives = 122/171 (71%), Gaps = 2/171 (1%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNT+VTL+ L +VY+L P++ FV ASGDDSLIG++ LPRD+E L Sbjct: 526 YQRRTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 585 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEWY 218 +LFNLE KFPHNQPF+CSKFL+ + G++ VL VPNPLK+L ++G K + + D++Y Sbjct: 586 SLFNLETKFPHNQPFLCSKFLLVVECDDGTEEVLAVPNPLKILQKMGPKNLQVTVLDDYY 645 Query: 217 QSWIDTIGVFNDHHVIRCVAAMTAHRYL--RRPSLYLEAALESLGKIFASK 71 QS D + VF D + R VA + +R ++ ++LE+AL SL + A++ Sbjct: 646 QSLCDILWVFEDADICRRVAQLAEYRQFKGKKKCIFLESALLSLPSLVANR 696 [25][TOP] >UniRef100_Q997A3 Putative polymerase p2 n=1 Tax=American plum line pattern virus RepID=Q997A3_9BROM Length = 740 Score = 164 bits (416), Expect = 3e-39 Identities = 86/184 (46%), Positives = 117/184 (63%), Gaps = 1/184 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEEL-PRDQEFLF 401 +QRRTGDA TYLGNT+VTL L ++Y+L PNV VVASGDDSLIGT++ L PRD+E Sbjct: 534 YQRRTGDACTYLGNTLVTLCTLSYIYDLTSPNVGLVVASGDDSLIGTIKHLLPRDKEQFC 593 Query: 400 TTLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +TLFN E KFPHNQPFICSKFL+ +G + V P+P KLLIR+G K + F+ W Sbjct: 594 STLFNFETKFPHNQPFICSKFLVLDQLENGGERVNAYPDPYKLLIRVGVKFMTNTKFESW 653 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41 +S+ D+ ++ + V M +RY+R +L AL L + S+ + LF + Sbjct: 654 AESFFDSFSCYSTIESVSKVVEMAGYRYIRNSPKFLLPALHHLKYLCRSRDALRAGLFGK 713 Query: 40 KHES 29 ++ S Sbjct: 714 EYSS 717 [26][TOP] >UniRef100_Q6PNM5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine angular mosaic virus RepID=Q6PNM5_9BROM Length = 127 Score = 107 bits (267), Expect = 7e-22 Identities = 52/74 (70%), Positives = 58/74 (78%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNTIVTL L +VY+L P V FV ASGDDSLIG+ EELPR +E L Sbjct: 54 YQRRTGDACTYLGNTIVTLCVLSYVYDLSSPKVLFVTASGDDSLIGSTEELPRGKEELCV 113 Query: 397 TLFNLEAKFPHNQP 356 +LFN E KFPHNQP Sbjct: 114 SLFNFETKFPHNQP 127 [27][TOP] >UniRef100_A7DWF6 RNA dependent RNA polymerase (Fragment) n=1 Tax=Spinach latent virus RepID=A7DWF6_9BROM Length = 111 Score = 100 bits (248), Expect = 1e-19 Identities = 47/64 (73%), Positives = 55/64 (85%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QR+TGDA TYLGNT+VTL CL VY+L +PN+ FV+ASGDDSLIG+VEELPR E LFT Sbjct: 47 YQRKTGDANTYLGNTLVTLICLARVYDLCNPNITFVIASGDDSLIGSVEELPRGPEDLFT 106 Query: 397 TLFN 386 TLFN Sbjct: 107 TLFN 110 [28][TOP] >UniRef100_A7DWF5 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prunus necrotic ringspot virus RepID=A7DWF5_9BROM Length = 111 Score = 96.3 bits (238), Expect = 2e-18 Identities = 43/64 (67%), Positives = 55/64 (85%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNTI+TL+ L ++Y+L+DPNV FV+ASGDDSLIG+++ L R +EF F Sbjct: 47 YQRRTGDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKPLDRSEEFKFV 106 Query: 397 TLFN 386 TLFN Sbjct: 107 TLFN 110 [29][TOP] >UniRef100_A7DWF2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Apple mosaic virus RepID=A7DWF2_9BROM Length = 111 Score = 95.9 bits (237), Expect = 2e-18 Identities = 44/64 (68%), Positives = 54/64 (84%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNTI+TL+ L ++Y+L+DPN+ FV+ASGDDSLIG+ L RD EF FT Sbjct: 47 YQRRTGDACTYLGNTIITLSALAYMYDLLDPNITFVIASGDDSLIGSRVPLDRDDEFKFT 106 Query: 397 TLFN 386 TLFN Sbjct: 107 TLFN 110 [30][TOP] >UniRef100_A7DWF4 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus RepID=A7DWF4_9BROM Length = 110 Score = 92.0 bits (227), Expect = 3e-17 Identities = 46/64 (71%), Positives = 51/64 (79%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTGDA TYLGNTIVTLA LC+VY+L NV VVASGDDSLIG+ EL R E LF+ Sbjct: 46 YQRRTGDACTYLGNTIVTLAALCYVYDLQSSNVAMVVASGDDSLIGSYSELDRRFEHLFS 105 Query: 397 TLFN 386 TLFN Sbjct: 106 TLFN 109 [31][TOP] >UniRef100_A7DWF7 RNA dependent RNA polymerase (Fragment) n=1 Tax=Tobacco streak virus RepID=A7DWF7_9BROM Length = 111 Score = 87.0 bits (214), Expect = 9e-16 Identities = 41/64 (64%), Positives = 53/64 (82%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QR+TGDA TYLGNT+VTL+ L +VY+L +PN+ FV ASGDDSLIG+ E LPR++E L Sbjct: 47 YQRKTGDACTYLGNTLVTLSVLSYVYDLSNPNILFVAASGDDSLIGSREPLPREKEDLCV 106 Query: 397 TLFN 386 +LFN Sbjct: 107 SLFN 110 [32][TOP] >UniRef100_A7DWF3 RNA dependent RNA polymerase (Fragment) n=1 Tax=Parietaria mottle virus RepID=A7DWF3_9BROM Length = 111 Score = 85.5 bits (210), Expect = 3e-15 Identities = 41/65 (63%), Positives = 52/65 (80%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QR TGDA TYLGNT+VTL+ L +VY+L P++ FV ASGDDSLIG++ LPRD+E L Sbjct: 47 YQRLTGDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCV 106 Query: 397 TLFNL 383 +LFNL Sbjct: 107 SLFNL 111 [33][TOP] >UniRef100_P29035 RNA-directed RNA polymerase 2A n=2 Tax=Tomato aspermy virus RepID=ORF2A_TAV Length = 828 Score = 84.0 bits (206), Expect = 8e-15 Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 6/188 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT++ Y+ ++ SGDDSL G + P LFT Sbjct: 576 FQRRTGDAFTYFGNTLVTMSMFAWCYD--TSQFDKLIFSGDDSL-GFSIKAPVGDPSLFT 632 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDE- 224 +LFN+EAK + P+ICSKFL+T VP+PL+ + RLGSKK+ D D Sbjct: 633 SLFNMEAKVMEPSVPYICSKFLLT----DDFGNTFSVPDPLREIQRLGSKKIPLDEDDRS 688 Query: 223 ---WYQSWIDTIGVFND-HHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKE 56 + S++D + N + ++ R+ + L + K A+ KE Sbjct: 689 LHAHFMSFVDRLKFLNHMNQTSMTQLSLFYEMKYRKSGDDILLVLGAFNKYTANFNAYKE 748 Query: 55 CLFNEKHE 32 ++EK + Sbjct: 749 LYYSEKQQ 756 [34][TOP] >UniRef100_Q8JW07 2a protein n=1 Tax=Spring beauty latent virus RepID=Q8JW07_9BROM Length = 831 Score = 82.8 bits (203), Expect = 2e-14 Identities = 50/115 (43%), Positives = 76/115 (66%), Gaps = 1/115 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + +L + F SGDDSLI + ++L D E +F+ Sbjct: 542 FQRRTGDAFTYFGNTLVTMAMIAYTVDLSEATAIF---SGDDSLIISDKKLELDTE-VFS 597 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236 +LFN+E K + P+ICSKFL+ T +G+ ++ +P+PL+ L R+ +K+ D Sbjct: 598 SLFNMEIKVMDPSVPYICSKFLV--ETENGN--LVSIPDPLRELQRMAKRKILKD 648 [35][TOP] >UniRef100_Q9JFY6 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9JFY6_9BROM Length = 857 Score = 82.4 bits (202), Expect = 2e-14 Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT Sbjct: 571 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSKLPPVGDPSKFT 627 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 628 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 683 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 684 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 742 Query: 58 ECLFNEKHE 32 E F+++ + Sbjct: 743 ELYFSDRRQ 751 [36][TOP] >UniRef100_P28727 RNA-directed RNA polymerase 2A n=1 Tax=Peanut stunt virus (strain J) RepID=ORF2A_PSVJ Length = 834 Score = 82.4 bits (202), Expect = 2e-14 Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 8/188 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671 Query: 220 Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62 Y S++D + HH + + +Y ++ A+L K + ++ Sbjct: 672 YLKAHFMSFVDRLKFLPRMTHHTVAQLITFYEMKY-KKSGAECHASLGGFAKYSTNFSIY 730 Query: 61 KECLFNEK 38 KE +++ Sbjct: 731 KELYISDQ 738 [37][TOP] >UniRef100_C0MNB3 2a protein n=1 Tax=Gayfeather mild mottle virus RepID=C0MNB3_9BROM Length = 777 Score = 81.6 bits (200), Expect = 4e-14 Identities = 52/112 (46%), Positives = 66/112 (58%), Gaps = 1/112 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A C Y+ ++ SGDDSL + P FT Sbjct: 573 FQRRTGDAFTYFGNTLVTMALFCWCYD--TEQFDRMLFSGDDSLAFS-SIAPVGDPSKFT 629 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV 245 TLFN+EAK + P+ICSKFL+T VP+PL+ + RLGSKK+ Sbjct: 630 TLFNMEAKVMEPSVPYICSKFLLT----DEFGQTFSVPDPLREIQRLGSKKI 677 [38][TOP] >UniRef100_A7VN22 2a protein n=1 Tax=Peanut stunt virus RepID=A7VN22_9BROM Length = 834 Score = 81.6 bits (200), Expect = 4e-14 Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 8/188 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671 Query: 220 Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62 Y S++D + HH + + +Y ++ A L K + ++ Sbjct: 672 YLKAHFMSFVDRLKFLPRMTHHTVAQLITFYEMKY-KKSGAECHAMLGGFAKYSTNFSIY 730 Query: 61 KECLFNEK 38 KE +++ Sbjct: 731 KELYISDQ 738 [39][TOP] >UniRef100_Q66145 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain MB-8) RepID=ORF2A_CMVMB Length = 857 Score = 81.3 bits (199), Expect = 5e-14 Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++H+ Sbjct: 744 ELYYSDRHQ 752 [40][TOP] >UniRef100_Q0PP54 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=Q0PP54_9BROM Length = 858 Score = 80.9 bits (198), Expect = 7e-14 Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ S VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLSDEFGS----TFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [41][TOP] >UniRef100_C8KH76 2a protein n=1 Tax=Melandrium yellow fleck virus RepID=C8KH76_9BROM Length = 828 Score = 80.9 bits (198), Expect = 7e-14 Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 1/115 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A + + +++ P + + SGDDSL+ + + P +F Sbjct: 543 FQRRTGDAFTYFGNTIVTMAMMAYTFDMNLP--ELAIFSGDDSLL-VLNDKPSIDTDIFQ 599 Query: 397 TLFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236 LFN+E K + P++CSKFL + T GS V+ VP+PL+ + R+ +K+ D Sbjct: 600 RLFNMEVKIMEPSVPYVCSKFL--LETELGS--VVSVPDPLREIQRMSKRKILKD 650 [42][TOP] >UniRef100_B6V8E8 2a protein n=1 Tax=Cucumber mosaic virus RepID=B6V8E8_9BROM Length = 858 Score = 80.9 bits (198), Expect = 7e-14 Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E F+++ + Sbjct: 744 ELYFSDRRQ 752 [43][TOP] >UniRef100_A2TLI8 2a n=1 Tax=Cucumber mosaic virus RepID=A2TLI8_9BROM Length = 858 Score = 80.9 bits (198), Expect = 7e-14 Identities = 68/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSPFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E F+++ + Sbjct: 744 ELYFSDRRQ 752 [44][TOP] >UniRef100_Q9YJS0 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9YJS0_9BROM Length = 821 Score = 80.5 bits (197), Expect = 9e-14 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIVQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [45][TOP] >UniRef100_Q6T7E6 2a protein n=1 Tax=Peanut stunt virus RepID=Q6T7E6_9BROM Length = 845 Score = 80.5 bits (197), Expect = 9e-14 Identities = 52/119 (43%), Positives = 72/119 (60%), Gaps = 1/119 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL +++ + + + LFT Sbjct: 575 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRLLFSGDDSLAFSLKPIVGNPD-LFT 631 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDE 224 +LFN+EAK P+ICSKFL+T VP+PL+ L RLG+KK+ D D+ Sbjct: 632 SLFNIEAKNMEPPVPYICSKFLLT----DELGHTFSVPDPLRELQRLGTKKIPDDDSDD 686 [46][TOP] >UniRef100_Q6T7E1 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6T7E1_9BROM Length = 858 Score = 80.5 bits (197), Expect = 9e-14 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMDPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKHRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [47][TOP] >UniRef100_Q6T7D7 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6T7D7_9BROM Length = 858 Score = 80.5 bits (197), Expect = 9e-14 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMDPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKHRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [48][TOP] >UniRef100_Q83944 2a protein n=1 Tax=Olive latent virus 2 RepID=Q83944_OLV2 Length = 787 Score = 80.1 bits (196), Expect = 1e-13 Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 1/148 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 +QRRTG+ TY GNT+VT+ + VY L D + SGDD+LI T L + LF Sbjct: 566 YQRRTGNTATYFGNTLVTMIMMAEVYEL-DSLPFCGLFSGDDNLIVTDRPL-EGRVSLFP 623 Query: 397 TLFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +FN+EAK Q ++CSK+L T+ V PVP+P KLL + G+ + D++ Sbjct: 624 NMFNMEAKVMRPGQNYMCSKYLCTV-----DGRVTPVPDPFKLLKKAGA-SCPLEHLDDF 677 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 Y+S++D V + + AHRY Sbjct: 678 YESFLDYTKYLVRDEVRTLIPRLMAHRY 705 [49][TOP] >UniRef100_Q2MCK7 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus (strain Ri-8) RepID=Q2MCK7_9BROM Length = 857 Score = 80.1 bits (196), Expect = 1e-13 Identities = 67/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [50][TOP] >UniRef100_Q18PS2 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q18PS2_9BROM Length = 857 Score = 80.1 bits (196), Expect = 1e-13 Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLSPVGDPSKFT 628 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [51][TOP] >UniRef100_B6CWI1 2a protein n=1 Tax=Peanut stunt virus RepID=B6CWI1_9BROM Length = 834 Score = 80.1 bits (196), Expect = 1e-13 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDEA 671 Query: 220 Y 218 Y Sbjct: 672 Y 672 [52][TOP] >UniRef100_Q9IR76 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9IR76_9BROM Length = 857 Score = 79.7 bits (195), Expect = 1e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [53][TOP] >UniRef100_Q8V393 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8V393_9BROM Length = 840 Score = 79.7 bits (195), Expect = 1e-13 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [54][TOP] >UniRef100_Q8QME1 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QME1_9BROM Length = 840 Score = 79.7 bits (195), Expect = 1e-13 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [55][TOP] >UniRef100_Q8QME0 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QME0_9BROM Length = 840 Score = 79.7 bits (195), Expect = 1e-13 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [56][TOP] >UniRef100_Q8AZL7 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8AZL7_9BROM Length = 840 Score = 79.7 bits (195), Expect = 1e-13 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [57][TOP] >UniRef100_Q75ND6 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q75ND6_9BROM Length = 840 Score = 79.7 bits (195), Expect = 1e-13 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [58][TOP] >UniRef100_Q6L6Q8 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q6L6Q8_9BROM Length = 858 Score = 79.7 bits (195), Expect = 1e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [59][TOP] >UniRef100_Q202D7 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q202D7_9BROM Length = 858 Score = 79.7 bits (195), Expect = 1e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [60][TOP] >UniRef100_Q0PP56 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=Q0PP56_9BROM Length = 858 Score = 79.7 bits (195), Expect = 1e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [61][TOP] >UniRef100_B2ZHC4 2a protein n=1 Tax=Cucumber mosaic virus RepID=B2ZHC4_9BROM Length = 840 Score = 79.7 bits (195), Expect = 1e-13 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [62][TOP] >UniRef100_A6YQP2 2a n=1 Tax=Cucumber mosaic virus RepID=A6YQP2_9BROM Length = 840 Score = 79.7 bits (195), Expect = 1e-13 Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [63][TOP] >UniRef100_A2THY8 2a protein n=1 Tax=Cucumber mosaic virus RepID=A2THY8_9BROM Length = 857 Score = 79.7 bits (195), Expect = 1e-13 Identities = 66/189 (34%), Positives = 99/189 (52%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 628 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [64][TOP] >UniRef100_O40977 RNA-directed RNA polymerase 2A n=2 Tax=Cucumber mosaic virus RepID=ORF2A_CMVNT Length = 857 Score = 79.7 bits (195), Expect = 1e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [65][TOP] >UniRef100_Q86783 RNA-directed RNA polymerase 2A n=2 Tax=Cucumber mosaic virus RepID=ORF2A_CMVK Length = 858 Score = 79.7 bits (195), Expect = 1e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [66][TOP] >UniRef100_P16490 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain FNY) RepID=ORF2A_CMVFN Length = 857 Score = 79.7 bits (195), Expect = 1e-13 Identities = 68/189 (35%), Positives = 98/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDALTY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDALTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [67][TOP] >UniRef100_O39436 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain As) RepID=ORF2A_CMVAS Length = 858 Score = 79.7 bits (195), Expect = 1e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPCSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [68][TOP] >UniRef100_C8CAI9 2a (Fragment) n=1 Tax=Cucumber mosaic virus RepID=C8CAI9_9BROM Length = 318 Score = 79.3 bits (194), Expect = 2e-13 Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 73 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 129 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL+ VP+PL+ + RLG+KK+ N D Sbjct: 130 TLFNMEAKVMEPAVPYICSKFLL----FDEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 185 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 186 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 244 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 245 ELYYSDRQQCDL 256 [69][TOP] >UniRef100_Q9YNL6 Putative RNA dependent RNA polymerase n=1 Tax=Peanut stunt virus RepID=Q9YNL6_9BROM Length = 834 Score = 79.0 bits (193), Expect = 3e-13 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT Sbjct: 559 FQRRTGDAFTYFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDWGLDES 671 Query: 220 Y 218 Y Sbjct: 672 Y 672 [70][TOP] >UniRef100_Q9WA71 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q9WA71_9BROM Length = 858 Score = 79.0 bits (193), Expect = 3e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSILPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSLFFELKYRKSGAEAALILGAFKKYTANFKSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [71][TOP] >UniRef100_Q85065 2a protein n=1 Tax=Peanut stunt virus RepID=Q85065_9BROM Length = 834 Score = 79.0 bits (193), Expect = 3e-13 Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 8/188 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA T GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT Sbjct: 559 FQRRTGDAFTSFGNTLVTMALFSWCYD--TDQFDRMLFSGDDSLAFSLNPIEGKSDW-FT 615 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +LFN+EAK P+ICSKFL+T + VP+PL+ L RLG+KK+ DE Sbjct: 616 SLFNMEAKNMDPPTPYICSKFLLTDELGN----TFSVPDPLRELQRLGTKKIPDGGLDES 671 Query: 220 Y-----QSWIDTIGVF--NDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLC 62 Y S++D + H+ + + +Y ++ A LE K + ++ Sbjct: 672 YLKAHFMSFVDRLKFLPRMTHYTVAQLTTFYEMKY-KKSGAECHAMLEGFAKYSTNFSIY 730 Query: 61 KECLFNEK 38 KE +++ Sbjct: 731 KELYISDQ 738 [72][TOP] >UniRef100_B1VCT9 2a protein n=1 Tax=Peanut stunt virus RepID=B1VCT9_9BROM Length = 834 Score = 79.0 bits (193), Expect = 3e-13 Identities = 51/121 (42%), Positives = 71/121 (58%), Gaps = 1/121 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A Y+ + ++ SGDDSL ++ + ++ FT Sbjct: 564 FQRRTGDAFTYFGNTLVTMALFAWCYD--TDHFNRLLFSGDDSLAFSLNPIEGRSDW-FT 620 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +LFN+EAK P+ICSKFL+T VP+PL+ L RLG+KK+ D+ Sbjct: 621 SLFNMEAKNMDPPTPYICSKFLLT----DELGHTFSVPDPLRELQRLGTKKIPDGGVDDS 676 Query: 220 Y 218 Y Sbjct: 677 Y 677 [73][TOP] >UniRef100_P03594 RNA-directed RNA polymerase 2A n=1 Tax=Brome mosaic virus RepID=ORF2A_BMV Length = 822 Score = 79.0 bits (193), Expect = 3e-13 Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 1/115 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + +L D + + SGDDSLI + + D + +FT Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236 +LFN+E K + P++CSKFL+ T G+ ++ VP+PL+ + RL +K+ D Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGN--LVSVPDPLREIQRLAKRKILRD 627 [74][TOP] >UniRef100_Q8QXZ6 Replicase n=1 Tax=Cucumber mosaic virus RepID=Q8QXZ6_9BROM Length = 857 Score = 78.6 bits (192), Expect = 3e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [75][TOP] >UniRef100_Q66144 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q66144_9BROM Length = 858 Score = 78.6 bits (192), Expect = 3e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFPWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [76][TOP] >UniRef100_Q5QQK8 Replicase protein n=1 Tax=Cucumber mosaic virus RepID=Q5QQK8_9BROM Length = 772 Score = 78.6 bits (192), Expect = 3e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [77][TOP] >UniRef100_C4TP50 Replicase n=1 Tax=Cucumber mosaic virus RepID=C4TP50_9BROM Length = 857 Score = 78.6 bits (192), Expect = 3e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [78][TOP] >UniRef100_Q66136 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain B) RepID=ORF2A_CMVB Length = 857 Score = 78.6 bits (192), Expect = 3e-13 Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDSSKFT 628 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + ++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMQFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [79][TOP] >UniRef100_Q9Q1T5 2a protein n=1 Tax=Peanut stunt virus RepID=Q9Q1T5_9BROM Length = 833 Score = 78.2 bits (191), Expect = 4e-13 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 1/121 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A Y+ ++ SGDDSL ++ + ++ FT Sbjct: 562 FQRRTGDAFTYFGNTLVTMALFAWCYD--TDQFDRLLFSGDDSLAFSLSPVEGRSDW-FT 618 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +LFN+EAK P+ICSKFL+T VP+PL+ L RLG+KK+ D+ Sbjct: 619 SLFNMEAKNMDPPTPYICSKFLLT----DDLGHTFSVPDPLRELQRLGTKKIPDGGVDDS 674 Query: 220 Y 218 Y Sbjct: 675 Y 675 [80][TOP] >UniRef100_Q8QVF9 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8QVF9_9BROM Length = 840 Score = 78.2 bits (191), Expect = 4e-13 Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ E A L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNETAQVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [81][TOP] >UniRef100_Q8B3N0 RNA dependent RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=Q8B3N0_9BROM Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [82][TOP] >UniRef100_Q8B3M7 RNA dependent RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=Q8B3M7_9BROM Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [83][TOP] >UniRef100_Q8B3M4 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q8B3M4_9BROM Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LYAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [84][TOP] >UniRef100_Q83261 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q83261_9BROM Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [85][TOP] >UniRef100_Q75VK5 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=Q75VK5_9BROM Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [86][TOP] >UniRef100_O90707 RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=O90707_9BROM Length = 840 Score = 78.2 bits (191), Expect = 4e-13 Identities = 65/192 (33%), Positives = 98/192 (51%), Gaps = 7/192 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN++AK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 626 TLFNMKAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 681 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 682 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAQVLGAFKKYTANFNAYK 740 Query: 58 ECLFNEKHESNV 23 E ++++ + ++ Sbjct: 741 ELYYSDRQQCDL 752 [87][TOP] >UniRef100_C7C690 Replicase (Fragment) n=1 Tax=Cucumber mosaic virus RepID=C7C690_9BROM Length = 438 Score = 78.2 bits (191), Expect = 4e-13 Identities = 62/164 (37%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 265 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 321 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV----NADI 233 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ N D Sbjct: 322 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREIQRLGTKKIPYSDNNDF 377 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101 + S++D + F D C+ ++ L+ EAAL Sbjct: 378 LFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAAL 420 [88][TOP] >UniRef100_B6VQB2 2a protein n=1 Tax=Cucumber mosaic virus RepID=B6VQB2_9BROM Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [89][TOP] >UniRef100_B0I4W0 2a protein n=1 Tax=Cucumber mosaic virus RepID=B0I4W0_9BROM Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [90][TOP] >UniRef100_Q83265 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain Y) RepID=ORF2A_CMVY Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [91][TOP] >UniRef100_Q96711 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain Kor) RepID=ORF2A_CMVKO Length = 857 Score = 78.2 bits (191), Expect = 4e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [92][TOP] >UniRef100_Q91F44 2a protein (Fragment) n=1 Tax=Cucumber mosaic virus RepID=Q91F44_9BROM Length = 176 Score = 77.8 bits (190), Expect = 6e-13 Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 5/132 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G + P FT Sbjct: 27 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSQLPPVGDPSKFT 83 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 84 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 139 Query: 220 ----YQSWIDTI 197 + S++D + Sbjct: 140 LFAHFMSFVDRL 151 [93][TOP] >UniRef100_Q8QXZ0 Putative RNA dependent RNA polymerase (Fragment) n=1 Tax=Cucumber mosaic virus RepID=Q8QXZ0_9BROM Length = 256 Score = 77.8 bits (190), Expect = 6e-13 Identities = 63/164 (38%), Positives = 86/164 (52%), Gaps = 5/164 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 90 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 146 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 147 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 202 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101 + S++D + F D C+ ++ L+ EAAL Sbjct: 203 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAAL 245 [94][TOP] >UniRef100_Q80IV0 RNA-dependent-RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=Q80IV0_9BROM Length = 857 Score = 77.8 bits (190), Expect = 6e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYRKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [95][TOP] >UniRef100_Q65662 2a protein n=1 Tax=Brome mosaic virus RepID=Q65662_BMV Length = 822 Score = 77.8 bits (190), Expect = 6e-13 Identities = 47/115 (40%), Positives = 74/115 (64%), Gaps = 1/115 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + +L D + + SGDDSLI + + D + +FT Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236 +LFN+E K + P++CSKFL+ T G+ ++ +P+P++ + RL +K+ D Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGN--LVSIPDPMREIQRLAKRKILRD 627 [96][TOP] >UniRef100_Q20A32 2a protein n=1 Tax=Cucumber mosaic virus RepID=Q20A32_9BROM Length = 858 Score = 77.8 bits (190), Expect = 6e-13 Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 573 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSILPPVGDPSKFT 629 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 630 TLFNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYPDDDEF 685 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101 + S++D + F D C+ ++ L+ EAAL Sbjct: 686 LFAHFMSFVDRLR-FLDRMSQSCIDQLSFFFELKYKKSGEEAAL 728 [97][TOP] >UniRef100_Q66117 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain Ixora) RepID=ORF2A_CMVIX Length = 858 Score = 77.8 bits (190), Expect = 6e-13 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ GDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFPGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [98][TOP] >UniRef100_Q83262 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain Iizuka) RepID=ORF2A_CMVII Length = 857 Score = 77.8 bits (190), Expect = 6e-13 Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TL+N+EAK + P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLYNMEAKVMEPSVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [99][TOP] >UniRef100_Q9IVE4 Polymerase n=1 Tax=Cucumber mosaic virus (strain Mf) RepID=Q9IVE4_9BROM Length = 857 Score = 77.0 bits (188), Expect = 1e-12 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLIFSGDDSL-GFSLLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ CSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYTCSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [100][TOP] >UniRef100_Q91F43 2a protein (Fragment) n=1 Tax=Cucumber mosaic virus RepID=Q91F43_9BROM Length = 176 Score = 77.0 bits (188), Expect = 1e-12 Identities = 58/144 (40%), Positives = 78/144 (54%), Gaps = 5/144 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 27 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 83 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 84 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 139 Query: 220 ----YQSWIDTIGVFNDHHVIRCV 161 + S++D + F D C+ Sbjct: 140 LFAHFMSFVDRL-KFLDRMTQSCI 162 [101][TOP] >UniRef100_Q50L55 2a protein n=1 Tax=Cassia yellow blotch virus RepID=Q50L55_9BROM Length = 779 Score = 77.0 bits (188), Expect = 1e-12 Identities = 46/115 (40%), Positives = 72/115 (62%), Gaps = 1/115 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT++ + + Y+L +++ SGDDSL+ E + LF Sbjct: 525 FQRRTGDAFTYFGNTLVTMSMMAYCYDL--SKMEYCFFSGDDSLL-ISREKHSFEPLLFQ 581 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD 236 +LFN+E K + P+ICSK+L+ +G +VV VP+P++ + R+ +K+ D Sbjct: 582 SLFNMEIKVMEPSLPYICSKYLL---ETTGGRVV-SVPDPVREIQRMSKRKIVKD 632 [102][TOP] >UniRef100_B3GR05 2a protein n=1 Tax=Cucumber mosaic virus RepID=B3GR05_9BROM Length = 858 Score = 77.0 bits (188), Expect = 1e-12 Identities = 62/164 (37%), Positives = 86/164 (52%), Gaps = 5/164 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 573 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLIFSGDDSL-GFSILPPVGDPSKFT 629 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK + P+ICSKF ++ VP+PL+ + RLG+KK+ DE+ Sbjct: 630 TLFNMEAKVMEPSVPYICSKFXLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDGDEF 685 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101 + S++D + F D C+ ++ L+ EAAL Sbjct: 686 LFAHFMSFVDRL-KFLDRMSQSCIDQLSFFFELKYKKSGEEAAL 728 [103][TOP] >UniRef100_A0SL68 2a protein n=1 Tax=Brome mosaic virus RepID=A0SL68_BMV Length = 822 Score = 76.6 bits (187), Expect = 1e-12 Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 1/112 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + +L D + + SGDDSLI + + D + +FT Sbjct: 520 FQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDC--AIFSGDDSLIISKVKPVLDTD-MFT 576 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV 245 +LFN+E K + P++CSKFL+ T G+ V +P+P++ + RL +K+ Sbjct: 577 SLFNMEIKVMDPSVPYVCSKFLV--ETEMGNWV--SIPDPMREIQRLAKRKI 624 [104][TOP] >UniRef100_Q65383 2a protein n=1 Tax=Broad bean mottle virus RepID=Q65383_BBMV Length = 827 Score = 76.3 bits (186), Expect = 2e-12 Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + +++ + + SGDDSL+ P +F Sbjct: 540 FQRRTGDAFTYFGNTLVTMAMMAYCFDM--STAELAMFSGDDSLV-ICGSKPEFDPSIFQ 596 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADI 233 +LFN+E K + P+ICSKFL+ S V VP+P++ + RL +K+ D+ Sbjct: 597 SLFNMEVKVMDPSLPYICSKFLLE----SEFGDVFSVPDPMREIQRLQKRKIPKDV 648 [105][TOP] >UniRef100_Q6RKQ4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3 RepID=Q6RKQ4_9CLOS Length = 538 Score = 75.9 bits (185), Expect = 2e-12 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGN++V L V +D ++V SGDDSLI + + L D L + Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 +QS++D FN VI+ +A + +Y Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469 [106][TOP] >UniRef100_O71189 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3 RepID=O71189_9CLOS Length = 538 Score = 75.9 bits (185), Expect = 2e-12 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGN++V L V +D ++V SGDDSLI + + L D L + Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 +QS++D FN VI+ +A + +Y Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469 [107][TOP] >UniRef100_C4TP45 Replicase n=1 Tax=Cucumber mosaic virus RepID=C4TP45_9BROM Length = 857 Score = 75.9 bits (185), Expect = 2e-12 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 7/189 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQ RTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQGRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSLLPPVGDSSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+KK+ DE+ Sbjct: 629 TLFNMEAKVMEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKKIPYSDNDEF 684 Query: 220 ----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLCK 59 + S++D + F D C+ ++ L+ EAA L + K A+ K Sbjct: 685 LFAHFMSFVDRL-KFLDRMSQSCIDQLSIFFELKYKKSGEEAALMLGAFKKYTANFQSYK 743 Query: 58 ECLFNEKHE 32 E ++++ + Sbjct: 744 ELYYSDRRQ 752 [108][TOP] >UniRef100_B3FQ65 RNA dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3 RepID=B3FQ65_9CLOS Length = 538 Score = 75.9 bits (185), Expect = 2e-12 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGN++V L V +D ++V SGDDSLI + + L D L + Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YSYIVVSGDDSLIFSRQPLDIDTSVL-SD 386 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 +QS++D FN VI+ +A + +Y Sbjct: 442 FQSFVDLSRGFNREDVIQELAKLVTRKY 469 [109][TOP] >UniRef100_Q65382 2a protein n=1 Tax=Broad bean mottle virus RepID=Q65382_BBMV Length = 827 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + +++ + + SGDDSL+ P +F Sbjct: 540 FQRRTGDAFTYFGNTLVTMAMMAYCFDM--STAELAMFSGDDSLV-ICGSKPEFDPGVFQ 596 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADI 233 +LFN+E K + P+ICSKFL+ S V VP+P++ + RL +K+ D+ Sbjct: 597 SLFNMEVKVMDPSLPYICSKFLLE----SEFGDVFSVPDPMREIQRLQKRKIPKDV 648 [110][TOP] >UniRef100_Q0PP58 RNA-dependent RNA polymerase n=1 Tax=Cucumber mosaic virus RepID=Q0PP58_9BROM Length = 858 Score = 75.5 bits (184), Expect = 3e-12 Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 5/132 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ + ++ SGDDSL G P FT Sbjct: 572 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFEKLLFSGDDSL-GFSVLPPVGDPSKFT 628 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 TLFN+EAK P+ICSKFL++ VP+PL+ + RLG+K++ DE+ Sbjct: 629 TLFNMEAKVVEPAVPYICSKFLLS----DEFGNTFSVPDPLREVQRLGTKRIPYSDNDEF 684 Query: 220 ----YQSWIDTI 197 + S++D + Sbjct: 685 LFAHFMSFVDRL 696 [111][TOP] >UniRef100_Q8BEM5 2a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM5_CCMV Length = 808 Score = 75.1 bits (183), Expect = 4e-12 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + ++ V + SGDDSL+ + P +F Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227 +LFN+E K + P++CSKFL+ + ++ VP+P++ + RL +K+ + ++ Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643 Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137 ++S+ D + N D +I + A +Y Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675 [112][TOP] >UniRef100_Q8BEM2 2a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM2_CCMV Length = 808 Score = 75.1 bits (183), Expect = 4e-12 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + ++ V + SGDDSL+ + P +F Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227 +LFN+E K + P++CSKFL+ + ++ VP+P++ + RL +K+ + ++ Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643 Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137 ++S+ D + N D +I + A +Y Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675 [113][TOP] >UniRef100_D0AB44 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus RepID=D0AB44_9BROM Length = 91 Score = 75.1 bits (183), Expect = 4e-12 Identities = 36/46 (78%), Positives = 39/46 (84%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIG 440 +QRRTGDA TYLGNTIVTLA LC+VY+L NV VVASGDDSLIG Sbjct: 46 YQRRTGDACTYLGNTIVTLAALCYVYDLQSSNVTMVVASGDDSLIG 91 [114][TOP] >UniRef100_P20179 RNA-directed RNA polymerase 2A n=1 Tax=Cowpea chlorotic mottle virus RepID=ORF2A_CCMV Length = 808 Score = 75.1 bits (183), Expect = 4e-12 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 5/152 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNT+VT+A + + ++ V + SGDDSL+ + P +F Sbjct: 531 FQRRTGDAFTYFGNTLVTMAMMAYCCDM--NTVDCAIFSGDDSLL-ICKSKPHLDANVFQ 587 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NADIFD 227 +LFN+E K + P++CSKFL+ + ++ VP+P++ + RL +K+ + ++ Sbjct: 588 SLFNMEIKVMDPSLPYVCSKFLLE----TEMNNLVSVPDPMREIQRLAKRKIIKSPELLR 643 Query: 226 EWYQSWIDTIGVFN--DHHVIRCVAAMTAHRY 137 ++S+ D + N D +I + A +Y Sbjct: 644 AHFESFCDRMKFLNKLDEKMINLLCKFVALKY 675 [115][TOP] >UniRef100_D0AB43 RNA dependent RNA polymerase (Fragment) n=1 Tax=Prune dwarf virus RepID=D0AB43_9BROM Length = 91 Score = 74.7 bits (182), Expect = 5e-12 Identities = 36/46 (78%), Positives = 39/46 (84%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIG 440 +QRRTGDA TYLGNTIVTLA LC+VY+L NV VVASGDDSLIG Sbjct: 46 YQRRTGDACTYLGNTIVTLAALCYVYDLKSSNVAMVVASGDDSLIG 91 [116][TOP] >UniRef100_Q9DUT2 Putative 2a protein n=1 Tax=Pelargonium zonate spot virus RepID=Q9DUT2_PZSV Length = 687 Score = 73.6 bits (179), Expect = 1e-11 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA T+ GNT+VT+A Y+ + ++ +GDDSL + + ++ F Sbjct: 488 FQRRTGDAFTFFGNTLVTMAMFSFCYDTR--QFEKMLFAGDDSLAISSSPIVGCSDY-FV 544 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW 221 +LFN+EAK P+ICSKFL++ P+P++ RLG KK++AD D Sbjct: 545 SLFNMEAKIMDPGVPYICSKFLVS----DELGRCFSAPDPIREFQRLGKKKISADNDDAL 600 Query: 220 YQSWI 206 ++ ++ Sbjct: 601 FEQYV 605 [117][TOP] >UniRef100_A4ZZ83 RNA-dependent RNA polymerase 2 (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3 RepID=A4ZZ83_9CLOS Length = 342 Score = 73.6 bits (179), Expect = 1e-11 Identities = 53/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGN++V L V +D +VV SGDDSLI + L D L + Sbjct: 129 QRRSGGANTWLGNSLVLCTLLSVVLRGLD--YDYVVVSGDDSLIFSKRPLDIDTVVL-SD 185 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E Sbjct: 186 NFGFDVKVFNQAAPYFCSKFLVQV-----EDDLYFVPDPLKLFVKFGASKTSDIDLLHEI 240 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 +QS++D FN VI+ + + +Y Sbjct: 241 FQSFVDLSRGFNREDVIQALVHLVTRKY 268 [118][TOP] >UniRef100_Q6QCI3 Polymerase (Fragment) n=1 Tax=Mint vein banding-associated virus RepID=Q6QCI3_9CLOS Length = 520 Score = 73.2 bits (178), Expect = 1e-11 Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 2/152 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G + T+LGNTI T+A L Y D + + +GDDSLI + L E L Sbjct: 331 QRRSGASNTFLGNTITTMAILSMYYTYED--CELCMFAGDDSLILGSKSLDDCCE-LINK 387 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA-DIFDEW 221 FN+E+KF HN P+ CSK++ LS + L VP+P K+L++LG ++ DE Sbjct: 388 DFNMESKFIHNSTPYFCSKYI-----LSFNGKALVVPDPYKMLVKLGKSYFDSKSNVDER 442 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRP 125 +QS+ D +++ V+ + + RY P Sbjct: 443 FQSFKDLTSSYDNDLVVSKLVFYHSLRYKPNP 474 [119][TOP] >UniRef100_Q4EW63 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 2 RepID=Q4EW63_9CLOS Length = 459 Score = 73.2 bits (178), Expect = 1e-11 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYVSGDDSLIFSRSEISNYADDICTD 306 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA--DIFDE 224 + E KF + P+ CSKF++ + G K VP+P KL ++LG+ K +A D E Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDASMDFLFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D FND +I+ +A + A +Y Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389 [120][TOP] >UniRef100_O71210 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 2 RepID=O71210_9CLOS Length = 459 Score = 73.2 bits (178), Expect = 1e-11 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224 + E KF + P+ CSKF++ + G K VP+P KL ++LG+ K V+ D E Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D FND +I+ +A + A +Y Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389 [121][TOP] >UniRef100_B7U5T6 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 2 RepID=B7U5T6_9CLOS Length = 459 Score = 73.2 bits (178), Expect = 1e-11 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224 + E KF + P+ CSKF++ + G K VP+P KL ++LG+ K V+ D E Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D FND +I+ +A + A +Y Sbjct: 361 TFTSFKDLTSDFNDERLIQKLAELVALKY 389 [122][TOP] >UniRef100_Q1PQK5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3 RepID=Q1PQK5_9CLOS Length = 543 Score = 72.4 bits (176), Expect = 2e-11 Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGN+IV L V +D +VV SGDDSLI + + L D L + Sbjct: 330 QRRSGGANTWLGNSIVLCTLLSVVLRGLD--YDYVVISGDDSLIFSRQPLDVDTSVL-SD 386 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K F P+ CSKF++ + + VP+PLKL ++ G SK + D+ E Sbjct: 387 NFGFDVKMFNQAAPYFCSKFMVQV-----DDGLFFVPDPLKLFVKFGASKTSDIDLLHEI 441 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 +QS++D N VI+ + + +Y Sbjct: 442 FQSFVDLSKGLNREDVIQALTHLVTRKY 469 [123][TOP] >UniRef100_B2C4G0 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3 RepID=B2C4G0_9CLOS Length = 541 Score = 72.4 bits (176), Expect = 2e-11 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 2/148 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGN++V L V +D ++V SGDDS I + + L D L + Sbjct: 330 QRRSGGANTWLGNSLVLCTLLSVVPRGLD--YSYIVVSGDDSPIFSRQPLDIDTSVL-SE 386 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K F P+ CSKFL+ + + VP+PLKL ++ G SK + D+ E Sbjct: 387 NFGFDVKIFNQAAPYFCSKFLVQV-----EDSLFFVPDPLKLFVKFGASKTSDIDLLHEI 441 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 +QS++D FN VI+ +A + +Y Sbjct: 442 FQSFVDLSKGFNREDVIQELAKLVTRKY 469 [124][TOP] >UniRef100_A4GWE5 RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3 RepID=A4GWE5_9CLOS Length = 200 Score = 72.4 bits (176), Expect = 2e-11 Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 2/148 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGN+IV L V +D +VV SGDDSLI + + L D L + Sbjct: 58 QRRSGGANTWLGNSIVLCTLLSVVLRGLD--YDYVVISGDDSLIFSRQPLDVDTSVL-SD 114 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K F P+ CSKF++ + + VP+PLKL ++ G SK + D+ E Sbjct: 115 NFGFDVKMFNQAAPYFCSKFMVQV-----DDGLFFVPDPLKLFVKFGASKTSDIDLLHEI 169 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 +QS++D N VI+ + + +Y Sbjct: 170 FQSFVDLSKGLNREDVIQALTHLVTRKY 197 [125][TOP] >UniRef100_Q49IH2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 2 RepID=Q49IH2_9CLOS Length = 459 Score = 71.6 bits (174), Expect = 4e-11 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 306 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA--DIFDE 224 + E KF + P+ CSKF++ + G K VP+P KL ++LG+ K +A D E Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDASMDFLFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D FND +I+ +A + A +Y Sbjct: 361 VFTSFKDLTTDFNDERLIQKLAELVAVKY 389 [126][TOP] >UniRef100_C6GFJ8 1b n=1 Tax=Carrot yellow leaf virus RepID=C6GFJ8_9CLOS Length = 478 Score = 71.2 bits (173), Expect = 5e-11 Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 6/173 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T++GN++VTL L Y+L ++ V SGDDSLI + ++L E + Sbjct: 263 QRRSGAANTWIGNSVVTLGILSLYYDL--AKMQGVFISGDDSLIFSSQKLSNHSEAICLE 320 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227 EAKF + P+ CSKFL+ VP+P KL+++LG S+ +AD+F Sbjct: 321 T-GFEAKFMSPSVPYFCSKFLVFC-----EHKFFFVPDPYKLIVKLGQVRSEVEDADLF- 373 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA--ALESLGKIFAS 74 E + S+ D +D V+ +A + +Y + L A A+ LG F+S Sbjct: 374 EIFTSFKDLTKDMHDERVLEYLARLVEEKYDVKSRCVLSALHAVHCLGSNFSS 426 [127][TOP] >UniRef100_P06012 RNA-directed RNA polymerase 2A n=1 Tax=Cucumber mosaic virus (strain Q) RepID=ORF2A_CMVQ Length = 839 Score = 70.9 bits (172), Expect = 7e-11 Identities = 64/193 (33%), Positives = 96/193 (49%), Gaps = 8/193 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFT 398 FQRRTGDA TY GNTIVT+A Y+ ++ SGDDSL + + P FT Sbjct: 569 FQRRTGDAFTYFGNTIVTMAEFAWCYD--TDQFDRLLFSGDDSLAFS-KLPPVGDPSKFT 625 Query: 397 TLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNP-LKLLIRLGSKKV----NAD 236 TLFN+EAK P+ICSKF M +V +P ++ + RLG+KK+ N D Sbjct: 626 TLFNMEAKVMEPAVPYICSKFYSLM------SLVTRFQSPTIREIQRLGTKKIPYSDNND 679 Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAA--LESLGKIFASKTLC 62 + S++D + F D C+ ++ L+ EAA L + K A+ Sbjct: 680 FLFAHFMSFVDRL-KFMDRMSQSCIDQLSIFFELKYKKSGNEAALVLGAFKKYTANFNAY 738 Query: 61 KECLFNEKHESNV 23 KE ++++ + ++ Sbjct: 739 KELYYSDRQQCDL 751 [128][TOP] >UniRef100_Q65854 RNA replicase (Fragment) n=1 Tax=Beet yellow stunt virus RepID=Q65854_9CLOS Length = 460 Score = 70.5 bits (171), Expect = 9e-11 Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN++VTL L Y++ FV SGDDSLI + +E+ E + Sbjct: 251 QRKSGASNTWIGNSVVTLGILAMYYDVSKFQALFV--SGDDSLIFSADEIANYAEDICLE 308 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 L E KF + P+ CSKFL+ +G K V VP+P KLL++LG+ ++++ + E Sbjct: 309 L-GFETKFLTPSVPYFCSKFLV----FTGDKCVF-VPDPYKLLVKLGASGRRLSDEELFE 362 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ ++ + +Y Sbjct: 363 VFVSFRDLTKEFGDERVLNTLSELVHLKY 391 [129][TOP] >UniRef100_Q19PH3 Replicase-associated protein (Fragment) n=1 Tax=Solanum violaefolium ringspot virus RepID=Q19PH3_9VIRU Length = 198 Score = 70.5 bits (171), Expect = 9e-11 Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 3/181 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+GD T++GNTI +A L +++++ + F SGDDSL+ + F+ Sbjct: 27 QRRSGDGGTFIGNTIFLMAVLSYIFDM--SKMDFATFSGDDSLLIADKRYLSCDSSKFSD 84 Query: 394 LFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDE 224 LFNL+ KF + CSKFLI + VP+P+KLL+RL +N +E Sbjct: 85 LFNLDVKFFDKFEYYHFCSKFLIPV-----QDRWFFVPDPIKLLVRLSRCDLINWAHIEE 139 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFN 44 + S D+ F D V+R + RY + S E + SL I + E LF+ Sbjct: 140 YRISLCDSTKFFGDIDVVRVLKEAVMERYAMQYS--FEEFIYSLRAIVTDPIMFME-LFD 196 Query: 43 E 41 E Sbjct: 197 E 197 [130][TOP] >UniRef100_Q9Q6Q3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1 RepID=Q9Q6Q3_9CLOS Length = 527 Score = 70.1 bits (170), Expect = 1e-10 Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 2/191 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGNT+V + L +P++ VV GDDSLI + EL + L + Sbjct: 344 QRRSGGANTWLGNTLVLMTLLAISLKGFEPDL--VVVCGDDSLIFSKNELVINDRILEES 401 Query: 394 LFNLEAKFP-HNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K P+ CSK+L+ P +P+P KL ++L ++ N D+ E Sbjct: 402 -FGFDLKLTCQCVPYFCSKYLVRTP-----DHCYFLPDPFKLFLKLSLEREPNEDLLFEV 455 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKECLFNE 41 + S++D F D + ++ + M A RY P Y AA + + A+ K F+ Sbjct: 456 FTSFVDLTRGFGDENAVQQLVEMDAQRYGFNP--YAYAAFSLVHVLAANFVQFKRLFFDA 513 Query: 40 KHESNVKIKPR 8 K+K + Sbjct: 514 DGAFGKKLKSK 524 [131][TOP] >UniRef100_Q2V8A7 RNA-dependent RNA polymerase n=1 Tax=Grapevine leafroll-associated virus 2 RepID=Q2V8A7_9CLOS Length = 420 Score = 70.1 bits (170), Expect = 1e-10 Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN++VTL L Y++ ++ SGDDSLI + +++ + + Sbjct: 210 QRKSGASNTWIGNSLVTLGILSLYYDVRKFEALYI--SGDDSLIFSRDKISNYADDICAD 267 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224 + E KF + P+ CSKF++ + G K VP+P KL ++LG+ K V+ D E Sbjct: 268 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 321 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D FND VI+ +A + A +Y Sbjct: 322 TFTSFKDLTSDFNDERVIQKLAELVALKY 350 [132][TOP] >UniRef100_Q8BEP8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine rootstock stem lesion associated virus RepID=Q8BEP8_9CLOS Length = 459 Score = 69.7 bits (169), Expect = 2e-10 Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN++VTL L Y++ +V SGDDSLI + ++ + + Sbjct: 249 QRKSGASNTWIGNSLVTLGILSLYYDVRHFEALYV--SGDDSLIFSRNKISNYADDICAD 306 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224 + E KF + P+ CSKF++ + G K VP+P KL ++LG+ K V+ D E Sbjct: 307 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VPDPYKLFVKLGAVKEDVSMDFLFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D FND VI+ +A + A +Y Sbjct: 361 TFTSFKDLTSDFNDERVIQKLAELVALKY 389 [133][TOP] >UniRef100_A1YLW5 RNA dependent-RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1 RepID=A1YLW5_9CLOS Length = 527 Score = 69.7 bits (169), Expect = 2e-10 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 2/155 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGNT+V + L +P++ VV GDDSLI + EL + L + Sbjct: 344 QRRSGGANTWLGNTLVLMTLLAISLKGSEPSL--VVVCGDDSLIFSKNELLINDRILEES 401 Query: 394 LFNLEAKFP-HNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 F + K P+ CSK+L+ P +P+P KL ++L ++ N D+ E Sbjct: 402 -FGFDLKLTCQCAPYFCSKYLVRTP-----DHCYFLPDPFKLFLKLSLEREPNEDLLFEV 455 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116 + S++D + D + ++ + AM A RY P Y Sbjct: 456 FTSFVDLTRGYGDENAVQQLVAMDAQRYGPNPYAY 490 [134][TOP] >UniRef100_Q9DQ91 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug wilt-associated virus 2 RepID=Q9DQ91_9CLOS Length = 559 Score = 68.6 bits (166), Expect = 3e-10 Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 2/155 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+LGNTIV + L + L + +V ++V SGDDSLI + E L D L T Sbjct: 344 QRRSGGANTWLGNTIVVMTLLSIL--LEESHVDYIVVSGDDSLIFSTEPLDLDTHTL-TQ 400 Query: 394 LFNLEAKFPH-NQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-SKKVNADIFDEW 221 + + K + P+ CSKFL+ L VP+P KL ++ G K + E Sbjct: 401 NYGFDCKLLNMTAPYFCSKFLVQCKDL-----CYFVPDPFKLFVKHGICKSTSVSDLHER 455 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116 + S++D V+ VA +Y R Y Sbjct: 456 FMSFVDVTKDLVSEDVVAAVAECVLWKYHRTNYTY 490 [135][TOP] >UniRef100_O39852 RNA polymerase n=1 Tax=Grapevine leafroll-associated virus 2 RepID=O39852_9CLOS Length = 420 Score = 68.6 bits (166), Expect = 3e-10 Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN++VTL L Y++ N + + SGDDSLI + E+ + + T Sbjct: 210 QRKSGASNTWIGNSLVTLGILSLYYDVR--NFEALYISGDDSLIFSRSEISNYADDICTD 267 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224 + E KF + P+ CSKF++ + G K V +P KL ++LG+ K V+ D E Sbjct: 268 M-GFETKFMSPSVPYFCSKFVV----MCGHKTFF-VLDPYKLFVKLGAVKEDVSMDSLFE 321 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D FND +I+ +A + A +Y Sbjct: 322 TFTSFKDLTSDFNDERLIQKLAELVALKY 350 [136][TOP] >UniRef100_Q05983 Non-structural polyprotein protein n=1 Tax=Raspberry bushy dwarf virus RepID=Q05983_RBDV Length = 1694 Score = 68.2 bits (165), Expect = 4e-10 Identities = 57/161 (35%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPN---VKFVVASGDDSLIGTVEELPRDQEF 407 FQRRTGDA T+LGN++VT A L V + DP+ +++++ GDDSLI + + E Sbjct: 1503 FQRRTGDAFTFLGNSLVTAAMLAFV--ISDPDREKIRYMLVGGDDSLICSYGPIQVPLEP 1560 Query: 406 LFTTLFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV--NAD 236 L +FN+ K P+ S++LI +L VP+P KLL++LG K V N Sbjct: 1561 L-GDIFNMSCKLVQPACPYFASRYLIRR-----GDEILCVPDPYKLLVKLGRKDVPDNQA 1614 Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLR-RPSLY 116 E D+ D V + +A + RY + PSLY Sbjct: 1615 SLCEIRTGLADSAKYIFDDIVKQKLAILVQVRYNKAAPSLY 1655 [137][TOP] >UniRef100_Q15GA4 286 kDa polyprotein n=1 Tax=Citrus leprosis virus C RepID=Q15GA4_9VIRU Length = 2512 Score = 67.4 bits (163), Expect = 8e-10 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 4/150 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398 QRR+GD T++GNT+ +A ++L +K V SGDDS L+G +L D + F+ Sbjct: 2327 QRRSGDGGTFIGNTLFLIALCARSFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383 Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227 LFNL+ KF N + CSKFLI + +P+P+KL IRL VN + Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLYIRLARLDLVNWGHIE 2438 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E+ S DT + D ++R ++ RY Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468 [138][TOP] >UniRef100_UPI00001678EC polyprotein n=2 Tax=Little cherry virus 1 RepID=UPI00001678EC Length = 2806 Score = 67.0 bits (162), Expect = 1e-09 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L N++ TLA L VY+L D + ++ SGDDSLI + +E+ ++ Sbjct: 2627 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 2683 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233 F ++AKF N P+ CSKF+I + + VP+P++ +L + + + + Sbjct: 2684 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSTPVTLVQLEHPTL 2738 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D +G + D +VI V + +Y Sbjct: 2739 LRERFTSYRDLMGSYFDENVIIAVERFVSLKY 2770 [139][TOP] >UniRef100_Q1KZ59 Replicase n=1 Tax=Citrus leprosis virus C RepID=Q1KZ59_9VIRU Length = 2512 Score = 67.0 bits (162), Expect = 1e-09 Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 4/150 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398 QRR+GD T++GNT+ +A ++L +K V SGDDS L+G +L D + F+ Sbjct: 2327 QRRSGDGGTFIGNTLFLIALCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383 Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227 LFNL+ KF N + CSKFLI + +P+P+KL IRL VN + Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 2438 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E+ S DT + D ++R ++ RY Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468 [140][TOP] >UniRef100_O40960 RNA polymerase (POL) n=1 Tax=Little cherry virus 1 RepID=O40960_9CLOS Length = 515 Score = 67.0 bits (162), Expect = 1e-09 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L N++ TLA L VY+L D + ++ SGDDSLI + +E+ ++ Sbjct: 336 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 392 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233 F ++AKF N P+ CSKF+I + + VP+P++ +L + + + + Sbjct: 393 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSTPVTLVQLEHPTL 447 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D +G + D +VI V + +Y Sbjct: 448 LRERFTSYRDLMGSYFDENVIIAVERFVSLKY 479 [141][TOP] >UniRef100_B9VB57 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=B9VB57_9CLOS Length = 477 Score = 66.2 bits (160), Expect = 2e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389 [142][TOP] >UniRef100_B9VB33 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=B9VB33_9CLOS Length = 477 Score = 66.2 bits (160), Expect = 2e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389 [143][TOP] >UniRef100_B9VB09 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=B9VB09_9CLOS Length = 477 Score = 66.2 bits (160), Expect = 2e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389 [144][TOP] >UniRef100_O10468 57-kDa RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza virus RepID=O10468_9CLOS Length = 494 Score = 65.9 bits (159), Expect = 2e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 378 LFTSFKDXTQDFGDQVVLEKLKLLVEXKY 406 [145][TOP] >UniRef100_C6ZED6 Polyprotein n=1 Tax=Little cherry virus 1 RepID=C6ZED6_9CLOS Length = 2807 Score = 65.9 bits (159), Expect = 2e-09 Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L N++ TLA L VY+L D + ++ SGDDSLI + +E+ ++ Sbjct: 2628 QRRTGSPNTWLSNSLATLAMLASVYDLDD--IDLIIVSGDDSLIISRKEI-ENKCLEINN 2684 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-----KKVNADI 233 F ++AKF N P+ CSKF+I + + VP+P++ +L S + + + Sbjct: 2685 DFGMDAKFLANPVPYFCSKFIIQV-----DNRIRLVPDPVRFFEKLSSPVTLVQLEHPTL 2739 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D + ++ D +VI V + +Y Sbjct: 2740 LRERFTSYRDLMVLYFDENVIIAVERFVSLKY 2771 [146][TOP] >UniRef100_B9VB21 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=B9VB21_9CLOS Length = 477 Score = 65.9 bits (159), Expect = 2e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSSEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 389 [147][TOP] >UniRef100_Q9IFW9 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9IFW9_9CLOS Length = 477 Score = 65.5 bits (158), Expect = 3e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDNTQDFGDQVVLEKLKLLVEIKY 389 [148][TOP] >UniRef100_Q9DTG4 54-kDa RNA-depended RNA polymerase (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DTG4_9CLOS Length = 477 Score = 65.5 bits (158), Expect = 3e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPKYKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389 [149][TOP] >UniRef100_Q2LK65 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q2LK65_9CLOS Length = 477 Score = 65.5 bits (158), Expect = 3e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389 [150][TOP] >UniRef100_Q1AF88 Polyprotein n=1 Tax=Citrus leprosis virus C RepID=Q1AF88_9VIRU Length = 2512 Score = 65.5 bits (158), Expect = 3e-09 Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398 QRR+GD T++GNT+ + ++L +K V SGDDS L+G +L D + F+ Sbjct: 2327 QRRSGDGGTFIGNTLFLIVLCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 2383 Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227 LFNL+ KF N + CSKFLI + +P+P+KL IRL VN + Sbjct: 2384 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 2438 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E+ S DT + D ++R ++ RY Sbjct: 2439 EYRISLKDTTKYYCDDSIVRELSKAVCDRY 2468 [151][TOP] >UniRef100_C6F419 RDRP protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=C6F419_9CLOS Length = 477 Score = 65.5 bits (158), Expect = 3e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389 [152][TOP] >UniRef100_B5THB8 p1b (Fragment) n=2 Tax=Citrus tristeza virus RepID=B5THB8_9CLOS Length = 494 Score = 65.5 bits (158), Expect = 3e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 378 LFTSFKDNTQDFGDQVVLEKLKLLVEIKY 406 [153][TOP] >UniRef100_B5THA6 p1b (Fragment) n=1 Tax=Citrus tristeza virus RepID=B5THA6_9CLOS Length = 494 Score = 65.5 bits (158), Expect = 3e-09 Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKISNFSSEICLE 323 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 377 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 378 LFTSFKDITQDFGDQVVLEKLKLLVETKY 406 [154][TOP] >UniRef100_UPI0000163DDF RNA-dependant RNA polymerase n=1 Tax=Sweet potato chlorotic stunt virus RepID=UPI0000163DDF Length = 505 Score = 64.7 bits (156), Expect = 5e-09 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 5/151 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VT+ L +VY+L D + ++ SGDDSLI + ++L L Sbjct: 326 QRRTGSPNTWLSNTLVTMGMLLNVYDLDD--IDLMLVSGDDSLIFSKKQLENKTNEL-NI 382 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230 F EAKF N P+ CSKF++ GS V+P P L + +RL S + Sbjct: 383 NFGFEAKFIENSVPYFCSKFIVDD---RGSIKVVPDPVRFFEKLSVPVRL-SDFLAETTL 438 Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D + +++ V V ++ + RY Sbjct: 439 RERFTSYKDLMSEYDNDSVCILVDSLISKRY 469 [155][TOP] >UniRef100_Q8JJW9 Polyprotein n=2 Tax=Sweet potato chlorotic stunt virus RepID=Q8JJW9_9CLOS Length = 2492 Score = 64.7 bits (156), Expect = 5e-09 Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 5/151 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VT+ L +VY+L D + ++ SGDDSLI + ++L L Sbjct: 2313 QRRTGSPNTWLSNTLVTMGMLLNVYDLDD--IDLMLVSGDDSLIFSKKQLENKTNEL-NI 2369 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230 F EAKF N P+ CSKF++ GS V+P P L + +RL S + Sbjct: 2370 NFGFEAKFIENSVPYFCSKFIVDD---RGSIKVVPDPVRFFEKLSVPVRL-SDFLAETTL 2425 Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D + +++ V V ++ + RY Sbjct: 2426 RERFTSYKDLMSEYDNDSVCILVDSLISKRY 2456 [156][TOP] >UniRef100_P87588 54-kDa RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza virus RepID=P87588_9CLOS Length = 477 Score = 64.7 bits (156), Expect = 5e-09 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 Q R+G + T++GN++VTL L Y+ D + ++ SGDDSLI + E++ E Sbjct: 249 QPRSGGSNTWIGNSLVTLGILSLYYD--DSKFELLLISGDDSLIYSKEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKLLVETKY 389 [157][TOP] >UniRef100_D0EAN2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza virus RepID=D0EAN2_9CLOS Length = 503 Score = 64.7 bits (156), Expect = 5e-09 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E+ E Sbjct: 280 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKAEIRNFSSEICLE 337 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G++ +P+P KLL++LG+ K+ D E Sbjct: 338 TGFETKFMSP-SVPYFCSKFVVQ----TGNRTCF-IPDPYKLLVKLGAPQYKLTDDELFE 391 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 Y S+ D F D V+ + + +Y Sbjct: 392 LYTSFKDVTQDFGDQVVLEKLKLLVEAKY 420 [158][TOP] >UniRef100_A8RS54 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Plum bark necrosis stem pitting-associated virus RepID=A8RS54_9CLOS Length = 524 Score = 64.7 bits (156), Expect = 5e-09 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 8/194 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-FT 398 QRRTG A T+LGNT+V +A + V L N + SGDDS++ P D + + Sbjct: 330 QRRTGTATTWLGNTVVNMALMARV--LGCENFSSMAFSGDDSIL--FHHSPLDLDISNYE 385 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224 F + K F P+ CSKF + GS + VP+P+KL + LGS+K + + + E Sbjct: 386 LHFAFDVKLFRMTVPYFCSKFFVV-----GSSGLNFVPDPVKLFVSLGSEKNDDESVMRE 440 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHR-----YLRRPSLYLEAALESLGKIFASKTLCK 59 + S++D + D V + + + + +L L + + G+ LC+ Sbjct: 441 RFVSFLDLTKSYEDLTVCDNMTTLVSVKWGYSDFLSCSLFALHSLRANFGQFMRLWRLCQ 500 Query: 58 ECLFNEKHESNVKI 17 + + EK E+ K+ Sbjct: 501 QNVVFEKFENRNKL 514 [159][TOP] >UniRef100_UPI0000D9FD99 putative RNA dependent RNA polymerase; RdRp n=1 Tax=Citrus leprosis virus C RepID=UPI0000D9FD99 Length = 440 Score = 64.3 bits (155), Expect = 6e-09 Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 4/140 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDS-LIGTVEELPRDQEFLFT 398 QRR+GD T++GNT+ +A ++L +K V SGDDS L+G +L D + F+ Sbjct: 309 QRRSGDGGTFIGNTLFLIALCARNFDLR--KLKLAVFSGDDSLLVGEKRDLQCDSQ-NFS 365 Query: 397 TLFNLEAKFPHNQPF--ICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS-KKVNADIFD 227 LFNL+ KF N + CSKFLI + +P+P+KL IRL VN + Sbjct: 366 DLFNLDVKFFPNFKYYHFCSKFLIAV-----EDRWYFIPDPVKLCIRLARLDLVNWGHIE 420 Query: 226 EWYQSWIDTIGVFNDHHVIR 167 E+ S DT + D ++R Sbjct: 421 EYRISLKDTTKYYCDDSIVR 440 [160][TOP] >UniRef100_UPI0000164AC8 401-kDa viral polyprotein n=2 Tax=Citrus tristeza virus RepID=UPI0000164AC8 Length = 3582 Score = 64.3 bits (155), Expect = 6e-09 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ ++ SGDDSLI + E++ E Sbjct: 3348 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 3405 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227 T F + P + P+ CSKF++ +G+K VP+P KLL++LG +K + ++F Sbjct: 3406 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 3458 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D F D V+ + + +Y Sbjct: 3459 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 3488 [161][TOP] >UniRef100_Q66238 57-kDa RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q66238_9CLOS Length = 500 Score = 64.3 bits (155), Expect = 6e-09 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ ++ SGDDSLI + E++ E Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 323 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227 T F + P + P+ CSKF++ +G+K VP+P KLL++LG +K + ++F Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 376 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D F D V+ + + +Y Sbjct: 377 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 406 [162][TOP] >UniRef100_D0EAM0 RNA dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza virus RepID=D0EAM0_9CLOS Length = 494 Score = 64.3 bits (155), Expect = 6e-09 Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 323 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 T F + P + P+ CSKF++ +G+K +P+P KLL++LG+ K+ + E Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQNKLTDEELFE 377 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 378 LFTSFKDITQDFGDQVVLEKLKLLVEAKY 406 [163][TOP] >UniRef100_B9VB45 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=B9VB45_9CLOS Length = 477 Score = 64.3 bits (155), Expect = 6e-09 Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F + V+ + + +Y Sbjct: 361 LFTSFKDITQDFGNQVVLEKLKLLVEAKY 389 [164][TOP] >UniRef100_B5THD0 p1b (Fragment) n=2 Tax=Citrus tristeza virus RepID=B5THD0_9CLOS Length = 500 Score = 64.3 bits (155), Expect = 6e-09 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ ++ SGDDSLI + E++ E Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDSLIYSSEKISNFSSEICLE 323 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG---SKKVNADIFD 227 T F + P + P+ CSKF++ +G+K VP+P KLL++LG +K + ++F Sbjct: 324 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDVELF- 376 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D F D V+ + + +Y Sbjct: 377 ELFTSFKDMTQDFGDQVVLEKLKLLVEAKY 406 [165][TOP] >UniRef100_UPI0000163D39 polyprotein n=2 Tax=Lettuce infectious yellows virus RepID=UPI0000163D39 Length = 2379 Score = 63.5 bits (153), Expect = 1e-08 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 7/153 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL + Y++ D + ++ SGDDSLI + + LP + + Sbjct: 2200 QRRTGSPNTWLSNTLVTLGMMLSSYDIDD--IDLLLVSGDDSLIFSRKHLPNKTQEI-NK 2256 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233 F +EAK+ + P+ CSKF++ L+G V +P+P++ +L VN + Sbjct: 2257 NFGMEAKYIEKSSPYFCSKFIV---ELNGKLKV--IPDPIRFFEKLSIPIRQEDFVNGSV 2311 Query: 232 FDEWYQSWIDTIGVF-NDHHVIRCVAAMTAHRY 137 E + S+ D + + ND VIR A+ +RY Sbjct: 2312 VKERFISFKDLMKEYDNDVAVIRIDEAV-CYRY 2343 [166][TOP] >UniRef100_Q83045 RNA-dependent RNA polymerase n=1 Tax=Lettuce infectious yellows virus RepID=Q83045_LIYV Length = 476 Score = 63.5 bits (153), Expect = 1e-08 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 7/153 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL + Y++ D + ++ SGDDSLI + + LP + + Sbjct: 297 QRRTGSPNTWLSNTLVTLGMMLSSYDIDD--IDLLLVSGDDSLIFSRKHLPNKTQEI-NK 353 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233 F +EAK+ + P+ CSKF++ L+G V +P+P++ +L VN + Sbjct: 354 NFGMEAKYIEKSSPYFCSKFIV---ELNGKLKV--IPDPIRFFEKLSIPIRQEDFVNGSV 408 Query: 232 FDEWYQSWIDTIGVF-NDHHVIRCVAAMTAHRY 137 E + S+ D + + ND VIR A+ +RY Sbjct: 409 VKERFISFKDLMKEYDNDVAVIRIDEAV-CYRY 440 [167][TOP] >UniRef100_UPI00001BBB39 polyprotein n=1 Tax=Little cherry virus 2 RepID=UPI00001BBB39 Length = 2150 Score = 63.2 bits (152), Expect = 1e-08 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG + T+LGNTIV + L +V N DPN FV SGDDSL+ L RD + Sbjct: 1971 QRRTGGSNTWLGNTIVNMVLLAYVKN-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 2023 Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236 +LE F P P+ CSK++I + + VP+ KL+ +LG + A+ Sbjct: 2024 KLSLELGFDVKFTPVATPYFCSKYII-----NTEDRIFIVPDIFKLVTKLGRVFARTKAE 2078 Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80 E ++S+ DTI F V+ +A +Y +Y A A+ +G F Sbjct: 2079 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 2130 [168][TOP] >UniRef100_Q9Q703 P348 n=1 Tax=Beet yellows virus RepID=Q9Q703_9CLOS Length = 3090 Score = 63.2 bits (152), Expect = 1e-08 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN+IVTL L Y K + SGDDSLI + + + + T Sbjct: 2879 QRKSGASNTWIGNSIVTLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2936 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224 L E KF + P+ CSKF + ++G V VP+P KLL++LG+ K V+ + E Sbjct: 2937 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2990 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D D VI + + +Y Sbjct: 2991 VFTSFRDLTKDLVDERVIELLTHLVHSKY 3019 [169][TOP] >UniRef100_Q7T737 RNA-dependent RNA polymerase n=1 Tax=Little cherry virus 2 RepID=Q7T737_9CLOS Length = 515 Score = 63.2 bits (152), Expect = 1e-08 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG + T+LGNTIV + L +V N DPN FV SGDDSL+ L RD + Sbjct: 336 QRRTGGSNTWLGNTIVNMVLLAYVKN-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 388 Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236 +LE F P P+ CSK++I + + VP+ KL+ +LG + A+ Sbjct: 389 KLSLELGFDVKFTPVATPYFCSKYII-----NTEDRIFIVPDIFKLVTKLGRVFARTKAE 443 Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80 E ++S+ DTI F V+ +A +Y +Y A A+ +G F Sbjct: 444 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 495 [170][TOP] >UniRef100_O89906 Fusion protein n=1 Tax=Beet yellows virus RepID=O89906_9CLOS Length = 3070 Score = 63.2 bits (152), Expect = 1e-08 Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN+IVTL L Y K + SGDDSLI + + + + T Sbjct: 2859 QRKSGASNTWIGNSIVTLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2916 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224 L E KF + P+ CSKF + ++G V VP+P KLL++LG+ K V+ + E Sbjct: 2917 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2970 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D D VI + + +Y Sbjct: 2971 VFTSFRDLTKDLVDERVIELLTHLVHSKY 2999 [171][TOP] >UniRef100_UPI00004FF933 polymerase n=1 Tax=Blackberry yellow vein-associated virus RepID=UPI00004FF933 Length = 505 Score = 62.8 bits (151), Expect = 2e-08 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL + Y + D + ++ SGDDSLI + E+LP + Sbjct: 326 QRRTGSPNTWLSNTLVTLGIILSTYKIDD--IDLLLVSGDDSLIFSKEDLPNLANQI-NQ 382 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233 F +EAKF N P+ CSKF+I + VP+P++ +L ++ + Sbjct: 383 DFGMEAKFIVNSVPYFCSKFII-----EDRGEIKVVPDPVRFFEKLSVPIRLEDFLSETL 437 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E Y S+ D + F+ V V + RY Sbjct: 438 LKEKYTSFKDLMVFFDSDTVCVLVDRLICIRY 469 [172][TOP] >UniRef100_Q5ICW0 ORF 1a/1b fusion polyprotein n=2 Tax=Blackberry yellow vein-associated virus RepID=Q5ICW0_9CLOS Length = 2435 Score = 62.8 bits (151), Expect = 2e-08 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL + Y + D + ++ SGDDSLI + E+LP + Sbjct: 2256 QRRTGSPNTWLSNTLVTLGIILSTYKIDD--IDLLLVSGDDSLIFSKEDLPNLANQI-NQ 2312 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233 F +EAKF N P+ CSKF+I + VP+P++ +L ++ + Sbjct: 2313 DFGMEAKFIVNSVPYFCSKFII-----EDRGEIKVVPDPVRFFEKLSVPIRLEDFLSETL 2367 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E Y S+ D + F+ V V + RY Sbjct: 2368 LKEKYTSFKDLMVFFDSDTVCVLVDRLICIRY 2399 [173][TOP] >UniRef100_B2BD41 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug wilt-associated virus 5 RepID=B2BD41_9CLOS Length = 404 Score = 62.8 bits (151), Expect = 2e-08 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVA-SGDDSLIGTVEELPRDQEFLFT 398 QRRTG A T++GNT+V + L H D N VA +GDDSLI ++P ++ Sbjct: 225 QRRTGAANTWIGNTLVNMVLLSHA---CDVNTFDAVAFAGDDSLI-LKRDVPGVHYDVYD 280 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224 + + + K + P+ C KFL+ G+K V+ +P+P K+ ++ G ++ D + E Sbjct: 281 SKYEFDVKYYSEATPYFCGKFLL----WDGTKTVV-MPDPFKIFVKFGRERPPEDEVLKE 335 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116 ++S+ D ++ H +R ++ + ++ Y Sbjct: 336 LWRSFFDVTRNYDSEHNVRTLSLLLGVKWANSVHAY 371 [174][TOP] >UniRef100_UPI00001D9007 ORF 1b; RdRp; viral polymerase n=1 Tax=Beet pseudo-yellows virus RepID=UPI00001D9007 Length = 505 Score = 62.4 bits (150), Expect = 2e-08 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL + Y+L D + ++ SGDDSLI + + L ++Q Sbjct: 326 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 382 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233 F +EAKF N P+ CSKF+I GS VL P+P++ +L +D + Sbjct: 383 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGVM 437 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E Y S+ D + +N I V A+ + RY Sbjct: 438 LRERYTSYKDLMVGYNLDTNIILVDALISVRY 469 [175][TOP] >UniRef100_Q8JTI2 RNA-dependent RNA polymerase n=1 Tax=Little cherry virus 2 RepID=Q8JTI2_9CLOS Length = 515 Score = 62.4 bits (150), Expect = 2e-08 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 8/173 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG + T+LGNTIV + L +V + DPN FV SGDDSL+ L RD + Sbjct: 336 QRRTGGSNTWLGNTIVNMVLLAYVKD-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 388 Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236 +LE F P P+ CSK+LI + + VP+ KL+ +LG + A+ Sbjct: 389 KLSLELGFDVKFTPVATPYFCSKYLI-----NTEDRIFVVPDIFKLVTKLGRVFARTKAE 443 Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA-ALESLGKIF 80 E ++S+ DTI F V+ +A +Y +Y A A+ +G F Sbjct: 444 GL-ETFESFKDTIKWFGRDDVVCLLAYYHQEKYGPSKHVYDAACAIHCIGANF 495 [176][TOP] >UniRef100_Q806Y8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cucumber yellows virus RepID=Q806Y8_9CLOS Length = 505 Score = 62.4 bits (150), Expect = 2e-08 Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL + Y+L D + ++ SGDDSLI + + L ++Q Sbjct: 326 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 382 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233 F +EAKF N P+ CSKF+I GS VL P+P++ +L S + ++ Sbjct: 383 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGEM 437 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E Y S+ D + +N I V ++ + RY Sbjct: 438 LRERYTSYKDLMVGYNLDTNIILVDSLISVRY 469 [177][TOP] >UniRef100_Q6VRA8 ORF 1a/1b fusion polyprotein n=2 Tax=Beet pseudo-yellows virus RepID=Q6VRA8_9CLOS Length = 2441 Score = 62.4 bits (150), Expect = 2e-08 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL + Y+L D + ++ SGDDSLI + + L ++Q Sbjct: 2262 QRRTGSPNTWLSNTLVTLGIVLSTYDLRD--IDLLLVSGDDSLIFSRKSL-KNQVNEINR 2318 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233 F +EAKF N P+ CSKF+I GS VL P+P++ +L +D + Sbjct: 2319 DFGMEAKFIENSVPYFCSKFIIED---RGSIRVL--PDPVRFFEKLSVPMSLSDFESGVM 2373 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E Y S+ D + +N I V A+ + RY Sbjct: 2374 LRERYTSYKDLMVGYNLDTNIILVDALISVRY 2405 [178][TOP] >UniRef100_A2ID04 P349 (Fragment) n=2 Tax=Citrus tristeza virus RepID=A2ID04_9CLOS Length = 264 Score = 61.6 bits (148), Expect = 4e-08 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 3/127 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLVSGDDSLIYSSEKISNFSSEICLE 201 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQNKLTDDELFE 255 Query: 223 WYQSWID 203 + S+ D Sbjct: 256 LFTSFKD 262 [179][TOP] >UniRef100_B8YDL2 RdRp protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=B8YDL2_9CLOS Length = 477 Score = 61.2 bits (147), Expect = 5e-08 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + + E Sbjct: 249 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSRAPISNFSSEICLE 306 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K +P+P KLL++LG+ K+ D E Sbjct: 307 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQYKLTDDELFE 360 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 361 LFTSFKDITQDFGDQVVLEKLKFLVEAKY 389 [180][TOP] >UniRef100_B0F3U3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus tristeza virus RepID=B0F3U3_9CLOS Length = 508 Score = 61.2 bits (147), Expect = 5e-08 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + + E Sbjct: 280 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSRAPISNFSSEICLE 337 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K +P+P KLL++LG+ K+ D E Sbjct: 338 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYKLLVKLGAPQYKLTDDELFE 391 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D F D V+ + + +Y Sbjct: 392 LFTSFKDITQDFGDQVVLEKLKFLVEAKY 420 [181][TOP] >UniRef100_A0MBW4 Polymerase (Fragment) n=1 Tax=Raspberry leaf mottle virus RepID=A0MBW4_9CLOS Length = 467 Score = 61.2 bits (147), Expect = 5e-08 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ +D Sbjct: 249 QRRSGGSNTWIGNSLVTLGLLSMYYDV--SKFRLLLISGDDSLIYSDEKI-KDHSSQICL 305 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK---VNADIFD 227 E KF + P+ CSKF++ +GS VP+P KLL++LG + D+F Sbjct: 306 ETGFETKFLSPSVPYFCSKFVVQ----TGSMTYF-VPDPYKLLVKLGGSTPFVTDVDLF- 359 Query: 226 EWYQSWIDTIGVFNDHHVI 170 E + S+ D F DH V+ Sbjct: 360 EAFVSFRDLTRAF-DHQVM 377 [182][TOP] >UniRef100_Q99FM0 Putative RNA-dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q99FM0_9CLOS Length = 180 Score = 60.8 bits (146), Expect = 7e-08 Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 7/146 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG + T+LGNTIV + L +V + DPN FV SGDDSL+ L RD + Sbjct: 44 QRRTGGSNTWLGNTIVNMVLLAYVKD-FDPNT-FVCFSGDDSLV-----LSRDPIYFDFF 96 Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNAD 236 +LE F P P+ CSK+LI + + VP+ KL+ +LG + A+ Sbjct: 97 KLSLELGFDVKFTPVATPYFCSKYLI-----NTEDRIFVVPDIFKLVTKLGRVFARTKAE 151 Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVA 158 E ++S+ DTI F V+ +A Sbjct: 152 GL-ETFESFKDTIKWFGRDDVVCLLA 176 [183][TOP] >UniRef100_Q08534 Methyltransferase/helicase/RNA-directed RNA polymerase n=3 Tax=Beet yellows virus RepID=R1AB_BYVU Length = 3094 Score = 60.8 bits (146), Expect = 7e-08 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QR++G + T++GN+I TL L Y K + SGDDSLI + + + + T Sbjct: 2879 QRKSGASNTWIGNSIETLGILSMFY--YTNRFKALFVSGDDSLIFSESPIRNSADAMCTE 2936 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK--VNADIFDE 224 L E KF + P+ CSKF + ++G V VP+P KLL++LG+ K V+ + E Sbjct: 2937 L-GFETKFLTPSVPYFCSKFFV----MTGHDVFF-VPDPYKLLVKLGASKDEVDDEFLFE 2990 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 + S+ D D VI + + +Y Sbjct: 2991 VFTSFRDLTKDLVDERVIELLTHLVHSKY 3019 [184][TOP] >UniRef100_A2ID01 P349 (Fragment) n=1 Tax=Citrus tristeza virus RepID=A2ID01_9CLOS Length = 264 Score = 60.5 bits (145), Expect = 9e-08 Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 3/127 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + E++ E Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFELLLISGDDSLIYSKEKIGNFSSEICLE 201 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K VP+P KLL++LG+ K+ D E Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQYKLTDDELFE 255 Query: 223 WYQSWID 203 + S+ D Sbjct: 256 LFTSFKD 262 [185][TOP] >UniRef100_UPI00003FE529 RNA-dependent RNA polymerase n=1 Tax=Potato yellow vein virus RepID=UPI00003FE529 Length = 505 Score = 60.1 bits (144), Expect = 1e-07 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+ T+A + YNL D V+ + SGDDSLI + L + + Sbjct: 326 QRRTGSPNTWLSNTLTTMAVVLSSYNLDD--VELFLVSGDDSLIFSKYPLDNRTQRM-NV 382 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221 F +EAKF N P+ CSKF+I + +P+P++ +L S V+ ++ W Sbjct: 383 DFGMEAKFIENSVPYFCSKFII-----QDRGRIKVIPDPVRFFEKL-SVPVSYQDYENWN 436 Query: 220 -----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101 + S+ D + F+ V M + RY P++ AAL Sbjct: 437 MIRERFISYKDLMVEFDYDTSCMLVDVMVSKRY-SLPNMASYAAL 480 [186][TOP] >UniRef100_Q70PI7 Polyprotein n=2 Tax=Potato yellow vein virus RepID=Q70PI7_9CLOS Length = 2475 Score = 60.1 bits (144), Expect = 1e-07 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 7/165 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+ T+A + YNL D V+ + SGDDSLI + L + + Sbjct: 2296 QRRTGSPNTWLSNTLTTMAVVLSSYNLDD--VELFLVSGDDSLIFSKYPLDNRTQRM-NV 2352 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221 F +EAKF N P+ CSKF+I + +P+P++ +L S V+ ++ W Sbjct: 2353 DFGMEAKFIENSVPYFCSKFII-----QDRGRIKVIPDPVRFFEKL-SVPVSYQDYENWN 2406 Query: 220 -----YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAAL 101 + S+ D + F+ V M + RY P++ AAL Sbjct: 2407 MIRERFISYKDLMVEFDYDTSCMLVDVMVSKRY-SLPNMASYAAL 2450 [187][TOP] >UniRef100_B7FAV3 RNA dependent RNA polymerase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 10 RepID=B7FAV3_9CLOS Length = 515 Score = 60.1 bits (144), Expect = 1e-07 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPN-VKFVVASGDDSLIGTVEELPRDQEFLFT 398 QRRTG A T++GNTI+ +C + ++PN +GDDSL+ + P ++ Sbjct: 332 QRRTGAANTWIGNTIIN---MCLLSQSVNPNEFSACCFAGDDSLL-IYKNKPNIAFDVYE 387 Query: 397 TLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDE 224 T F+ + K F + C KFLI+ G K + VP+PLKL ++LG ++ D + E Sbjct: 388 TKFDFDVKFFDCAAMYFCGKFLIS----DGLKTHV-VPDPLKLFVKLGKERPPEDKVLVE 442 Query: 223 WYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116 ++S+ D F ++ V+ + A +Y R + Y Sbjct: 443 NWRSFYDVTKAFANNTVLEKLVDQFALKYSRSHNAY 478 [188][TOP] >UniRef100_Q5G7G6 Polymerase (Fragment) n=1 Tax=Mint virus 1 RepID=Q5G7G6_9CLOS Length = 459 Score = 59.7 bits (143), Expect = 2e-07 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 8/182 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G + T++GN++VTL L Y + + + FV SGDDSL+ + + E + Sbjct: 250 QRRSGASNTWIGNSVVTLGVLSMYYRVDELSALFV--SGDDSLMYSRSPIRNHAEAICIE 307 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK---VNADIFD 227 E KF + P+ CSKF++ G K VP+P KL+++LG+ + + D+F Sbjct: 308 T-GFETKFLSPSVPYFCSKFVVH----CGHKTYF-VPDPFKLMVKLGAVRNELTDKDLF- 360 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEA--ALESLGKIFAS--KTLCK 59 E + S+ D F+D V+ + + +Y + + L A ++ L F+S K K Sbjct: 361 EVFTSFRDLTKDFDDERVLVKLNYLLESKYGKVSAFALPALRSIHCLASNFSSFVKLFDK 420 Query: 58 EC 53 C Sbjct: 421 SC 422 [189][TOP] >UniRef100_UPI000019AB7D polyprotein n=2 Tax=Cucurbit yellow stunting disorder virus RepID=UPI000019AB7D Length = 2482 Score = 59.3 bits (142), Expect = 2e-07 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VT+ L YNL D + ++ SGDDSLI + + LP + Sbjct: 2303 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2359 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233 F EAKF N P+ CSK++ T V VP+ ++ +L + +D I Sbjct: 2360 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2414 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53 E + S+ D + + V + R+ P + AAL + +FA+ ++ Sbjct: 2415 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2472 Query: 52 LFNEKHESNV 23 LF+E+ N+ Sbjct: 2473 LFDERFSVNI 2482 [190][TOP] >UniRef100_Q8JUU9 1b (Fragment) n=1 Tax=Cucurbit yellow stunting disorder virus RepID=Q8JUU9_9CLOS Length = 514 Score = 59.3 bits (142), Expect = 2e-07 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VT+ L YNL D + ++ SGDDSLI + + LP + Sbjct: 335 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 391 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233 F EAKF N P+ CSK++ T V VP+ ++ +L + +D I Sbjct: 392 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 446 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53 E + S+ D + + V + R+ P + AAL + +FA+ ++ Sbjct: 447 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 504 Query: 52 LFNEKHESNV 23 LF+E+ N+ Sbjct: 505 LFDERFSVNI 514 [191][TOP] >UniRef100_Q70UT1 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus RepID=Q70UT1_9CLOS Length = 2483 Score = 59.3 bits (142), Expect = 2e-07 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VT+ L YNL D + ++ SGDDSLI + + LP + Sbjct: 2304 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2360 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233 F EAKF N P+ CSK++ T V VP+ ++ +L + +D I Sbjct: 2361 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2415 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53 E + S+ D + + V + R+ P + AAL + +FA+ ++ Sbjct: 2416 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2473 Query: 52 LFNEKHESNV 23 LF+E+ N+ Sbjct: 2474 LFDERFSVNI 2483 [192][TOP] >UniRef100_A5JM40 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus RepID=A5JM40_9CLOS Length = 2483 Score = 59.3 bits (142), Expect = 2e-07 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 6/190 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VT+ L YNL D + ++ SGDDSLI + + LP + Sbjct: 2304 QRRTGSPNTWLSNTLVTMGILLSQYNLDD--IDLMLVSGDDSLIFSKKPLPNVTAEI-NK 2360 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-----I 233 F EAKF N P+ CSK++ T V VP+ ++ +L + +D I Sbjct: 2361 DFGFEAKFLMNSVPYFCSKYIFT-----DDGKVRVVPDAQRMFEKLSNPIRRSDFEEGTI 2415 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53 E + S+ D + + V + R+ P + AAL + +FA+ ++ Sbjct: 2416 LKERFISYKDLMYYYRFDTTCLAVDRLICKRH-GLPEMSSYAALCYIHCMFANVVAFRK- 2473 Query: 52 LFNEKHESNV 23 LF+E+ N+ Sbjct: 2474 LFDERFSVNI 2483 [193][TOP] >UniRef100_UPI00004A3B9A ORF 1b n=1 Tax=Strawberry pallidosis-associated virus RepID=UPI00004A3B9A Length = 505 Score = 58.5 bits (140), Expect = 4e-07 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTLA + Y+L D + ++ SGDDSLI + ++L + Sbjct: 326 QRRTGSPNTWLSNTLVTLAMILTHYDLDD--IDLLLVSGDDSLIFSRKDLGNKANEI-NR 382 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230 F +EAKF N P+ CSKF+I G V+P P L + I L +V D+ Sbjct: 383 DFGMEAKFIMNSVPYFCSKFIIED---RGEIKVVPDPVRFFEKLSVPISLQDFQV-GDLL 438 Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D + ++ VI V + + RY Sbjct: 439 RERFVSFKDLMIGYDSDAVIILVDNLISIRY 469 [194][TOP] >UniRef100_Q6JGW4 ORF 1a/1b fusion polyprotein n=2 Tax=Strawberry pallidosis-associated virus RepID=Q6JGW4_9CLOS Length = 2451 Score = 58.5 bits (140), Expect = 4e-07 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTLA + Y+L D + ++ SGDDSLI + ++L + Sbjct: 2272 QRRTGSPNTWLSNTLVTLAMILTHYDLDD--IDLLLVSGDDSLIFSRKDLGNKANEI-NR 2328 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVP----NPLKLLIRLGSKKVNADIF 230 F +EAKF N P+ CSKF+I G V+P P L + I L +V D+ Sbjct: 2329 DFGMEAKFIMNSVPYFCSKFIIED---RGEIKVVPDPVRFFEKLSVPISLQDFQV-GDLL 2384 Query: 229 DEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D + ++ VI V + + RY Sbjct: 2385 RERFVSFKDLMIGYDSDAVIILVDNLISIRY 2415 [195][TOP] >UniRef100_Q001T5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato chlorosis virus RepID=Q001T5_9CLOS Length = 504 Score = 58.5 bits (140), Expect = 4e-07 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VT+ + VY+L D + + SGDDSLI + + L + + Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDLDD--IDLFLVSGDDSLIFSSKPLKNKTDEI-NR 381 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233 F EAK N P+ CSK++I S + VP+P++ +L ++ + Sbjct: 382 DFGFEAKMIENSVPYFCSKYII-----SDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTL 436 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E ++S+ D + F+ V A+ +RY Sbjct: 437 MREKFRSYKDLMKDFDYDTTCVLVDALVCYRY 468 [196][TOP] >UniRef100_C7B977 ORF 1a/1b fusion protein n=2 Tax=Tomato infectious chlorosis virus RepID=C7B977_9CLOS Length = 2394 Score = 58.5 bits (140), Expect = 4e-07 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 7/153 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+ TL L Y L D + ++ SGDDSLI + +LP + Sbjct: 2215 QRRTGSPNTWLSNTLATLGMLMSFYKLED--IDLILVSGDDSLIFSRRKLPNVVGEI-NK 2271 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFD--- 227 F +EAK N + CSK++I S + VP+P++ +L S V D D Sbjct: 2272 CFGMEAKLIENSVAYFCSKYII-----SDKGKIKVVPDPVRFFEKL-STPVRLDEIDSKL 2325 Query: 226 ---EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E Y S+ D + ++ + V A+ +R+ Sbjct: 2326 SLRERYISFKDLMRGYDLDGTVMMVDALVCYRH 2358 [197][TOP] >UniRef100_A9YRU9 RNA dependent RNA polymerase (Fragment) n=2 Tax=Tomato chlorosis virus RepID=A9YRU9_9CLOS Length = 504 Score = 58.5 bits (140), Expect = 4e-07 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VT+ + VY+L D + + SGDDSLI + + L + + Sbjct: 325 QRRTGSPNTWLSNTLVTMGIILSVYDLDD--IDLFLVSGDDSLIFSSKPLKNKTDEI-NR 381 Query: 394 LFNLEAKFPHNQ-PFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG-----SKKVNADI 233 F EAK N P+ CSK++I S + VP+P++ +L ++ + Sbjct: 382 DFGFEAKMIENSVPYFCSKYII-----SDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTL 436 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E ++S+ D + F+ V A+ +RY Sbjct: 437 MREKFRSYKDLMKDFDYDTTCVLVDALVCYRY 468 [198][TOP] >UniRef100_Q991N2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q991N2_9CLOS Length = 1980 Score = 58.2 bits (139), Expect = 5e-07 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG + T+LGNTIV + L +V + DPN FV SGDDSL+ + + + D F + Sbjct: 1859 QRRTGGSNTWLGNTIVNMVSLAYVKD-FDPNT-FVCFSGDDSLVLSRDPIYFD-FFKLSL 1915 Query: 394 LFNLEAKF-PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS--KKVNADIFDE 224 L+ K P P+ CSK+LI + + + VP+ KL+ +LG + A+ E Sbjct: 1916 ELGLDVKLTPVATPYFCSKYLI-----NTEERIFIVPDIFKLVTKLGRVFARTKAEGL-E 1969 Query: 223 WYQSWIDTI 197 ++S+ DTI Sbjct: 1970 TFESFKDTI 1978 [199][TOP] >UniRef100_C6FJ53 ORF1a/1b fusion polyprotein n=2 Tax=Lettuce chlorosis virus RepID=C6FJ53_9CLOS Length = 2495 Score = 58.2 bits (139), Expect = 5e-07 Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL L Y+L D ++ ++ SGDDSLI + +LP + Sbjct: 2316 QRRTGSPNTWLSNTLVTLGILMSEYDLDD--IELILVSGDDSLIFSKHDLPNVTAEI-NR 2372 Query: 394 LFNLEAKFPHNQ-PFICSKFL 335 F EAKF N P+ CSKF+ Sbjct: 2373 DFGFEAKFLMNSVPYFCSKFI 2393 [200][TOP] >UniRef100_B2BZW1 ORF1b n=1 Tax=Bean yellow disorder virus RepID=B2BZW1_9CLOS Length = 521 Score = 57.8 bits (138), Expect = 6e-07 Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG T+L NT+VTL L YNL D ++ ++ SGDDSLI + LP + Sbjct: 342 QRRTGSPNTWLSNTLVTLGILMTEYNLDD--MELILVSGDDSLIFSKNPLPNVTAEI-NR 398 Query: 394 LFNLEAKFPHNQ-PFICSKFL 335 F EAKF N P+ CSKF+ Sbjct: 399 DFGFEAKFLMNSVPYFCSKFI 419 [201][TOP] >UniRef100_Q9JAD3 207K protein n=2 Tax=Soil-borne cereal mosaic virus RepID=Q9JAD3_9VIRU Length = 1816 Score = 57.4 bits (137), Expect = 8e-07 Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 6/191 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401 +Q+++G+ TY NT A L + ++ KF++ GDDSLI ++L D Sbjct: 1630 YQQKSGNCDTYGSNT--WSAALALLESMPLEKAKFMIFGGDDSLILFPKQLCIEDPCRRL 1687 Query: 400 TTLFNLEAK---FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADI 233 +L+N + K F HN C KFL+ + G+K P+P+KLL +LG K V+ + Sbjct: 1688 ASLWNFDCKLFNFRHNM--FCGKFLLKI----GNKFKF-APDPMKLLTKLGRKDIVDGKL 1740 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGK-IFASKTLCKE 56 E + S D G + D+ ++ +A RY R + A L +L K IF K L Sbjct: 1741 LSEIFVSMGDNYGSYRDYRILEQLAVAVQERY--RTNEDPTAMLITLKKYIFDFKLLAS- 1797 Query: 55 CLFNEKHESNV 23 LFN E V Sbjct: 1798 -LFNYSGEFEV 1807 [202][TOP] >UniRef100_Q9J942 194 kDa protein n=2 Tax=Tobacco rattle virus RepID=Q9J942_9VIRU Length = 1707 Score = 57.4 bits (137), Expect = 8e-07 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404 +Q+++GDA TY N+ TL L L V GDDSLI PR +F+ Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563 Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239 T +N E K F ++ P C KFL L S VP+P+K+L +LG K + + Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618 Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62 E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676 Query: 61 KECLFNEKHESNVKIKPRRV 2 LF + E++ ++ P +V Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692 [203][TOP] >UniRef100_Q9DL34 RNA-dependent RNA polymerase n=2 Tax=Tobacco rattle virus RepID=Q9DL34_9VIRU Length = 1707 Score = 57.4 bits (137), Expect = 8e-07 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404 +Q+++GDA TY N+ TL L L V GDDSLI PR +F+ Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563 Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239 T +N E K F ++ P C KFL L S VP+P+K+L +LG K + + Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618 Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62 E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676 Query: 61 KECLFNEKHESNVKIKPRRV 2 LF + E++ ++ P +V Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692 [204][TOP] >UniRef100_Q8JU32 Putative replicase n=2 Tax=Tobacco rattle virus RepID=Q8JU32_9VIRU Length = 1707 Score = 57.4 bits (137), Expect = 8e-07 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404 +Q+++GDA TY N+ TL L L V GDDSLI PR +F+ Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563 Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239 T +N E K F ++ P C KFL L S VP+P+K+L +LG K + + Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618 Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62 E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676 Query: 61 KECLFNEKHESNVKIKPRRV 2 LF + E++ ++ P +V Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692 [205][TOP] >UniRef100_Q2XP15 RdRp (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q2XP15_9CLOS Length = 475 Score = 57.4 bits (137), Expect = 8e-07 Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 4/150 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ ++ SGDD LI + E++ + Sbjct: 266 QRRSGGSNTWIGNSLVTLGILSLYYDV--SKFDLLLVSGDDFLIYSSEKISNFSSQICLE 323 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGS---KKVNADIFD 227 T F + P + P+ SKF++ +G+K VP+P KLL++LG+ K + ++F Sbjct: 324 TGFETKFMSP-SVPYFSSKFVVQ----TGNKTCF-VPDPYKLLVKLGAPQIKLTDVELF- 376 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E + S+ D F D V+ + + +Y Sbjct: 377 ELFSSFKDMTQDFGDQVVLEKLKLLVEPKY 406 [206][TOP] >UniRef100_O56250 RNA polymerase n=1 Tax=Tobacco rattle virus RepID=O56250_9VIRU Length = 1707 Score = 57.4 bits (137), Expect = 8e-07 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404 +Q+++GDA TY N+ TL L L V GDDSLI PR +F+ Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563 Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239 T +N E K F ++ P C KFL L S VP+P+K+L +LG K + + Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618 Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62 E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676 Query: 61 KECLFNEKHESNVKIKPRRV 2 LF + E++ ++ P +V Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692 [207][TOP] >UniRef100_P05080 134 kDa protein n=2 Tax=Tobacco rattle virus RepID=194K_TRVSY Length = 1707 Score = 57.4 bits (137), Expect = 8e-07 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404 +Q+++GDA TY N+ TL L L V GDDSLI PR +F+ Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563 Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239 T +N E K F ++ P C KFL L S VP+P+K+L +LG K + + Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618 Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62 E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676 Query: 61 KECLFNEKHESNVKIKPRRV 2 LF + E++ ++ P +V Sbjct: 1677 --TLFRD--ENDKELNPAKV 1692 [208][TOP] >UniRef100_Q70BW7 Replicase n=2 Tax=Tobacco rattle virus RepID=Q70BW7_9VIRU Length = 1707 Score = 57.0 bits (136), Expect = 1e-06 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404 +Q+++GDA TY N+ TL L L V GDDSLI PR +F+ Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 1563 Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239 T +N E K F ++ P C KFL L S VP+P+K+L +LG K + + Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618 Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62 E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676 Query: 61 KECLFNEKHESNVKIKPRRV 2 LF + E++ ++ P +V Sbjct: 1677 --TLFRD--ENDKELNPAQV 1692 [209][TOP] >UniRef100_Q0GK54 RdRp (Fragment) n=1 Tax=Strawberry chlorotic fleck associated virus RepID=Q0GK54_9CLOS Length = 469 Score = 57.0 bits (136), Expect = 1e-06 Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 7/153 (4%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G + T++GN++VTL + Y++ + + SGDDSLI + ++ F T Sbjct: 249 QRRSGGSNTWIGNSLVTLGIIALYYDV--SKFRLLAISGDDSLIYSDNKIAN-----FAT 301 Query: 394 LFNLEAKF-----PHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLG--SKKVNAD 236 LE+ F + P+ CSKF++ +G+ V VP+P KL+++LG +K V + Sbjct: 302 EICLESGFETKFMSPSVPYFCSKFVVQ----TGTNTVF-VPDPYKLMVKLGASNKFVTNE 356 Query: 235 IFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 E Y S+ D + + V+ + + +Y Sbjct: 357 GLFEVYTSFRDLTKDYGNQIVLERLKHLVEKKY 389 [210][TOP] >UniRef100_B2BD48 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug wilt-associated virus 1 RepID=B2BD48_9CLOS Length = 520 Score = 57.0 bits (136), Expect = 1e-06 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 2/155 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG A T++GNT++ + L ++ N V +GDDSLI + +P ++ Sbjct: 332 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPGVNFDVYDL 388 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADIFDEW 221 + + K F + C KFLI S + +P+P K+ ++LG ++ V+ I E Sbjct: 389 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKLGKERPVSDKILLEQ 443 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116 +QS+ D + I + + A++++ P Y Sbjct: 444 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 478 [211][TOP] >UniRef100_A7DYV4 Putative 57-kDa polymerase (Fragment) n=1 Tax=Tobacco rattle virus RepID=A7DYV4_9VIRU Length = 500 Score = 57.0 bits (136), Expect = 1e-06 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 8/200 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404 +Q+++GDA TY N+ TL L L V GDDSLI PR +F+ Sbjct: 303 YQQKSGDADTYNANSDRTLCALLSELPL--EKAVMVTYGGDDSLIA----FPRGTQFVDP 356 Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239 T +N E K F ++ P C KFL L S VP+P+K+L +LG K + + Sbjct: 357 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 411 Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62 E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC Sbjct: 412 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 469 Query: 61 KECLFNEKHESNVKIKPRRV 2 LF + E++ ++ P +V Sbjct: 470 --TLFRD--ENDKELNPAQV 485 [212][TOP] >UniRef100_P89202 Replicase small subunit n=1 Tax=Sunn-hemp mosaic virus RepID=RDRP_SHMV Length = 1629 Score = 57.0 bits (136), Expect = 1e-06 Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELPR----- 419 +QR++GD T++GNTI+ ACLC + P K A GDDS+I LPR Sbjct: 1457 YQRKSGDVTTFIGNTIIIAACLCSIL----PMEKVFKAGFCGDDSII----YLPRNLLYP 1508 Query: 418 DQEFLFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV- 245 D + + ++N EAK F + C ++ L + + +P+PLK++ +LG K + Sbjct: 1509 DIQSVSNNMWNFEAKLFKKLHGYFCGRY-----XLRNGRYLRLLPDPLKIITKLGCKAIK 1563 Query: 244 NADIFDEWYQSWID 203 + D +E+ S D Sbjct: 1564 DWDHLEEFRISMFD 1577 [213][TOP] >UniRef100_B2BD55 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug wilt-associated virus 1 RepID=B2BD55_9CLOS Length = 520 Score = 56.6 bits (135), Expect = 1e-06 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG A T++GNT++ + L ++ N V +GDDSLI + +P ++ Sbjct: 332 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGIPGVNFDVYDL 388 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221 + + K F + C KFLI S + +P+P K+ ++ G ++ D I E Sbjct: 389 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 443 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116 +QS+ D + I + + A++++ P Y Sbjct: 444 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 478 [214][TOP] >UniRef100_Q8QL61 RNA dependent RNA polymerase (Fragment) n=1 Tax=Olive leaf yellowing-associated virus RepID=Q8QL61_9CLOS Length = 337 Score = 56.2 bits (134), Expect = 2e-06 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRR+G A T+ GN ++TL L Y+ N V +GDDS++ + + + + Sbjct: 110 QRRSGTANTFFGNCMITLMMLSLYYDFR--NFSAVAVAGDDSILFSKTPIVDHSDHMILD 167 Query: 394 LFNLEAKFPHNQP-FICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNADIFDEW- 221 EAKF ++P + CS+F+ L + + VP+P K++++LG + + W Sbjct: 168 -NGFEAKFLRDKPAYFCSRFI-----LFANDYIYFVPDPYKVIVKLGKPLTDVTVNGLWE 221 Query: 220 -YQSWIDTIGVFNDHHVIRCVAAMTAHRY 137 Y S+ D N V+ +A T RY Sbjct: 222 RYISFKDYTKYLNFETVVWHLAIATNIRY 250 [215][TOP] >UniRef100_B2BD51 RNA dependant RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug wilt-associated virus 1 RepID=B2BD51_9CLOS Length = 413 Score = 56.2 bits (134), Expect = 2e-06 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG A T++GNT++ + L ++ N V +GDDSLI + +P ++ Sbjct: 225 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPGVNFDVYDL 281 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221 + + K F + C KFLI S + +P+P K+ ++ G ++ D I E Sbjct: 282 KYEFDVKYFDCASKYFCGKFLI-----ENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 336 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116 +QS+ D + I + + A++++ P Y Sbjct: 337 WQSFFDITEAYTSDANISKLVSSFANKWVSSPHAY 371 [216][TOP] >UniRef100_Q8V3A3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pineapple mealybug wilt-associated virus 1 RepID=Q8V3A3_9CLOS Length = 525 Score = 55.8 bits (133), Expect = 2e-06 Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 2/155 (1%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFLFTT 395 QRRTG A T++GNT++ + L ++ N V +GDDSLI + +PR ++ Sbjct: 337 QRRTGAANTWIGNTVINMMLLSQSVDVTSLNA--VCFAGDDSLI-LKKGVPRVNFDVYDL 393 Query: 394 LFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNAD-IFDEW 221 + + K F + C KF ++ S + +P+P K+ ++ G ++ D I E Sbjct: 394 KYEFDVKYFDCASKYFCGKF-----SIENSGKIKVMPDPFKIFVKFGKERPETDKILLEQ 448 Query: 220 YQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLY 116 +QS D + I + + A++++ P Y Sbjct: 449 WQSLFDITEAYTSDANISKLVSSFANKWVSSPHAY 483 [217][TOP] >UniRef100_Q91E49 Replicase large subunit n=2 Tax=Kyuri green mottle mosaic virus RepID=Q91E49_9VIRU Length = 1670 Score = 55.5 bits (132), Expect = 3e-06 Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407 +QR++GD T++GNT + AC+ M P K AS GDDSLI L D + Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MVPLSKCFKASFCGDDSLIYMPPNLEYPDIQA 1551 Query: 406 LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239 ++N EAK F + C K++I SK + P+PLKL+ +LG+K + + Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHSKGCIVYPDPLKLISKLGNKSLES 1603 [218][TOP] >UniRef100_A2ID07 P349 (Fragment) n=1 Tax=Citrus tristeza virus RepID=A2ID07_9CLOS Length = 264 Score = 55.5 bits (132), Expect = 3e-06 Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 3/127 (2%) Frame = -3 Query: 574 QRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPR-DQEFLFT 398 QRR+G + T++GN++VTL L Y++ + ++ SGDDSLI + + E Sbjct: 144 QRRSGGSNTWIGNSLVTLGILSLYYDV--SRFELLLISGDDSLIYSRAPISNFSSEICLE 201 Query: 397 TLFNLEAKFPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSK--KVNADIFDE 224 T F + P + P+ CSKF++ +G+K +P+P +LL++LG+ K+ D E Sbjct: 202 TGFETKFMSP-SVPYFCSKFVVQ----TGNKTCF-IPDPYQLLVKLGAPQYKLTDDELFE 255 Query: 223 WYQSWID 203 + S+ D Sbjct: 256 LFTSFKD 262 [219][TOP] >UniRef100_Q9JGJ6 59-kDa readthrough protein (Fragment) n=1 Tax=Sorghum chlorotic spot virus RepID=Q9JGJ6_9VIRU Length = 507 Score = 55.1 bits (131), Expect = 4e-06 Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 3/174 (1%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401 +Q+++G+ TY NT L L +F++ GDDSLI EE+ D Sbjct: 321 YQQKSGNCDTYGSNTWSAALALLETMPL--EKAEFMIFGGDDSLILFPEEVVVEDPCRRL 378 Query: 400 TTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKK-VNADIFD 227 +L+N + K F N C KFL+ + G + P+P+KL+ +LG K V+ + Sbjct: 379 ASLWNFDCKLFSFNHNLFCGKFLLKI----GDRYRFS-PDPVKLMTKLGRKDIVDGQVLS 433 Query: 226 EWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTL 65 E + S D + D ++ +AA RY R + AAL SL K + +L Sbjct: 434 EIFVSIGDNYKSYRDFRILSALAAAVQERY--RTNEDALAALISLRKYISDFSL 485 [220][TOP] >UniRef100_D0EWY6 194 kDa readthrough protein n=2 Tax=Tobacco rattle virus RepID=D0EWY6_9VIRU Length = 1707 Score = 54.7 bits (130), Expect = 5e-06 Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 8/200 (4%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELPRDQEFL-- 404 +Q+++GDA TY N+ TL L L V GDDSLI P+ +F Sbjct: 1510 YQQKSGDADTYNANSDRTLCALLSELPLK--KAVMVTYGGDDSLIA----FPKGTQFTDP 1563 Query: 403 ---FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NA 239 T +N E K F ++ P C KFL L S VP+P+K+L +LG K + + Sbjct: 1564 CPKLATKWNFECKIFKYDVPMFCGKFL-----LKTSSCYEFVPDPVKVLTKLGKKSIKDV 1618 Query: 238 DIFDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYL-RRPSLYLEAALESLGKIFASKTLC 62 E Y S D+ ++ V+ ++ + RYL + S++ AL K F + LC Sbjct: 1619 QHLAEIYISLNDSNRALGNYMVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTA--LC 1676 Query: 61 KECLFNEKHESNVKIKPRRV 2 LF + E + ++ P +V Sbjct: 1677 --TLFRD--EKDKELNPSQV 1692 [221][TOP] >UniRef100_Q9JAD2 207K protein n=2 Tax=Soil-borne cereal mosaic virus RepID=Q9JAD2_9VIRU Length = 1816 Score = 54.3 bits (129), Expect = 7e-06 Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 6/191 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVASGDDSLIGTVEELP-RDQEFLF 401 +Q+++G+ TY NT A L + ++ KF++ GDDS I ++L D Sbjct: 1630 YQQKSGNCDTYGSNT--WSAALALLESMPLEKAKFMIFGGDDSPILFPKQLCIEDPCRRL 1687 Query: 400 TTLFNLEAK---FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKV-NADI 233 +L+N + K F HN C KFL+ + G+K P+P+KLL +LG K + + + Sbjct: 1688 ASLWNFDCKLFNFRHNM--FCGKFLLKI----GNKFKF-APDPMKLLTKLGRKDIADGKL 1740 Query: 232 FDEWYQSWIDTIGVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGK-IFASKTLCKE 56 E + S D G + D+ ++ +A RY R + A L +L K IF K L Sbjct: 1741 LSEIFVSMGDNYGSYRDYRILEQLAVAVQERY--RTNEDPTAMLITLKKYIFDFKLLAS- 1797 Query: 55 CLFNEKHESNV 23 LFN E V Sbjct: 1798 -LFNYSGEFEV 1807 [222][TOP] >UniRef100_Q9DKW5 Replicase large subunit n=1 Tax=Cucumber fruit mottle mosaic virus RepID=Q9DKW5_9VIRU Length = 1666 Score = 53.9 bits (128), Expect = 9e-06 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 5/194 (2%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVA-SGDDSLIGTVEELP-RDQEFL 404 +QR++GD T++GNT + AC V +++ + F A GDDSLI L D + Sbjct: 1492 YQRKSGDVTTFIGNTFIIAAC---VASMVPLSRSFKAAFCGDDSLIYMPPNLEYNDIQST 1548 Query: 403 FTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA-DIF 230 ++N EAK + + C K++I + + P+PLKL+ +LG+K + + D Sbjct: 1549 ANLVWNFEAKLYKKKYGYFCGKYVI-----HHANGCIVYPDPLKLISKLGNKSLESYDHL 1603 Query: 229 DEWYQSWIDTI-GVFNDHHVIRCVAAMTAHRYLRRPSLYLEAALESLGKIFASKTLCKEC 53 +E+ S +D +FN + A+ H Y PS+ G FA +LCK Sbjct: 1604 EEFRISLMDVAKPLFNAAYFHLLDDAI--HEYF--PSVG--------GSTFAISSLCK-Y 1650 Query: 52 LFNEKHESNVKIKP 11 L N++ ++ IKP Sbjct: 1651 LSNKQLFGSLFIKP 1664 [223][TOP] >UniRef100_Q911R4 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus RepID=Q911R4_9VIRU Length = 1670 Score = 53.9 bits (128), Expect = 9e-06 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407 +QR++GD T++GNT + AC+ M P + AS GDDSLI L D + Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MIPLGRCFKASFCGDDSLIYMPPNLEYPDIQA 1551 Query: 406 LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239 ++N EAK F + C K++I +K + P+PLKL+ +LG+K V + Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHAKGCIVYPDPLKLISKLGNKSVES 1603 [224][TOP] >UniRef100_Q5W5U1 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus RepID=Q5W5U1_9VIRU Length = 1670 Score = 53.9 bits (128), Expect = 9e-06 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Frame = -3 Query: 577 FQRRTGDALTYLGNTIVTLACLCHVYNLMDPNVKFVVAS--GDDSLIGTVEELP-RDQEF 407 +QR++GD T++GNT + AC+ M P + AS GDDSLI L D + Sbjct: 1496 YQRKSGDVTTFIGNTFIIAACVAS----MIPLGRCFKASFCGDDSLIYMPPNLEYPDIQA 1551 Query: 406 LFTTLFNLEAK-FPHNQPFICSKFLITMPTLSGSKVVLPVPNPLKLLIRLGSKKVNA 239 ++N EAK F + C K++I +K + P+PLKL+ +LG+K V + Sbjct: 1552 TANLVWNFEAKLFKKRYGYFCGKYVI-----HHAKGCIVYPDPLKLISKLGNKSVES 1603