BB922492 ( RCE29808 )

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[1][TOP]
>UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
           Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR
          Length = 248

 Score =  226 bits (577), Expect = 7e-58
 Identities = 112/118 (94%), Positives = 117/118 (99%)
 Frame = -3

Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
           GQIVNR++LTGLILIVQNQITSQALKA+NLL+FKVEIF+ITDLLVN TKHVLKPKHQVLT
Sbjct: 131 GQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQVLT 190

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW
Sbjct: 191 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248

[2][TOP]
>UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SXN9_SOYBN
          Length = 237

 Score =  216 bits (551), Expect = 7e-55
 Identities = 104/118 (88%), Positives = 115/118 (97%)
 Frame = -3

Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
           GQI+NRDTLTGLILIV+N ITSQALKA+NL +FKVEIF+ITDLLVN+TKHVLKPKHQVLT
Sbjct: 120 GQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLT 179

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           DKQK NLLKKY+I+EKQLPRMLQTDAIARYYGL+RGQVVKVTY+GE+TQMHVTYRCVW
Sbjct: 180 DKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237

[3][TOP]
>UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9ST46_RICCO
          Length = 238

 Score =  194 bits (493), Expect = 4e-48
 Identities = 90/118 (76%), Positives = 111/118 (94%)
 Frame = -3

Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
           GQIVN+D+LTGLIL++QNQIT+QA+KA++L  FKVE+F+ITDLLVN+TKHVLKPKHQVLT
Sbjct: 121 GQIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLT 180

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           D++K+ LLK Y I+EKQLPR+L+ DAIARYYGL++GQVVKVTY+GEIT+ HVTYRCVW
Sbjct: 181 DREKQKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238

[4][TOP]
>UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR
          Length = 216

 Score =  183 bits (464), Expect = 9e-45
 Identities = 84/117 (71%), Positives = 106/117 (90%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           QI +RD+LTGLIL++QN IT+QA+KA++L  FK+EIF+ITDLLVN+TKH+LKPKHQVL++
Sbjct: 100 QITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSE 159

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           + K+ LLKKY I+EKQLPR+L+ DAI+RYYGL+RGQVVKVTY G+IT  HVTYRCVW
Sbjct: 160 QAKQRLLKKYSIEEKQLPRLLKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 216

[5][TOP]
>UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QJL2_VITVI
          Length = 229

 Score =  182 bits (463), Expect = 1e-44
 Identities = 87/117 (74%), Positives = 104/117 (88%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           QIVN+D+L+ LIL++QN ITSQALKA++L +F+VE F+ITDLLVN+TKHVLKPKH+VLTD
Sbjct: 113 QIVNKDSLSKLILVLQNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTD 172

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           ++K  LLKKY + EKQLPRMLQ DAIARYYGL++GQVVKV Y GEIT  HVTYRCVW
Sbjct: 173 QEKNKLLKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229

[6][TOP]
>UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis
           thaliana RepID=Q9M1J2_ARATH
          Length = 222

 Score =  169 bits (429), Expect = 1e-40
 Identities = 77/116 (66%), Positives = 101/116 (87%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           I++++T+TGLIL++QN +T+QALKAI L +FKVEIF+ITDLLVN+TKH LKP+HQVL D+
Sbjct: 107 ILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDE 166

Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           +K  LLKK+ I+EKQLPR+ + DAI RYYGL++GQVVKV Y GE+T+ HV +RCVW
Sbjct: 167 EKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[7][TOP]
>UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1
           Tax=Arabidopsis thaliana RepID=Q8L947_ARATH
          Length = 222

 Score =  169 bits (429), Expect = 1e-40
 Identities = 77/116 (66%), Positives = 101/116 (87%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           I++++T+TGLIL++QN +T+QALKAI L +FKVEIF+ITDLLVN+TKH LKP+HQVL D+
Sbjct: 107 ILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDE 166

Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           +K  LLKK+ I+EKQLPR+ + DAI RYYGL++GQVVKV Y GE+T+ HV +RCVW
Sbjct: 167 EKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[8][TOP]
>UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1
           Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH
          Length = 218

 Score =  162 bits (411), Expect = 1e-38
 Identities = 74/115 (64%), Positives = 99/115 (86%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           +++R+ +TGLIL++Q+ IT+QALKA+ L +FKVE+F ITDLLVNV+KHVL+PKHQVL DK
Sbjct: 103 VLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDK 162

Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           +K++LLKK+ I+EKQLPR+   D I RYYGL+ GQV+KVTY  E+++ HVTYRCV
Sbjct: 163 EKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217

[9][TOP]
>UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA
          Length = 223

 Score =  153 bits (386), Expect = 1e-35
 Identities = 68/117 (58%), Positives = 100/117 (85%), Gaps = 1/117 (0%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           ++ R+ LTGLIL++Q+ IT+QALKA+ L +FKVE+F++T+LLVN+TKHVL+PKH VL ++
Sbjct: 107 VLGRENLTGLILVLQSDITNQALKAVELFSFKVELFQLTELLVNITKHVLRPKHHVLNEQ 166

Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQM-HVTYRCVW 216
           +K++L KK+ IQE+QLP++L+ D  A+YYGL++GQVV+VTY GE ++  HV+YRC W
Sbjct: 167 EKESLFKKFSIQEQQLPKLLKKDPTAKYYGLEKGQVVEVTYKGEGSESDHVSYRCAW 223

[10][TOP]
>UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR
          Length = 233

 Score =  145 bits (366), Expect = 2e-33
 Identities = 67/117 (57%), Positives = 96/117 (82%)
 Frame = -3

Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
           GQI+N+++L GLILI+Q+++   A K +    FKVE+F+ITDLLVN+TKHVL+P+  +LT
Sbjct: 116 GQILNKESLHGLILILQSKMNHFAKKELEKFPFKVEVFQITDLLVNITKHVLQPQMDILT 175

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            +QK+ ++ KY +++KQLPRML++DAI +YYGLQ+GQ+VK+TY+GEI    VTYRCV
Sbjct: 176 AEQKQQVMNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKITYSGEIVDHLVTYRCV 232

[11][TOP]
>UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9RGC5_RICCO
          Length = 239

 Score =  142 bits (358), Expect = 2e-32
 Identities = 68/116 (58%), Positives = 91/116 (78%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           QI N+++L GLILI+Q+++   A K +     KVEIF I+DLLVN+TKHVLKP+H+VLT 
Sbjct: 123 QIKNKESLNGLILILQSKMNHYARKELGQFPSKVEIFHISDLLVNITKHVLKPRHEVLTA 182

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           +QK+ LL K+  ++KQLPRML TDAI+RYYG ++GQVVK+TY+G +    VTYRCV
Sbjct: 183 EQKQQLLNKFSSEDKQLPRMLVTDAISRYYGFEKGQVVKITYSGGLVDSLVTYRCV 238

[12][TOP]
>UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein,
           expressed n=1 Tax=Oryza sativa Japonica Group
           RepID=Q2QXY2_ORYSJ
          Length = 335

 Score =  140 bits (352), Expect = 9e-32
 Identities = 67/113 (59%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
 Frame = -3

Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
           + L+ L+LI+Q++I S+A +AI  +  FKV+IF+ TDLLVN+TKHVLKPKH+VL+  QK 
Sbjct: 223 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 282

Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
            LLK+Y++++ QLPRML+TDA+ARYYG  +G VVKVTY GE+T   V YRCV+
Sbjct: 283 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 335

[13][TOP]
>UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ
          Length = 227

 Score =  140 bits (352), Expect = 9e-32
 Identities = 67/113 (59%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
 Frame = -3

Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
           + L+ L+LI+Q++I S+A +AI  +  FKV+IF+ TDLLVN+TKHVLKPKH+VL+  QK 
Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174

Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
            LLK+Y++++ QLPRML+TDA+ARYYG  +G VVKVTY GE+T   V YRCV+
Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 227

[14][TOP]
>UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q2RAP1_ORYSJ
          Length = 227

 Score =  137 bits (346), Expect = 4e-31
 Identities = 66/113 (58%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
 Frame = -3

Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
           + L+ L+LI+Q++I S+A +AI  +  FKV+IF+ TDLLVN+TKHVLKPKH+VL+  QK 
Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174

Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
            LLK+Y++++ QLPRML+TDA+ARYYG  +G VVKV Y GE+T   V YRCV+
Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227

[15][TOP]
>UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
           Tax=Medicago truncatula RepID=Q2HW77_MEDTR
          Length = 224

 Score =  137 bits (346), Expect = 4e-31
 Identities = 66/116 (56%), Positives = 93/116 (80%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           QIV+++ L+ LIL++Q+++TS A K +    FKVEI ++ DLLVNVTKHVL+PK++VLT 
Sbjct: 108 QIVDKERLSRLILVMQSKMTSYARKELENCPFKVEIIQLNDLLVNVTKHVLQPKYEVLTA 167

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            +K+ LL KY ++EKQLP ML+TDAIA YYGL++GQVVK++++GE+    V YRCV
Sbjct: 168 NEKQKLLNKYKVEEKQLPHMLRTDAIASYYGLEKGQVVKISHSGEMFNSLVMYRCV 223

[16][TOP]
>UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=A2ZBC5_ORYSI
          Length = 227

 Score =  137 bits (346), Expect = 4e-31
 Identities = 66/113 (58%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
 Frame = -3

Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
           + L+ L+LI+Q++I S+A +AI  +  FKV+IF+ TDLLVN+TKHVLKPKH+VL+  QK 
Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174

Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
            LLK+Y++++ QLPRML+TDA+ARYYG  +G VVKV Y GE+T   V YRCV+
Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227

[17][TOP]
>UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum
           bicolor RepID=C5Y4H1_SORBI
          Length = 263

 Score =  135 bits (339), Expect = 3e-30
 Identities = 66/116 (56%), Positives = 90/116 (77%), Gaps = 1/116 (0%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           V  + L+ LILI+Q +I S+A +AI  +  +KV+ F+IT+LLVN+TKH LKPKHQVLT +
Sbjct: 148 VKDENLSRLILILQGRIMSKAREAIKEIFPYKVDTFQITELLVNITKHALKPKHQVLTAE 207

Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           +K  LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y  E+T  HVTYRC++
Sbjct: 208 EKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCIF 263

[18][TOP]
>UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
           RepID=B6TJI5_MAIZE
          Length = 264

 Score =  132 bits (331), Expect = 2e-29
 Identities = 65/115 (56%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           V  + L+ LILI+Q +I S   ++I  +  FKV+ F+IT+LLVN+TKHVLKPKH+VLT +
Sbjct: 149 VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 208

Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            K  LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y  E+T  HVTYRC+
Sbjct: 209 GKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 263

[19][TOP]
>UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FYH9_MAIZE
          Length = 248

 Score =  132 bits (331), Expect = 2e-29
 Identities = 65/115 (56%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           V  + L+ LILI+Q +I S   ++I  +  FKV+ F+IT+LLVN+TKHVLKPKH+VLT +
Sbjct: 133 VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 192

Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            K  LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y  E+T  HVTYRC+
Sbjct: 193 GKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 247

[20][TOP]
>UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence
           n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI
          Length = 221

 Score =  129 bits (325), Expect = 1e-28
 Identities = 60/116 (51%), Positives = 88/116 (75%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           Q +NR+ L  LIL++Q+++ S A K ++    KVE F+IT+LL+N+TKHV  PKH++L+ 
Sbjct: 105 QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 164

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T   VTYRCV
Sbjct: 165 QEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 220

[21][TOP]
>UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI0001985D3D
          Length = 1260

 Score =  129 bits (324), Expect = 2e-28
 Identities = 59/116 (50%), Positives = 88/116 (75%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           Q +NR+ L  LIL++Q+++ S A K ++    KVE F+IT+LL+N+TKHV  PKH++L+ 
Sbjct: 105 QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 164

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T   VTYRC+
Sbjct: 165 QEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCI 220

[22][TOP]
>UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5B0H1_VITVI
          Length = 162

 Score =  129 bits (324), Expect = 2e-28
 Identities = 60/116 (51%), Positives = 88/116 (75%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           Q +NR+ L  LIL++Q+++ S A K ++    KVE F+IT+LL+N+TKHV  PKH++L+ 
Sbjct: 46  QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 105

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T   VTYRCV
Sbjct: 106 QEKRKLVNKYKLEDKQXPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 161

[23][TOP]
>UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis
           thaliana RepID=Q9M1H8_ARATH
          Length = 233

 Score =  108 bits (270), Expect = 3e-22
 Identities = 52/116 (44%), Positives = 80/116 (68%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           QI N   L  +IL++Q+++   A KA+    F VE F I DLLVN+TKH+ +PK ++L  
Sbjct: 117 QISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNK 176

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++K+ LL+K+ +++KQLP + + D+  RYYGL++ QVVK+TY+ E     VTYRC+
Sbjct: 177 EEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[24][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
          Length = 206

 Score =  106 bits (264), Expect = 1e-21
 Identities = 54/107 (50%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +T  A   IN ++  F +E+F+  +LLVN+ +HVL P+HQVL++++KK LL++
Sbjct: 99  ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLER 158

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPR+  TD IARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 159 YTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 205

[25][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
           guineensis RepID=B3TLL2_ELAGV
          Length = 204

 Score =  105 bits (262), Expect = 2e-21
 Identities = 55/113 (48%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
 Frame = -3

Query: 551 DTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
           + +T  IL+VQ  +T  A +++  ++ K  +E+F+ T+LLVN+ +HVL P+HQVLT ++K
Sbjct: 91  ENVTRGILVVQQALTPFARQSLAEVSQKYMLEVFQDTELLVNIKEHVLVPEHQVLTSEEK 150

Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           K LL++Y ++E QLPR+  TD IARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 151 KTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 203

[26][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SXZ4_SOYBN
          Length = 206

 Score =  104 bits (260), Expect = 4e-21
 Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           +N + +   IL+ Q  +T  A   I+ ++  F +E+F+  +LLVN+ +H L P+HQVLTD
Sbjct: 90  MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTD 149

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            +KK LL++Y ++E QLPR+  TD +ARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 150 AEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 205

[27][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SVA4_SOYBN
          Length = 206

 Score =  104 bits (260), Expect = 4e-21
 Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           +N + +   IL+ Q  +T  A   I+ ++  F +E+F+  +LLVN+ +H L P+HQVLTD
Sbjct: 90  MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTD 149

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            +KK LL++Y ++E QLPR+  TD +ARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 150 AEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 205

[28][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PEL2_VITVI
          Length = 206

 Score =  104 bits (259), Expect = 5e-21
 Identities = 52/107 (48%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +T  A   IN ++  F +E+F+  +LLVN+ +HVL P+HQVLT ++KK LL++
Sbjct: 99  ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLER 158

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPR+  +D IARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 159 YTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYV 205

[29][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
           thaliana RepID=O81098_ARATH
          Length = 205

 Score =  103 bits (256), Expect = 1e-20
 Identities = 52/107 (48%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +T  A   I+ ++  F +E+F+  ++LVN+ +HVL P+HQVLT ++KK LL++
Sbjct: 98  ILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPR+  TD IARY+GL+RGQVVK+    E    +VTYR V
Sbjct: 158 YTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYV 204

[30][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9RKM1_RICCO
          Length = 225

 Score =  103 bits (256), Expect = 1e-20
 Identities = 53/107 (49%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +T  A   I  +   F +E+F+ ++LLVN+ +HVL P+HQVLT+++KK LL++
Sbjct: 118 ILVVQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLER 177

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPR+  +D IARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 178 YTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 224

[31][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
           RepID=B4FU06_MAIZE
          Length = 210

 Score =  102 bits (253), Expect = 3e-20
 Identities = 51/118 (43%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393
           +++  + ++  +L++Q  +T  A   +  L  K+  EIF+  ++L+N+ +HVL P+HQVL
Sbjct: 92  EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVPEHQVL 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T+++KK LL++Y ++E QLPR+  TD IARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 152 TNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209

[32][TOP]
>UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FEX9_MAIZE
          Length = 127

 Score =  102 bits (253), Expect = 3e-20
 Identities = 51/118 (43%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393
           +++  + ++  +L++Q  +T  A   +  L  K+  EIF+  ++L+N+ +HVL P+HQVL
Sbjct: 9   EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVPEHQVL 68

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T+++KK LL++Y ++E QLPR+  TD IARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 69  TNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 126

[33][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RWG5_PHYPA
          Length = 208

 Score =  102 bits (253), Expect = 3e-20
 Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +T  A + ++ +   + +E+F+  +LLVN+ +HVL P H+VLT  +KK LL++
Sbjct: 101 ILVVQQNLTPFARQCVSEMASKYHLEVFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLER 160

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPRM + D +ARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 161 YTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 207

[34][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
          Length = 210

 Score =  101 bits (252), Expect = 3e-20
 Identities = 51/118 (43%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393
           +++  + ++  +L++Q  +T  A   +  L  K+  EIF+  +LL+N+ +HVL P+HQVL
Sbjct: 92  EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLINIKEHVLVPEHQVL 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            +++KK LL++Y ++E QLPR+  TD IARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 152 NNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209

[35][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q7XUF8_ORYSJ
          Length = 205

 Score =  100 bits (250), Expect = 6e-20
 Identities = 50/107 (46%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +++ A  A+  ++  F +E+F+  +LLVN+  H L P+H++LT +QKK LL++
Sbjct: 98  ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPR+  TD IARYYG++RGQVVK+    E    +VTYR V
Sbjct: 158 YTVKETQLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYV 204

[36][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9ETS9_ORYSJ
          Length = 210

 Score =  100 bits (249), Expect = 8e-20
 Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393
           +++  + ++  +L++Q  +T  A   +  L  K+  EIF+  +LL+N+ +HVL P+HQVL
Sbjct: 92  EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLINIKEHVLVPEHQVL 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            + +KK LL++Y ++E QLPR+  TD IARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 152 NNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209

[37][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FGM1_MAIZE
          Length = 206

 Score =  100 bits (248), Expect = 1e-19
 Identities = 52/115 (45%), Positives = 78/115 (67%), Gaps = 2/115 (1%)
 Frame = -3

Query: 557 NRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           N +   G IL+VQ  +++ A  A+  ++ K  +E+F+  +LLVN+  HVL P+H +LT +
Sbjct: 92  NENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLVNIKDHVLVPEHVLLTPE 150

Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            KK LL++Y ++E QLPR+  TD IARYYG++RGQVVK+T   E    ++TYR V
Sbjct: 151 DKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKITRASETAGRYITYRYV 205

[38][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RKG6_PHYPA
          Length = 208

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +T  A + ++ ++ K  VE+F+  +LLVN+  HVL P+H+VL  ++K  LL++
Sbjct: 101 ILVVQQNLTPFARQCVSEMSSKYHVEVFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQR 160

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPRM + D +ARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 161 YTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 207

[39][TOP]
>UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP
          Length = 216

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 45/115 (39%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITS---QALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
           + +D     I+++  ++TS   QA+ +IN L+ K+E F  ++L+VN+T+H L PKH++++
Sbjct: 98  IKQDGFQNSIIVLHGKLTSHAKQAINSINSLDDKIEYFSESELIVNITEHNLVPKHEIIS 157

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           +++ + L K+Y I+E QLPR+ + D IARY+GLQ+ Q++K+  + E +  +VTYR
Sbjct: 158 EEEARCLFKRYSIRENQLPRINKRDPIARYFGLQKNQIMKIIRSSETSGRYVTYR 212

[40][TOP]
>UniRef100_C5YQI4 Putative uncharacterized protein Sb08g001130 n=1 Tax=Sorghum
           bicolor RepID=C5YQI4_SORBI
          Length = 274

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 44/82 (53%), Positives = 61/82 (74%)
 Frame = -3

Query: 461 IFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRG 282
           +F +   LVN+TKHVLKPKH+VLT ++K  L K Y++ +  LP ML++DA+A Y G ++G
Sbjct: 193 LFNVRSRLVNITKHVLKPKHEVLTVEEKVKLQKDYNVVDSHLPLMLESDAVAHYQGFRQG 252

Query: 281 QVVKVTYTGEITQMHVTYRCVW 216
            VVKVTY  E+T  HVTYRC++
Sbjct: 253 TVVKVTYDNELTGNHVTYRCIF 274

[41][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
           RepID=B7FSY0_PHATR
          Length = 228

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 48/111 (43%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
 Frame = -3

Query: 551 DTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
           ++++  I+I++  IT  A +A+  ++  F++E F+ ++LLV++TKH L P HQVLT  +K
Sbjct: 115 ESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEK 174

Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
             LLK+Y +++ QLPR+   D +ARYYG++RGQVVK+    E    +VTYR
Sbjct: 175 NELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYR 225

[42][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LR68_PICSI
          Length = 194

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 48/105 (45%), Positives = 72/105 (68%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYD 354
           IL+VQ + + +         F +E+F+  +LLVN+ +HVL P+ Q+LT ++KK LL++Y 
Sbjct: 98  ILVVQQEFSGK---------FHLEVFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYT 148

Query: 353 IQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++E QLPRM ++D +ARYYGL+RGQVVK+    E    +VTYR V
Sbjct: 149 LKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV 193

[43][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
           RepID=Q5DDM1_SCHJA
          Length = 206

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVL 393
           Q+    T   ++++ +  +T  A  AI  L+ K  +E F   +L+VN+T+H L P+H VL
Sbjct: 88  QMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMVNITEHQLVPQHDVL 147

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++KK LL++Y ++E QLP+M  +D +ARYYGL+RGQVV++T   E    ++TYR V
Sbjct: 148 TQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPSETAGRYITYRIV 205

[44][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
           Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
          Length = 208

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVL 393
           Q+    T   ++++ +  +T  A  AI  L+ K  +E F   +L+VN+T+H L P+H VL
Sbjct: 90  QMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMVNITEHQLVPQHNVL 149

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++KK LL++Y ++E QLP+M  +D +ARYYGL+RGQVV++T   E    ++TYR V
Sbjct: 150 TQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPSETAGRYITYRIV 207

[45][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
            Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
          Length = 1124

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 49/109 (44%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
 Frame = -3

Query: 533  ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
            I++VQ  +T    Q+L       F +E F+ T+LLVN+  HVL P+H +L+D+QK+ LL+
Sbjct: 1016 IIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLE 1075

Query: 362  KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
            +Y +++ QLPR+   D IARYYG++RGQVV++    E    +VTYR CV
Sbjct: 1076 RYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 1124

[46][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
           putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
          Length = 205

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T+ A  AI+    +  +E F  ++LLVN+TKH L PKH  LT+ +K+NLL +
Sbjct: 98  ILVTQNVLTAFARDAISEAAPRHIIENFMESELLVNITKHELVPKHVPLTNDEKQNLLNR 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPR+   D +ARY+GL RGQVVK+    E    +VTYR V
Sbjct: 158 YRVKEIQLPRIQSADPVARYFGLSRGQVVKIIRPSETAGRYVTYRLV 204

[47][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
           pseudonana CCMP1335 RepID=B8C1Q1_THAPS
          Length = 226

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 46/111 (41%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
 Frame = -3

Query: 551 DTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
           + ++  IL+++  IT  A +A+  ++  F++E F+  +LLV++T+H L P+H VL+  +K
Sbjct: 113 ENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEK 172

Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           + LLK+Y ++E QLPR+   D +ARYYG++RGQVVK+    E    +VTYR
Sbjct: 173 QELLKRYRLRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYR 223

[48][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
           Tax=Theileria annulata RepID=Q4U8E3_THEAN
          Length = 205

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T  A  AI     K  +E F  T+LLVN+TKH L PKH  LT ++K+NLL+K
Sbjct: 98  ILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQK 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E Q+PR+   D +ARY+GL +GQVVK+    E    +VT+R V
Sbjct: 158 YKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLV 204

[49][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
           RepID=Q4N141_THEPA
          Length = 205

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T  A  AI     K  +E F  T+LLVN+TKH L PKH  LT ++K+NLL+K
Sbjct: 98  ILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQK 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E Q+PR+   D +ARY+GL +GQVVK+    E    +VT+R V
Sbjct: 158 YKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLV 204

[50][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
          Length = 213

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 48/112 (42%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
 Frame = -3

Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
           L+  IL+VQ  +T+ A  AI   +   ++E+F  ++L+VN+T H L P+H+ LT ++K+ 
Sbjct: 102 LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTPEEKRL 161

Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           LL++Y ++E QLPR+  +D +ARYYGL++GQV+K+    E    +VTYR CV
Sbjct: 162 LLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213

[51][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6JZQ6_SCHJY
          Length = 211

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           ILI  N +T  A K I+ +   F +E F+ +DL+VN+T H L PKH +LT ++KK LL +
Sbjct: 104 ILIYANNMTPSATKIISTVTGQFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDR 163

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y ++E QLPR+   D +ARY GL+RGQVVK+    E +  + +YR
Sbjct: 164 YKLRETQLPRIQMADPVARYLGLKRGQVVKIVRRSETSGRYNSYR 208

[52][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
          Length = 213

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 48/112 (42%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
 Frame = -3

Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
           L+  IL+VQ  +T+ A  AI   +   ++E+F  ++L+VN+T H L P+H+ LT ++K+ 
Sbjct: 102 LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRL 161

Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           LL++Y ++E QLPR+  +D +ARYYGL++GQV+K+    E    +VTYR CV
Sbjct: 162 LLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213

[53][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8NU15_COPC7
          Length = 273

 Score = 93.6 bits (231), Expect = 9e-18
 Identities = 46/105 (43%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I+I    +TS A K I+ +   +++E F   DLLVN+T H L P+H+VL+ ++KK LL++
Sbjct: 166 IIIFPATMTSSARKVISAMASTYRLEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLER 225

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y +++ QLPR+   D +ARYYGL+RGQVVK+    E +  + +YR
Sbjct: 226 YRLKDTQLPRIQPMDPVARYYGLRRGQVVKIIRPSETSGRYASYR 270

[54][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RWP8_OSTLU
          Length = 205

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
 Frame = -3

Query: 533 ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
           I++VQ  +T    Q+L       F +E F+ T+LLVN+  HVL P+H +L+D QK+ LL 
Sbjct: 97  IIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLD 156

Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           +Y +++ QLPR+   D IARYYG++RGQVV++    E    +VTYR CV
Sbjct: 157 RYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 205

[55][TOP]
>UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi
           RepID=Q4XTK3_PLACH
          Length = 126

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T  A  AI     +  +E F  T+LLVN+TKH L PKH  LT  +K+NLL++
Sbjct: 19  ILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTSDEKRNLLQR 78

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y I+E +LPR+   D + RY+GL +GQVVK+    E    +VTYR V
Sbjct: 79  YKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLV 125

[56][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
          Length = 204

 Score = 92.8 bits (229), Expect = 2e-17
 Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 4/109 (3%)
 Frame = -3

Query: 533 ILIVQNQITS---QALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
           I++VQ  +T    Q+L       F +E F+  +LLVN+T HVL P+H +L+D+QK+ LL 
Sbjct: 96  IIVVQQSLTPFARQSLLECQAQKFYIEQFQEAELLVNITDHVLVPEHILLSDEQKRVLLD 155

Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           +Y ++E QLPR+   D +ARY+G++RGQVV++    E    +VTYR CV
Sbjct: 156 RYKVKETQLPRIQMHDPVARYFGMRRGQVVRIIRPSETAGRYVTYRLCV 204

[57][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
           RepID=A3AV22_ORYSJ
          Length = 217

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 50/119 (42%), Positives = 75/119 (63%), Gaps = 14/119 (11%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +++ A  A+  ++  F +E+F+  +LLVN+  H L P+H++LT +QKK LL++
Sbjct: 98  ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157

Query: 359 YDIQEKQ------------LPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E Q            LPR+  TD IARYYG++RGQVVK+    E    +VTYR V
Sbjct: 158 YTVKETQILSLTQLVKCVNLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYV 216

[58][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
           falciparum 3D7 RepID=Q8ID59_PLAF7
          Length = 205

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T  A  AI     +  +E F  T+LLVN+TKH L P+H  LT  +KKNLL++
Sbjct: 98  ILVTQNILTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQR 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y I E +LPR+   D + RY+GL +GQVVK+    E    +VTYR V
Sbjct: 158 YKIMENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLV 204

[59][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
           RepID=B0D9Y7_LACBS
          Length = 208

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++    +T  A K I  +   +++E F   DLLVN+  H L P+H VL+  +KK LL+K
Sbjct: 101 IIVFPGNMTPSARKVIVAMAQQYRLEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEK 160

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y ++E QLPR+   D +ARYYGL+RGQVVK+T   E +  + +YR
Sbjct: 161 YRLKETQLPRIQLADPVARYYGLRRGQVVKITRPSETSGRYASYR 205

[60][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
           RepID=C6K8L9_CAEBE
          Length = 211

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +    ++  I++VQ  +T  A ++I  +   + +E F   +L+VN+T+H L P+H V+
Sbjct: 93  QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++K  LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 153 TSEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[61][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
           strain H RepID=B3L6X3_PLAKH
          Length = 205

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T  A  AI     +  +E F  T+LLVN+TKH L P+H  LT  +K+NLL++
Sbjct: 98  ILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQR 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y I+E +LPR+   D + RY+GL +GQVVK+    E    +VTYR V
Sbjct: 158 YKIKENKLPRIQDVDPVCRYFGLAKGQVVKIIRPSETAGRYVTYRLV 204

[62][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
           Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
          Length = 205

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T  A  AI     +  +E F  T+LLVN+TKH L P+H  LT  +K+NLL++
Sbjct: 98  ILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQR 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y I+E +LPR+   D + RY+GL +GQVVK+    E    +VTYR V
Sbjct: 158 YKIKENKLPRIQDVDPVCRYFGLAKGQVVKIIRPSETAGRYVTYRLV 204

[63][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MXV4_9CHLO
          Length = 206

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 47/109 (43%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
 Frame = -3

Query: 533 ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
           I++VQ  +T    Q+L      +F +E F+  +LLVN+T+HVL P+H +L+D +K+ LL 
Sbjct: 98  IIVVQASLTPFAKQSLLECASQSFYIEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLA 157

Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           +Y +++ QLPR+   D +ARYYG++RGQVV++    E    +VTYR CV
Sbjct: 158 RYKVKDTQLPRIQLHDPVARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 206

[64][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
           Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
          Length = 206

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 45/105 (42%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++  ++ T  A  A+  +   + +E F  ++LLVN+T+HVL P+H++L+  +K+ LL +
Sbjct: 95  IMVTPSKFTPFAKSALEDMRPKYHIEHFLESELLVNITEHVLVPEHRILSPDEKRTLLDR 154

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y I+E QLPR+  +DA+ARY GLQRGQVV++    E    +VTYR
Sbjct: 155 YKIKETQLPRIQASDAVARYLGLQRGQVVRIVRPSETAGRYVTYR 199

[65][TOP]
>UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium
           RepID=Q5CNJ4_CRYHO
          Length = 205

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 52/107 (48%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           ILI QN +T+ A  AI     K  +E F   +LLVN+TKH L PKH +L+D +K  LL +
Sbjct: 98  ILISQNVLTAHAKVAILDAAPKHYIESFLENELLVNITKHELVPKHILLSDDEKLQLLDR 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y I+E QLPR+   D +ARY+GL +GQVVK+    E    +VTYR V
Sbjct: 158 YKIKETQLPRIQYADPVARYFGLAKGQVVKIIRPSETAGRYVTYRLV 204

[66][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
           theta RepID=Q98RN7_GUITH
          Length = 214

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 41/115 (35%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
           +  +  + +++I+  ++T    QA+ +IN  N  +E F   +L+VN+T H+L PKH++L+
Sbjct: 97  IKNEGFSRVLMILNGKLTPHAKQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILS 156

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
             + K+LL++Y I+   LP++L+ D +A+Y GLQR ++VK+T   E +   +TYR
Sbjct: 157 KNESKSLLERYSIKFDHLPKILKNDPVAKYLGLQRSEIVKITRVSETSGKFITYR 211

[67][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
          Length = 210

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 46/116 (39%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           +  + +T  I++VQ+ +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T 
Sbjct: 94  MQEENITRAIILVQSGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++KK LLKKY ++E QL R+   D +ARYYGL+RGQVVK+    E    +++YR V
Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLV 209

[68][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
           RepID=A8XGH1_CAEBR
          Length = 211

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +    ++  I++VQ  +T  A ++I  +   + +E F   +L+VN+T+H L P+H V+
Sbjct: 93  QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++K  LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[69][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
           Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
          Length = 221

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 44/105 (41%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I+I   +++  A K +  +   + +E F  +DLLVN+TKH L PKH V+  ++K  L+K+
Sbjct: 114 IIIWSEKMSPAAKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKR 173

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y ++E QLPR++ TD +A+YYGL+RGQV+K+    E    ++TYR
Sbjct: 174 YRLKETQLPRIMITDPVAKYYGLKRGQVMKIERASETAGRYITYR 218

[70][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
          Length = 211

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +    ++  I++VQ  +T  A ++I  +   + +E F   +L+VN+T+H L P+H V+
Sbjct: 93  QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++K  LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210

[71][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
           Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
          Length = 210

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++V   IT+ A  A++ LN    +E+F   +L+ N+T+H L  K+ VL D+ KK LL  
Sbjct: 103 IVVVPMAITAPARMAVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNT 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y +Q+ QLPR+L TD +ARYYGL+RGQVVK+  +   +  + TYR
Sbjct: 163 YTVQDTQLPRILVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYR 207

[72][TOP]
>UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium
           muris RN66 RepID=B6AE06_9CRYT
          Length = 205

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           ILI QN +T+ A  AI     K  +E F   +LLVN+T+H L PKH +L+D++K  LL++
Sbjct: 98  ILISQNVLTAHAKVAILDAAPKHYIESFLENELLVNITRHELVPKHVLLSDEEKSQLLER 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E QLPR+   D +ARY+GL + QVVK+    E    +VTYR V
Sbjct: 158 YKVKETQLPRIQHADPVARYFGLAKSQVVKIIRPSETAGRYVTYRLV 204

[73][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caligus clemensi RepID=C1C1G9_9MAXI
          Length = 210

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 46/116 (39%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           +  + +T  I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T 
Sbjct: 94  MQEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++KK LLKKY ++E QL R+   D +ARYYGL+RGQVVK+    E    +++YR V
Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLV 209

[74][TOP]
>UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus
           RepID=Q6MY78_ASPFU
          Length = 220

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           + I Q  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+ ++KKNLL++Y
Sbjct: 114 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 173

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 174 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 219

[75][TOP]
>UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus
           RepID=B0XMP1_ASPFC
          Length = 171

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           + I Q  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+ ++KKNLL++Y
Sbjct: 65  VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 124

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 125 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 170

[76][TOP]
>UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL
          Length = 179

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I QN IT  A K I  +    +E F+ TDL+VN+T H L PKH  L  ++KK LL++Y
Sbjct: 73  IFIYQNSITPSANKLIPTVQPASIETFQETDLIVNITHHELVPKHIKLNREEKKELLERY 132

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +ARY GL+RG+VVK+    E +  + +YR
Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176

[77][TOP]
>UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1D205_NEOFI
          Length = 234

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           + I Q  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+ ++KKNLL++Y
Sbjct: 128 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 188 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233

[78][TOP]
>UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus
           RepID=A1CP51_ASPCL
          Length = 234

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           + I Q  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+ ++KKNLL++Y
Sbjct: 128 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 188 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233

[79][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
          Length = 215

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I QN IT  ALK + ++    +E F  T L+VN+T H L PKH  L+D++KK LLK+Y
Sbjct: 109 IFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +A Y GL+RG+VVK+    E +  + +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

[80][TOP]
>UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1
           Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA
          Length = 202

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 36/84 (42%), Positives = 63/84 (75%)
 Frame = -3

Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
           +E F   ++++N+T+H L PKH+VLT+ +K+ +LK+Y++ E QLPR+L+TD ++RY G++
Sbjct: 119 IEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVK 178

Query: 287 RGQVVKVTYTGEITQMHVTYRCVW 216
            GQ++K+T   +    +VTYR V+
Sbjct: 179 PGQLLKITRNSDTAGHYVTYRLVY 202

[81][TOP]
>UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
           III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG
          Length = 214

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLT 390
           +I  ++  TG I I QN IT  A K I  ++  + E F+ +DL+VN+T H L PKH  L+
Sbjct: 98  RIQEKNFSTG-IFIYQNNITPSANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLS 156

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           D +K  LL++Y ++E QLPR+ + D +ARY GL+RGQVVK+    E +  + +YR
Sbjct: 157 DGEKSQLLQRYKLKESQLPRIQREDPVARYLGLKRGQVVKIIRRSETSGRYASYR 211

[82][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
           Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
          Length = 214

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           I  ++  TG I I QN +T  A K I  ++   +EIF+  DL+VN+T H L PKH  L  
Sbjct: 99  ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNH 157

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           ++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+    E +  + +YR
Sbjct: 158 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211

[83][TOP]
>UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Yarrowia lipolytica RepID=RPAB1_YARLI
          Length = 212

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 45/104 (43%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           IL+ +N +T  A + I ++    ++ F+ TDLLVN+TKHVL P H  L+  +KK LL++Y
Sbjct: 106 ILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERY 165

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +ARY GL+RGQ+VK+    E +  + +YR
Sbjct: 166 RLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209

[84][TOP]
>UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans
           RepID=Q59PF3_CANAL
          Length = 179

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           I  ++  TG I I QN +T  A K I  ++   +EIF+  DL+VN+T H L PKH  L  
Sbjct: 64  ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNR 122

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           ++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+    E +  + +YR
Sbjct: 123 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 176

[85][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
           tropicalis MYA-3404 RepID=C5MBX4_CANTT
          Length = 214

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTD 387
           I  ++  TGL  I QN IT  A K I  ++  V EIF+ +DL+VN+T H L PKH  L+ 
Sbjct: 99  ITEKNFSTGLF-IYQNSITPSANKLIPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSK 157

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            +K  LL++Y ++E QLPR+ + D +ARY GL+RG+VVK+    E +  + +YR
Sbjct: 158 DEKVELLERYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211

[86][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
           albicans RepID=C4YG42_CANAL
          Length = 214

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           I  ++  TG I I QN +T  A K I  ++   +EIF+  DL+VN+T H L PKH  L  
Sbjct: 99  ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNR 157

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           ++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+    E +  + +YR
Sbjct: 158 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211

[87][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
           Tax=Babesia bovis RepID=A7APR4_BABBO
          Length = 205

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T  A  AI     +  +E F  T+LLVN+TKH L PKH  LT  +K+ LL++
Sbjct: 98  ILVTQNVLTPFAKDAILEAAPRNIIENFLETELLVNITKHELVPKHIPLTADEKQTLLQR 157

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           Y ++E Q+PR+   D +ARY+GL +GQVVK+    E    +VT+R V+
Sbjct: 158 YKVKESQIPRIQAADPVARYFGLTKGQVVKIIRPSETAGRYVTFRLVY 205

[88][TOP]
>UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
           RepID=A4QW70_MAGGR
          Length = 259

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNF---KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
           IL+ Q  ++S A +A++       KVE F + DLLVN+T H L PKH +L+  +KK LL+
Sbjct: 122 ILVTQGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLE 181

Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           +Y ++E QLPR+   D +ARY GLQRG VVK+    E    + +YR
Sbjct: 182 RYRLKETQLPRIQTKDPVARYLGLQRGNVVKIIRHSETAGRYASYR 227

[89][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
          Length = 210

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           ILI  N +T  A K I  +   F +E F+ +DL+VN+T H L PKH +L+  +KK LL +
Sbjct: 103 ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y ++E QLPR+   D +ARY GL+RG+VVK+    E +  + +YR
Sbjct: 163 YKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYR 207

[90][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
           intestinalis RepID=UPI000180C3C9
          Length = 210

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +   I++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H VL
Sbjct: 92  QRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPKYILEQFLEQELLINITEHELVPEHVVL 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++K  LL +Y +++ QLPR+   D +ARY+GL+RGQVVK+    E    +VTYR V
Sbjct: 152 TPEEKSELLTRYKLKDHQLPRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYVTYRLV 209

[91][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
           putative n=1 Tax=Entamoeba dispar SAW760
           RepID=B0EA74_ENTDI
          Length = 204

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 40/77 (51%), Positives = 57/77 (74%)
 Frame = -3

Query: 446 DLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKV 267
           +L+VNVT HVL P+H +L+ ++K+ LLKKY ++E QLPR+L +D I++YYG QRG VVK+
Sbjct: 128 ELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187

Query: 266 TYTGEITQMHVTYRCVW 216
               E    +VTYR V+
Sbjct: 188 IRKSETAGRYVTYRAVF 204

[92][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
           HM-1:IMSS RepID=C4LW54_ENTHI
          Length = 204

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 39/77 (50%), Positives = 57/77 (74%)
 Frame = -3

Query: 446 DLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKV 267
           +L+VNVT H+L P+H +L+ ++K+ LLKKY ++E QLPR+L +D I++YYG QRG VVK+
Sbjct: 128 ELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187

Query: 266 TYTGEITQMHVTYRCVW 216
               E    +VTYR V+
Sbjct: 188 IRKSETAGRYVTYRAVF 204

[93][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
           RepID=B3S3Q9_TRIAD
          Length = 210

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 43/118 (36%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q + R+ +   I+I+Q+ +T  A +++  +   + +E F  ++L++N+T+H L PKH V+
Sbjct: 92  QRMQRENINRAIIIIQSGMTPTAKQSLIDMAPKYTLESFMESELMINITEHHLVPKHIVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           + ++K  LL +Y ++E QLPR+   D +ARYYGL+RGQ V++    E    ++TYR V
Sbjct: 152 SPEEKAELLARYKLKEHQLPRIQVGDPVARYYGLKRGQFVRIIRPSETAGRYITYRLV 209

[94][TOP]
>UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR
          Length = 234

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I I    +++QA K +++ +   +VE F   DLLVN+T H L PKH +L+ ++K  LLK+
Sbjct: 127 IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKR 186

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           Y ++E QLPR+L  D IARY GL+RGQVVK+    E    + +YR CV
Sbjct: 187 YRLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234

[95][TOP]
>UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4
           RepID=UPI00004E3EE0
          Length = 181

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN----FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLL 366
           I++VQ  IT  A +A+   +      +E F   +LLVN+T H L PKH +LT ++K  LL
Sbjct: 72  IIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELL 131

Query: 365 KKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
            +Y ++E QLPR+   D +ARYYGL RG VVK+    E    ++TYR CV
Sbjct: 132 TRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 181

[96][TOP]
>UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H038_CHAGB
          Length = 220

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+    +++QA K + + +    +E F   DLLVN+T H L PKH +L+ ++K  LLK+
Sbjct: 113 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKR 172

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           Y ++E QLPR+L  D IARY GL++GQVVK+  T E    + +YR CV
Sbjct: 173 YRLKETQLPRILSKDPIARYLGLKKGQVVKIIRTSETAGRYASYRLCV 220

[97][TOP]
>UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1
           Tax=Dictyostelium discoideum RepID=RPAB1_DICDI
          Length = 197

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN----FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLL 366
           I++VQ  IT  A +A+   +      +E F   +LLVN+T H L PKH +LT ++K  LL
Sbjct: 88  IIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELL 147

Query: 365 KKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
            +Y ++E QLPR+   D +ARYYGL RG VVK+    E    ++TYR CV
Sbjct: 148 TRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 197

[98][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
           RepID=A6N9W6_ORNPR
          Length = 210

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  I++VQ  +T  A +A+  +   + +E F  ++LL+N+T+H L P+H VL
Sbjct: 92  QRMQEENITRAIIVVQQGMTPSAKQALTDMAPKYILEYFLESELLINITEHELVPEHVVL 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++K  LL +Y ++E  L R+   D +ARY+GL+RGQVVK+    E    +++YR V
Sbjct: 152 TPEEKAELLARYKLKENHLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[99][TOP]
>UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN
          Length = 219

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+ ++KK LL +Y
Sbjct: 113 IFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRY 172

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 173 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 218

[100][TOP]
>UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
           RepID=C7Z7I7_NECH7
          Length = 234

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
 Frame = -3

Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291
           K+E F   DLLVN+T H L PKH +L+  +K  LLK+Y ++E QLPR+LQ D +ARY GL
Sbjct: 150 KIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYRLKETQLPRILQRDPVARYLGL 209

Query: 290 QRGQVVKVTYTGEITQMHVTYR-CV 219
           +RGQVVK+    E    + +YR CV
Sbjct: 210 KRGQVVKIIRNSETAGRYASYRLCV 234

[101][TOP]
>UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2VUN9_PYRTR
          Length = 235

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 40/83 (48%), Positives = 59/83 (71%)
 Frame = -3

Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
           VE+F   DLLVN+TKH L PKH +L+D++K+ LL++Y +++ QLPR+  TD +A+Y GL+
Sbjct: 152 VEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLR 211

Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219
           RG VVK+    E    + +YR V
Sbjct: 212 RGSVVKIIRKSETAGRYASYRWV 234

[102][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
           II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
          Length = 213

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I QN IT  A K I  ++   +E F+  DL+VN+T H L PKH  L+  +KK LL +Y
Sbjct: 107 IFIYQNSITPSANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRY 166

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +ARY GL+RG+VVK+    E +  + +YR
Sbjct: 167 RLKESQLPRVQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 210

[103][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186E78B
          Length = 210

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 42/118 (35%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +   I++VQ  +T  A ++++ +   + +E F  ++LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPKYILEQFLESELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++K+ LL++Y ++E QL R+   D +ARY+GL+RGQVVK+    E    +++YR V
Sbjct: 152 TPEEKQELLQRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYISYRLV 209

[104][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
           RepID=UPI000056951D
          Length = 211

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 43/118 (36%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 93  QRMQEENITRAVIVVQTGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 152

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+  +D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 153 TKEEVTELLARYKLKETQLPRIQCSDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 210

[105][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
          Length = 210

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  I++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T  +   LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[106][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
           mordax RepID=C1BIS3_OSMMO
          Length = 210

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  I++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 TKEELSELLTRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[107][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
           Tax=Euteleostei RepID=B5X957_SALSA
          Length = 210

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T   ++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+ Q D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQQGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[108][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
          Length = 210

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 44/118 (37%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  +T+T  I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H VL
Sbjct: 92  QRMQEETITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T  +K+ LL +Y ++E QL R+   D ++RY+GL+RGQVVK+    E    +++YR V
Sbjct: 152 TPDEKQELLCRYKLKENQLMRIQVGDPVSRYFGLKRGQVVKIVRNSETAGRYISYRLV 209

[109][TOP]
>UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE
          Length = 224

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 41/87 (47%), Positives = 59/87 (67%)
 Frame = -3

Query: 485 NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 306
           ++  +  E+F   DL+ +VTKH L P+H +L DK+K+ LLKKY + + QLPR+LQ+D IA
Sbjct: 135 SIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPRILQSDPIA 194

Query: 305 RYYGLQRGQVVKVTYTGEITQMHVTYR 225
           R+ GL  G VVK+    E   ++VTYR
Sbjct: 195 RFLGLHHGDVVKIIRKSETAGLYVTYR 221

[110][TOP]
>UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina
           RepID=B2AZ24_PODAN
          Length = 235

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+    +++QA K + + +    +E F   DLLVN+T H L P H +L+ ++K  LLK+
Sbjct: 128 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKR 187

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           Y ++E QLPR+LQ D IARY GL+RGQVVK+    E    + +YR CV
Sbjct: 188 YRLKETQLPRILQKDPIARYLGLKRGQVVKIVRISETAGRYASYRLCV 235

[111][TOP]
>UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia
           guilliermondii RepID=A5DHL4_PICGU
          Length = 179

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I QN IT  A K +  +    +E F+ +DL+VN+T H L PKH  L+  +KK LL +Y
Sbjct: 73  IFIYQNSITPSANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIKLSIGEKKELLARY 132

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +ARY GL+RG+VVK+    E +  + +YR
Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176

[112][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
           rerio RepID=Q6DEG5_DANRE
          Length = 210

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  I++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[113][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
           Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
          Length = 210

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  I++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[114][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
           RepID=C3ZQF0_BRAFL
          Length = 210

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 43/116 (37%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + ++  I++VQ  +T  A +A+  +   + +E F  ++LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENISRAIIVVQMGMTPSAKQALVDMAPKYILEQFLESELLINITEHQLVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           T ++K  LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    +++YR
Sbjct: 152 TPEEKAELLARYRLKEHQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYR 207

[115][TOP]
>UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4
          Length = 287

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q  IT  A K I  ++   +E+F+ +DL+VN+T H L PKH  L+  +KK LL +Y
Sbjct: 181 IFIYQTSITPSANKLIPTVSPATIEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRY 240

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +ARY GL+RG VVK+    E +  + +YR
Sbjct: 241 RLKESQLPRIQREDPVARYLGLKRGDVVKIIRRSETSGRYASYR 284

[116][TOP]
>UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) =
           Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS
           513.88 RepID=A2QAL5_ASPNC
          Length = 235

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           + I Q  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+  +K  LL++Y
Sbjct: 129 VFITQTPISPSAVRLLSSMPGRICEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLERY 188

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 189 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYRWV 234

[117][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
           Tax=Murinae RepID=RPAB1_MOUSE
          Length = 210

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+G++RGQVVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[118][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
           polypeptide E, 25kDa n=1 Tax=Pan troglodytes
           RepID=UPI0000E24E5A
          Length = 230

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 112 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 171

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+G++RGQVVK+    E    ++TYR V
Sbjct: 172 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 229

[119][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
           Tax=Neognathae RepID=B5FX59_TAEGU
          Length = 210

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+G++RGQVVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[120][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
           RepID=Q28HF5_XENTR
          Length = 210

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T  +   LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[121][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
          Length = 207

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/118 (35%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + ++  +++VQ  +T  A +A+  +   + +E F   +L++N+T+H L P+H ++
Sbjct: 89  QRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILEQFVEAELMINITEHELVPEHVLM 148

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T  +K+ LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 149 TPDEKQELLLRYKLKEHQLPRIQSGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 206

[122][TOP]
>UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE
          Length = 223

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 40/87 (45%), Positives = 59/87 (67%)
 Frame = -3

Query: 485 NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 306
           ++  +  E+F   DL+ +VTKH L P+H +L D++K+ LLKKY + + QLPR+LQ+D IA
Sbjct: 134 SIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGLVDNQLPRILQSDPIA 193

Query: 305 RYYGLQRGQVVKVTYTGEITQMHVTYR 225
           R+ GL  G VVK+    E   ++VTYR
Sbjct: 194 RFLGLHHGDVVKIIRKSETAGLYVTYR 220

[123][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
           RepID=C5DNB3_LACTC
          Length = 215

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I + QN +T  A+K + ++    +E F    L+VN+T H L PKH  L+D++KK LL++Y
Sbjct: 109 IFVYQNGVTPSAMKLLPSVAPATIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRY 168

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +A Y GL+RG VVK+    E +  + +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGDVVKIIRKSETSGRYASYR 212

[124][TOP]
>UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin
           54-1255 RepID=B6HAG0_PENCW
          Length = 234

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 44/106 (41%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+ ++K  LL++Y
Sbjct: 128 IFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERY 187

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 188 RLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233

[125][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
           DSM 70294 RepID=A7TEH4_VANPO
          Length = 215

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I + Q  +T  A+K + ++    +E F    L+VN+T H L PKH  L++ +KK LLKKY
Sbjct: 109 IFVYQTNVTPSAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKY 168

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +A Y GL+RG+VVK+    E +  + +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

[126][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Pongo abelii RepID=RPAB1_PONAB
          Length = 210

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+G++RGQVVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[127][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Homo sapiens RepID=RPAB1_HUMAN
          Length = 210

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+G++RGQVVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[128][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Bos taurus RepID=RPAB1_BOVIN
          Length = 210

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+G++RGQVVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[129][TOP]
>UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1
           RepID=UPI000023E584
          Length = 253

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
 Frame = -3

Query: 563 IVNRDTLTGLIL--IVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
           +++ +  TG+++  +  +    ++L ++  L  K+E F   DLLVN+T H L PKH +L+
Sbjct: 122 VISNNYKTGIMITHVPLSPAARRSLASVESLA-KIECFLEDDLLVNITHHELVPKHVLLS 180

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++K  LLK+Y ++E QLPR+LQ D +ARY GL+RG VVK+    E    + +YR
Sbjct: 181 REEKIALLKRYRLKETQLPRILQKDPVARYLGLKRGHVVKIIRNSETAGRYASYR 235

[130][TOP]
>UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2
           Tax=Emericella nidulans RepID=C8VQY1_EMENI
          Length = 235

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 43/106 (40%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I +  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+ ++K  LL++Y
Sbjct: 129 IFITKTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRY 188

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 189 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 234

[131][TOP]
>UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces
           dermatitidis RepID=C5G7M7_AJEDR
          Length = 236

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q  I+  A++ +N +  +  E F+  +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFISQTPISPSAIRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235

[132][TOP]
>UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
           RepID=C4VBP1_NOSCE
          Length = 204

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 36/106 (33%), Positives = 68/106 (64%)
 Frame = -3

Query: 536 LILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           LIL++  +++S +   +N+ + K+EIF+  +L+ N+TKHV  P+H++L D +K ++L+K 
Sbjct: 91  LILVINQKMSSASQNIVNVSDLKIEIFKDEELMFNITKHVSVPRHRILNDTEKNSILEKL 150

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            I   Q+P++L+ D + R+ G + GQVV++T         + Y+ V
Sbjct: 151 KITVDQMPKILKRDPVCRFLGAESGQVVEITRKSRTAGESIFYKVV 196

[133][TOP]
>UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357
           RepID=B8N6W2_ASPFN
          Length = 171

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 44/116 (37%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTD 387
           +V+ +     + I Q  I+  A++ ++ +  ++ E F+  DLLVN+T+H L PKH +L+ 
Sbjct: 55  VVDENNFHTGVFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSP 114

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++K  LL +Y ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 115 EEKAKLLARYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYRWV 170

[134][TOP]
>UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
           RepID=B6QBA8_PENMQ
          Length = 172

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I +  I+  A++ +N  +    E F+ +DLLVN+T H L PKH +L+ ++K  LL++Y
Sbjct: 66  IFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 125

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 126 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 171

[135][TOP]
>UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
           RepID=B6QBA7_PENMQ
          Length = 236

 Score = 84.7 bits (208), Expect = 4e-15
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I +  I+  A++ +N  +    E F+ +DLLVN+T H L PKH +L+ ++K  LL++Y
Sbjct: 130 IFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 189

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 190 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 235

[136][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
           RepID=UPI0000587A08
          Length = 210

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  I+ VQ ++T  A  ++  +   + +E F   +LL+N+T+H   P+H V+
Sbjct: 92  QRMQEENITRAIITVQEKMTPSAKTSLGDMAPKYILEQFLEAELLINITEHDFVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++K  LL +Y +++ QLPR+   D +ARY+GL+RGQVVK+    E    +++YR V
Sbjct: 152 TGEEKAELLARYKLKDHQLPRIQVGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[137][TOP]
>UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23
           kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
           RepID=B4DJ89_HUMAN
          Length = 117

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 41/116 (35%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+T 
Sbjct: 1   MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           ++   LL +Y ++E QLPR+   D +ARY+G++RGQVVK+    E    ++TYR V
Sbjct: 61  EEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 116

[138][TOP]
>UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb01 RepID=C1GUJ0_PARBA
          Length = 236

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q  I+  A++ +N +  +  E F+  +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235

[139][TOP]
>UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb18 RepID=C1FYH2_PARBD
          Length = 236

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q  I+  A++ +N +  +  E F+  +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235

[140][TOP]
>UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb03 RepID=C0S407_PARBP
          Length = 171

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q  I+  A++ +N +  +  E F+  +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 65  IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 124

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 125 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 170

[141][TOP]
>UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
           RepID=C0NL28_AJECG
          Length = 236

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I + Q  I+  A++ +N +  +  E F+  +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYRWV 235

[142][TOP]
>UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN
          Length = 236

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I + Q  I+  A++ +N +  +  E F+  +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYRWV 235

[143][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5DLP1_DROPS
          Length = 320

 Score = 84.0 bits (206), Expect = 7e-15
 Identities = 43/105 (40%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+V++ +T  A ++I  +   + +E F  ++L +NVTKH L P+H VL++ +KK L + 
Sbjct: 103 ILVVRDCLTPPAKQSIMAMAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRC 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y ++E Q+ RML +D +ARYYGL+ GQVVK+    E    +++YR
Sbjct: 163 YRLKESQMMRMLSSDPVARYYGLKPGQVVKIVRASESAGKYISYR 207

[144][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
           vitripennis RepID=UPI00015B5456
          Length = 210

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 43/118 (36%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +   I++VQ+ +T  A +++  +   + +E F  ++LL+N+T+H L P+H VL
Sbjct: 92  QRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T  +K+ LL +Y ++E QL R+   D +ARY+GL+RGQVVK+    E    +++YR V
Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQANDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[145][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
          Length = 210

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  I++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           + ++   LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 SKEEVVELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[146][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Esox lucius RepID=C1BZT4_ESOLU
          Length = 210

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T   ++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[147][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Salmo salar RepID=B5X8S7_SALSA
          Length = 210

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T   ++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D +ARY+GL+RGQVVK+    E    ++TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[148][TOP]
>UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum
           canis CBS 113480 RepID=C5FC74_NANOT
          Length = 236

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLT 390
           Q +++      I I Q+ I+  A++ +  +  +  E F   +LLVN+T H L PKH +L+
Sbjct: 119 QFIDQQNYHAGIFITQSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLS 178

Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++KK LL++Y ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 179 AEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235

[149][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
           Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
          Length = 215

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I + QN IT  A+K + ++    +E F    L+VN+T H L PKH  L+  +K+ LLK+Y
Sbjct: 109 IFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +A Y GL+RG+VVK+    E +  + +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

[150][TOP]
>UniRef100_A2DEU9 RNA polymerase Rpb5, C-terminal domain containing protein n=1
           Tax=Trichomonas vaginalis G3 RepID=A2DEU9_TRIVA
          Length = 217

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
 Frame = -3

Query: 545 LTGLILIVQN----QITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
           +T LIL+ Q      I  +  K + L+  K+E F + +L  N+T H   PKH+VL++++K
Sbjct: 104 ITHLILVHQEGSLAHIFDRIKKQLRLIGKKLETFTLQELQYNITMHFFVPKHKVLSNEEK 163

Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
             L  +Y I E +LP++L TD + RYYG   G ++++T   E     VTYR V
Sbjct: 164 NELFNRYKIDETKLPQILSTDPVVRYYGADPGAIIEITRRSETCGRVVTYRLV 216

[151][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
           RepID=C5DR69_ZYGRC
          Length = 215

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I + QN +T  A+K + ++    +E F    L+VN+T H L PKH   ++ +K+ LLK+Y
Sbjct: 109 IFVYQNNVTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRY 168

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +A Y GL+RG+VVK+    E +  + +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

[152][TOP]
>UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500
           RepID=B8M3B9_TALSN
          Length = 236

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I +  I+  A++ ++  +    E F+ +DLLVN+T H L PKH +L+ ++K  LL++Y
Sbjct: 130 IFITRTAISPSAMRLLSSAVGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 189

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+  +D +ARY GL+RGQVVK+    E    + +YR V
Sbjct: 190 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 235

[153][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
          Length = 214

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q+ IT  A K I  ++   +E F+  DL+VN+T H L PKH  L   +KK LL++Y
Sbjct: 108 IFIYQSSITPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERY 167

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D + RY GL+RG+VVK+    E +  + +YR
Sbjct: 168 RLKESQLPRIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211

[154][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Candida glabrata RepID=RPAB1_CANGA
          Length = 215

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I QN IT  A+K + ++    +E F    L+VN+T H L PKH  L +++K  LLK+Y
Sbjct: 109 IFIYQNNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRY 168

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            ++E QLPR+ + D +A Y GL+RG+VVK+    E    + +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212

[155][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
           RepID=UPI00003C0CAC
          Length = 210

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +   I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H VL
Sbjct: 92  QRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T  +K+ LL +Y ++E QL R+   D +ARY+GL+RGQVVK+    E    +++YR V
Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[156][TOP]
>UniRef100_Q24FV0 RNA polymerase Rpb5, C-terminal domain containing protein n=1
           Tax=Tetrahymena thermophila SB210 RepID=Q24FV0_TETTH
          Length = 275

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 39/85 (45%), Positives = 54/85 (63%)
 Frame = -3

Query: 473 FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYG 294
           +K EIF   DL++N+TKH L PKH  L   +KK L+ KY I + QLP++L TD I +Y+G
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFG 249

Query: 293 LQRGQVVKVTYTGEITQMHVTYRCV 219
           L+  QV K+    E    ++TYR V
Sbjct: 250 LRTKQVFKIERDSETAGKYITYRIV 274

[157][TOP]
>UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
           VaMs.102 RepID=C9S900_9PEZI
          Length = 231

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAI-NLLNF-KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++  + +TS   K + +L +F ++E F   DLLVN+T H L PKH +L+  +K  LLK+
Sbjct: 124 IMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKR 183

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           Y ++E QLPR+ + D +ARY GL+RG VVK+    E    + +YR
Sbjct: 184 YRLKETQLPRIKREDPVARYLGLKRGNVVKIIRNSETAGRYASYR 228

[158][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
           RepID=Q9LUR5_ARATH
          Length = 178

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
 Frame = -3

Query: 548 TLTGLILIVQN--QITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQ 381
           T+   IL+VQ+    + QAL  +  +   F +E+F+  +L+VNV +HV  P+HQ LT ++
Sbjct: 64  TMIRAILVVQDIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEE 123

Query: 380 KKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           K+  L++   +   LPR+  TD IARY+GL+RG+VVK++   E +  ++TYR V
Sbjct: 124 KQKFLERKRTRFVVLPRIHVTDPIARYFGLKRGEVVKISRLSETSGRYITYRYV 177

[159][TOP]
>UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0UZB4_PHANO
          Length = 277

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
 Frame = -3

Query: 533 ILIVQNQITSQALK----AINLLNFK---VEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
           I++    IT  A++    A NL +     +E+F   DLLVN+TKH L PKH +L+ ++K 
Sbjct: 165 IMVTVKPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKA 224

Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            LL +Y ++E QLPR+  TD +A++ GL+RG VVK+    E    + +YR V
Sbjct: 225 QLLTRYRLKETQLPRIQSTDPVAKFLGLRRGSVVKIIRKSETAGRYASYRWV 276

[160][TOP]
>UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium
           yoelii yoelii RepID=Q7RKX0_PLAYO
          Length = 112

 Score = 80.9 bits (198), Expect = 6e-14
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+ QN +T  A  AI     +  +E F  T+LLVN+TKH L PKH  LT  +K+NLL++
Sbjct: 19  ILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTSDEKRNLLQR 78

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVK 270
           Y I+E +LPR+   D + RY+GL +GQV K
Sbjct: 79  YKIKENKLPRIQDVDPVCRYFGLSKGQVQK 108

[161][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
          Length = 210

 Score = 80.9 bits (198), Expect = 6e-14
 Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E  L R+   D +ARY+GL+RGQVVK+  + E    +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[162][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
          Length = 215

 Score = 80.9 bits (198), Expect = 6e-14
 Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           I  ++  TG I I Q+ IT  A K +       +E F    L+VN+T H L PKH  L+D
Sbjct: 100 ITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSD 158

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            +KK LLK+Y ++E QLPR+ + D +A Y GL+RG+V+K+    E +  + +YR
Sbjct: 159 AEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212

[163][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D56A05
          Length = 210

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E  L R+   D +ARY+GL+RGQVVK+    E    +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[164][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
          Length = 210

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E  L R+   D +ARY+GL+RGQVVK+  + E    +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[165][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
          Length = 210

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E  L R+   D +ARY+GL+RGQVVK+  + E    +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[166][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
          Length = 210

 Score = 80.5 bits (197), Expect = 8e-14
 Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
 Frame = -3

Query: 551 DTLTGLILIVQNQITSQALKAINLL-----NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           D L   I++ Q ++   A   I++L      + VE F   +L+ NVT+H L P H++L +
Sbjct: 91  DNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVETFAEAELVYNVTRHHLVPHHEILKE 150

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            +K+ LL++Y + E +LP++   D + RY+G Q+GQV+++  + +    +VTYR V
Sbjct: 151 SEKQQLLERYCVSEDRLPQIQPNDPVCRYFGAQKGQVLRIVRSSQTAGRYVTYRIV 206

[167][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
          Length = 210

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E  L R+   D +ARY+GL+RGQVVK+    E    +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRASETAGRYISYRLV 209

[168][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
          Length = 210

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T + K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E  L R+   D +ARY+GL+RGQVVK+  + E    +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[169][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
          Length = 210

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T + K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E  L R+   D +ARY+GL+RGQVVK+  + E    +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[170][TOP]
>UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides
           RepID=C5PAC2_COCP7
          Length = 236

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q+ I+  A++ +  +  +  E F   +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFITQSPISPSAIRLLTGIPGRFCEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 190 RLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235

[171][TOP]
>UniRef100_Q4YN14 Putative uncharacterized protein n=1 Tax=Plasmodium berghei
           RepID=Q4YN14_PLABE
          Length = 117

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 36/74 (48%), Positives = 51/74 (68%)
 Frame = -3

Query: 440 LVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTY 261
           +VN+TKH L P+H  LT  +K+NLL++Y I+E +LPR+   D + RY+GL +GQVVK+  
Sbjct: 16  VVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIR 75

Query: 260 TGEITQMHVTYRCV 219
             E    +VTYR V
Sbjct: 76  PSETAGRYVTYRLV 89

[172][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
           RepID=B0X7A5_CULQU
          Length = 210

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           I++VQ  +T  A +++  +   + +E F  ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLAR 162

Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           Y ++E  L R+   D +ARY+GL+RGQVVK+    E    +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[173][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
          Length = 215

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
 Frame = -3

Query: 563 IVNRDTLTGLILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           I  ++  TG I I Q+ IT  A K +       +E F    L+VN+T H L PKH  L++
Sbjct: 100 ITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSE 158

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
            +KK LLK+Y ++E QLPR+ + D +A Y GL+RG+V+K+    E +  + +YR
Sbjct: 159 AEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212

[174][TOP]
>UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE
          Length = 239

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
           I I Q+ I+  A++ +  +  +  E F   +LLVN+T H L PKH +L+ ++KK LL +Y
Sbjct: 133 IFITQSPISPSAVRLLTGIPGRFCEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHRY 192

Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            ++E QLPR+   D +A+Y GL+RGQVVK+    E    + +YR V
Sbjct: 193 RLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 238

[175][TOP]
>UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi
           RepID=Q8T1Q5_TRYCR
          Length = 219

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
 Frame = -3

Query: 536 LILIVQ---NQITSQALKAINL--LNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
           +I++VQ   N I  + ++ IN   L  K+++F   DL+VN+T H L PKH  L D++ K 
Sbjct: 108 VIIVVQGRINAIVKRHVEDINRSSLGLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167

Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           +L+ + ++   LPR+L TD +A Y GL+RG+VV++         +VTYR V
Sbjct: 168 MLQAHALELSALPRILSTDPVAAYLGLERGRVVRIERKSMSAGFYVTYRQV 218

[176][TOP]
>UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
           braziliensis RepID=A4H9I9_LEIBR
          Length = 239

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 37/86 (43%), Positives = 58/86 (67%)
 Frame = -3

Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297
           + + E+F   +L VN+T H L PKH  L++++ K++L  + ++  QLPR+L TD +ARYY
Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVLHAHALELHQLPRILSTDPVARYY 212

Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219
           GL+RGQVV++        ++VTYR V
Sbjct: 213 GLKRGQVVRIERKSMSAGLYVTYRQV 238

[177][TOP]
>UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE
          Length = 176

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
 Frame = -3

Query: 464 EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQR 285
           + F   +L+VNVTKH L PKH + T ++K  LL++Y ++E+QLPR+  TD IARY GL+R
Sbjct: 93  DFFEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIKVTDPIARYLGLKR 152

Query: 284 GQVVKVTYTGEITQ-MHVTYRCVW 216
           GQVVK+      T   +V+YR V+
Sbjct: 153 GQVVKIIRENSPTAGRYVSYRLVF 176

[178][TOP]
>UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major
           RepID=Q4QDW4_LEIMA
          Length = 239

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 36/86 (41%), Positives = 58/86 (67%)
 Frame = -3

Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297
           + + E+F   +L VN+T H L PKH  L++++ +++L  + ++  QLPR+L TD +ARYY
Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVLHAHALELNQLPRILSTDPVARYY 212

Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219
           GL+RGQVV++        ++VTYR V
Sbjct: 213 GLRRGQVVRIERKSMSAGLYVTYRQV 238

[179][TOP]
>UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
           infantum RepID=A4HXV2_LEIIN
          Length = 239

 Score = 77.8 bits (190), Expect = 5e-13
 Identities = 36/86 (41%), Positives = 58/86 (67%)
 Frame = -3

Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297
           + + E+F   +L VN+T H L PKH  L++++  ++L+ + ++  QLPR+L TD +ARYY
Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHSPLSEEELTDVLQAHALELNQLPRILSTDPVARYY 212

Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219
           GL+RGQVV++        ++VTYR V
Sbjct: 213 GLKRGQVVRIERKSMSAGLYVTYRQV 238

[180][TOP]
>UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1
           Tax=Trypanosoma brucei RepID=Q388R5_9TRYP
          Length = 219

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
 Frame = -3

Query: 536 LILIVQNQITSQALKAINLLNF-----KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
           +I++   ++ +   + ++ +N      KV++F   DL+VN+T H L PKH  L D++ K 
Sbjct: 108 VIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167

Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           +L+ + ++   LPR+L TD +A Y GL+RG+VV++         +VTYR V
Sbjct: 168 MLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQV 218

[181][TOP]
>UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2
           Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG
          Length = 219

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
 Frame = -3

Query: 536 LILIVQNQITSQALKAINLLNF-----KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
           +I++   ++ +   + ++ +N      KV++F   DL+VN+T H L PKH  L D++ K 
Sbjct: 108 VIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167

Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           +L+ + ++   LPR+L TD +A Y GL+RG+VV++         +VTYR V
Sbjct: 168 MLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQV 218

[182][TOP]
>UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
           1980 UF-70 RepID=A7ECH0_SCLS1
          Length = 242

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 35/82 (42%), Positives = 54/82 (65%)
 Frame = -3

Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291
           ++E F   DLLVN+T H L PKH +L+ +++  LL +Y +++ QLPR+   D +A+Y GL
Sbjct: 157 RIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYRLKDTQLPRIQAADPVAKYLGL 216

Query: 290 QRGQVVKVTYTGEITQMHVTYR 225
           +RGQVVK+    E    + +YR
Sbjct: 217 RRGQVVKIIRKSETAGRYASYR 238

[183][TOP]
>UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
           B05.10 RepID=A6SPK6_BOTFB
          Length = 242

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 35/82 (42%), Positives = 54/82 (65%)
 Frame = -3

Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291
           ++E F   DLLVN+T H L PKH +L+ +++  LL +Y +++ QLPR+   D +A+Y GL
Sbjct: 157 RIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYRLKDTQLPRIQAADPVAKYLGL 216

Query: 290 QRGQVVKVTYTGEITQMHVTYR 225
           +RGQVVK+    E    + +YR
Sbjct: 217 RRGQVVKIIRKSETAGRYASYR 238

[184][TOP]
>UniRef100_A7QJL5 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QJL5_VITVI
          Length = 67

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 34/41 (82%), Positives = 36/41 (87%)
 Frame = -3

Query: 338 LPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
           LPRMLQ DAIARYYGL++GQVVKV Y GEIT  HVTYRCVW
Sbjct: 27  LPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 67

[185][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
          Length = 210

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 37/116 (31%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           +  +++   I++VQN IT  A +A+  +   + +E F   +L+ N+T++   P+H V+T 
Sbjct: 94  MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            +K+ LL +Y ++E  L R+   D ++RY+GL+ GQVVK+  + +    +++YR V
Sbjct: 154 DEKQELLSRYKLRESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKTAGRYISYRIV 209

[186][TOP]
>UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans
           RepID=Q3LW39_BIGNA
          Length = 204

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 35/108 (32%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
 Frame = -3

Query: 536 LILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
           +I I +  ++ Q   A++    NF +EIF   ++L+N  KH L PKH +L    K+ +LK
Sbjct: 96  IIFITKRYLSKQTNIALSHFRRNFNIEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILK 155

Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            Y++++ QLP++  +D I++YYG ++G + K+    E   ++++YR +
Sbjct: 156 SYNVKDSQLPKIKLSDPISKYYGAKKGNMFKIIRFSENIGVYLSYRII 203

[187][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5E0K0_DROPS
          Length = 210

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 37/116 (31%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           +  +++   I++VQN IT  A +A+  +   + +E F   +L+ N+T++   P+H V+T 
Sbjct: 94  MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153

Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
            +K+ LL +Y ++E  L R+   D ++RY+GL+ GQVVK+  + +    +++YR V
Sbjct: 154 DEKQELLSRYKLKESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKSAGRYISYRIV 209

[188][TOP]
>UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SWJ6_PHYPA
          Length = 211

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAIN--LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
           + R+ +   + +VQ  IT  + + I+     + +E+F   + LVN+T+  L P H++LT 
Sbjct: 91  MKRENVPRAVFVVQQHITPLSKQYISRKAQKYHLEVFLEPEFLVNITECYLVPLHEILTP 150

Query: 386 KQKKNLLKKYD----IQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           ++K  LL++Y     +    LP M   D +ARYYG+  GQVVK+  + E    +VTYR
Sbjct: 151 EEKNTLLERYTEGNPVMLVLLPWMQHNDPVARYYGINPGQVVKIIQSSETAGRYVTYR 208

[189][TOP]
>UniRef100_Q8SRJ3 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
           RepID=Q8SRJ3_ENCCU
          Length = 212

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
 Frame = -3

Query: 554 RDTLTGLILIVQNQITSQALKAINLL-NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
           +D +  LILI+    +   +  I L   F +EIF + +L+ N TKH   P H+VL+ +++
Sbjct: 95  KDNMFHLILILPQLPSPTVMSMIPLTPRFSIEIFLVEELIFNKTKHSWVPPHRVLSREER 154

Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           +++ +   +    LPR+L++D IARYYG ++G VV++T   +     + YR V
Sbjct: 155 ESVFRTLKLGPGDLPRILKSDVIARYYGAKQGDVVEITRRSKTAGESIYYRVV 207

[190][TOP]
>UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1
           Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH
          Length = 202

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 37/113 (32%), Positives = 63/113 (55%)
 Frame = -3

Query: 557 NRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
           +  +++ LILI  N++   AL  ++  NF +E+F   D+L N TKH+L P H++++ ++K
Sbjct: 88  SNQSISKLILISCNKLNHAALAYLDKSNFSIELFLYKDILFNPTKHILVPHHKIMSIEEK 147

Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
             LL         LP +L+ D IA+Y G +   V+++T   + T     YR V
Sbjct: 148 TTLLNNLKCSLDDLPIILKKDVIAKYLGAELNDVIEITRKSKTTGESKYYRVV 200

[191][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
           isoform 1 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A3E0E
          Length = 208

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D  ARY+G  + +VVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDQKARYFG--KSEVVKIIRPSETAGRYITYRLV 207

[192][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
           polymerases I, II, and III subunit ABC1) (DNA-directed
           RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
           polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
           lupus familiaris RepID=UPI0000EB19D6
          Length = 212

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRG--QVVKVTYTGEITQMHVTYRCV 219
           T ++   LL +Y ++E QLPR+   D  ARY+G      QVVK+    E    ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDQKARYFGKSEADPQVVKIIRPSETAGRYITYRLV 211

[193][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
           n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
          Length = 278

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 34/98 (34%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
 Frame = -3

Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
           Q +  + +T  +++VQ  +T  A +++  +   + +E F   +LL+N+T+H L P+H V+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQ 279
           T ++   LL +Y ++E QLPR+   D +ARY+G++RGQ
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQ 189

[194][TOP]
>UniRef100_A8BWP9 RNA polymerase II subunit Rpb5a n=2 Tax=Giardia intestinalis
           RepID=A8BWP9_GIALA
          Length = 229

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 33/81 (40%), Positives = 53/81 (65%)
 Frame = -3

Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
           +E F +T LL+N+TKHVL PKH +L++ +K  +LK+Y   E Q+P +  +D +ARY GL 
Sbjct: 146 IEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLL 205

Query: 287 RGQVVKVTYTGEITQMHVTYR 225
              VV+++   E   ++ T+R
Sbjct: 206 PNDVVRISRPSETVGIYTTFR 226

[195][TOP]
>UniRef100_C6LZS6 RNA polymerase II subunit Rpb5a n=1 Tax=Giardia intestinalis ATCC
           50581 RepID=C6LZS6_GIALA
          Length = 229

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 32/81 (39%), Positives = 53/81 (65%)
 Frame = -3

Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
           +E F +T LL+N+T+HVL PKH +L++ +K  +LK+Y   E Q+P +  +D +ARY GL 
Sbjct: 146 IEHFLVTRLLINITRHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLL 205

Query: 287 RGQVVKVTYTGEITQMHVTYR 225
              VV+++   E   ++ T+R
Sbjct: 206 PNDVVRISRPSETVGIYTTFR 226

[196][TOP]
>UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative
           (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5LN15_9ALVE
          Length = 168

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
 Frame = -3

Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
           L+  IL+VQ  +T+ A  AI   +   ++E+F  ++L+VN+T H L P+H+ LT ++K+ 
Sbjct: 68  LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRL 127

Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
           LL++Y ++E QLPR+  +D            V+K+    E    +VTYR CV
Sbjct: 128 LLERYKVKENQLPRIQSSD-----------PVMKIIRPSETAGRYVTYRLCV 168

[197][TOP]
>UniRef100_C6LZX1 RNA polymerase II subunit Rpb5b n=1 Tax=Giardia intestinalis ATCC
           50581 RepID=C6LZX1_GIALA
          Length = 201

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
 Frame = -3

Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVL 393
           GQ ++++ +   + I     T+       ++N  +++I+  +  L+N TKH L PKH +L
Sbjct: 83  GQYLDQEAVQKCLFIYFGGPTTSCRSEHRVINDVEIDIYDFSQFLINPTKHSLVPKHTIL 142

Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
           +  +K  +L +  + E Q+P +  +D I R+Y  + G +++V  T   T  H+ YR
Sbjct: 143 SSTEKARVLAELRVTEAQIPLIQASDPIMRWYDAKPGDLIRVMRTSSSTGKHLYYR 198

[198][TOP]
>UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
           RepID=B6SJT2_MAIZE
          Length = 154

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = -3

Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
           V  + L  LILI+Q +I S   ++I  +  FKV+ F+IT+LLVN+TKHVLKPKH+VLT +
Sbjct: 92  VKDENLARLILILQGKIMSPTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 151

Query: 383 QK 378
            K
Sbjct: 152 GK 153

[199][TOP]
>UniRef100_C9RDL1 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus vulcanius M7
           RepID=C9RDL1_9EURY
          Length = 84

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 24/75 (32%), Positives = 47/75 (62%)
 Frame = -3

Query: 443 LLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 264
           +++ VT H+L PKH+++  ++   +LKKY+I+ +QLP++ + D + +  G + G V+K+T
Sbjct: 5   IILKVTNHILVPKHEIVPKEEVDEILKKYNIKIQQLPKIYEDDPVIQEIGAKEGDVIKIT 64

Query: 263 YTGEITQMHVTYRCV 219
                  + + YR V
Sbjct: 65  RNSPTAGLSIAYRLV 79

[200][TOP]
>UniRef100_A8B5W9 RNA polymerase II subunit Rpb5b n=2 Tax=Giardia intestinalis
           RepID=A8B5W9_GIALA
          Length = 201

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 27/82 (32%), Positives = 48/82 (58%)
 Frame = -3

Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291
           +V+I   +  L+N TKH L PKH +L++ +K  +L +  + E Q+P +  +D I R+Y  
Sbjct: 117 EVDIHDFSQFLINPTKHRLVPKHTILSNTEKARVLAELRVTEAQIPLIQTSDPIMRWYDA 176

Query: 290 QRGQVVKVTYTGEITQMHVTYR 225
           + G ++++T T      H+ YR
Sbjct: 177 KPGDLIRITRTSGSAGKHLYYR 198

[201][TOP]
>UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide E, partial n=1 Tax=Hydra magnipapillata
           RepID=UPI0001925DCF
          Length = 187

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 34/91 (37%), Positives = 51/91 (56%)
 Frame = -3

Query: 416 LKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMH 237
           L P+H VL+ ++K  LL +Y +++ QLPR+ Q D IARY+GL+RGQ V   Y      + 
Sbjct: 101 LVPEHVVLSPEEKAELLTRYKLKDHQLPRIQQGDTIARYFGLKRGQFVCTFY----FNLG 156

Query: 236 VTYRCVW*YFLGLGFSLVLLFEFSEFICCIV 144
           V   C+   +  +GF L     F  + C +V
Sbjct: 157 VWQHCISSQYEVIGFFL-NFDNFGSYTCVVV 186

[202][TOP]
>UniRef100_O27122 DNA-directed RNA polymerase subunit H n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=RPOH_METTH
          Length = 77

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 26/71 (36%), Positives = 42/71 (59%)
 Frame = -3

Query: 431 VTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGE 252
           + KH L P+H +L + + K +LK+ D   +QLP++  TD +A+  G +RG +VK+     
Sbjct: 5   ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64

Query: 251 ITQMHVTYRCV 219
             +  VTYR V
Sbjct: 65  TAEEFVTYRLV 75

[203][TOP]
>UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa
           Japonica Group RepID=B7EQI7_ORYSJ
          Length = 167

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 27/68 (39%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +++ A  A+  ++  F +E+F+  +LLVN+  H L P+H++LT +QKK LL++
Sbjct: 98  ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157

Query: 359 YDIQEKQL 336
           Y ++E Q+
Sbjct: 158 YTVKETQV 165

[204][TOP]
>UniRef100_Q4QDW3 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania major
           RepID=Q4QDW3_LEIMA
          Length = 342

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 28/83 (33%), Positives = 46/83 (55%)
 Frame = -3

Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
           +++F    L  NV +H   P+H  LT  + +  L +  +   QLPRM ++D + +Y GLQ
Sbjct: 259 IQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQ 318

Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219
           RG +V +T  G+ +  +  YR V
Sbjct: 319 RGSIVHITREGKQSGPYSMYRHV 341

[205][TOP]
>UniRef100_A4HXV3 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania
           infantum RepID=A4HXV3_LEIIN
          Length = 342

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 28/83 (33%), Positives = 46/83 (55%)
 Frame = -3

Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
           +++F    L  NV +H   P+H  LT  + +  L +  +   QLPRM ++D + +Y GLQ
Sbjct: 259 IQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQ 318

Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219
           RG +V +T  G+ +  +  YR V
Sbjct: 319 RGSIVHITREGKQSGPYSMYRHV 341

[206][TOP]
>UniRef100_UPI000155C2F2 PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide E, 25kDa n=1 Tax=Ornithorhynchus anatinus
           RepID=UPI000155C2F2
          Length = 60

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 25/59 (42%), Positives = 39/59 (66%)
 Frame = -3

Query: 395 LTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
           +T ++   LL +Y ++E QLPR+   D +ARY+G++RGQVVK+    E    ++TYR V
Sbjct: 1   MTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 59

[207][TOP]
>UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=A9NTD1_PICSI
          Length = 191

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 27/68 (39%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
 Frame = -3

Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
           IL+VQ  +T  A +++   +  F +E+F+  +LLVN+ +HVL P+ Q+LT ++KK LL++
Sbjct: 98  ILVVQQALTPFARQSVQEFSGKFHLEVFQEAELLVNIKEHVLVPEQQILTPEEKKTLLER 157

Query: 359 YDIQEKQL 336
           Y ++E Q+
Sbjct: 158 YTLKETQV 165

[208][TOP]
>UniRef100_Q91F72 Putative DNA-directed RNA polymerase subunit 454R n=1
           Tax=Invertebrate iridescent virus 6 RepID=454R_IIV6
          Length = 184

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
 Frame = -3

Query: 530 LIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY-- 357
           +I    IT+   K       KVEIF   DL +N+TK+ L+P    L D++ K+  KKY  
Sbjct: 75  IICDGSITTNVKKIEQTTKGKVEIFHNKDLQMNITKYHLQPLFNKLLDEEAKDFKKKYIK 134

Query: 356 -------DIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 264
                   I  +  P M ++D IAR++  Q G V+K+T
Sbjct: 135 CKIENGKKIILQSFPSMSKSDPIARFFKYQSGDVIKIT 172

[209][TOP]
>UniRef100_C7P938 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus fervens AG86
           RepID=C7P938_METFA
          Length = 78

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 23/73 (31%), Positives = 45/73 (61%)
 Frame = -3

Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258
           + VT H+L PKH+++  ++ + +LK+Y+I+ +QLP++ + D + +  G + G VV++   
Sbjct: 1   MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRIIRK 60

Query: 257 GEITQMHVTYRCV 219
                + V YR V
Sbjct: 61  SPTAGVSVAYRLV 73

[210][TOP]
>UniRef100_C5U6G3 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus infernus ME
           RepID=C5U6G3_9EURY
          Length = 78

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 26/73 (35%), Positives = 43/73 (58%)
 Frame = -3

Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258
           + VT H+L PKH++L+ ++ + LLKK  I+ +QLP++ + D + +  G + G VVK+   
Sbjct: 1   MKVTDHILVPKHEILSKEEVEELLKKLRIKIQQLPKIYEDDPVIQEIGAKEGDVVKIIRE 60

Query: 257 GEITQMHVTYRCV 219
                  V YR V
Sbjct: 61  SPTAGTFVAYRLV 73

[211][TOP]
>UniRef100_Q58443 DNA-directed RNA polymerase subunit H n=1 Tax=Methanocaldococcus
           jannaschii RepID=RPOH_METJA
          Length = 78

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 23/73 (31%), Positives = 45/73 (61%)
 Frame = -3

Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258
           + VT H+L PKH+++  ++ + +LK+Y+I+ +QLP++ + D + +  G + G VV+V   
Sbjct: 1   MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60

Query: 257 GEITQMHVTYRCV 219
                + + YR V
Sbjct: 61  SPTAGVSIAYRLV 73

[212][TOP]
>UniRef100_A4H9J0 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania
           braziliensis RepID=A4H9J0_LEIBR
          Length = 322

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 27/83 (32%), Positives = 44/83 (53%)
 Frame = -3

Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
           +++F    L  NV +H   P H  L+  +    L +  +   QLPRML++D + +Y GL 
Sbjct: 239 IQVFEEEALAFNVVRHETVPHHVALSPTEAAMFLAERKLNVSQLPRMLESDPLVQYLGLH 298

Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219
           RG +V +T  G+ +  +  YR V
Sbjct: 299 RGSIVHITREGKQSGPYSMYRHV 321

[213][TOP]
>UniRef100_O74019 DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus horikoshii
           RepID=RPOH_PYRHO
          Length = 82

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 24/72 (33%), Positives = 44/72 (61%)
 Frame = -3

Query: 434 NVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTG 255
           N+ KHVL P+H++L++++KK LL+KY I   QLP++  +D   +  G + G ++++    
Sbjct: 8   NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEIKRRS 67

Query: 254 EITQMHVTYRCV 219
               ++  YR V
Sbjct: 68  PTAGVYYYYRVV 79

[214][TOP]
>UniRef100_Q9V116 DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus abyssi
           RepID=RPOH_PYRAB
          Length = 82

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 24/72 (33%), Positives = 44/72 (61%)
 Frame = -3

Query: 434 NVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTG 255
           N+ KHVL P+H++L++++KK LL+KY I   QLP++  +D   +  G + G ++++    
Sbjct: 8   NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67

Query: 254 EITQMHVTYRCV 219
               ++  YR V
Sbjct: 68  PTAGVYYYYRVV 79