BB922755 ( RCE30213 )

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[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
           RepID=Q2MGQ5_MEDTR
          Length = 318

 Score =  264 bits (675), Expect = 3e-69
 Identities = 132/139 (94%), Positives = 137/139 (98%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEP+IHINEDLMESL+LEEKKEW+DSSPTRVFDIDPVTQQVMVVDPEAYSY
Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 239

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           DDEVIKKAEAMGKPGL+EI AKQDSFIFTVESTGAVKASQLL N+IEILKQKLDAVRLSE
Sbjct: 240 DDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSE 299

Query: 206 DTVEADDQFGELGAHMRGG 150
           DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318

[2][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
           communis RepID=B9RYB6_RICCO
          Length = 318

 Score =  248 bits (633), Expect = 2e-64
 Identities = 122/139 (87%), Positives = 134/139 (96%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEP+IHINEDLMESLSLEEK+ W++SSPT+VFDIDP TQQV+VVDPEAY+Y
Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 239

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           D+EVIKKAE+MGKPGLV I AK+DSFIFTVESTGA+KASQL+ NAIEILKQKLDAVRLSE
Sbjct: 240 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 299

Query: 206 DTVEADDQFGELGAHMRGG 150
           DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318

[3][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7P9N6_VITVI
          Length = 318

 Score =  240 bits (612), Expect = 6e-62
 Identities = 118/139 (84%), Positives = 131/139 (94%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEPEIHINEDLMESL+LEEK  W++SSPT+VFDID  +QQV+V D EAY+Y
Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           DDEV+KKAEAMGKPGLVEI AK+DSFIFTVESTGA+KASQL+ NAI++LKQKLDAVRLSE
Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299

Query: 206 DTVEADDQFGELGAHMRGG 150
           DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318

[4][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5B429_VITVI
          Length = 318

 Score =  240 bits (612), Expect = 6e-62
 Identities = 118/139 (84%), Positives = 131/139 (94%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEPEIHINEDLMESL+LEEK  W++SSPT+VFDID  +QQV+V D EAY+Y
Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           DDEV+KKAEAMGKPGLVEI AK+DSFIFTVESTGA+KASQL+ NAI++LKQKLDAVRLSE
Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299

Query: 206 DTVEADDQFGELGAHMRGG 150
           DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318

[5][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
          Length = 346

 Score =  238 bits (608), Expect = 2e-61
 Identities = 119/137 (86%), Positives = 130/137 (94%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEPEIHINEDLME+L+LEEK  WI+SSPT+VFDID VTQQV+VVDPEAY+Y
Sbjct: 185 SPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAYTY 244

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           DDEVIKKAEAMGK GL++I AK+DSFIFTVESTGAVKASQL+ NAIEILKQKLDAVRLS+
Sbjct: 245 DDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSD 304

Query: 206 DTVEADDQFGELGAHMR 156
           DTVEADDQFGELG HMR
Sbjct: 305 DTVEADDQFGELGVHMR 321

[6][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SHD1_PHYPA
          Length = 324

 Score =  236 bits (603), Expect = 7e-61
 Identities = 116/139 (83%), Positives = 131/139 (94%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTF YEPEIHINE LME+L+LEEK+EWIDSSPT+VF++DPV+QQV+VVDPEAY+Y
Sbjct: 184 SPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPEAYTY 243

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           D+EV+KKAEAMGKPGLVEI +K+DSFIFTVESTGA+KASQ+  NAIEILK KLDAVRLS 
Sbjct: 244 DEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSF 303

Query: 206 DTVEADDQFGELGAHMRGG 150
           DT EADDQFGELGAHMRGG
Sbjct: 304 DTEEADDQFGELGAHMRGG 322

[7][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
           Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
          Length = 319

 Score =  227 bits (579), Expect = 4e-58
 Identities = 113/139 (81%), Positives = 131/139 (94%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEP+I INED+M++LS EEK + I+SSPT+VF +DPVT+QV+VVDPEAY+Y
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           D+EVIKKAEAMGKPGL+EI+ K DSFIFTVESTGAVKASQL+ NAI++LKQKLDAVRLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300

Query: 206 DTVEADDQFGELGAHMRGG 150
           DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319

[8][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
           thaliana RepID=RPB3A_ARATH
          Length = 319

 Score =  227 bits (579), Expect = 4e-58
 Identities = 113/139 (81%), Positives = 131/139 (94%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEP+I INED+M++LS EEK + I+SSPT+VF +DPVT+QV+VVDPEAY+Y
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           D+EVIKKAEAMGKPGL+EI+ K DSFIFTVESTGAVKASQL+ NAI++LKQKLDAVRLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300

Query: 206 DTVEADDQFGELGAHMRGG 150
           DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319

[9][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
           thaliana RepID=RPB3B_ARATH
          Length = 319

 Score =  216 bits (551), Expect = 7e-55
 Identities = 107/139 (76%), Positives = 128/139 (92%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVT+MYEP+I INE++M +L+ EEK + I+SSPT+VF IDPVT QV+VVDPEAY+Y
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           D+EVIKKAEAMGKPGL+EI+ K DSF+FTVESTGA+KASQL+ NAI+ILKQKLDA+RLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300

Query: 206 DTVEADDQFGELGAHMRGG 150
           +TVEADDQFGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319

[10][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
          Length = 330

 Score =  199 bits (506), Expect = 1e-49
 Identities = 99/139 (71%), Positives = 120/139 (86%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEPEI INE+LME+L+LEEK+  ++SSPT+VF+IDP TQQV+V D EAY+Y
Sbjct: 196 SPAATVTFMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNIDPNTQQVVVEDAEAYTY 255

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           DDEVIKKA+AMGKPGL+EINAK+DSFIFTVE+TGA+ A +L+ NAI +L+QKLDAVRL +
Sbjct: 256 DDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 315

Query: 206 DTVEADDQFGELGAHMRGG 150
           D    D   GELGAH+ GG
Sbjct: 316 D----DADLGELGAHLVGG 330

[11][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
           bicolor RepID=C5X7D7_SORBI
          Length = 328

 Score =  178 bits (452), Expect = 2e-43
 Identities = 91/138 (65%), Positives = 114/138 (82%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEP+I INE+LME+L++EE++  I+SSPT+VF +D   Q V+V + EAY+Y
Sbjct: 195 SPAATVTFMYEPDIRINEELMETLTVEERRRLIESSPTKVFKLDSANQ-VVVDNAEAYTY 253

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           DDEVIK AEA+GKPGLVEINAK+DSFIFTVE+TGA+ A +L+ NAI +L+QKLDAVRL +
Sbjct: 254 DDEVIKHAEALGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 313

Query: 206 DTVEADDQFGELGAHMRG 153
           D    D   GELGAH+ G
Sbjct: 314 D----DGDLGELGAHLGG 327

[12][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
           mays RepID=B6TCC3_MAIZE
          Length = 328

 Score =  175 bits (443), Expect = 2e-42
 Identities = 89/138 (64%), Positives = 113/138 (81%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SPAATVTFMYEP+I INE+LME+L++EE+   I+SSPT+VF++D   Q V+V + EAY+Y
Sbjct: 195 SPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELDSANQ-VVVKNAEAYTY 253

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           DDEVIK AEA+GKPGLVEI AK+DSF+FTVE+TGA+ A +L+ NAI +L+QKLDAVRL +
Sbjct: 254 DDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 313

Query: 206 DTVEADDQFGELGAHMRG 153
           D    D   GELGAH+ G
Sbjct: 314 D----DGDLGELGAHLGG 327

[13][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MVZ5_9CHLO
          Length = 333

 Score =  126 bits (316), Expect = 1e-27
 Identities = 61/128 (47%), Positives = 94/128 (73%), Gaps = 3/128 (2%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPE---AY 393
           P AT T+ +EPEI INE+LM +L+ EEK  +++SSPT +F  D  T++V+V  P+   +Y
Sbjct: 199 PVATATYRFEPEITINEELMATLTEEEKMAFVESSPTALFRYDEATRRVVVDAPDQARSY 258

Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRL 213
            YD E +KKAE +GKPGLV+I AK+D+F FTVESTGA++  +++ NA+++L++K++  R 
Sbjct: 259 GYDGECLKKAEELGKPGLVDIRAKEDAFHFTVESTGALRPEEIVVNALKVLERKMEVTRG 318

Query: 212 SEDTVEAD 189
             D +E +
Sbjct: 319 ELDILERE 326

[14][TOP]
>UniRef100_B9GHC8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
           RepID=B9GHC8_POPTR
          Length = 87

 Score =  126 bits (316), Expect = 1e-27
 Identities = 62/85 (72%), Positives = 76/85 (89%)
 Frame = -3

Query: 419 VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEIL 240
           V+V+DPEAY+ DD+VIKKAEA GKPG+++I AK+D+F+F V STGA+KASQL+ +AIEIL
Sbjct: 1   VVVLDPEAYTNDDKVIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEIL 60

Query: 239 KQKLDAVRLSEDTVEADDQFGELGA 165
           KQKLDAVRLS+D VEADDQF EL A
Sbjct: 61  KQKLDAVRLSDDIVEADDQFDELSA 85

[15][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
           RCC299 RepID=C1EBY2_9CHLO
          Length = 331

 Score =  125 bits (314), Expect = 2e-27
 Identities = 62/125 (49%), Positives = 91/125 (72%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
           P AT  + +EPEI INEDLM +L+ EEK ++++SSPT VF  +  T++V V  PE+Y+YD
Sbjct: 200 PVATAVYRFEPEITINEDLMATLTEEEKIKFVESSPTPVFRYNDQTRKVEVNMPESYTYD 259

Query: 383 DEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSED 204
            E +K AE MGKPGLV+I AK+D+F+FTVESTGA+    ++ NA+++L  KL+  +   D
Sbjct: 260 GECLKWAEDMGKPGLVDIRAKEDTFLFTVESTGALPPETIVLNALKVLDTKLEMTKSELD 319

Query: 203 TVEAD 189
            V+++
Sbjct: 320 IVKSE 324

[16][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SM40_PHYPA
          Length = 385

 Score =  116 bits (290), Expect = 1e-24
 Identities = 64/135 (47%), Positives = 90/135 (66%), Gaps = 14/135 (10%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSP--------------TRVFDIDPV 429
           SP ATVTF +EPEI+INE+ ME+L+L EK+ W++SS                +VF +DP 
Sbjct: 197 SPVATVTFHHEPEIYINEEKMEALTLAEKQNWVESSLDLPQNQSFPVPATLVKVFKLDPA 256

Query: 428 TQQVMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAI 249
           T +VMVV P AY+   E+ +  EA G   LVEI  + DSFIF+VESTGA+  +++  +A+
Sbjct: 257 TSKVMVVSPGAYT-SQELQRNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPAKICVDAV 315

Query: 248 EILKQKLDAVRLSED 204
            ILK+KL A+R++ED
Sbjct: 316 NILKKKLLALRIAED 330

[17][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
           discoideum RepID=RPB3_DICDI
          Length = 302

 Score =  102 bits (254), Expect = 2e-20
 Identities = 51/119 (42%), Positives = 79/119 (66%), Gaps = 2/119 (1%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDP--VTQQVMVVDPEAY 393
           SP+   T+ ++P I +N++ ++ L+ ++K+EW+ S PT+V+   P   TQQV + DP   
Sbjct: 176 SPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRC 235

Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
            Y  E  KKAE+ GKP LV +  KQD FIFTVES+GA+K   ++  AI+I+K+KL  ++
Sbjct: 236 VYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294

[18][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
           Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
          Length = 301

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 45/127 (35%), Positives = 80/127 (62%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SP AT  F ++P +H+N++L+++LS  +K+  ++S P+++F  D     + +    + ++
Sbjct: 174 SPVATAVFKHDPVVHVNQELLKTLSGSDKRAIVESDPSQMFKYDADLDTISLTSTGSCTF 233

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
           D E++KK   MGK GL++I    DSF F VESTG + A +++  A+ IL+ KLD V    
Sbjct: 234 DGEIVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHILQTKLDTVGGEL 293

Query: 206 DTVEADD 186
           D +E+++
Sbjct: 294 DMIESEN 300

[19][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
           lucimarinus CCE9901 RepID=A4RSP9_OSTLU
          Length = 318

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 17/136 (12%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLE-----------------EKKEWIDSSPTRVFDI 438
           SP AT  F Y P I IN  L+ SL+ +                 EK   ++S P+++F  
Sbjct: 174 SPVATAVFKYTPLIDINHGLLNSLNGKSQTRILYHNFKRHNAGPEKAAIVESDPSKMFKY 233

Query: 437 DPVTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQ 258
           D  T    +  PE+ +YD EV+KK   +GKPGL+++    D F F VESTG +K  +++ 
Sbjct: 234 DADTDTFTLTSPESCTYDGEVMKKVNELGKPGLIDVRPGLDCFTFIVESTGVLKVEEVVL 293

Query: 257 NAIEILKQKLDAVRLS 210
            A+ IL+ KLD + +S
Sbjct: 294 QAVHILQSKLDTIGVS 309

[20][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
           Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
          Length = 275

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 36/101 (35%), Positives = 62/101 (61%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
           P AT  F Y+ +I ++   M  ++ +EK+ ++ S P++ F  +P+T+ + V + E+Y YD
Sbjct: 175 PVATAVFQYKAQITLSASAMADMTDDEKQAFVHSDPSKTFKFNPITRMIEVENEESYMYD 234

Query: 383 DEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLL 261
           +E + KA  +G+P LV I   QD FIF VE TG ++   ++
Sbjct: 235 EECVVKARELGRPDLVTIRQVQDHFIFRVEGTGVLEVKSIV 275

[21][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
           RepID=B7G229_PHATR
          Length = 320

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDP--EAYS 390
           P A  T+ + PEIHIN++ M +L+LE+K+E +D+ P R+ ++D VT  +  VD   +  +
Sbjct: 190 PVAVATYRFWPEIHINDEQMATLTLEQKQELVDTCPDRILELDEVTGDIRAVDNAWDICT 249

Query: 389 YDDEVIKKAEAMGK----PGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 225
           Y +++     AM K       V +   +D FIF VE+TGA+ A ++L +AI +L+ +L+
Sbjct: 250 YTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFIFNVETTGAMDADEILLSAIRVLRNRLN 308

[22][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
           RepID=CNJC_TETTH
          Length = 310

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           +P    TF  EPEI  ++++ ++L +E+KK  +++ PT+VF I+P T  + V D     Y
Sbjct: 178 NPVCISTFSVEPEIIFDQEI-QNLDIEQKKALVNACPTKVFGINPHTNTLEVQDHMKCMY 236

Query: 386 DDEVIKK-AEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
            +E + K AE   KP L++I+ K+D F F VE+TG +K  ++L+     L+QKLD +R
Sbjct: 237 CEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMR 294

[23][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
           Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
          Length = 363

 Score = 80.9 bits (198), Expect = 6e-14
 Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
           P ATV   Y  +I +N D    L  E +++W++  P +VF  D  T QV++ DP+A  + 
Sbjct: 194 PVATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDDRTGQVLLADPDACIFC 253

Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225
            E + K     K    LV +  K+D      F FTVESTGA+   Q+L +A+E+L++KL+
Sbjct: 254 RECLLKEPPFNKLAEPLVFVRHKKDKRGYHDFTFTVESTGALPVLQILYDAVEVLRRKLE 313

Query: 224 AVR 216
            VR
Sbjct: 314 RVR 316

[24][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
          Length = 308

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 47/128 (36%), Positives = 78/128 (60%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           +P    TF +E E++ +    +SLSL EK+   DS P  VF +D   Q ++V   E   +
Sbjct: 181 TPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMD-ANQDLIVNAIEKCVF 239

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
            +E I+ AE+M KP L+++  K++ +IFTVES G +KA+ ++Q A+ +L++K+D   +S+
Sbjct: 240 CEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVD--EISQ 297

Query: 206 DTVEADDQ 183
           D   A  Q
Sbjct: 298 DLSFAQQQ 305

[25][TOP]
>UniRef100_A0CLS1 Chromosome undetermined scaffold_204, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0CLS1_PARTE
          Length = 297

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 47/128 (36%), Positives = 78/128 (60%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           +P    TF +E E++ +    +SLSL EK+   DS P  VF +D   Q ++V   E   +
Sbjct: 170 TPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMD-ANQDLIVNAIEKCVF 228

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
            +E I+ AE+M KP L+++  K++ +IFTVES G +KA+ ++Q A+ +L++K+D   +S+
Sbjct: 229 CEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVD--EISQ 286

Query: 206 DTVEADDQ 183
           D   A  Q
Sbjct: 287 DLSFAQQQ 294

[26][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
           Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
          Length = 348

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 18/130 (13%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDID-----------PVTQQV 417
           P AT TF  E +I IN+  M ++SL+ ++E ++S P  VF +            PV +  
Sbjct: 178 PVATATFTNEADIRINQSSMTNVSLKHRREIVNSCPKNVFGLSASKSEFGMFDKPVEKST 237

Query: 416 MVVDPEAYSYDD-----EVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVKASQLLQ 258
            + D E  +  D     E +     +G   P L+ ++ K D F F VESTGA+ A Q+++
Sbjct: 238 NIPDIEVLNSSDCIFCNECVNTCRNLGYINPPLIRVDTKPDKFHFVVESTGAMPAEQIIE 297

Query: 257 NAIEILKQKL 228
            A+EIL++KL
Sbjct: 298 MALEILQEKL 307

[27][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
           marinus ATCC 50983 RepID=C5LCN7_9ALVE
          Length = 336

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDL-MESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYS 390
           +P  TV   YEP I I+  +  E LS+ E+K  + S P RV D+D    ++ VV  +   
Sbjct: 189 NPTGTVAIRYEPVITIDRAIEYEKLSVAERKAIVRSCPKRVLDLD-AADRIQVVRKDLCD 247

Query: 389 YDDEVIKKAEAMGKP-GLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRL 213
           + DE + KA    K  G++ +  + D   FTVESTGA     ++  AI++ K+K   +RL
Sbjct: 248 FCDECVTKANYDFKAKGMITVKQRTDVVHFTVESTGARPPEDIVMAAIKVFKEKW--IRL 305

Query: 212 SEDTVEADDQFGE 174
            ED  + + +FG+
Sbjct: 306 HEDLGKWEQEFGQ 318

[28][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
           subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
           CCMP1335 RepID=B8BWN8_THAPS
          Length = 297

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDP--EAYS 390
           P A  T+ + P I INE+    L+LE+K+E +++ P R+ ++D +T  ++ V+   E  +
Sbjct: 179 PVAVATYRFWPIITINEEACNMLTLEQKQELVEACPDRILELDEITGNLVAVENAYEMAT 238

Query: 389 YDDEVIKKAEAMGK----PGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 225
           + +++     AM K       V +    D F+F+VESTGA+ A ++L +++ +LK +L+
Sbjct: 239 FTEDLKTVQNAMKKRPEDDDFVNVVQSTDRFVFSVESTGAMDAEEILLSSLRVLKDRLN 297

[29][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
           RepID=A8MR04_ARATH
          Length = 235

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 34/50 (68%), Positives = 43/50 (86%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQV 417
           SPAATVT+MYEP+I INE++M +L+ EEK + I+SSPT+VF IDPVT QV
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230

[30][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
           dispar SAW760 RepID=B0EHR6_ENTDI
          Length = 283

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 34/112 (30%), Positives = 59/112 (52%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           +P     F    +I IN++ M SL+ E+K+ + +  P +VFD   V ++V +   E   +
Sbjct: 160 NPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVGEKVFIRGDENCIF 219

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231
            +E    A  +G+  LV +  K D F+F VE TG     Q+++  +E +K+K
Sbjct: 220 CNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271

[31][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
           RepID=A7AWB4_BABBO
          Length = 382

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
 Frame = -3

Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDID-------PVTQQVMVVDPE 399
           A V +  EP I IN  + E ++L EK + + S P +VF +          T+  +V+D  
Sbjct: 226 ANVAYKMEPVITINRQVAEKMNLNEKTQIVQSCPRKVFKLSNPHGAYSTATKAEIVIDNN 285

Query: 398 AYS-YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 222
               Y DE + +A  MG   L+ +   +  F FT+ES GA+   ++L+  ++ L++KL +
Sbjct: 286 LNCIYCDECLNQAREMGYRDLIRVQPDETKFHFTIESNGAISPEKILEICLDTLEEKLGS 345

Query: 221 V 219
           +
Sbjct: 346 L 346

[32][TOP]
>UniRef100_Q8IHT3 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium
           falciparum 3D7 RepID=Q8IHT3_PLAF7
          Length = 333

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 41/121 (33%), Positives = 66/121 (54%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SP  T  +   P    N +  E LS EEKK+ ++  P +VFDI+  +QQ+ V +P + S 
Sbjct: 216 SPVCTAVYKMYPHFSFNTN--EQLSYEEKKDLVNICPQKVFDIED-SQQIFVKNPLSCST 272

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
               I+K      P  +    +++ FIFT+ESTG   A+ + + A+ IL+QK+  V+ + 
Sbjct: 273 CRVCIEKY-----PKKISFQKEKNHFIFTIESTGCFSAADIFKKALFILRQKVINVKEAL 327

Query: 206 D 204
           D
Sbjct: 328 D 328

[33][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
           histolytica HM-1:IMSS RepID=C4M554_ENTHI
          Length = 283

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 33/112 (29%), Positives = 59/112 (52%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           +P     F    +I IN++ M SL+ E+K+ + +  P ++FD   V ++V +   E   +
Sbjct: 160 NPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKLFDYQEVGEKVFIRGEENCIF 219

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231
            +E    A  +G+  LV +  K D F+F VE TG     Q+++  +E +K+K
Sbjct: 220 CNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271

[34][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
           GT1 RepID=B9PNQ8_TOXGO
          Length = 484

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDI--DPVTQQVMVVDPEAY 393
           SP AT ++ +EPEI   EDL+     E K++   S P  VF    D  T    V+  E  
Sbjct: 329 SPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGVLRVENK 388

Query: 392 S---YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 228
               Y D+   KA+ +G   LV +   +  F FTVESTG + A Q+++ A +IL  K+
Sbjct: 389 MNCIYCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAFDILLNKV 446

[35][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
           RepID=Q4N9T5_THEPA
          Length = 354

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
 Frame = -3

Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ-------------- 420
           A V +  EP    N  LME LS EEK     S P  VF    V  +              
Sbjct: 187 ANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRNVFKYTGVRSEAPSFLGPSDKTFKL 246

Query: 419 ----VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNA 252
               + VVD  A  Y DE I     +G   L+ I   +  F FT+ESTGA+   ++L+ A
Sbjct: 247 DAAGLHVVDKLACIYCDECINYCRELGHKDLIRIQPDESKFHFTIESTGAIPPEKILEIA 306

Query: 251 IEILKQKL 228
           + +L++KL
Sbjct: 307 LVVLEKKL 314

[36][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
           Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
          Length = 337

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 19/144 (13%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDS--------------SPTRVFDIDPVT 426
           P +TV+  YEPE+ +N+D++ SL  E+ ++W+ S                T   D++ + 
Sbjct: 168 PVSTVSMRYEPEVILNKDVISSLDPEQLRQWMRSCVHRPHSIAESNGEGHTGHIDVNKLC 227

Query: 425 QQVMVVDPEAYSYDDEVI---KKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQN 255
           ++ ++ +P   S+ + ++    K +A G            +F FTVE+TG +   QL+++
Sbjct: 228 EECLLKEPSVVSFTEPLVFARPKKDARG----------HYNFTFTVETTGVLPVLQLIRD 277

Query: 254 AIEILKQKLDAVR--LSEDTVEAD 189
           A+++L++KL  V   L+E  V  D
Sbjct: 278 AVDVLRRKLQRVHECLTERVVPGD 301

[37][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
           Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
          Length = 351

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 40/121 (33%), Positives = 64/121 (52%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SP +T T+   PE    E  +     ++ KE+++  P  VFDI+ +T +V V +P   + 
Sbjct: 235 SPVSTATYRLLPEFKFPEGYITG---KDAKEFVEVCPMNVFDIEDITGKVYVKNPRNCTT 291

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
               I+K      P  VEI   +  FIF++ESTG++   QL++ AI IL++K   +  S 
Sbjct: 292 CRACIEKF-----PKKVEIFKNKHHFIFSIESTGSISPIQLVKTAINILREKSHKINNSI 346

Query: 206 D 204
           D
Sbjct: 347 D 347

[38][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
           RepID=B6KGB1_TOXGO
          Length = 484

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDI--DPVTQQVMVVDPEAY 393
           SP AT ++ +EPEI   EDL+     E K++   S P  VF    D  T    V+  E  
Sbjct: 329 SPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGVLRVENK 388

Query: 392 S---YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 228
               + D+   KA+ +G   LV +   +  F FTVESTG + A Q+++ A +IL  K+
Sbjct: 389 MNCIFCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAFDILLNKV 446

[39][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
           strain Friedlin RepID=Q4FY45_LEIMA
          Length = 337

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
           P ATV   Y PEI +N +  ++L   + +EW+   P  VF     T QV V D +A  + 
Sbjct: 169 PVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFC 228

Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225
            E   +     +    LV +  K++      F FTVESTG +   Q++ +A+ ++++KL 
Sbjct: 229 RECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPVLQIVYDAVAVVRKKLQ 288

Query: 224 AV 219
            V
Sbjct: 289 RV 290

[40][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
           infantum RepID=A4I451_LEIIN
          Length = 337

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
           P ATV   Y PEI +N +  ++L   + +EW+   P  VF     T QV V D +A  + 
Sbjct: 169 PVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFC 228

Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225
            E   +     +    LV +  K++      F FTVESTG +   Q++ +A+ ++++KL 
Sbjct: 229 RECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPVLQIVYDAVTVVRRKLQ 288

Query: 224 AV 219
            V
Sbjct: 289 RV 290

[41][TOP]
>UniRef100_A9T5P0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9T5P0_PHYPA
          Length = 360

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV--TQQVMVVDPEAY 393
           SP AT  +   PE+++ ED+   L+    +E +   PT VFDI+ V   ++ +V  P   
Sbjct: 245 SPVATARYRMLPEVNLMEDIQGKLA----EELVQKCPTGVFDIEDVGTVKKAIVARPRNC 300

Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231
           +   E ++  +   +   V++   +D FIFT+ESTGA++   L   AI+IL +K
Sbjct: 301 TLCRECVRGTDWDKR---VQLTRVKDHFIFTIESTGALRPEVLFTEAIKILNEK 351

[42][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
           RepID=Q5CNH1_CRYHO
          Length = 355

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------------ 420
           P +  TF  E ++ IN  L  +L+L+++KE ++  P  VF +   T +            
Sbjct: 179 PVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGNTSKTEYALNKNSTYS 238

Query: 419 ----------VMVVDPEAYSYDDEVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVK 276
                     + VV  ++  + +E +   +  G   P L+ ++ K D F F VESTGA+ 
Sbjct: 239 TKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPALIRVDTKPDKFHFLVESTGALP 298

Query: 275 ASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150
              +++ A EIL++KL+   LS     ++     L  +  GG
Sbjct: 299 VESIVELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338

[43][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
           RepID=Q5CSH3_CRYPV
          Length = 355

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
 Frame = -3

Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------------ 420
           P +  TF  E ++ IN  L  +L+L+++KE ++  P  VF +   T +            
Sbjct: 179 PVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSKTEYALNKNSAYS 238

Query: 419 ----------VMVVDPEAYSYDDEVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVK 276
                     + VV  ++  + +E +   +  G   P L+ ++ K D F F VESTGA+ 
Sbjct: 239 TKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDKFHFLVESTGALP 298

Query: 275 ASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150
              +++ A EIL++KL+   LS     ++     L  +  GG
Sbjct: 299 VESIVELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338

[44][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
           RepID=Q4UFZ3_THEAN
          Length = 354

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
 Frame = -3

Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ-------------- 420
           A V +  EP    N  LME LS +EK     S P  VF    V  +              
Sbjct: 187 ANVNYKMEPRFSFNSALMEQLSSDEKAGIAASCPRNVFKYTGVRSENPSFLGHSDKTFKL 246

Query: 419 ----VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNA 252
               + VV+     Y DE I     +G   L+ I   +  F FT+ESTG++   ++L+ A
Sbjct: 247 DAGGLQVVNKLDCIYCDECINYCRELGHKDLIRIQPDESKFHFTIESTGSIPPEKILEIA 306

Query: 251 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150
           + +L++KL  ++ +    ++        AH R G
Sbjct: 307 LIVLEKKLQDLQSNFTEAQSRTLGSTTTAHHREG 340

[45][TOP]
>UniRef100_C5M6J2 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
           Tax=Candida tropicalis MYA-3404 RepID=C5M6J2_CANTT
          Length = 337

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 38/117 (32%), Positives = 60/117 (51%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SP AT ++   P I I E +   L+ + +K +    P  V  ID  T +  V D    + 
Sbjct: 222 SPVATASYRLLPVIDIKEPITGKLAEKFQKCF----PPGVIGIDSKTGEAYVADARKDTV 277

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
             EV++  E  GK   V++  ++D FIF VESTGA+   ++   ++ ILK K + +R
Sbjct: 278 SREVLRHPEFDGK---VKLGRQRDHFIFNVESTGAMTPDEIFCKSVRILKNKAEYLR 331

[46][TOP]
>UniRef100_C5XXF5 Putative uncharacterized protein Sb04g006420 n=1 Tax=Sorghum
           bicolor RepID=C5XXF5_SORBI
          Length = 370

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT---QQVMVVDPEA 396
           SP AT  +   PE+ I +D+      ++ +E +   P  VFDI+ +    ++ +V  P A
Sbjct: 255 SPVATAWYRMLPEVVILKDIEG----DDAEELVKKCPVNVFDIEDLGNGGKRAVVAKPRA 310

Query: 395 YSYDDEVIKKAEAMGKPG-LVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219
            +   E +     MG  G  VE+   +D FIFT+ESTGA+    L   A++IL++K + V
Sbjct: 311 CTLCRECV-----MGPNGNQVELRRVRDHFIFTIESTGALPPEVLFTEAVKILEEKCERV 365

[47][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
           Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
          Length = 346

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 38/112 (33%), Positives = 55/112 (49%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SP  T  +  EPEI   E    S+  E+  +     P  VFDI+  T +     P   + 
Sbjct: 228 SPVCTAVYRLEPEIVFKE----SIQGEDASDLCSLCPMGVFDIEDTTGEAYARYPRNCTT 283

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231
               I++      P  +E+   +D FIF++ESTG+V A  L + AIEILK+K
Sbjct: 284 CRACIERF-----PKEIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEK 330

[48][TOP]
>UniRef100_C4XY85 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4XY85_CLAL4
          Length = 333

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 36/117 (30%), Positives = 61/117 (52%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SP AT ++   P I    D++E +S E+   +    P+ V  ID    +  V D    + 
Sbjct: 219 SPVATASYRLMPVI----DILEPISGEQAVRFQKCFPSGVIGIDE-KGEAYVADARKDTV 273

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
             EV++  E  GK   V++   ++ FIF VESTGA+  +++   ++ +LK K+D +R
Sbjct: 274 SREVLRHEEFSGK---VKLGRDREHFIFNVESTGAMSPAEIFLKSVRVLKNKVDYLR 327

[49][TOP]
>UniRef100_B9GFY9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GFY9_POPTR
          Length = 390

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVMVVDPEA 396
           SP  T  +   PE+     L+E++  E+ +E I   P+ VFDI+      ++ +V D  A
Sbjct: 273 SPVGTAWYRMFPEVV----LLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKAIVADSRA 328

Query: 395 YSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219
            +   E I+  E   K   V ++  +D FIFT+ESTGA+    L   A++IL+ K + V
Sbjct: 329 CTLCRECIRGDEEWEKR--VALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAKCERV 385

[50][TOP]
>UniRef100_B9S9W7 DNA-directed RNA polymerase I/III subunits, putative n=1
           Tax=Ricinus communis RepID=B9S9W7_RICCO
          Length = 374

 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVMVVDPEA 396
           SP AT  +   PE+ + ED+ + ++ E  K+     P  VFDI+ +    ++  V  P A
Sbjct: 258 SPVATAWYRMLPEVVLLEDIEDEIAEELTKK----CPVNVFDIEDIGNGKKRATVARPRA 313

Query: 395 YSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219
            +   E I+  E   +   V +   +D FIFT+ESTGA+    L   A+++L+ K + V
Sbjct: 314 CTLCRECIRGGEWDKR---VSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLEDKCERV 369

[51][TOP]
>UniRef100_Q54SN4 DNA-directed RNA polymerases I and III subunit rpac1 n=1
           Tax=Dictyostelium discoideum RepID=RPAC1_DICDI
          Length = 345

 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 36/119 (30%), Positives = 65/119 (54%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SP  T ++  +P I +++    S+  ++  + ++  P +VFDI+  + QV+   P   + 
Sbjct: 229 SPVCTASYRLQPVISVDK----SIKGDKANQLLEKCPKKVFDIED-SGQVVAARPLDCTM 283

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLS 210
             E I+  E       V+I   +D FIF++ESTGA+K+ ++ Q AI+I  +K + V  S
Sbjct: 284 CRECIRDPEFEQN---VKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIVEES 339

[52][TOP]
>UniRef100_Q6BV37 DEHA2C05654p n=1 Tax=Debaryomyces hansenii RepID=Q6BV37_DEBHA
          Length = 335

 Score = 53.9 bits (128), Expect = 8e-06
 Identities = 37/117 (31%), Positives = 59/117 (50%)
 Frame = -3

Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
           SP AT ++   P I I E +      E  K +    P+ V DI+    + +V D    + 
Sbjct: 221 SPVATASYRLMPVITITEPIKG----ESGKRFQKCFPSGVIDINK-NGEAVVKDSRKDTV 275

Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
             EV++  E  GK   V++  K+D FIF VESTGA+   ++   ++ +LK K + +R
Sbjct: 276 SREVLRHEEFNGK---VKLGRKRDHFIFNVESTGAMSPEEIFFKSVRVLKNKAEYLR 329