[UP]
[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 264 bits (675), Expect = 3e-69
Identities = 132/139 (94%), Positives = 137/139 (98%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEP+IHINEDLMESL+LEEKKEW+DSSPTRVFDIDPVTQQVMVVDPEAYSY
Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 239
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
DDEVIKKAEAMGKPGL+EI AKQDSFIFTVESTGAVKASQLL N+IEILKQKLDAVRLSE
Sbjct: 240 DDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSE 299
Query: 206 DTVEADDQFGELGAHMRGG 150
DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318
[2][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 248 bits (633), Expect = 2e-64
Identities = 122/139 (87%), Positives = 134/139 (96%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEP+IHINEDLMESLSLEEK+ W++SSPT+VFDIDP TQQV+VVDPEAY+Y
Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 239
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
D+EVIKKAE+MGKPGLV I AK+DSFIFTVESTGA+KASQL+ NAIEILKQKLDAVRLSE
Sbjct: 240 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 299
Query: 206 DTVEADDQFGELGAHMRGG 150
DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318
[3][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 240 bits (612), Expect = 6e-62
Identities = 118/139 (84%), Positives = 131/139 (94%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEPEIHINEDLMESL+LEEK W++SSPT+VFDID +QQV+V D EAY+Y
Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
DDEV+KKAEAMGKPGLVEI AK+DSFIFTVESTGA+KASQL+ NAI++LKQKLDAVRLSE
Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299
Query: 206 DTVEADDQFGELGAHMRGG 150
DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318
[4][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 240 bits (612), Expect = 6e-62
Identities = 118/139 (84%), Positives = 131/139 (94%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEPEIHINEDLMESL+LEEK W++SSPT+VFDID +QQV+V D EAY+Y
Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
DDEV+KKAEAMGKPGLVEI AK+DSFIFTVESTGA+KASQL+ NAI++LKQKLDAVRLSE
Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299
Query: 206 DTVEADDQFGELGAHMRGG 150
DTVEADDQFGELGAHMRGG
Sbjct: 300 DTVEADDQFGELGAHMRGG 318
[5][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 238 bits (608), Expect = 2e-61
Identities = 119/137 (86%), Positives = 130/137 (94%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEPEIHINEDLME+L+LEEK WI+SSPT+VFDID VTQQV+VVDPEAY+Y
Sbjct: 185 SPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAYTY 244
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
DDEVIKKAEAMGK GL++I AK+DSFIFTVESTGAVKASQL+ NAIEILKQKLDAVRLS+
Sbjct: 245 DDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSD 304
Query: 206 DTVEADDQFGELGAHMR 156
DTVEADDQFGELG HMR
Sbjct: 305 DTVEADDQFGELGVHMR 321
[6][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 236 bits (603), Expect = 7e-61
Identities = 116/139 (83%), Positives = 131/139 (94%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTF YEPEIHINE LME+L+LEEK+EWIDSSPT+VF++DPV+QQV+VVDPEAY+Y
Sbjct: 184 SPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPEAYTY 243
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
D+EV+KKAEAMGKPGLVEI +K+DSFIFTVESTGA+KASQ+ NAIEILK KLDAVRLS
Sbjct: 244 DEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSF 303
Query: 206 DTVEADDQFGELGAHMRGG 150
DT EADDQFGELGAHMRGG
Sbjct: 304 DTEEADDQFGELGAHMRGG 322
[7][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 227 bits (579), Expect = 4e-58
Identities = 113/139 (81%), Positives = 131/139 (94%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEP+I INED+M++LS EEK + I+SSPT+VF +DPVT+QV+VVDPEAY+Y
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
D+EVIKKAEAMGKPGL+EI+ K DSFIFTVESTGAVKASQL+ NAI++LKQKLDAVRLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300
Query: 206 DTVEADDQFGELGAHMRGG 150
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
[8][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 227 bits (579), Expect = 4e-58
Identities = 113/139 (81%), Positives = 131/139 (94%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEP+I INED+M++LS EEK + I+SSPT+VF +DPVT+QV+VVDPEAY+Y
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
D+EVIKKAEAMGKPGL+EI+ K DSFIFTVESTGAVKASQL+ NAI++LKQKLDAVRLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300
Query: 206 DTVEADDQFGELGAHMRGG 150
DTVEADDQFGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
[9][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 216 bits (551), Expect = 7e-55
Identities = 107/139 (76%), Positives = 128/139 (92%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVT+MYEP+I INE++M +L+ EEK + I+SSPT+VF IDPVT QV+VVDPEAY+Y
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
D+EVIKKAEAMGKPGL+EI+ K DSF+FTVESTGA+KASQL+ NAI+ILKQKLDA+RLS+
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300
Query: 206 DTVEADDQFGELGAHMRGG 150
+TVEADDQFGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319
[10][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 199 bits (506), Expect = 1e-49
Identities = 99/139 (71%), Positives = 120/139 (86%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEPEI INE+LME+L+LEEK+ ++SSPT+VF+IDP TQQV+V D EAY+Y
Sbjct: 196 SPAATVTFMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNIDPNTQQVVVEDAEAYTY 255
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
DDEVIKKA+AMGKPGL+EINAK+DSFIFTVE+TGA+ A +L+ NAI +L+QKLDAVRL +
Sbjct: 256 DDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 315
Query: 206 DTVEADDQFGELGAHMRGG 150
D D GELGAH+ GG
Sbjct: 316 D----DADLGELGAHLVGG 330
[11][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 178 bits (452), Expect = 2e-43
Identities = 91/138 (65%), Positives = 114/138 (82%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEP+I INE+LME+L++EE++ I+SSPT+VF +D Q V+V + EAY+Y
Sbjct: 195 SPAATVTFMYEPDIRINEELMETLTVEERRRLIESSPTKVFKLDSANQ-VVVDNAEAYTY 253
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
DDEVIK AEA+GKPGLVEINAK+DSFIFTVE+TGA+ A +L+ NAI +L+QKLDAVRL +
Sbjct: 254 DDEVIKHAEALGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 313
Query: 206 DTVEADDQFGELGAHMRG 153
D D GELGAH+ G
Sbjct: 314 D----DGDLGELGAHLGG 327
[12][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 175 bits (443), Expect = 2e-42
Identities = 89/138 (64%), Positives = 113/138 (81%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SPAATVTFMYEP+I INE+LME+L++EE+ I+SSPT+VF++D Q V+V + EAY+Y
Sbjct: 195 SPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELDSANQ-VVVKNAEAYTY 253
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
DDEVIK AEA+GKPGLVEI AK+DSF+FTVE+TGA+ A +L+ NAI +L+QKLDAVRL +
Sbjct: 254 DDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 313
Query: 206 DTVEADDQFGELGAHMRG 153
D D GELGAH+ G
Sbjct: 314 D----DGDLGELGAHLGG 327
[13][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 126 bits (316), Expect = 1e-27
Identities = 61/128 (47%), Positives = 94/128 (73%), Gaps = 3/128 (2%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPE---AY 393
P AT T+ +EPEI INE+LM +L+ EEK +++SSPT +F D T++V+V P+ +Y
Sbjct: 199 PVATATYRFEPEITINEELMATLTEEEKMAFVESSPTALFRYDEATRRVVVDAPDQARSY 258
Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRL 213
YD E +KKAE +GKPGLV+I AK+D+F FTVESTGA++ +++ NA+++L++K++ R
Sbjct: 259 GYDGECLKKAEELGKPGLVDIRAKEDAFHFTVESTGALRPEEIVVNALKVLERKMEVTRG 318
Query: 212 SEDTVEAD 189
D +E +
Sbjct: 319 ELDILERE 326
[14][TOP]
>UniRef100_B9GHC8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9GHC8_POPTR
Length = 87
Score = 126 bits (316), Expect = 1e-27
Identities = 62/85 (72%), Positives = 76/85 (89%)
Frame = -3
Query: 419 VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEIL 240
V+V+DPEAY+ DD+VIKKAEA GKPG+++I AK+D+F+F V STGA+KASQL+ +AIEIL
Sbjct: 1 VVVLDPEAYTNDDKVIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEIL 60
Query: 239 KQKLDAVRLSEDTVEADDQFGELGA 165
KQKLDAVRLS+D VEADDQF EL A
Sbjct: 61 KQKLDAVRLSDDIVEADDQFDELSA 85
[15][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 125 bits (314), Expect = 2e-27
Identities = 62/125 (49%), Positives = 91/125 (72%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
P AT + +EPEI INEDLM +L+ EEK ++++SSPT VF + T++V V PE+Y+YD
Sbjct: 200 PVATAVYRFEPEITINEDLMATLTEEEKIKFVESSPTPVFRYNDQTRKVEVNMPESYTYD 259
Query: 383 DEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSED 204
E +K AE MGKPGLV+I AK+D+F+FTVESTGA+ ++ NA+++L KL+ + D
Sbjct: 260 GECLKWAEDMGKPGLVDIRAKEDTFLFTVESTGALPPETIVLNALKVLDTKLEMTKSELD 319
Query: 203 TVEAD 189
V+++
Sbjct: 320 IVKSE 324
[16][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 116 bits (290), Expect = 1e-24
Identities = 64/135 (47%), Positives = 90/135 (66%), Gaps = 14/135 (10%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSP--------------TRVFDIDPV 429
SP ATVTF +EPEI+INE+ ME+L+L EK+ W++SS +VF +DP
Sbjct: 197 SPVATVTFHHEPEIYINEEKMEALTLAEKQNWVESSLDLPQNQSFPVPATLVKVFKLDPA 256
Query: 428 TQQVMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAI 249
T +VMVV P AY+ E+ + EA G LVEI + DSFIF+VESTGA+ +++ +A+
Sbjct: 257 TSKVMVVSPGAYT-SQELQRNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPAKICVDAV 315
Query: 248 EILKQKLDAVRLSED 204
ILK+KL A+R++ED
Sbjct: 316 NILKKKLLALRIAED 330
[17][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 102 bits (254), Expect = 2e-20
Identities = 51/119 (42%), Positives = 79/119 (66%), Gaps = 2/119 (1%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDP--VTQQVMVVDPEAY 393
SP+ T+ ++P I +N++ ++ L+ ++K+EW+ S PT+V+ P TQQV + DP
Sbjct: 176 SPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRC 235
Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
Y E KKAE+ GKP LV + KQD FIFTVES+GA+K ++ AI+I+K+KL ++
Sbjct: 236 VYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294
[18][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 98.6 bits (244), Expect = 3e-19
Identities = 45/127 (35%), Positives = 80/127 (62%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SP AT F ++P +H+N++L+++LS +K+ ++S P+++F D + + + ++
Sbjct: 174 SPVATAVFKHDPVVHVNQELLKTLSGSDKRAIVESDPSQMFKYDADLDTISLTSTGSCTF 233
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
D E++KK MGK GL++I DSF F VESTG + A +++ A+ IL+ KLD V
Sbjct: 234 DGEIVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHILQTKLDTVGGEL 293
Query: 206 DTVEADD 186
D +E+++
Sbjct: 294 DMIESEN 300
[19][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 91.3 bits (225), Expect = 5e-17
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 17/136 (12%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLE-----------------EKKEWIDSSPTRVFDI 438
SP AT F Y P I IN L+ SL+ + EK ++S P+++F
Sbjct: 174 SPVATAVFKYTPLIDINHGLLNSLNGKSQTRILYHNFKRHNAGPEKAAIVESDPSKMFKY 233
Query: 437 DPVTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQ 258
D T + PE+ +YD EV+KK +GKPGL+++ D F F VESTG +K +++
Sbjct: 234 DADTDTFTLTSPESCTYDGEVMKKVNELGKPGLIDVRPGLDCFTFIVESTGVLKVEEVVL 293
Query: 257 NAIEILKQKLDAVRLS 210
A+ IL+ KLD + +S
Sbjct: 294 QAVHILQSKLDTIGVS 309
[20][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 83.6 bits (205), Expect = 1e-14
Identities = 36/101 (35%), Positives = 62/101 (61%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
P AT F Y+ +I ++ M ++ +EK+ ++ S P++ F +P+T+ + V + E+Y YD
Sbjct: 175 PVATAVFQYKAQITLSASAMADMTDDEKQAFVHSDPSKTFKFNPITRMIEVENEESYMYD 234
Query: 383 DEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLL 261
+E + KA +G+P LV I QD FIF VE TG ++ ++
Sbjct: 235 EECVVKARELGRPDLVTIRQVQDHFIFRVEGTGVLEVKSIV 275
[21][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 83.2 bits (204), Expect = 1e-14
Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDP--EAYS 390
P A T+ + PEIHIN++ M +L+LE+K+E +D+ P R+ ++D VT + VD + +
Sbjct: 190 PVAVATYRFWPEIHINDEQMATLTLEQKQELVDTCPDRILELDEVTGDIRAVDNAWDICT 249
Query: 389 YDDEVIKKAEAMGK----PGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 225
Y +++ AM K V + +D FIF VE+TGA+ A ++L +AI +L+ +L+
Sbjct: 250 YTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFIFNVETTGAMDADEILLSAIRVLRNRLN 308
[22][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 82.8 bits (203), Expect = 2e-14
Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
+P TF EPEI ++++ ++L +E+KK +++ PT+VF I+P T + V D Y
Sbjct: 178 NPVCISTFSVEPEIIFDQEI-QNLDIEQKKALVNACPTKVFGINPHTNTLEVQDHMKCMY 236
Query: 386 DDEVIKK-AEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
+E + K AE KP L++I+ K+D F F VE+TG +K ++L+ L+QKLD +R
Sbjct: 237 CEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMR 294
[23][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 80.9 bits (198), Expect = 6e-14
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
P ATV Y +I +N D L E +++W++ P +VF D T QV++ DP+A +
Sbjct: 194 PVATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDDRTGQVLLADPDACIFC 253
Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225
E + K K LV + K+D F FTVESTGA+ Q+L +A+E+L++KL+
Sbjct: 254 RECLLKEPPFNKLAEPLVFVRHKKDKRGYHDFTFTVESTGALPVLQILYDAVEVLRRKLE 313
Query: 224 AVR 216
VR
Sbjct: 314 RVR 316
[24][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 80.5 bits (197), Expect = 8e-14
Identities = 47/128 (36%), Positives = 78/128 (60%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
+P TF +E E++ + +SLSL EK+ DS P VF +D Q ++V E +
Sbjct: 181 TPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMD-ANQDLIVNAIEKCVF 239
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
+E I+ AE+M KP L+++ K++ +IFTVES G +KA+ ++Q A+ +L++K+D +S+
Sbjct: 240 CEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVD--EISQ 297
Query: 206 DTVEADDQ 183
D A Q
Sbjct: 298 DLSFAQQQ 305
[25][TOP]
>UniRef100_A0CLS1 Chromosome undetermined scaffold_204, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0CLS1_PARTE
Length = 297
Score = 80.5 bits (197), Expect = 8e-14
Identities = 47/128 (36%), Positives = 78/128 (60%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
+P TF +E E++ + +SLSL EK+ DS P VF +D Q ++V E +
Sbjct: 170 TPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMD-ANQDLIVNAIEKCVF 228
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
+E I+ AE+M KP L+++ K++ +IFTVES G +KA+ ++Q A+ +L++K+D +S+
Sbjct: 229 CEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVD--EISQ 286
Query: 206 DTVEADDQ 183
D A Q
Sbjct: 287 DLSFAQQQ 294
[26][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 73.6 bits (179), Expect = 1e-11
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 18/130 (13%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDID-----------PVTQQV 417
P AT TF E +I IN+ M ++SL+ ++E ++S P VF + PV +
Sbjct: 178 PVATATFTNEADIRINQSSMTNVSLKHRREIVNSCPKNVFGLSASKSEFGMFDKPVEKST 237
Query: 416 MVVDPEAYSYDD-----EVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVKASQLLQ 258
+ D E + D E + +G P L+ ++ K D F F VESTGA+ A Q+++
Sbjct: 238 NIPDIEVLNSSDCIFCNECVNTCRNLGYINPPLIRVDTKPDKFHFVVESTGAMPAEQIIE 297
Query: 257 NAIEILKQKL 228
A+EIL++KL
Sbjct: 298 MALEILQEKL 307
[27][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 71.2 bits (173), Expect = 5e-11
Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDL-MESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYS 390
+P TV YEP I I+ + E LS+ E+K + S P RV D+D ++ VV +
Sbjct: 189 NPTGTVAIRYEPVITIDRAIEYEKLSVAERKAIVRSCPKRVLDLD-AADRIQVVRKDLCD 247
Query: 389 YDDEVIKKAEAMGKP-GLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRL 213
+ DE + KA K G++ + + D FTVESTGA ++ AI++ K+K +RL
Sbjct: 248 FCDECVTKANYDFKAKGMITVKQRTDVVHFTVESTGARPPEDIVMAAIKVFKEKW--IRL 305
Query: 212 SEDTVEADDQFGE 174
ED + + +FG+
Sbjct: 306 HEDLGKWEQEFGQ 318
[28][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 70.9 bits (172), Expect = 6e-11
Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDP--EAYS 390
P A T+ + P I INE+ L+LE+K+E +++ P R+ ++D +T ++ V+ E +
Sbjct: 179 PVAVATYRFWPIITINEEACNMLTLEQKQELVEACPDRILELDEITGNLVAVENAYEMAT 238
Query: 389 YDDEVIKKAEAMGK----PGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 225
+ +++ AM K V + D F+F+VESTGA+ A ++L +++ +LK +L+
Sbjct: 239 FTEDLKTVQNAMKKRPEDDDFVNVVQSTDRFVFSVESTGAMDAEEILLSSLRVLKDRLN 297
[29][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 70.5 bits (171), Expect = 8e-11
Identities = 34/50 (68%), Positives = 43/50 (86%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQV 417
SPAATVT+MYEP+I INE++M +L+ EEK + I+SSPT+VF IDPVT QV
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230
[30][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 65.1 bits (157), Expect = 4e-09
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
+P F +I IN++ M SL+ E+K+ + + P +VFD V ++V + E +
Sbjct: 160 NPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVGEKVFIRGDENCIF 219
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231
+E A +G+ LV + K D F+F VE TG Q+++ +E +K+K
Sbjct: 220 CNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271
[31][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 64.3 bits (155), Expect = 6e-09
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Frame = -3
Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDID-------PVTQQVMVVDPE 399
A V + EP I IN + E ++L EK + + S P +VF + T+ +V+D
Sbjct: 226 ANVAYKMEPVITINRQVAEKMNLNEKTQIVQSCPRKVFKLSNPHGAYSTATKAEIVIDNN 285
Query: 398 AYS-YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 222
Y DE + +A MG L+ + + F FT+ES GA+ ++L+ ++ L++KL +
Sbjct: 286 LNCIYCDECLNQAREMGYRDLIRVQPDETKFHFTIESNGAISPEKILEICLDTLEEKLGS 345
Query: 221 V 219
+
Sbjct: 346 L 346
[32][TOP]
>UniRef100_Q8IHT3 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8IHT3_PLAF7
Length = 333
Score = 63.9 bits (154), Expect = 8e-09
Identities = 41/121 (33%), Positives = 66/121 (54%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SP T + P N + E LS EEKK+ ++ P +VFDI+ +QQ+ V +P + S
Sbjct: 216 SPVCTAVYKMYPHFSFNTN--EQLSYEEKKDLVNICPQKVFDIED-SQQIFVKNPLSCST 272
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
I+K P + +++ FIFT+ESTG A+ + + A+ IL+QK+ V+ +
Sbjct: 273 CRVCIEKY-----PKKISFQKEKNHFIFTIESTGCFSAADIFKKALFILRQKVINVKEAL 327
Query: 206 D 204
D
Sbjct: 328 D 328
[33][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 63.9 bits (154), Expect = 8e-09
Identities = 33/112 (29%), Positives = 59/112 (52%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
+P F +I IN++ M SL+ E+K+ + + P ++FD V ++V + E +
Sbjct: 160 NPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKLFDYQEVGEKVFIRGEENCIF 219
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231
+E A +G+ LV + K D F+F VE TG Q+++ +E +K+K
Sbjct: 220 CNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271
[34][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 63.9 bits (154), Expect = 8e-09
Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDI--DPVTQQVMVVDPEAY 393
SP AT ++ +EPEI EDL+ E K++ S P VF D T V+ E
Sbjct: 329 SPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGVLRVENK 388
Query: 392 S---YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 228
Y D+ KA+ +G LV + + F FTVESTG + A Q+++ A +IL K+
Sbjct: 389 MNCIYCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAFDILLNKV 446
[35][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 63.2 bits (152), Expect = 1e-08
Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Frame = -3
Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ-------------- 420
A V + EP N LME LS EEK S P VF V +
Sbjct: 187 ANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRNVFKYTGVRSEAPSFLGPSDKTFKL 246
Query: 419 ----VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNA 252
+ VVD A Y DE I +G L+ I + F FT+ESTGA+ ++L+ A
Sbjct: 247 DAAGLHVVDKLACIYCDECINYCRELGHKDLIRIQPDESKFHFTIESTGAIPPEKILEIA 306
Query: 251 IEILKQKL 228
+ +L++KL
Sbjct: 307 LVVLEKKL 314
[36][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
Length = 337
Score = 62.8 bits (151), Expect = 2e-08
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 19/144 (13%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDS--------------SPTRVFDIDPVT 426
P +TV+ YEPE+ +N+D++ SL E+ ++W+ S T D++ +
Sbjct: 168 PVSTVSMRYEPEVILNKDVISSLDPEQLRQWMRSCVHRPHSIAESNGEGHTGHIDVNKLC 227
Query: 425 QQVMVVDPEAYSYDDEVI---KKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQN 255
++ ++ +P S+ + ++ K +A G +F FTVE+TG + QL+++
Sbjct: 228 EECLLKEPSVVSFTEPLVFARPKKDARG----------HYNFTFTVETTGVLPVLQLIRD 277
Query: 254 AIEILKQKLDAVR--LSEDTVEAD 189
A+++L++KL V L+E V D
Sbjct: 278 AVDVLRRKLQRVHECLTERVVPGD 301
[37][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 62.8 bits (151), Expect = 2e-08
Identities = 40/121 (33%), Positives = 64/121 (52%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SP +T T+ PE E + ++ KE+++ P VFDI+ +T +V V +P +
Sbjct: 235 SPVSTATYRLLPEFKFPEGYITG---KDAKEFVEVCPMNVFDIEDITGKVYVKNPRNCTT 291
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207
I+K P VEI + FIF++ESTG++ QL++ AI IL++K + S
Sbjct: 292 CRACIEKF-----PKKVEIFKNKHHFIFSIESTGSISPIQLVKTAINILREKSHKINNSI 346
Query: 206 D 204
D
Sbjct: 347 D 347
[38][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 62.4 bits (150), Expect = 2e-08
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDI--DPVTQQVMVVDPEAY 393
SP AT ++ +EPEI EDL+ E K++ S P VF D T V+ E
Sbjct: 329 SPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGVLRVENK 388
Query: 392 S---YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 228
+ D+ KA+ +G LV + + F FTVESTG + A Q+++ A +IL K+
Sbjct: 389 MNCIFCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAFDILLNKV 446
[39][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 59.3 bits (142), Expect = 2e-07
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
P ATV Y PEI +N + ++L + +EW+ P VF T QV V D +A +
Sbjct: 169 PVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFC 228
Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225
E + + LV + K++ F FTVESTG + Q++ +A+ ++++KL
Sbjct: 229 RECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPVLQIVYDAVAVVRKKLQ 288
Query: 224 AV 219
V
Sbjct: 289 RV 290
[40][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 59.3 bits (142), Expect = 2e-07
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384
P ATV Y PEI +N + ++L + +EW+ P VF T QV V D +A +
Sbjct: 169 PVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFC 228
Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225
E + + LV + K++ F FTVESTG + Q++ +A+ ++++KL
Sbjct: 229 RECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPVLQIVYDAVTVVRRKLQ 288
Query: 224 AV 219
V
Sbjct: 289 RV 290
[41][TOP]
>UniRef100_A9T5P0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9T5P0_PHYPA
Length = 360
Score = 58.5 bits (140), Expect = 3e-07
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV--TQQVMVVDPEAY 393
SP AT + PE+++ ED+ L+ +E + PT VFDI+ V ++ +V P
Sbjct: 245 SPVATARYRMLPEVNLMEDIQGKLA----EELVQKCPTGVFDIEDVGTVKKAIVARPRNC 300
Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231
+ E ++ + + V++ +D FIFT+ESTGA++ L AI+IL +K
Sbjct: 301 TLCRECVRGTDWDKR---VQLTRVKDHFIFTIESTGALRPEVLFTEAIKILNEK 351
[42][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 58.5 bits (140), Expect = 3e-07
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------------ 420
P + TF E ++ IN L +L+L+++KE ++ P VF + T +
Sbjct: 179 PVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGNTSKTEYALNKNSTYS 238
Query: 419 ----------VMVVDPEAYSYDDEVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVK 276
+ VV ++ + +E + + G P L+ ++ K D F F VESTGA+
Sbjct: 239 TKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPALIRVDTKPDKFHFLVESTGALP 298
Query: 275 ASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150
+++ A EIL++KL+ LS ++ L + GG
Sbjct: 299 VESIVELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338
[43][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 57.8 bits (138), Expect = 6e-07
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 24/162 (14%)
Frame = -3
Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------------ 420
P + TF E ++ IN L +L+L+++KE ++ P VF + T +
Sbjct: 179 PVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSKTEYALNKNSAYS 238
Query: 419 ----------VMVVDPEAYSYDDEVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVK 276
+ VV ++ + +E + + G P L+ ++ K D F F VESTGA+
Sbjct: 239 TKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDKFHFLVESTGALP 298
Query: 275 ASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150
+++ A EIL++KL+ LS ++ L + GG
Sbjct: 299 VESIVELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338
[44][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 57.8 bits (138), Expect = 6e-07
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
Frame = -3
Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ-------------- 420
A V + EP N LME LS +EK S P VF V +
Sbjct: 187 ANVNYKMEPRFSFNSALMEQLSSDEKAGIAASCPRNVFKYTGVRSENPSFLGHSDKTFKL 246
Query: 419 ----VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNA 252
+ VV+ Y DE I +G L+ I + F FT+ESTG++ ++L+ A
Sbjct: 247 DAGGLQVVNKLDCIYCDECINYCRELGHKDLIRIQPDESKFHFTIESTGSIPPEKILEIA 306
Query: 251 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150
+ +L++KL ++ + ++ AH R G
Sbjct: 307 LIVLEKKLQDLQSNFTEAQSRTLGSTTTAHHREG 340
[45][TOP]
>UniRef100_C5M6J2 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Candida tropicalis MYA-3404 RepID=C5M6J2_CANTT
Length = 337
Score = 56.6 bits (135), Expect = 1e-06
Identities = 38/117 (32%), Positives = 60/117 (51%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SP AT ++ P I I E + L+ + +K + P V ID T + V D +
Sbjct: 222 SPVATASYRLLPVIDIKEPITGKLAEKFQKCF----PPGVIGIDSKTGEAYVADARKDTV 277
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
EV++ E GK V++ ++D FIF VESTGA+ ++ ++ ILK K + +R
Sbjct: 278 SREVLRHPEFDGK---VKLGRQRDHFIFNVESTGAMTPDEIFCKSVRILKNKAEYLR 331
[46][TOP]
>UniRef100_C5XXF5 Putative uncharacterized protein Sb04g006420 n=1 Tax=Sorghum
bicolor RepID=C5XXF5_SORBI
Length = 370
Score = 55.1 bits (131), Expect = 4e-06
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT---QQVMVVDPEA 396
SP AT + PE+ I +D+ ++ +E + P VFDI+ + ++ +V P A
Sbjct: 255 SPVATAWYRMLPEVVILKDIEG----DDAEELVKKCPVNVFDIEDLGNGGKRAVVAKPRA 310
Query: 395 YSYDDEVIKKAEAMGKPG-LVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219
+ E + MG G VE+ +D FIFT+ESTGA+ L A++IL++K + V
Sbjct: 311 CTLCRECV-----MGPNGNQVELRRVRDHFIFTIESTGALPPEVLFTEAVKILEEKCERV 365
[47][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
Length = 346
Score = 55.1 bits (131), Expect = 4e-06
Identities = 38/112 (33%), Positives = 55/112 (49%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SP T + EPEI E S+ E+ + P VFDI+ T + P +
Sbjct: 228 SPVCTAVYRLEPEIVFKE----SIQGEDASDLCSLCPMGVFDIEDTTGEAYARYPRNCTT 283
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231
I++ P +E+ +D FIF++ESTG+V A L + AIEILK+K
Sbjct: 284 CRACIERF-----PKEIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEK 330
[48][TOP]
>UniRef100_C4XY85 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY85_CLAL4
Length = 333
Score = 55.1 bits (131), Expect = 4e-06
Identities = 36/117 (30%), Positives = 61/117 (52%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SP AT ++ P I D++E +S E+ + P+ V ID + V D +
Sbjct: 219 SPVATASYRLMPVI----DILEPISGEQAVRFQKCFPSGVIGIDE-KGEAYVADARKDTV 273
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
EV++ E GK V++ ++ FIF VESTGA+ +++ ++ +LK K+D +R
Sbjct: 274 SREVLRHEEFSGK---VKLGRDREHFIFNVESTGAMSPAEIFLKSVRVLKNKVDYLR 327
[49][TOP]
>UniRef100_B9GFY9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GFY9_POPTR
Length = 390
Score = 54.7 bits (130), Expect = 5e-06
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVMVVDPEA 396
SP T + PE+ L+E++ E+ +E I P+ VFDI+ ++ +V D A
Sbjct: 273 SPVGTAWYRMFPEVV----LLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKAIVADSRA 328
Query: 395 YSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219
+ E I+ E K V ++ +D FIFT+ESTGA+ L A++IL+ K + V
Sbjct: 329 CTLCRECIRGDEEWEKR--VALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAKCERV 385
[50][TOP]
>UniRef100_B9S9W7 DNA-directed RNA polymerase I/III subunits, putative n=1
Tax=Ricinus communis RepID=B9S9W7_RICCO
Length = 374
Score = 54.3 bits (129), Expect = 6e-06
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVMVVDPEA 396
SP AT + PE+ + ED+ + ++ E K+ P VFDI+ + ++ V P A
Sbjct: 258 SPVATAWYRMLPEVVLLEDIEDEIAEELTKK----CPVNVFDIEDIGNGKKRATVARPRA 313
Query: 395 YSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219
+ E I+ E + V + +D FIFT+ESTGA+ L A+++L+ K + V
Sbjct: 314 CTLCRECIRGGEWDKR---VSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLEDKCERV 369
[51][TOP]
>UniRef100_Q54SN4 DNA-directed RNA polymerases I and III subunit rpac1 n=1
Tax=Dictyostelium discoideum RepID=RPAC1_DICDI
Length = 345
Score = 54.3 bits (129), Expect = 6e-06
Identities = 36/119 (30%), Positives = 65/119 (54%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SP T ++ +P I +++ S+ ++ + ++ P +VFDI+ + QV+ P +
Sbjct: 229 SPVCTASYRLQPVISVDK----SIKGDKANQLLEKCPKKVFDIED-SGQVVAARPLDCTM 283
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLS 210
E I+ E V+I +D FIF++ESTGA+K+ ++ Q AI+I +K + V S
Sbjct: 284 CRECIRDPEFEQN---VKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIVEES 339
[52][TOP]
>UniRef100_Q6BV37 DEHA2C05654p n=1 Tax=Debaryomyces hansenii RepID=Q6BV37_DEBHA
Length = 335
Score = 53.9 bits (128), Expect = 8e-06
Identities = 37/117 (31%), Positives = 59/117 (50%)
Frame = -3
Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387
SP AT ++ P I I E + E K + P+ V DI+ + +V D +
Sbjct: 221 SPVATASYRLMPVITITEPIKG----ESGKRFQKCFPSGVIDINK-NGEAVVKDSRKDTV 275
Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216
EV++ E GK V++ K+D FIF VESTGA+ ++ ++ +LK K + +R
Sbjct: 276 SREVLRHEEFNGK---VKLGRKRDHFIFNVESTGAMSPEEIFFKSVRVLKNKAEYLR 329