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[1][TOP] >UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula RepID=Q2MGQ5_MEDTR Length = 318 Score = 264 bits (675), Expect = 3e-69 Identities = 132/139 (94%), Positives = 137/139 (98%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEP+IHINEDLMESL+LEEKKEW+DSSPTRVFDIDPVTQQVMVVDPEAYSY Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVDPEAYSY 239 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 DDEVIKKAEAMGKPGL+EI AKQDSFIFTVESTGAVKASQLL N+IEILKQKLDAVRLSE Sbjct: 240 DDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLDAVRLSE 299 Query: 206 DTVEADDQFGELGAHMRGG 150 DTVEADDQFGELGAHMRGG Sbjct: 300 DTVEADDQFGELGAHMRGG 318 [2][TOP] >UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus communis RepID=B9RYB6_RICCO Length = 318 Score = 248 bits (633), Expect = 2e-64 Identities = 122/139 (87%), Positives = 134/139 (96%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEP+IHINEDLMESLSLEEK+ W++SSPT+VFDIDP TQQV+VVDPEAY+Y Sbjct: 180 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 239 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 D+EVIKKAE+MGKPGLV I AK+DSFIFTVESTGA+KASQL+ NAIEILKQKLDAVRLSE Sbjct: 240 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 299 Query: 206 DTVEADDQFGELGAHMRGG 150 DTVEADDQFGELGAHMRGG Sbjct: 300 DTVEADDQFGELGAHMRGG 318 [3][TOP] >UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7P9N6_VITVI Length = 318 Score = 240 bits (612), Expect = 6e-62 Identities = 118/139 (84%), Positives = 131/139 (94%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEPEIHINEDLMESL+LEEK W++SSPT+VFDID +QQV+V D EAY+Y Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 DDEV+KKAEAMGKPGLVEI AK+DSFIFTVESTGA+KASQL+ NAI++LKQKLDAVRLSE Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299 Query: 206 DTVEADDQFGELGAHMRGG 150 DTVEADDQFGELGAHMRGG Sbjct: 300 DTVEADDQFGELGAHMRGG 318 [4][TOP] >UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B429_VITVI Length = 318 Score = 240 bits (612), Expect = 6e-62 Identities = 118/139 (84%), Positives = 131/139 (94%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEPEIHINEDLMESL+LEEK W++SSPT+VFDID +QQV+V D EAY+Y Sbjct: 180 SPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVADAEAYTY 239 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 DDEV+KKAEAMGKPGLVEI AK+DSFIFTVESTGA+KASQL+ NAI++LKQKLDAVRLSE Sbjct: 240 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLDAVRLSE 299 Query: 206 DTVEADDQFGELGAHMRGG 150 DTVEADDQFGELGAHMRGG Sbjct: 300 DTVEADDQFGELGAHMRGG 318 [5][TOP] >UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR Length = 346 Score = 238 bits (608), Expect = 2e-61 Identities = 119/137 (86%), Positives = 130/137 (94%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEPEIHINEDLME+L+LEEK WI+SSPT+VFDID VTQQV+VVDPEAY+Y Sbjct: 185 SPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVDPEAYTY 244 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 DDEVIKKAEAMGK GL++I AK+DSFIFTVESTGAVKASQL+ NAIEILKQKLDAVRLS+ Sbjct: 245 DDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLDAVRLSD 304 Query: 206 DTVEADDQFGELGAHMR 156 DTVEADDQFGELG HMR Sbjct: 305 DTVEADDQFGELGVHMR 321 [6][TOP] >UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SHD1_PHYPA Length = 324 Score = 236 bits (603), Expect = 7e-61 Identities = 116/139 (83%), Positives = 131/139 (94%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTF YEPEIHINE LME+L+LEEK+EWIDSSPT+VF++DPV+QQV+VVDPEAY+Y Sbjct: 184 SPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVDPEAYTY 243 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 D+EV+KKAEAMGKPGLVEI +K+DSFIFTVESTGA+KASQ+ NAIEILK KLDAVRLS Sbjct: 244 DEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLDAVRLSF 303 Query: 206 DTVEADDQFGELGAHMRGG 150 DT EADDQFGELGAHMRGG Sbjct: 304 DTEEADDQFGELGAHMRGG 322 [7][TOP] >UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1 Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH Length = 319 Score = 227 bits (579), Expect = 4e-58 Identities = 113/139 (81%), Positives = 131/139 (94%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEP+I INED+M++LS EEK + I+SSPT+VF +DPVT+QV+VVDPEAY+Y Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 D+EVIKKAEAMGKPGL+EI+ K DSFIFTVESTGAVKASQL+ NAI++LKQKLDAVRLS+ Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300 Query: 206 DTVEADDQFGELGAHMRGG 150 DTVEADDQFGELGAHMRGG Sbjct: 301 DTVEADDQFGELGAHMRGG 319 [8][TOP] >UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis thaliana RepID=RPB3A_ARATH Length = 319 Score = 227 bits (579), Expect = 4e-58 Identities = 113/139 (81%), Positives = 131/139 (94%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEP+I INED+M++LS EEK + I+SSPT+VF +DPVT+QV+VVDPEAY+Y Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 D+EVIKKAEAMGKPGL+EI+ K DSFIFTVESTGAVKASQL+ NAI++LKQKLDAVRLS+ Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300 Query: 206 DTVEADDQFGELGAHMRGG 150 DTVEADDQFGELGAHMRGG Sbjct: 301 DTVEADDQFGELGAHMRGG 319 [9][TOP] >UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis thaliana RepID=RPB3B_ARATH Length = 319 Score = 216 bits (551), Expect = 7e-55 Identities = 107/139 (76%), Positives = 128/139 (92%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVT+MYEP+I INE++M +L+ EEK + I+SSPT+VF IDPVT QV+VVDPEAY+Y Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 D+EVIKKAEAMGKPGL+EI+ K DSF+FTVESTGA+KASQL+ NAI+ILKQKLDA+RLS+ Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300 Query: 206 DTVEADDQFGELGAHMRGG 150 +TVEADDQFGELGAHMR G Sbjct: 301 NTVEADDQFGELGAHMREG 319 [10][TOP] >UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ Length = 330 Score = 199 bits (506), Expect = 1e-49 Identities = 99/139 (71%), Positives = 120/139 (86%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEPEI INE+LME+L+LEEK+ ++SSPT+VF+IDP TQQV+V D EAY+Y Sbjct: 196 SPAATVTFMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNIDPNTQQVVVEDAEAYTY 255 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 DDEVIKKA+AMGKPGL+EINAK+DSFIFTVE+TGA+ A +L+ NAI +L+QKLDAVRL + Sbjct: 256 DDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 315 Query: 206 DTVEADDQFGELGAHMRGG 150 D D GELGAH+ GG Sbjct: 316 D----DADLGELGAHLVGG 330 [11][TOP] >UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum bicolor RepID=C5X7D7_SORBI Length = 328 Score = 178 bits (452), Expect = 2e-43 Identities = 91/138 (65%), Positives = 114/138 (82%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEP+I INE+LME+L++EE++ I+SSPT+VF +D Q V+V + EAY+Y Sbjct: 195 SPAATVTFMYEPDIRINEELMETLTVEERRRLIESSPTKVFKLDSANQ-VVVDNAEAYTY 253 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 DDEVIK AEA+GKPGLVEINAK+DSFIFTVE+TGA+ A +L+ NAI +L+QKLDAVRL + Sbjct: 254 DDEVIKHAEALGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 313 Query: 206 DTVEADDQFGELGAHMRG 153 D D GELGAH+ G Sbjct: 314 D----DGDLGELGAHLGG 327 [12][TOP] >UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea mays RepID=B6TCC3_MAIZE Length = 328 Score = 175 bits (443), Expect = 2e-42 Identities = 89/138 (64%), Positives = 113/138 (81%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SPAATVTFMYEP+I INE+LME+L++EE+ I+SSPT+VF++D Q V+V + EAY+Y Sbjct: 195 SPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELDSANQ-VVVKNAEAYTY 253 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 DDEVIK AEA+GKPGLVEI AK+DSF+FTVE+TGA+ A +L+ NAI +L+QKLDAVRL + Sbjct: 254 DDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTGAITAYELIMNAITVLRQKLDAVRLQD 313 Query: 206 DTVEADDQFGELGAHMRG 153 D D GELGAH+ G Sbjct: 314 D----DGDLGELGAHLGG 327 [13][TOP] >UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MVZ5_9CHLO Length = 333 Score = 126 bits (316), Expect = 1e-27 Identities = 61/128 (47%), Positives = 94/128 (73%), Gaps = 3/128 (2%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPE---AY 393 P AT T+ +EPEI INE+LM +L+ EEK +++SSPT +F D T++V+V P+ +Y Sbjct: 199 PVATATYRFEPEITINEELMATLTEEEKMAFVESSPTALFRYDEATRRVVVDAPDQARSY 258 Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRL 213 YD E +KKAE +GKPGLV+I AK+D+F FTVESTGA++ +++ NA+++L++K++ R Sbjct: 259 GYDGECLKKAEELGKPGLVDIRAKEDAFHFTVESTGALRPEEIVVNALKVLERKMEVTRG 318 Query: 212 SEDTVEAD 189 D +E + Sbjct: 319 ELDILERE 326 [14][TOP] >UniRef100_B9GHC8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GHC8_POPTR Length = 87 Score = 126 bits (316), Expect = 1e-27 Identities = 62/85 (72%), Positives = 76/85 (89%) Frame = -3 Query: 419 VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEIL 240 V+V+DPEAY+ DD+VIKKAEA GKPG+++I AK+D+F+F V STGA+KASQL+ +AIEIL Sbjct: 1 VVVLDPEAYTNDDKVIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEIL 60 Query: 239 KQKLDAVRLSEDTVEADDQFGELGA 165 KQKLDAVRLS+D VEADDQF EL A Sbjct: 61 KQKLDAVRLSDDIVEADDQFDELSA 85 [15][TOP] >UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp. RCC299 RepID=C1EBY2_9CHLO Length = 331 Score = 125 bits (314), Expect = 2e-27 Identities = 62/125 (49%), Positives = 91/125 (72%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384 P AT + +EPEI INEDLM +L+ EEK ++++SSPT VF + T++V V PE+Y+YD Sbjct: 200 PVATAVYRFEPEITINEDLMATLTEEEKIKFVESSPTPVFRYNDQTRKVEVNMPESYTYD 259 Query: 383 DEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSED 204 E +K AE MGKPGLV+I AK+D+F+FTVESTGA+ ++ NA+++L KL+ + D Sbjct: 260 GECLKWAEDMGKPGLVDIRAKEDTFLFTVESTGALPPETIVLNALKVLDTKLEMTKSELD 319 Query: 203 TVEAD 189 V+++ Sbjct: 320 IVKSE 324 [16][TOP] >UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SM40_PHYPA Length = 385 Score = 116 bits (290), Expect = 1e-24 Identities = 64/135 (47%), Positives = 90/135 (66%), Gaps = 14/135 (10%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSP--------------TRVFDIDPV 429 SP ATVTF +EPEI+INE+ ME+L+L EK+ W++SS +VF +DP Sbjct: 197 SPVATVTFHHEPEIYINEEKMEALTLAEKQNWVESSLDLPQNQSFPVPATLVKVFKLDPA 256 Query: 428 TQQVMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAI 249 T +VMVV P AY+ E+ + EA G LVEI + DSFIF+VESTGA+ +++ +A+ Sbjct: 257 TSKVMVVSPGAYT-SQELQRNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPAKICVDAV 315 Query: 248 EILKQKLDAVRLSED 204 ILK+KL A+R++ED Sbjct: 316 NILKKKLLALRIAED 330 [17][TOP] >UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium discoideum RepID=RPB3_DICDI Length = 302 Score = 102 bits (254), Expect = 2e-20 Identities = 51/119 (42%), Positives = 79/119 (66%), Gaps = 2/119 (1%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDP--VTQQVMVVDPEAY 393 SP+ T+ ++P I +N++ ++ L+ ++K+EW+ S PT+V+ P TQQV + DP Sbjct: 176 SPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRC 235 Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216 Y E KKAE+ GKP LV + KQD FIFTVES+GA+K ++ AI+I+K+KL ++ Sbjct: 236 VYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294 [18][TOP] >UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1 Tax=Ostreococcus tauri RepID=Q01F02_OSTTA Length = 301 Score = 98.6 bits (244), Expect = 3e-19 Identities = 45/127 (35%), Positives = 80/127 (62%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SP AT F ++P +H+N++L+++LS +K+ ++S P+++F D + + + ++ Sbjct: 174 SPVATAVFKHDPVVHVNQELLKTLSGSDKRAIVESDPSQMFKYDADLDTISLTSTGSCTF 233 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 D E++KK MGK GL++I DSF F VESTG + A +++ A+ IL+ KLD V Sbjct: 234 DGEIVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHILQTKLDTVGGEL 293 Query: 206 DTVEADD 186 D +E+++ Sbjct: 294 DMIESEN 300 [19][TOP] >UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RSP9_OSTLU Length = 318 Score = 91.3 bits (225), Expect = 5e-17 Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 17/136 (12%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLE-----------------EKKEWIDSSPTRVFDI 438 SP AT F Y P I IN L+ SL+ + EK ++S P+++F Sbjct: 174 SPVATAVFKYTPLIDINHGLLNSLNGKSQTRILYHNFKRHNAGPEKAAIVESDPSKMFKY 233 Query: 437 DPVTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQ 258 D T + PE+ +YD EV+KK +GKPGL+++ D F F VESTG +K +++ Sbjct: 234 DADTDTFTLTSPESCTYDGEVMKKVNELGKPGLIDVRPGLDCFTFIVESTGVLKVEEVVL 293 Query: 257 NAIEILKQKLDAVRLS 210 A+ IL+ KLD + +S Sbjct: 294 QAVHILQSKLDTIGVS 309 [20][TOP] >UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE Length = 275 Score = 83.6 bits (205), Expect = 1e-14 Identities = 36/101 (35%), Positives = 62/101 (61%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384 P AT F Y+ +I ++ M ++ +EK+ ++ S P++ F +P+T+ + V + E+Y YD Sbjct: 175 PVATAVFQYKAQITLSASAMADMTDDEKQAFVHSDPSKTFKFNPITRMIEVENEESYMYD 234 Query: 383 DEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLL 261 +E + KA +G+P LV I QD FIF VE TG ++ ++ Sbjct: 235 EECVVKARELGRPDLVTIRQVQDHFIFRVEGTGVLEVKSIV 275 [21][TOP] >UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G229_PHATR Length = 320 Score = 83.2 bits (204), Expect = 1e-14 Identities = 43/119 (36%), Positives = 73/119 (61%), Gaps = 6/119 (5%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDP--EAYS 390 P A T+ + PEIHIN++ M +L+LE+K+E +D+ P R+ ++D VT + VD + + Sbjct: 190 PVAVATYRFWPEIHINDEQMATLTLEQKQELVDTCPDRILELDEVTGDIRAVDNAWDICT 249 Query: 389 YDDEVIKKAEAMGK----PGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 225 Y +++ AM K V + +D FIF VE+TGA+ A ++L +AI +L+ +L+ Sbjct: 250 YTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFIFNVETTGAMDADEILLSAIRVLRNRLN 308 [22][TOP] >UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila RepID=CNJC_TETTH Length = 310 Score = 82.8 bits (203), Expect = 2e-14 Identities = 45/118 (38%), Positives = 73/118 (61%), Gaps = 1/118 (0%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 +P TF EPEI ++++ ++L +E+KK +++ PT+VF I+P T + V D Y Sbjct: 178 NPVCISTFSVEPEIIFDQEI-QNLDIEQKKALVNACPTKVFGINPHTNTLEVQDHMKCMY 236 Query: 386 DDEVIKK-AEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216 +E + K AE KP L++I+ K+D F F VE+TG +K ++L+ L+QKLD +R Sbjct: 237 CEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMR 294 [23][TOP] >UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1 Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR Length = 363 Score = 80.9 bits (198), Expect = 6e-14 Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 7/123 (5%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384 P ATV Y +I +N D L E +++W++ P +VF D T QV++ DP+A + Sbjct: 194 PVATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDDRTGQVLLADPDACIFC 253 Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225 E + K K LV + K+D F FTVESTGA+ Q+L +A+E+L++KL+ Sbjct: 254 RECLLKEPPFNKLAEPLVFVRHKKDKRGYHDFTFTVESTGALPVLQILYDAVEVLRRKLE 313 Query: 224 AVR 216 VR Sbjct: 314 RVR 316 [24][TOP] >UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE Length = 308 Score = 80.5 bits (197), Expect = 8e-14 Identities = 47/128 (36%), Positives = 78/128 (60%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 +P TF +E E++ + +SLSL EK+ DS P VF +D Q ++V E + Sbjct: 181 TPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMD-ANQDLIVNAIEKCVF 239 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 +E I+ AE+M KP L+++ K++ +IFTVES G +KA+ ++Q A+ +L++K+D +S+ Sbjct: 240 CEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVD--EISQ 297 Query: 206 DTVEADDQ 183 D A Q Sbjct: 298 DLSFAQQQ 305 [25][TOP] >UniRef100_A0CLS1 Chromosome undetermined scaffold_204, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0CLS1_PARTE Length = 297 Score = 80.5 bits (197), Expect = 8e-14 Identities = 47/128 (36%), Positives = 78/128 (60%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 +P TF +E E++ + +SLSL EK+ DS P VF +D Q ++V E + Sbjct: 170 TPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMD-ANQDLIVNAIEKCVF 228 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 +E I+ AE+M KP L+++ K++ +IFTVES G +KA+ ++Q A+ +L++K+D +S+ Sbjct: 229 CEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVD--EISQ 286 Query: 206 DTVEADDQ 183 D A Q Sbjct: 287 DLSFAQQQ 294 [26][TOP] >UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT Length = 348 Score = 73.6 bits (179), Expect = 1e-11 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 18/130 (13%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDID-----------PVTQQV 417 P AT TF E +I IN+ M ++SL+ ++E ++S P VF + PV + Sbjct: 178 PVATATFTNEADIRINQSSMTNVSLKHRREIVNSCPKNVFGLSASKSEFGMFDKPVEKST 237 Query: 416 MVVDPEAYSYDD-----EVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVKASQLLQ 258 + D E + D E + +G P L+ ++ K D F F VESTGA+ A Q+++ Sbjct: 238 NIPDIEVLNSSDCIFCNECVNTCRNLGYINPPLIRVDTKPDKFHFVVESTGAMPAEQIIE 297 Query: 257 NAIEILKQKL 228 A+EIL++KL Sbjct: 298 MALEILQEKL 307 [27][TOP] >UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LCN7_9ALVE Length = 336 Score = 71.2 bits (173), Expect = 5e-11 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDL-MESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYS 390 +P TV YEP I I+ + E LS+ E+K + S P RV D+D ++ VV + Sbjct: 189 NPTGTVAIRYEPVITIDRAIEYEKLSVAERKAIVRSCPKRVLDLD-AADRIQVVRKDLCD 247 Query: 389 YDDEVIKKAEAMGKP-GLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRL 213 + DE + KA K G++ + + D FTVESTGA ++ AI++ K+K +RL Sbjct: 248 FCDECVTKANYDFKAKGMITVKQRTDVVHFTVESTGARPPEDIVMAAIKVFKEKW--IRL 305 Query: 212 SEDTVEADDQFGE 174 ED + + +FG+ Sbjct: 306 HEDLGKWEQEFGQ 318 [28][TOP] >UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest subunit (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BWN8_THAPS Length = 297 Score = 70.9 bits (172), Expect = 6e-11 Identities = 37/119 (31%), Positives = 70/119 (58%), Gaps = 6/119 (5%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDP--EAYS 390 P A T+ + P I INE+ L+LE+K+E +++ P R+ ++D +T ++ V+ E + Sbjct: 179 PVAVATYRFWPIITINEEACNMLTLEQKQELVEACPDRILELDEITGNLVAVENAYEMAT 238 Query: 389 YDDEVIKKAEAMGK----PGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 225 + +++ AM K V + D F+F+VESTGA+ A ++L +++ +LK +L+ Sbjct: 239 FTEDLKTVQNAMKKRPEDDDFVNVVQSTDRFVFSVESTGAMDAEEILLSSLRVLKDRLN 297 [29][TOP] >UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana RepID=A8MR04_ARATH Length = 235 Score = 70.5 bits (171), Expect = 8e-11 Identities = 34/50 (68%), Positives = 43/50 (86%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQV 417 SPAATVT+MYEP+I INE++M +L+ EEK + I+SSPT+VF IDPVT QV Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230 [30][TOP] >UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba dispar SAW760 RepID=B0EHR6_ENTDI Length = 283 Score = 65.1 bits (157), Expect = 4e-09 Identities = 34/112 (30%), Positives = 59/112 (52%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 +P F +I IN++ M SL+ E+K+ + + P +VFD V ++V + E + Sbjct: 160 NPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVGEKVFIRGDENCIF 219 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231 +E A +G+ LV + K D F+F VE TG Q+++ +E +K+K Sbjct: 220 CNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271 [31][TOP] >UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis RepID=A7AWB4_BABBO Length = 382 Score = 64.3 bits (155), Expect = 6e-09 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 8/121 (6%) Frame = -3 Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDID-------PVTQQVMVVDPE 399 A V + EP I IN + E ++L EK + + S P +VF + T+ +V+D Sbjct: 226 ANVAYKMEPVITINRQVAEKMNLNEKTQIVQSCPRKVFKLSNPHGAYSTATKAEIVIDNN 285 Query: 398 AYS-YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 222 Y DE + +A MG L+ + + F FT+ES GA+ ++L+ ++ L++KL + Sbjct: 286 LNCIYCDECLNQAREMGYRDLIRVQPDETKFHFTIESNGAISPEKILEICLDTLEEKLGS 345 Query: 221 V 219 + Sbjct: 346 L 346 [32][TOP] >UniRef100_Q8IHT3 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8IHT3_PLAF7 Length = 333 Score = 63.9 bits (154), Expect = 8e-09 Identities = 41/121 (33%), Positives = 66/121 (54%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SP T + P N + E LS EEKK+ ++ P +VFDI+ +QQ+ V +P + S Sbjct: 216 SPVCTAVYKMYPHFSFNTN--EQLSYEEKKDLVNICPQKVFDIED-SQQIFVKNPLSCST 272 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 I+K P + +++ FIFT+ESTG A+ + + A+ IL+QK+ V+ + Sbjct: 273 CRVCIEKY-----PKKISFQKEKNHFIFTIESTGCFSAADIFKKALFILRQKVINVKEAL 327 Query: 206 D 204 D Sbjct: 328 D 328 [33][TOP] >UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4M554_ENTHI Length = 283 Score = 63.9 bits (154), Expect = 8e-09 Identities = 33/112 (29%), Positives = 59/112 (52%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 +P F +I IN++ M SL+ E+K+ + + P ++FD V ++V + E + Sbjct: 160 NPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKLFDYQEVGEKVFIRGEENCIF 219 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231 +E A +G+ LV + K D F+F VE TG Q+++ +E +K+K Sbjct: 220 CNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271 [34][TOP] >UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii GT1 RepID=B9PNQ8_TOXGO Length = 484 Score = 63.9 bits (154), Expect = 8e-09 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDI--DPVTQQVMVVDPEAY 393 SP AT ++ +EPEI EDL+ E K++ S P VF D T V+ E Sbjct: 329 SPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGVLRVENK 388 Query: 392 S---YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 228 Y D+ KA+ +G LV + + F FTVESTG + A Q+++ A +IL K+ Sbjct: 389 MNCIYCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAFDILLNKV 446 [35][TOP] >UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva RepID=Q4N9T5_THEPA Length = 354 Score = 63.2 bits (152), Expect = 1e-08 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 18/128 (14%) Frame = -3 Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ-------------- 420 A V + EP N LME LS EEK S P VF V + Sbjct: 187 ANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRNVFKYTGVRSEAPSFLGPSDKTFKL 246 Query: 419 ----VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNA 252 + VVD A Y DE I +G L+ I + F FT+ESTGA+ ++L+ A Sbjct: 247 DAAGLHVVDKLACIYCDECINYCRELGHKDLIRIQPDESKFHFTIESTGAIPPEKILEIA 306 Query: 251 IEILKQKL 228 + +L++KL Sbjct: 307 LVVLEKKL 314 [36][TOP] >UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2 Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG Length = 337 Score = 62.8 bits (151), Expect = 2e-08 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 19/144 (13%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDS--------------SPTRVFDIDPVT 426 P +TV+ YEPE+ +N+D++ SL E+ ++W+ S T D++ + Sbjct: 168 PVSTVSMRYEPEVILNKDVISSLDPEQLRQWMRSCVHRPHSIAESNGEGHTGHIDVNKLC 227 Query: 425 QQVMVVDPEAYSYDDEVI---KKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQN 255 ++ ++ +P S+ + ++ K +A G +F FTVE+TG + QL+++ Sbjct: 228 EECLLKEPSVVSFTEPLVFARPKKDARG----------HYNFTFTVETTGVLPVLQLIRD 277 Query: 254 AIEILKQKLDAVR--LSEDTVEAD 189 A+++L++KL V L+E V D Sbjct: 278 AVDVLRRKLQRVHECLTERVVPGD 301 [37][TOP] >UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT Length = 351 Score = 62.8 bits (151), Expect = 2e-08 Identities = 40/121 (33%), Positives = 64/121 (52%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SP +T T+ PE E + ++ KE+++ P VFDI+ +T +V V +P + Sbjct: 235 SPVSTATYRLLPEFKFPEGYITG---KDAKEFVEVCPMNVFDIEDITGKVYVKNPRNCTT 291 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLSE 207 I+K P VEI + FIF++ESTG++ QL++ AI IL++K + S Sbjct: 292 CRACIEKF-----PKKVEIFKNKHHFIFSIESTGSISPIQLVKTAINILREKSHKINNSI 346 Query: 206 D 204 D Sbjct: 347 D 347 [38][TOP] >UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii RepID=B6KGB1_TOXGO Length = 484 Score = 62.4 bits (150), Expect = 2e-08 Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDI--DPVTQQVMVVDPEAY 393 SP AT ++ +EPEI EDL+ E K++ S P VF D T V+ E Sbjct: 329 SPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGVLRVENK 388 Query: 392 S---YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 228 + D+ KA+ +G LV + + F FTVESTG + A Q+++ A +IL K+ Sbjct: 389 MNCIFCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAFDILLNKV 446 [39][TOP] >UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major strain Friedlin RepID=Q4FY45_LEIMA Length = 337 Score = 59.3 bits (142), Expect = 2e-07 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 7/122 (5%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384 P ATV Y PEI +N + ++L + +EW+ P VF T QV V D +A + Sbjct: 169 PVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFC 228 Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225 E + + LV + K++ F FTVESTG + Q++ +A+ ++++KL Sbjct: 229 RECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPVLQIVYDAVAVVRKKLQ 288 Query: 224 AV 219 V Sbjct: 289 RV 290 [40][TOP] >UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania infantum RepID=A4I451_LEIIN Length = 337 Score = 59.3 bits (142), Expect = 2e-07 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 7/122 (5%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSYD 384 P ATV Y PEI +N + ++L + +EW+ P VF T QV V D +A + Sbjct: 169 PVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVERTGQVEVQDEDACIFC 228 Query: 383 DEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIEILKQKLD 225 E + + LV + K++ F FTVESTG + Q++ +A+ ++++KL Sbjct: 229 RECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPVLQIVYDAVTVVRRKLQ 288 Query: 224 AV 219 V Sbjct: 289 RV 290 [41][TOP] >UniRef100_A9T5P0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T5P0_PHYPA Length = 360 Score = 58.5 bits (140), Expect = 3e-07 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 2/114 (1%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV--TQQVMVVDPEAY 393 SP AT + PE+++ ED+ L+ +E + PT VFDI+ V ++ +V P Sbjct: 245 SPVATARYRMLPEVNLMEDIQGKLA----EELVQKCPTGVFDIEDVGTVKKAIVARPRNC 300 Query: 392 SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231 + E ++ + + V++ +D FIFT+ESTGA++ L AI+IL +K Sbjct: 301 TLCRECVRGTDWDKR---VQLTRVKDHFIFTIESTGALRPEVLFTEAIKILNEK 351 [42][TOP] >UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis RepID=Q5CNH1_CRYHO Length = 355 Score = 58.5 bits (140), Expect = 3e-07 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 24/162 (14%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------------ 420 P + TF E ++ IN L +L+L+++KE ++ P VF + T + Sbjct: 179 PVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGNTSKTEYALNKNSTYS 238 Query: 419 ----------VMVVDPEAYSYDDEVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVK 276 + VV ++ + +E + + G P L+ ++ K D F F VESTGA+ Sbjct: 239 TKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPALIRVDTKPDKFHFLVESTGALP 298 Query: 275 ASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150 +++ A EIL++KL+ LS ++ L + GG Sbjct: 299 VESIVELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338 [43][TOP] >UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II RepID=Q5CSH3_CRYPV Length = 355 Score = 57.8 bits (138), Expect = 6e-07 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 24/162 (14%) Frame = -3 Query: 563 PAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------------ 420 P + TF E ++ IN L +L+L+++KE ++ P VF + T + Sbjct: 179 PVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSKTEYALNKNSAYS 238 Query: 419 ----------VMVVDPEAYSYDDEVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAVK 276 + VV ++ + +E + + G P L+ ++ K D F F VESTGA+ Sbjct: 239 TKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDKFHFLVESTGALP 298 Query: 275 ASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150 +++ A EIL++KL+ LS ++ L + GG Sbjct: 299 VESIVELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338 [44][TOP] >UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata RepID=Q4UFZ3_THEAN Length = 354 Score = 57.8 bits (138), Expect = 6e-07 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 18/154 (11%) Frame = -3 Query: 557 ATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ-------------- 420 A V + EP N LME LS +EK S P VF V + Sbjct: 187 ANVNYKMEPRFSFNSALMEQLSSDEKAGIAASCPRNVFKYTGVRSENPSFLGHSDKTFKL 246 Query: 419 ----VMVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNA 252 + VV+ Y DE I +G L+ I + F FT+ESTG++ ++L+ A Sbjct: 247 DAGGLQVVNKLDCIYCDECINYCRELGHKDLIRIQPDESKFHFTIESTGSIPPEKILEIA 306 Query: 251 IEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 150 + +L++KL ++ + ++ AH R G Sbjct: 307 LIVLEKKLQDLQSNFTEAQSRTLGSTTTAHHREG 340 [45][TOP] >UniRef100_C5M6J2 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M6J2_CANTT Length = 337 Score = 56.6 bits (135), Expect = 1e-06 Identities = 38/117 (32%), Positives = 60/117 (51%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SP AT ++ P I I E + L+ + +K + P V ID T + V D + Sbjct: 222 SPVATASYRLLPVIDIKEPITGKLAEKFQKCF----PPGVIGIDSKTGEAYVADARKDTV 277 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216 EV++ E GK V++ ++D FIF VESTGA+ ++ ++ ILK K + +R Sbjct: 278 SREVLRHPEFDGK---VKLGRQRDHFIFNVESTGAMTPDEIFCKSVRILKNKAEYLR 331 [46][TOP] >UniRef100_C5XXF5 Putative uncharacterized protein Sb04g006420 n=1 Tax=Sorghum bicolor RepID=C5XXF5_SORBI Length = 370 Score = 55.1 bits (131), Expect = 4e-06 Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 4/120 (3%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT---QQVMVVDPEA 396 SP AT + PE+ I +D+ ++ +E + P VFDI+ + ++ +V P A Sbjct: 255 SPVATAWYRMLPEVVILKDIEG----DDAEELVKKCPVNVFDIEDLGNGGKRAVVAKPRA 310 Query: 395 YSYDDEVIKKAEAMGKPG-LVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219 + E + MG G VE+ +D FIFT+ESTGA+ L A++IL++K + V Sbjct: 311 CTLCRECV-----MGPNGNQVELRRVRDHFIFTIESTGALPPEVLFTEAVKILEEKCERV 365 [47][TOP] >UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2 Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO Length = 346 Score = 55.1 bits (131), Expect = 4e-06 Identities = 38/112 (33%), Positives = 55/112 (49%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SP T + EPEI E S+ E+ + P VFDI+ T + P + Sbjct: 228 SPVCTAVYRLEPEIVFKE----SIQGEDASDLCSLCPMGVFDIEDTTGEAYARYPRNCTT 283 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 231 I++ P +E+ +D FIF++ESTG+V A L + AIEILK+K Sbjct: 284 CRACIERF-----PKEIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEK 330 [48][TOP] >UniRef100_C4XY85 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4XY85_CLAL4 Length = 333 Score = 55.1 bits (131), Expect = 4e-06 Identities = 36/117 (30%), Positives = 61/117 (52%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SP AT ++ P I D++E +S E+ + P+ V ID + V D + Sbjct: 219 SPVATASYRLMPVI----DILEPISGEQAVRFQKCFPSGVIGIDE-KGEAYVADARKDTV 273 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216 EV++ E GK V++ ++ FIF VESTGA+ +++ ++ +LK K+D +R Sbjct: 274 SREVLRHEEFSGK---VKLGRDREHFIFNVESTGAMSPAEIFLKSVRVLKNKVDYLR 327 [49][TOP] >UniRef100_B9GFY9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GFY9_POPTR Length = 390 Score = 54.7 bits (130), Expect = 5e-06 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVMVVDPEA 396 SP T + PE+ L+E++ E+ +E I P+ VFDI+ ++ +V D A Sbjct: 273 SPVGTAWYRMFPEVV----LLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKAIVADSRA 328 Query: 395 YSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219 + E I+ E K V ++ +D FIFT+ESTGA+ L A++IL+ K + V Sbjct: 329 CTLCRECIRGDEEWEKR--VALHRVKDHFIFTIESTGALPPEVLFTEAVKILEAKCERV 385 [50][TOP] >UniRef100_B9S9W7 DNA-directed RNA polymerase I/III subunits, putative n=1 Tax=Ricinus communis RepID=B9S9W7_RICCO Length = 374 Score = 54.3 bits (129), Expect = 6e-06 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 3/119 (2%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVMVVDPEA 396 SP AT + PE+ + ED+ + ++ E K+ P VFDI+ + ++ V P A Sbjct: 258 SPVATAWYRMLPEVVLLEDIEDEIAEELTKK----CPVNVFDIEDIGNGKKRATVARPRA 313 Query: 395 YSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 219 + E I+ E + V + +D FIFT+ESTGA+ L A+++L+ K + V Sbjct: 314 CTLCRECIRGGEWDKR---VSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLEDKCERV 369 [51][TOP] >UniRef100_Q54SN4 DNA-directed RNA polymerases I and III subunit rpac1 n=1 Tax=Dictyostelium discoideum RepID=RPAC1_DICDI Length = 345 Score = 54.3 bits (129), Expect = 6e-06 Identities = 36/119 (30%), Positives = 65/119 (54%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SP T ++ +P I +++ S+ ++ + ++ P +VFDI+ + QV+ P + Sbjct: 229 SPVCTASYRLQPVISVDK----SIKGDKANQLLEKCPKKVFDIED-SGQVVAARPLDCTM 283 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVRLS 210 E I+ E V+I +D FIF++ESTGA+K+ ++ Q AI+I +K + V S Sbjct: 284 CRECIRDPEFEQN---VKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIVEES 339 [52][TOP] >UniRef100_Q6BV37 DEHA2C05654p n=1 Tax=Debaryomyces hansenii RepID=Q6BV37_DEBHA Length = 335 Score = 53.9 bits (128), Expect = 8e-06 Identities = 37/117 (31%), Positives = 59/117 (50%) Frame = -3 Query: 566 SPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVMVVDPEAYSY 387 SP AT ++ P I I E + E K + P+ V DI+ + +V D + Sbjct: 221 SPVATASYRLMPVITITEPIKG----ESGKRFQKCFPSGVIDINK-NGEAVVKDSRKDTV 275 Query: 386 DDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAVR 216 EV++ E GK V++ K+D FIF VESTGA+ ++ ++ +LK K + +R Sbjct: 276 SREVLRHEEFNGK---VKLGRKRDHFIFNVESTGAMSPEEIFFKSVRVLKNKAEYLR 329