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[1][TOP] >UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR Length = 248 Score = 226 bits (577), Expect = 7e-58 Identities = 112/118 (94%), Positives = 117/118 (99%) Frame = -3 Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390 GQIVNR++LTGLILIVQNQITSQALKA+NLL+FKVEIF+ITDLLVN TKHVLKPKHQVLT Sbjct: 131 GQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQVLT 190 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW Sbjct: 191 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248 [2][TOP] >UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXN9_SOYBN Length = 237 Score = 216 bits (551), Expect = 7e-55 Identities = 104/118 (88%), Positives = 115/118 (97%) Frame = -3 Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390 GQI+NRDTLTGLILIV+N ITSQALKA+NL +FKVEIF+ITDLLVN+TKHVLKPKHQVLT Sbjct: 120 GQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLT 179 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 DKQK NLLKKY+I+EKQLPRMLQTDAIARYYGL+RGQVVKVTY+GE+TQMHVTYRCVW Sbjct: 180 DKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237 [3][TOP] >UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9ST46_RICCO Length = 238 Score = 194 bits (493), Expect = 4e-48 Identities = 90/118 (76%), Positives = 111/118 (94%) Frame = -3 Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390 GQIVN+D+LTGLIL++QNQIT+QA+KA++L FKVE+F+ITDLLVN+TKHVLKPKHQVLT Sbjct: 121 GQIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLT 180 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 D++K+ LLK Y I+EKQLPR+L+ DAIARYYGL++GQVVKVTY+GEIT+ HVTYRCVW Sbjct: 181 DREKQKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238 [4][TOP] >UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR Length = 216 Score = 183 bits (464), Expect = 9e-45 Identities = 84/117 (71%), Positives = 106/117 (90%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 QI +RD+LTGLIL++QN IT+QA+KA++L FK+EIF+ITDLLVN+TKH+LKPKHQVL++ Sbjct: 100 QITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSE 159 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 + K+ LLKKY I+EKQLPR+L+ DAI+RYYGL+RGQVVKVTY G+IT HVTYRCVW Sbjct: 160 QAKQRLLKKYSIEEKQLPRLLKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 216 [5][TOP] >UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7QJL2_VITVI Length = 229 Score = 182 bits (463), Expect = 1e-44 Identities = 87/117 (74%), Positives = 104/117 (88%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 QIVN+D+L+ LIL++QN ITSQALKA++L +F+VE F+ITDLLVN+TKHVLKPKH+VLTD Sbjct: 113 QIVNKDSLSKLILVLQNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTD 172 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 ++K LLKKY + EKQLPRMLQ DAIARYYGL++GQVVKV Y GEIT HVTYRCVW Sbjct: 173 QEKNKLLKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229 [6][TOP] >UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis thaliana RepID=Q9M1J2_ARATH Length = 222 Score = 169 bits (429), Expect = 1e-40 Identities = 77/116 (66%), Positives = 101/116 (87%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384 I++++T+TGLIL++QN +T+QALKAI L +FKVEIF+ITDLLVN+TKH LKP+HQVL D+ Sbjct: 107 ILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDE 166 Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 +K LLKK+ I+EKQLPR+ + DAI RYYGL++GQVVKV Y GE+T+ HV +RCVW Sbjct: 167 EKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222 [7][TOP] >UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1 Tax=Arabidopsis thaliana RepID=Q8L947_ARATH Length = 222 Score = 169 bits (429), Expect = 1e-40 Identities = 77/116 (66%), Positives = 101/116 (87%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384 I++++T+TGLIL++QN +T+QALKAI L +FKVEIF+ITDLLVN+TKH LKP+HQVL D+ Sbjct: 107 ILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDE 166 Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 +K LLKK+ I+EKQLPR+ + DAI RYYGL++GQVVKV Y GE+T+ HV +RCVW Sbjct: 167 EKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222 [8][TOP] >UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1 Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH Length = 218 Score = 162 bits (411), Expect = 1e-38 Identities = 74/115 (64%), Positives = 99/115 (86%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384 +++R+ +TGLIL++Q+ IT+QALKA+ L +FKVE+F ITDLLVNV+KHVL+PKHQVL DK Sbjct: 103 VLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDK 162 Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +K++LLKK+ I+EKQLPR+ D I RYYGL+ GQV+KVTY E+++ HVTYRCV Sbjct: 163 EKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217 [9][TOP] >UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA Length = 223 Score = 153 bits (386), Expect = 1e-35 Identities = 68/117 (58%), Positives = 100/117 (85%), Gaps = 1/117 (0%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384 ++ R+ LTGLIL++Q+ IT+QALKA+ L +FKVE+F++T+LLVN+TKHVL+PKH VL ++ Sbjct: 107 VLGRENLTGLILVLQSDITNQALKAVELFSFKVELFQLTELLVNITKHVLRPKHHVLNEQ 166 Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQM-HVTYRCVW 216 +K++L KK+ IQE+QLP++L+ D A+YYGL++GQVV+VTY GE ++ HV+YRC W Sbjct: 167 EKESLFKKFSIQEQQLPKLLKKDPTAKYYGLEKGQVVEVTYKGEGSESDHVSYRCAW 223 [10][TOP] >UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR Length = 233 Score = 145 bits (366), Expect = 2e-33 Identities = 67/117 (57%), Positives = 96/117 (82%) Frame = -3 Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390 GQI+N+++L GLILI+Q+++ A K + FKVE+F+ITDLLVN+TKHVL+P+ +LT Sbjct: 116 GQILNKESLHGLILILQSKMNHFAKKELEKFPFKVEVFQITDLLVNITKHVLQPQMDILT 175 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +QK+ ++ KY +++KQLPRML++DAI +YYGLQ+GQ+VK+TY+GEI VTYRCV Sbjct: 176 AEQKQQVMNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKITYSGEIVDHLVTYRCV 232 [11][TOP] >UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9RGC5_RICCO Length = 239 Score = 142 bits (358), Expect = 2e-32 Identities = 68/116 (58%), Positives = 91/116 (78%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 QI N+++L GLILI+Q+++ A K + KVEIF I+DLLVN+TKHVLKP+H+VLT Sbjct: 123 QIKNKESLNGLILILQSKMNHYARKELGQFPSKVEIFHISDLLVNITKHVLKPRHEVLTA 182 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +QK+ LL K+ ++KQLPRML TDAI+RYYG ++GQVVK+TY+G + VTYRCV Sbjct: 183 EQKQQLLNKFSSEDKQLPRMLVTDAISRYYGFEKGQVVKITYSGGLVDSLVTYRCV 238 [12][TOP] >UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein, expressed n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXY2_ORYSJ Length = 335 Score = 140 bits (352), Expect = 9e-32 Identities = 67/113 (59%), Positives = 91/113 (80%), Gaps = 1/113 (0%) Frame = -3 Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375 + L+ L+LI+Q++I S+A +AI + FKV+IF+ TDLLVN+TKHVLKPKH+VL+ QK Sbjct: 223 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 282 Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 LLK+Y++++ QLPRML+TDA+ARYYG +G VVKVTY GE+T V YRCV+ Sbjct: 283 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 335 [13][TOP] >UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ Length = 227 Score = 140 bits (352), Expect = 9e-32 Identities = 67/113 (59%), Positives = 91/113 (80%), Gaps = 1/113 (0%) Frame = -3 Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375 + L+ L+LI+Q++I S+A +AI + FKV+IF+ TDLLVN+TKHVLKPKH+VL+ QK Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174 Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 LLK+Y++++ QLPRML+TDA+ARYYG +G VVKVTY GE+T V YRCV+ Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 227 [14][TOP] >UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2RAP1_ORYSJ Length = 227 Score = 137 bits (346), Expect = 4e-31 Identities = 66/113 (58%), Positives = 90/113 (79%), Gaps = 1/113 (0%) Frame = -3 Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375 + L+ L+LI+Q++I S+A +AI + FKV+IF+ TDLLVN+TKHVLKPKH+VL+ QK Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174 Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 LLK+Y++++ QLPRML+TDA+ARYYG +G VVKV Y GE+T V YRCV+ Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227 [15][TOP] >UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=Q2HW77_MEDTR Length = 224 Score = 137 bits (346), Expect = 4e-31 Identities = 66/116 (56%), Positives = 93/116 (80%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 QIV+++ L+ LIL++Q+++TS A K + FKVEI ++ DLLVNVTKHVL+PK++VLT Sbjct: 108 QIVDKERLSRLILVMQSKMTSYARKELENCPFKVEIIQLNDLLVNVTKHVLQPKYEVLTA 167 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +K+ LL KY ++EKQLP ML+TDAIA YYGL++GQVVK++++GE+ V YRCV Sbjct: 168 NEKQKLLNKYKVEEKQLPHMLRTDAIASYYGLEKGQVVKISHSGEMFNSLVMYRCV 223 [16][TOP] >UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=A2ZBC5_ORYSI Length = 227 Score = 137 bits (346), Expect = 4e-31 Identities = 66/113 (58%), Positives = 90/113 (79%), Gaps = 1/113 (0%) Frame = -3 Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375 + L+ L+LI+Q++I S+A +AI + FKV+IF+ TDLLVN+TKHVLKPKH+VL+ QK Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174 Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 LLK+Y++++ QLPRML+TDA+ARYYG +G VVKV Y GE+T V YRCV+ Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227 [17][TOP] >UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum bicolor RepID=C5Y4H1_SORBI Length = 263 Score = 135 bits (339), Expect = 3e-30 Identities = 66/116 (56%), Positives = 90/116 (77%), Gaps = 1/116 (0%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384 V + L+ LILI+Q +I S+A +AI + +KV+ F+IT+LLVN+TKH LKPKHQVLT + Sbjct: 148 VKDENLSRLILILQGRIMSKAREAIKEIFPYKVDTFQITELLVNITKHALKPKHQVLTAE 207 Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 +K LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y E+T HVTYRC++ Sbjct: 208 EKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCIF 263 [18][TOP] >UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays RepID=B6TJI5_MAIZE Length = 264 Score = 132 bits (331), Expect = 2e-29 Identities = 65/115 (56%), Positives = 87/115 (75%), Gaps = 1/115 (0%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384 V + L+ LILI+Q +I S ++I + FKV+ F+IT+LLVN+TKHVLKPKH+VLT + Sbjct: 149 VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 208 Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 K LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y E+T HVTYRC+ Sbjct: 209 GKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 263 [19][TOP] >UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FYH9_MAIZE Length = 248 Score = 132 bits (331), Expect = 2e-29 Identities = 65/115 (56%), Positives = 87/115 (75%), Gaps = 1/115 (0%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384 V + L+ LILI+Q +I S ++I + FKV+ F+IT+LLVN+TKHVLKPKH+VLT + Sbjct: 133 VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 192 Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 K LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y E+T HVTYRC+ Sbjct: 193 GKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 247 [20][TOP] >UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI Length = 221 Score = 129 bits (325), Expect = 1e-28 Identities = 60/116 (51%), Positives = 88/116 (75%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 Q +NR+ L LIL++Q+++ S A K ++ KVE F+IT+LL+N+TKHV PKH++L+ Sbjct: 105 QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 164 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T VTYRCV Sbjct: 165 QEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 220 [21][TOP] >UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001985D3D Length = 1260 Score = 129 bits (324), Expect = 2e-28 Identities = 59/116 (50%), Positives = 88/116 (75%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 Q +NR+ L LIL++Q+++ S A K ++ KVE F+IT+LL+N+TKHV PKH++L+ Sbjct: 105 QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 164 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T VTYRC+ Sbjct: 165 QEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCI 220 [22][TOP] >UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B0H1_VITVI Length = 162 Score = 129 bits (324), Expect = 2e-28 Identities = 60/116 (51%), Positives = 88/116 (75%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 Q +NR+ L LIL++Q+++ S A K ++ KVE F+IT+LL+N+TKHV PKH++L+ Sbjct: 46 QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 105 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T VTYRCV Sbjct: 106 QEKRKLVNKYKLEDKQXPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 161 [23][TOP] >UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M1H8_ARATH Length = 233 Score = 108 bits (270), Expect = 3e-22 Identities = 52/116 (44%), Positives = 80/116 (68%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 QI N L +IL++Q+++ A KA+ F VE F I DLLVN+TKH+ +PK ++L Sbjct: 117 QISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNK 176 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++K+ LL+K+ +++KQLP + + D+ RYYGL++ QVVK+TY+ E VTYRC+ Sbjct: 177 EEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232 [24][TOP] >UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR Length = 206 Score = 106 bits (264), Expect = 1e-21 Identities = 54/107 (50%), Positives = 77/107 (71%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +T A IN ++ F +E+F+ +LLVN+ +HVL P+HQVL++++KK LL++ Sbjct: 99 ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLER 158 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V Sbjct: 159 YTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 205 [25][TOP] >UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis guineensis RepID=B3TLL2_ELAGV Length = 204 Score = 105 bits (262), Expect = 2e-21 Identities = 55/113 (48%), Positives = 81/113 (71%), Gaps = 2/113 (1%) Frame = -3 Query: 551 DTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378 + +T IL+VQ +T A +++ ++ K +E+F+ T+LLVN+ +HVL P+HQVLT ++K Sbjct: 91 ENVTRGILVVQQALTPFARQSLAEVSQKYMLEVFQDTELLVNIKEHVLVPEHQVLTSEEK 150 Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 K LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V Sbjct: 151 KTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 203 [26][TOP] >UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXZ4_SOYBN Length = 206 Score = 104 bits (260), Expect = 4e-21 Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 2/116 (1%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 +N + + IL+ Q +T A I+ ++ F +E+F+ +LLVN+ +H L P+HQVLTD Sbjct: 90 MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTD 149 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +KK LL++Y ++E QLPR+ TD +ARYYGL+RGQVVK+ E +VTYR V Sbjct: 150 AEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 205 [27][TOP] >UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SVA4_SOYBN Length = 206 Score = 104 bits (260), Expect = 4e-21 Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 2/116 (1%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 +N + + IL+ Q +T A I+ ++ F +E+F+ +LLVN+ +H L P+HQVLTD Sbjct: 90 MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTD 149 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +KK LL++Y ++E QLPR+ TD +ARYYGL+RGQVVK+ E +VTYR V Sbjct: 150 AEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 205 [28][TOP] >UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PEL2_VITVI Length = 206 Score = 104 bits (259), Expect = 5e-21 Identities = 52/107 (48%), Positives = 76/107 (71%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +T A IN ++ F +E+F+ +LLVN+ +HVL P+HQVLT ++KK LL++ Sbjct: 99 ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLER 158 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPR+ +D IARY+GL+RGQVVK+ E ++TYR V Sbjct: 159 YTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYV 205 [29][TOP] >UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis thaliana RepID=O81098_ARATH Length = 205 Score = 103 bits (256), Expect = 1e-20 Identities = 52/107 (48%), Positives = 76/107 (71%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +T A I+ ++ F +E+F+ ++LVN+ +HVL P+HQVLT ++KK LL++ Sbjct: 98 ILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPR+ TD IARY+GL+RGQVVK+ E +VTYR V Sbjct: 158 YTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYV 204 [30][TOP] >UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9RKM1_RICCO Length = 225 Score = 103 bits (256), Expect = 1e-20 Identities = 53/107 (49%), Positives = 76/107 (71%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +T A I + F +E+F+ ++LLVN+ +HVL P+HQVLT+++KK LL++ Sbjct: 118 ILVVQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLER 177 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPR+ +D IARYYGL+RGQVVK+ E +VTYR V Sbjct: 178 YTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 224 [31][TOP] >UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays RepID=B4FU06_MAIZE Length = 210 Score = 102 bits (253), Expect = 3e-20 Identities = 51/118 (43%), Positives = 81/118 (68%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393 +++ + ++ +L++Q +T A + L K+ EIF+ ++L+N+ +HVL P+HQVL Sbjct: 92 EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVPEHQVL 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T+++KK LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V Sbjct: 152 TNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209 [32][TOP] >UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FEX9_MAIZE Length = 127 Score = 102 bits (253), Expect = 3e-20 Identities = 51/118 (43%), Positives = 81/118 (68%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393 +++ + ++ +L++Q +T A + L K+ EIF+ ++L+N+ +HVL P+HQVL Sbjct: 9 EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVPEHQVL 68 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T+++KK LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V Sbjct: 69 TNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 126 [33][TOP] >UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RWG5_PHYPA Length = 208 Score = 102 bits (253), Expect = 3e-20 Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +T A + ++ + + +E+F+ +LLVN+ +HVL P H+VLT +KK LL++ Sbjct: 101 ILVVQQNLTPFARQCVSEMASKYHLEVFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLER 160 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPRM + D +ARYYGL+RGQVVK+ E +VTYR V Sbjct: 161 YTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 207 [34][TOP] >UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ Length = 210 Score = 101 bits (252), Expect = 3e-20 Identities = 51/118 (43%), Positives = 80/118 (67%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393 +++ + ++ +L++Q +T A + L K+ EIF+ +LL+N+ +HVL P+HQVL Sbjct: 92 EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLINIKEHVLVPEHQVL 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +++KK LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V Sbjct: 152 NNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209 [35][TOP] >UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XUF8_ORYSJ Length = 205 Score = 100 bits (250), Expect = 6e-20 Identities = 50/107 (46%), Positives = 75/107 (70%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +++ A A+ ++ F +E+F+ +LLVN+ H L P+H++LT +QKK LL++ Sbjct: 98 ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPR+ TD IARYYG++RGQVVK+ E +VTYR V Sbjct: 158 YTVKETQLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYV 204 [36][TOP] >UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9ETS9_ORYSJ Length = 210 Score = 100 bits (249), Expect = 8e-20 Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393 +++ + ++ +L++Q +T A + L K+ EIF+ +LL+N+ +HVL P+HQVL Sbjct: 92 EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLINIKEHVLVPEHQVL 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 + +KK LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V Sbjct: 152 NNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209 [37][TOP] >UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FGM1_MAIZE Length = 206 Score = 100 bits (248), Expect = 1e-19 Identities = 52/115 (45%), Positives = 78/115 (67%), Gaps = 2/115 (1%) Frame = -3 Query: 557 NRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDK 384 N + G IL+VQ +++ A A+ ++ K +E+F+ +LLVN+ HVL P+H +LT + Sbjct: 92 NENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLVNIKDHVLVPEHVLLTPE 150 Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 KK LL++Y ++E QLPR+ TD IARYYG++RGQVVK+T E ++TYR V Sbjct: 151 DKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKITRASETAGRYITYRYV 205 [38][TOP] >UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKG6_PHYPA Length = 208 Score = 99.8 bits (247), Expect = 1e-19 Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +T A + ++ ++ K VE+F+ +LLVN+ HVL P+H+VL ++K LL++ Sbjct: 101 ILVVQQNLTPFARQCVSEMSSKYHVEVFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQR 160 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPRM + D +ARYYGL+RGQVVK+ E +VTYR V Sbjct: 161 YTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 207 [39][TOP] >UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP Length = 216 Score = 99.8 bits (247), Expect = 1e-19 Identities = 45/115 (39%), Positives = 81/115 (70%), Gaps = 3/115 (2%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITS---QALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390 + +D I+++ ++TS QA+ +IN L+ K+E F ++L+VN+T+H L PKH++++ Sbjct: 98 IKQDGFQNSIIVLHGKLTSHAKQAINSINSLDDKIEYFSESELIVNITEHNLVPKHEIIS 157 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 +++ + L K+Y I+E QLPR+ + D IARY+GLQ+ Q++K+ + E + +VTYR Sbjct: 158 EEEARCLFKRYSIRENQLPRINKRDPIARYFGLQKNQIMKIIRSSETSGRYVTYR 212 [40][TOP] >UniRef100_C5YQI4 Putative uncharacterized protein Sb08g001130 n=1 Tax=Sorghum bicolor RepID=C5YQI4_SORBI Length = 274 Score = 99.4 bits (246), Expect = 2e-19 Identities = 44/82 (53%), Positives = 61/82 (74%) Frame = -3 Query: 461 IFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRG 282 +F + LVN+TKHVLKPKH+VLT ++K L K Y++ + LP ML++DA+A Y G ++G Sbjct: 193 LFNVRSRLVNITKHVLKPKHEVLTVEEKVKLQKDYNVVDSHLPLMLESDAVAHYQGFRQG 252 Query: 281 QVVKVTYTGEITQMHVTYRCVW 216 VVKVTY E+T HVTYRC++ Sbjct: 253 TVVKVTYDNELTGNHVTYRCIF 274 [41][TOP] >UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FSY0_PHATR Length = 228 Score = 98.6 bits (244), Expect = 3e-19 Identities = 48/111 (43%), Positives = 77/111 (69%), Gaps = 2/111 (1%) Frame = -3 Query: 551 DTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378 ++++ I+I++ IT A +A+ ++ F++E F+ ++LLV++TKH L P HQVLT +K Sbjct: 115 ESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEK 174 Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 LLK+Y +++ QLPR+ D +ARYYG++RGQVVK+ E +VTYR Sbjct: 175 NELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYR 225 [42][TOP] >UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LR68_PICSI Length = 194 Score = 98.2 bits (243), Expect = 4e-19 Identities = 48/105 (45%), Positives = 72/105 (68%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYD 354 IL+VQ + + + F +E+F+ +LLVN+ +HVL P+ Q+LT ++KK LL++Y Sbjct: 98 ILVVQQEFSGK---------FHLEVFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYT 148 Query: 353 IQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPRM ++D +ARYYGL+RGQVVK+ E +VTYR V Sbjct: 149 LKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV 193 [43][TOP] >UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum RepID=Q5DDM1_SCHJA Length = 206 Score = 97.4 bits (241), Expect = 7e-19 Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVL 393 Q+ T ++++ + +T A AI L+ K +E F +L+VN+T+H L P+H VL Sbjct: 88 QMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMVNITEHQLVPQHDVL 147 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++KK LL++Y ++E QLP+M +D +ARYYGL+RGQVV++T E ++TYR V Sbjct: 148 TQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPSETAGRYITYRIV 205 [44][TOP] >UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA Length = 208 Score = 97.4 bits (241), Expect = 7e-19 Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVL 393 Q+ T ++++ + +T A AI L+ K +E F +L+VN+T+H L P+H VL Sbjct: 90 QMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMVNITEHQLVPQHNVL 149 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++KK LL++Y ++E QLP+M +D +ARYYGL+RGQVV++T E ++TYR V Sbjct: 150 TQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPSETAGRYITYRIV 207 [45][TOP] >UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01A87_OSTTA Length = 1124 Score = 95.1 bits (235), Expect = 3e-18 Identities = 49/109 (44%), Positives = 73/109 (66%), Gaps = 4/109 (3%) Frame = -3 Query: 533 ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363 I++VQ +T Q+L F +E F+ T+LLVN+ HVL P+H +L+D+QK+ LL+ Sbjct: 1016 IIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLE 1075 Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 +Y +++ QLPR+ D IARYYG++RGQVV++ E +VTYR CV Sbjct: 1076 RYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 1124 [46][TOP] >UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO Length = 205 Score = 95.1 bits (235), Expect = 3e-18 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T+ A AI+ + +E F ++LLVN+TKH L PKH LT+ +K+NLL + Sbjct: 98 ILVTQNVLTAFARDAISEAAPRHIIENFMESELLVNITKHELVPKHVPLTNDEKQNLLNR 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPR+ D +ARY+GL RGQVVK+ E +VTYR V Sbjct: 158 YRVKEIQLPRIQSADPVARYFGLSRGQVVKIIRPSETAGRYVTYRLV 204 [47][TOP] >UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C1Q1_THAPS Length = 226 Score = 94.7 bits (234), Expect = 4e-18 Identities = 46/111 (41%), Positives = 76/111 (68%), Gaps = 2/111 (1%) Frame = -3 Query: 551 DTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378 + ++ IL+++ IT A +A+ ++ F++E F+ +LLV++T+H L P+H VL+ +K Sbjct: 113 ENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEK 172 Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 + LLK+Y ++E QLPR+ D +ARYYG++RGQVVK+ E +VTYR Sbjct: 173 QELLKRYRLRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYR 223 [48][TOP] >UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1 Tax=Theileria annulata RepID=Q4U8E3_THEAN Length = 205 Score = 94.4 bits (233), Expect = 6e-18 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T A AI K +E F T+LLVN+TKH L PKH LT ++K+NLL+K Sbjct: 98 ILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQK 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E Q+PR+ D +ARY+GL +GQVVK+ E +VT+R V Sbjct: 158 YKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLV 204 [49][TOP] >UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva RepID=Q4N141_THEPA Length = 205 Score = 94.4 bits (233), Expect = 6e-18 Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T A AI K +E F T+LLVN+TKH L PKH LT ++K+NLL+K Sbjct: 98 ILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQK 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E Q+PR+ D +ARY+GL +GQVVK+ E +VT+R V Sbjct: 158 YKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLV 204 [50][TOP] >UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE Length = 213 Score = 94.4 bits (233), Expect = 6e-18 Identities = 48/112 (42%), Positives = 77/112 (68%), Gaps = 3/112 (2%) Frame = -3 Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372 L+ IL+VQ +T+ A AI + ++E+F ++L+VN+T H L P+H+ LT ++K+ Sbjct: 102 LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTPEEKRL 161 Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 LL++Y ++E QLPR+ +D +ARYYGL++GQV+K+ E +VTYR CV Sbjct: 162 LLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213 [51][TOP] >UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JZQ6_SCHJY Length = 211 Score = 94.4 bits (233), Expect = 6e-18 Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 ILI N +T A K I+ + F +E F+ +DL+VN+T H L PKH +LT ++KK LL + Sbjct: 104 ILIYANNMTPSATKIISTVTGQFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDR 163 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y ++E QLPR+ D +ARY GL+RGQVVK+ E + + +YR Sbjct: 164 YKLRETQLPRIQMADPVARYLGLKRGQVVKIVRRSETSGRYNSYR 208 [52][TOP] >UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE Length = 213 Score = 94.0 bits (232), Expect = 7e-18 Identities = 48/112 (42%), Positives = 77/112 (68%), Gaps = 3/112 (2%) Frame = -3 Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372 L+ IL+VQ +T+ A AI + ++E+F ++L+VN+T H L P+H+ LT ++K+ Sbjct: 102 LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRL 161 Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 LL++Y ++E QLPR+ +D +ARYYGL++GQV+K+ E +VTYR CV Sbjct: 162 LLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213 [53][TOP] >UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NU15_COPC7 Length = 273 Score = 93.6 bits (231), Expect = 9e-18 Identities = 46/105 (43%), Positives = 71/105 (67%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I+I +TS A K I+ + +++E F DLLVN+T H L P+H+VL+ ++KK LL++ Sbjct: 166 IIIFPATMTSSARKVISAMASTYRLEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLER 225 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y +++ QLPR+ D +ARYYGL+RGQVVK+ E + + +YR Sbjct: 226 YRLKDTQLPRIQPMDPVARYYGLRRGQVVKIIRPSETSGRYASYR 270 [54][TOP] >UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RWP8_OSTLU Length = 205 Score = 93.2 bits (230), Expect = 1e-17 Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 4/109 (3%) Frame = -3 Query: 533 ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363 I++VQ +T Q+L F +E F+ T+LLVN+ HVL P+H +L+D QK+ LL Sbjct: 97 IIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLD 156 Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 +Y +++ QLPR+ D IARYYG++RGQVV++ E +VTYR CV Sbjct: 157 RYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 205 [55][TOP] >UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi RepID=Q4XTK3_PLACH Length = 126 Score = 93.2 bits (230), Expect = 1e-17 Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T A AI + +E F T+LLVN+TKH L PKH LT +K+NLL++ Sbjct: 19 ILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTSDEKRNLLQR 78 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y I+E +LPR+ D + RY+GL +GQVVK+ E +VTYR V Sbjct: 79 YKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLV 125 [56][TOP] >UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO Length = 204 Score = 92.8 bits (229), Expect = 2e-17 Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 4/109 (3%) Frame = -3 Query: 533 ILIVQNQITS---QALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363 I++VQ +T Q+L F +E F+ +LLVN+T HVL P+H +L+D+QK+ LL Sbjct: 96 IIVVQQSLTPFARQSLLECQAQKFYIEQFQEAELLVNITDHVLVPEHILLSDEQKRVLLD 155 Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 +Y ++E QLPR+ D +ARY+G++RGQVV++ E +VTYR CV Sbjct: 156 RYKVKETQLPRIQMHDPVARYFGMRRGQVVRIIRPSETAGRYVTYRLCV 204 [57][TOP] >UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=A3AV22_ORYSJ Length = 217 Score = 92.0 bits (227), Expect = 3e-17 Identities = 50/119 (42%), Positives = 75/119 (63%), Gaps = 14/119 (11%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +++ A A+ ++ F +E+F+ +LLVN+ H L P+H++LT +QKK LL++ Sbjct: 98 ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157 Query: 359 YDIQEKQ------------LPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E Q LPR+ TD IARYYG++RGQVVK+ E +VTYR V Sbjct: 158 YTVKETQILSLTQLVKCVNLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYV 216 [58][TOP] >UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8ID59_PLAF7 Length = 205 Score = 92.0 bits (227), Expect = 3e-17 Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T A AI + +E F T+LLVN+TKH L P+H LT +KKNLL++ Sbjct: 98 ILVTQNILTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQR 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y I E +LPR+ D + RY+GL +GQVVK+ E +VTYR V Sbjct: 158 YKIMENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLV 204 [59][TOP] >UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D9Y7_LACBS Length = 208 Score = 92.0 bits (227), Expect = 3e-17 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++ +T A K I + +++E F DLLVN+ H L P+H VL+ +KK LL+K Sbjct: 101 IIVFPGNMTPSARKVIVAMAQQYRLEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEK 160 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y ++E QLPR+ D +ARYYGL+RGQVVK+T E + + +YR Sbjct: 161 YRLKETQLPRIQLADPVARYYGLRRGQVVKITRPSETSGRYASYR 205 [60][TOP] >UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri RepID=C6K8L9_CAEBE Length = 211 Score = 91.7 bits (226), Expect = 4e-17 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + ++ I++VQ +T A ++I + + +E F +L+VN+T+H L P+H V+ Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++K LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 153 TSEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210 [61][TOP] >UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L6X3_PLAKH Length = 205 Score = 91.7 bits (226), Expect = 4e-17 Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T A AI + +E F T+LLVN+TKH L P+H LT +K+NLL++ Sbjct: 98 ILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQR 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y I+E +LPR+ D + RY+GL +GQVVK+ E +VTYR V Sbjct: 158 YKIKENKLPRIQDVDPVCRYFGLAKGQVVKIIRPSETAGRYVTYRLV 204 [62][TOP] >UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1 Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI Length = 205 Score = 91.7 bits (226), Expect = 4e-17 Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T A AI + +E F T+LLVN+TKH L P+H LT +K+NLL++ Sbjct: 98 ILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQR 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y I+E +LPR+ D + RY+GL +GQVVK+ E +VTYR V Sbjct: 158 YKIKENKLPRIQDVDPVCRYFGLAKGQVVKIIRPSETAGRYVTYRLV 204 [63][TOP] >UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MXV4_9CHLO Length = 206 Score = 91.3 bits (225), Expect = 5e-17 Identities = 47/109 (43%), Positives = 73/109 (66%), Gaps = 4/109 (3%) Frame = -3 Query: 533 ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363 I++VQ +T Q+L +F +E F+ +LLVN+T+HVL P+H +L+D +K+ LL Sbjct: 98 IIVVQASLTPFAKQSLLECASQSFYIEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLA 157 Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 +Y +++ QLPR+ D +ARYYG++RGQVV++ E +VTYR CV Sbjct: 158 RYKVKDTQLPRIQLHDPVARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 206 [64][TOP] >UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1 Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE Length = 206 Score = 91.3 bits (225), Expect = 5e-17 Identities = 45/105 (42%), Positives = 71/105 (67%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++ ++ T A A+ + + +E F ++LLVN+T+HVL P+H++L+ +K+ LL + Sbjct: 95 IMVTPSKFTPFAKSALEDMRPKYHIEHFLESELLVNITEHVLVPEHRILSPDEKRTLLDR 154 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y I+E QLPR+ +DA+ARY GLQRGQVV++ E +VTYR Sbjct: 155 YKIKETQLPRIQASDAVARYLGLQRGQVVRIVRPSETAGRYVTYR 199 [65][TOP] >UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium RepID=Q5CNJ4_CRYHO Length = 205 Score = 91.3 bits (225), Expect = 5e-17 Identities = 52/107 (48%), Positives = 68/107 (63%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 ILI QN +T+ A AI K +E F +LLVN+TKH L PKH +L+D +K LL + Sbjct: 98 ILISQNVLTAHAKVAILDAAPKHYIESFLENELLVNITKHELVPKHILLSDDEKLQLLDR 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y I+E QLPR+ D +ARY+GL +GQVVK+ E +VTYR V Sbjct: 158 YKIKETQLPRIQYADPVARYFGLAKGQVVKIIRPSETAGRYVTYRLV 204 [66][TOP] >UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia theta RepID=Q98RN7_GUITH Length = 214 Score = 90.9 bits (224), Expect = 6e-17 Identities = 41/115 (35%), Positives = 75/115 (65%), Gaps = 3/115 (2%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390 + + + +++I+ ++T QA+ +IN N +E F +L+VN+T H+L PKH++L+ Sbjct: 97 IKNEGFSRVLMILNGKLTPHAKQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILS 156 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 + K+LL++Y I+ LP++L+ D +A+Y GLQR ++VK+T E + +TYR Sbjct: 157 KNESKSLLERYSIKFDHLPKILKNDPVAKYLGLQRSEIVKITRVSETSGKFITYR 211 [67][TOP] >UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI Length = 210 Score = 90.9 bits (224), Expect = 6e-17 Identities = 46/116 (39%), Positives = 77/116 (66%), Gaps = 2/116 (1%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 + + +T I++VQ+ +T A +++ + + +E F ++LL+N+T+H L P+H V+T Sbjct: 94 MQEENITRAIILVQSGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++KK LLKKY ++E QL R+ D +ARYYGL+RGQVVK+ E +++YR V Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLV 209 [68][TOP] >UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XGH1_CAEBR Length = 211 Score = 90.9 bits (224), Expect = 6e-17 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + ++ I++VQ +T A ++I + + +E F +L+VN+T+H L P+H V+ Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++K LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210 [69][TOP] >UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE Length = 221 Score = 90.9 bits (224), Expect = 6e-17 Identities = 44/105 (41%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I+I +++ A K + + + +E F +DLLVN+TKH L PKH V+ ++K L+K+ Sbjct: 114 IIIWSEKMSPAAKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKR 173 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y ++E QLPR++ TD +A+YYGL+RGQV+K+ E ++TYR Sbjct: 174 YRLKETQLPRIMITDPVAKYYGLKRGQVMKIERASETAGRYITYR 218 [70][TOP] >UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL Length = 211 Score = 90.9 bits (224), Expect = 6e-17 Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + ++ I++VQ +T A ++I + + +E F +L+VN+T+H L P+H V+ Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++K LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210 [71][TOP] >UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH Length = 210 Score = 90.5 bits (223), Expect = 8e-17 Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++V IT+ A A++ LN +E+F +L+ N+T+H L K+ VL D+ KK LL Sbjct: 103 IVVVPMAITAPARMAVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNT 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y +Q+ QLPR+L TD +ARYYGL+RGQVVK+ + + + TYR Sbjct: 163 YTVQDTQLPRILVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYR 207 [72][TOP] >UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AE06_9CRYT Length = 205 Score = 90.5 bits (223), Expect = 8e-17 Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 ILI QN +T+ A AI K +E F +LLVN+T+H L PKH +L+D++K LL++ Sbjct: 98 ILISQNVLTAHAKVAILDAAPKHYIESFLENELLVNITRHELVPKHVLLSDEEKSQLLER 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E QLPR+ D +ARY+GL + QVVK+ E +VTYR V Sbjct: 158 YKVKETQLPRIQHADPVARYFGLAKSQVVKIIRPSETAGRYVTYRLV 204 [73][TOP] >UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caligus clemensi RepID=C1C1G9_9MAXI Length = 210 Score = 90.1 bits (222), Expect = 1e-16 Identities = 46/116 (39%), Positives = 76/116 (65%), Gaps = 2/116 (1%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 + + +T I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T Sbjct: 94 MQEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++KK LLKKY ++E QL R+ D +ARYYGL+RGQVVK+ E +++YR V Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLV 209 [74][TOP] >UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus RepID=Q6MY78_ASPFU Length = 220 Score = 90.1 bits (222), Expect = 1e-16 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 + I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KKNLL++Y Sbjct: 114 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 173 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 174 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 219 [75][TOP] >UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus RepID=B0XMP1_ASPFC Length = 171 Score = 90.1 bits (222), Expect = 1e-16 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 + I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KKNLL++Y Sbjct: 65 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 124 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 125 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 170 [76][TOP] >UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL Length = 179 Score = 90.1 bits (222), Expect = 1e-16 Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I QN IT A K I + +E F+ TDL+VN+T H L PKH L ++KK LL++Y Sbjct: 73 IFIYQNSITPSANKLIPTVQPASIETFQETDLIVNITHHELVPKHIKLNREEKKELLERY 132 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +ARY GL+RG+VVK+ E + + +YR Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176 [77][TOP] >UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D205_NEOFI Length = 234 Score = 90.1 bits (222), Expect = 1e-16 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 + I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KKNLL++Y Sbjct: 128 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 188 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233 [78][TOP] >UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus RepID=A1CP51_ASPCL Length = 234 Score = 90.1 bits (222), Expect = 1e-16 Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 + I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KKNLL++Y Sbjct: 128 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 188 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233 [79][TOP] >UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Eremothecium gossypii RepID=RPAB1_ASHGO Length = 215 Score = 89.7 bits (221), Expect = 1e-16 Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I QN IT ALK + ++ +E F T L+VN+T H L PKH L+D++KK LLK+Y Sbjct: 109 IFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 [80][TOP] >UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1 Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA Length = 202 Score = 89.4 bits (220), Expect = 2e-16 Identities = 36/84 (42%), Positives = 63/84 (75%) Frame = -3 Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288 +E F ++++N+T+H L PKH+VLT+ +K+ +LK+Y++ E QLPR+L+TD ++RY G++ Sbjct: 119 IEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVK 178 Query: 287 RGQVVKVTYTGEITQMHVTYRCVW 216 GQ++K+T + +VTYR V+ Sbjct: 179 PGQLLKITRNSDTAGHYVTYRLVY 202 [81][TOP] >UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG Length = 214 Score = 89.4 bits (220), Expect = 2e-16 Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 1/115 (0%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLT 390 +I ++ TG I I QN IT A K I ++ + E F+ +DL+VN+T H L PKH L+ Sbjct: 98 RIQEKNFSTG-IFIYQNNITPSANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLS 156 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 D +K LL++Y ++E QLPR+ + D +ARY GL+RGQVVK+ E + + +YR Sbjct: 157 DGEKSQLLQRYKLKESQLPRIQREDPVARYLGLKRGQVVKIIRRSETSGRYASYR 211 [82][TOP] >UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC Length = 214 Score = 89.4 bits (220), Expect = 2e-16 Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 I ++ TG I I QN +T A K I ++ +EIF+ DL+VN+T H L PKH L Sbjct: 99 ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNH 157 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+ E + + +YR Sbjct: 158 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211 [83][TOP] >UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Yarrowia lipolytica RepID=RPAB1_YARLI Length = 212 Score = 89.4 bits (220), Expect = 2e-16 Identities = 45/104 (43%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 IL+ +N +T A + I ++ ++ F+ TDLLVN+TKHVL P H L+ +KK LL++Y Sbjct: 106 ILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERY 165 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +ARY GL+RGQ+VK+ E + + +YR Sbjct: 166 RLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209 [84][TOP] >UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans RepID=Q59PF3_CANAL Length = 179 Score = 89.0 bits (219), Expect = 2e-16 Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 I ++ TG I I QN +T A K I ++ +EIF+ DL+VN+T H L PKH L Sbjct: 64 ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNR 122 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+ E + + +YR Sbjct: 123 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 176 [85][TOP] >UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MBX4_CANTT Length = 214 Score = 89.0 bits (219), Expect = 2e-16 Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 1/114 (0%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTD 387 I ++ TGL I QN IT A K I ++ V EIF+ +DL+VN+T H L PKH L+ Sbjct: 99 ITEKNFSTGLF-IYQNSITPSANKLIPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSK 157 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 +K LL++Y ++E QLPR+ + D +ARY GL+RG+VVK+ E + + +YR Sbjct: 158 DEKVELLERYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211 [86][TOP] >UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida albicans RepID=C4YG42_CANAL Length = 214 Score = 89.0 bits (219), Expect = 2e-16 Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 I ++ TG I I QN +T A K I ++ +EIF+ DL+VN+T H L PKH L Sbjct: 99 ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNR 157 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+ E + + +YR Sbjct: 158 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211 [87][TOP] >UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7APR4_BABBO Length = 205 Score = 88.6 bits (218), Expect = 3e-16 Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 2/108 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T A AI + +E F T+LLVN+TKH L PKH LT +K+ LL++ Sbjct: 98 ILVTQNVLTPFAKDAILEAAPRNIIENFLETELLVNITKHELVPKHIPLTADEKQTLLQR 157 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 Y ++E Q+PR+ D +ARY+GL +GQVVK+ E +VT+R V+ Sbjct: 158 YKVKESQIPRIQAADPVARYFGLTKGQVVKIIRPSETAGRYVTFRLVY 205 [88][TOP] >UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4QW70_MAGGR Length = 259 Score = 88.6 bits (218), Expect = 3e-16 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 3/106 (2%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNF---KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363 IL+ Q ++S A +A++ KVE F + DLLVN+T H L PKH +L+ +KK LL+ Sbjct: 122 ILVTQGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLE 181 Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 +Y ++E QLPR+ D +ARY GLQRG VVK+ E + +YR Sbjct: 182 RYRLKETQLPRIQTKDPVARYLGLQRGNVVKIIRHSETAGRYASYR 227 [89][TOP] >UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO Length = 210 Score = 88.6 bits (218), Expect = 3e-16 Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 ILI N +T A K I + F +E F+ +DL+VN+T H L PKH +L+ +KK LL + Sbjct: 103 ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y ++E QLPR+ D +ARY GL+RG+VVK+ E + + +YR Sbjct: 163 YKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYR 207 [90][TOP] >UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona intestinalis RepID=UPI000180C3C9 Length = 210 Score = 88.2 bits (217), Expect = 4e-16 Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + + I++VQ +T A +++ + + +E F +LL+N+T+H L P+H VL Sbjct: 92 QRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPKYILEQFLEQELLINITEHELVPEHVVL 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++K LL +Y +++ QLPR+ D +ARY+GL+RGQVVK+ E +VTYR V Sbjct: 152 TPEEKSELLTRYKLKDHQLPRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYVTYRLV 209 [91][TOP] >UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative n=1 Tax=Entamoeba dispar SAW760 RepID=B0EA74_ENTDI Length = 204 Score = 88.2 bits (217), Expect = 4e-16 Identities = 40/77 (51%), Positives = 57/77 (74%) Frame = -3 Query: 446 DLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKV 267 +L+VNVT HVL P+H +L+ ++K+ LLKKY ++E QLPR+L +D I++YYG QRG VVK+ Sbjct: 128 ELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187 Query: 266 TYTGEITQMHVTYRCVW 216 E +VTYR V+ Sbjct: 188 IRKSETAGRYVTYRAVF 204 [92][TOP] >UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4LW54_ENTHI Length = 204 Score = 87.8 bits (216), Expect = 5e-16 Identities = 39/77 (50%), Positives = 57/77 (74%) Frame = -3 Query: 446 DLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKV 267 +L+VNVT H+L P+H +L+ ++K+ LLKKY ++E QLPR+L +D I++YYG QRG VVK+ Sbjct: 128 ELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187 Query: 266 TYTGEITQMHVTYRCVW 216 E +VTYR V+ Sbjct: 188 IRKSETAGRYVTYRAVF 204 [93][TOP] >UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S3Q9_TRIAD Length = 210 Score = 87.8 bits (216), Expect = 5e-16 Identities = 43/118 (36%), Positives = 76/118 (64%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + R+ + I+I+Q+ +T A +++ + + +E F ++L++N+T+H L PKH V+ Sbjct: 92 QRMQRENINRAIIIIQSGMTPTAKQSLIDMAPKYTLESFMESELMINITEHHLVPKHIVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 + ++K LL +Y ++E QLPR+ D +ARYYGL+RGQ V++ E ++TYR V Sbjct: 152 SPEEKAELLARYKLKEHQLPRIQVGDPVARYYGLKRGQFVRIIRPSETAGRYITYRLV 209 [94][TOP] >UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR Length = 234 Score = 87.8 bits (216), Expect = 5e-16 Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 3/108 (2%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I I +++QA K +++ + +VE F DLLVN+T H L PKH +L+ ++K LLK+ Sbjct: 127 IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKR 186 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 Y ++E QLPR+L D IARY GL+RGQVVK+ E + +YR CV Sbjct: 187 YRLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234 [95][TOP] >UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4 RepID=UPI00004E3EE0 Length = 181 Score = 87.4 bits (215), Expect = 7e-16 Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 5/110 (4%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN----FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLL 366 I++VQ IT A +A+ + +E F +LLVN+T H L PKH +LT ++K LL Sbjct: 72 IIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELL 131 Query: 365 KKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 +Y ++E QLPR+ D +ARYYGL RG VVK+ E ++TYR CV Sbjct: 132 TRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 181 [96][TOP] >UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H038_CHAGB Length = 220 Score = 87.4 bits (215), Expect = 7e-16 Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 3/108 (2%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ +++QA K + + + +E F DLLVN+T H L PKH +L+ ++K LLK+ Sbjct: 113 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKR 172 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 Y ++E QLPR+L D IARY GL++GQVVK+ T E + +YR CV Sbjct: 173 YRLKETQLPRILSKDPIARYLGLKKGQVVKIIRTSETAGRYASYRLCV 220 [97][TOP] >UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1 Tax=Dictyostelium discoideum RepID=RPAB1_DICDI Length = 197 Score = 87.4 bits (215), Expect = 7e-16 Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 5/110 (4%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN----FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLL 366 I++VQ IT A +A+ + +E F +LLVN+T H L PKH +LT ++K LL Sbjct: 88 IIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELL 147 Query: 365 KKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 +Y ++E QLPR+ D +ARYYGL RG VVK+ E ++TYR CV Sbjct: 148 TRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 197 [98][TOP] >UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri RepID=A6N9W6_ORNPR Length = 210 Score = 87.0 bits (214), Expect = 9e-16 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T I++VQ +T A +A+ + + +E F ++LL+N+T+H L P+H VL Sbjct: 92 QRMQEENITRAIIVVQQGMTPSAKQALTDMAPKYILEYFLESELLINITEHELVPEHVVL 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++K LL +Y ++E L R+ D +ARY+GL+RGQVVK+ E +++YR V Sbjct: 152 TPEEKAELLARYKLKENHLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [99][TOP] >UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN Length = 219 Score = 87.0 bits (214), Expect = 9e-16 Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KK LL +Y Sbjct: 113 IFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRY 172 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 173 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 218 [100][TOP] >UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z7I7_NECH7 Length = 234 Score = 86.7 bits (213), Expect = 1e-15 Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%) Frame = -3 Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291 K+E F DLLVN+T H L PKH +L+ +K LLK+Y ++E QLPR+LQ D +ARY GL Sbjct: 150 KIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYRLKETQLPRILQRDPVARYLGL 209 Query: 290 QRGQVVKVTYTGEITQMHVTYR-CV 219 +RGQVVK+ E + +YR CV Sbjct: 210 KRGQVVKIIRNSETAGRYASYRLCV 234 [101][TOP] >UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VUN9_PYRTR Length = 235 Score = 86.3 bits (212), Expect = 2e-15 Identities = 40/83 (48%), Positives = 59/83 (71%) Frame = -3 Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288 VE+F DLLVN+TKH L PKH +L+D++K+ LL++Y +++ QLPR+ TD +A+Y GL+ Sbjct: 152 VEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLR 211 Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219 RG VVK+ E + +YR V Sbjct: 212 RGSVVKIIRKSETAGRYASYRWV 234 [102][TOP] >UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST Length = 213 Score = 86.3 bits (212), Expect = 2e-15 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I QN IT A K I ++ +E F+ DL+VN+T H L PKH L+ +KK LL +Y Sbjct: 107 IFIYQNSITPSANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRY 166 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +ARY GL+RG+VVK+ E + + +YR Sbjct: 167 RLKESQLPRVQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 210 [103][TOP] >UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E78B Length = 210 Score = 85.9 bits (211), Expect = 2e-15 Identities = 42/118 (35%), Positives = 77/118 (65%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + + I++VQ +T A ++++ + + +E F ++LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPKYILEQFLESELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++K+ LL++Y ++E QL R+ D +ARY+GL+RGQVVK+ E +++YR V Sbjct: 152 TPEEKQELLQRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYISYRLV 209 [104][TOP] >UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio RepID=UPI000056951D Length = 211 Score = 85.9 bits (211), Expect = 2e-15 Identities = 43/118 (36%), Positives = 75/118 (63%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 93 QRMQEENITRAVIVVQTGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 152 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ +D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 153 TKEEVTELLARYKLKETQLPRIQCSDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 210 [105][TOP] >UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Rana catesbeiana RepID=C1C3Q7_RANCA Length = 210 Score = 85.9 bits (211), Expect = 2e-15 Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T + LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [106][TOP] >UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus mordax RepID=C1BIS3_OSMMO Length = 210 Score = 85.9 bits (211), Expect = 2e-15 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 TKEELSELLTRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [107][TOP] >UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2 Tax=Euteleostei RepID=B5X957_SALSA Length = 210 Score = 85.9 bits (211), Expect = 2e-15 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T ++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ Q D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 TKEELSELLLRYKLKESQLPRIQQGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [108][TOP] >UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI Length = 210 Score = 85.9 bits (211), Expect = 2e-15 Identities = 44/118 (37%), Positives = 76/118 (64%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + +T+T I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H VL Sbjct: 92 QRMQEETITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T +K+ LL +Y ++E QL R+ D ++RY+GL+RGQVVK+ E +++YR V Sbjct: 152 TPDEKQELLCRYKLKENQLMRIQVGDPVSRYFGLKRGQVVKIVRNSETAGRYISYRLV 209 [109][TOP] >UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE Length = 224 Score = 85.9 bits (211), Expect = 2e-15 Identities = 41/87 (47%), Positives = 59/87 (67%) Frame = -3 Query: 485 NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 306 ++ + E+F DL+ +VTKH L P+H +L DK+K+ LLKKY + + QLPR+LQ+D IA Sbjct: 135 SIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPRILQSDPIA 194 Query: 305 RYYGLQRGQVVKVTYTGEITQMHVTYR 225 R+ GL G VVK+ E ++VTYR Sbjct: 195 RFLGLHHGDVVKIIRKSETAGLYVTYR 221 [110][TOP] >UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina RepID=B2AZ24_PODAN Length = 235 Score = 85.9 bits (211), Expect = 2e-15 Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 3/108 (2%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ +++QA K + + + +E F DLLVN+T H L P H +L+ ++K LLK+ Sbjct: 128 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKR 187 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 Y ++E QLPR+LQ D IARY GL+RGQVVK+ E + +YR CV Sbjct: 188 YRLKETQLPRILQKDPIARYLGLKRGQVVKIVRISETAGRYASYRLCV 235 [111][TOP] >UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia guilliermondii RepID=A5DHL4_PICGU Length = 179 Score = 85.9 bits (211), Expect = 2e-15 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I QN IT A K + + +E F+ +DL+VN+T H L PKH L+ +KK LL +Y Sbjct: 73 IFIYQNSITPSANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIKLSIGEKKELLARY 132 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +ARY GL+RG+VVK+ E + + +YR Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176 [112][TOP] >UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio rerio RepID=Q6DEG5_DANRE Length = 210 Score = 85.5 bits (210), Expect = 3e-15 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [113][TOP] >UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG Length = 210 Score = 85.5 bits (210), Expect = 3e-15 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [114][TOP] >UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZQF0_BRAFL Length = 210 Score = 85.5 bits (210), Expect = 3e-15 Identities = 43/116 (37%), Positives = 75/116 (64%), Gaps = 2/116 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + ++ I++VQ +T A +A+ + + +E F ++LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENISRAIIVVQMGMTPSAKQALVDMAPKYILEQFLESELLINITEHQLVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 T ++K LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E +++YR Sbjct: 152 TPEEKAELLARYRLKEHQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYR 207 [115][TOP] >UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4 Length = 287 Score = 85.5 bits (210), Expect = 3e-15 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q IT A K I ++ +E+F+ +DL+VN+T H L PKH L+ +KK LL +Y Sbjct: 181 IFIYQTSITPSANKLIPTVSPATIEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRY 240 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +ARY GL+RG VVK+ E + + +YR Sbjct: 241 RLKESQLPRIQREDPVARYLGLKRGDVVKIIRRSETSGRYASYR 284 [116][TOP] >UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) = Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QAL5_ASPNC Length = 235 Score = 85.5 bits (210), Expect = 3e-15 Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 + I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ +K LL++Y Sbjct: 129 VFITQTPISPSAVRLLSSMPGRICEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLERY 188 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 189 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYRWV 234 [117][TOP] >UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3 Tax=Murinae RepID=RPAB1_MOUSE Length = 210 Score = 85.5 bits (210), Expect = 3e-15 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209 [118][TOP] >UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa n=1 Tax=Pan troglodytes RepID=UPI0000E24E5A Length = 230 Score = 85.1 bits (209), Expect = 3e-15 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 112 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 171 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V Sbjct: 172 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 229 [119][TOP] >UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2 Tax=Neognathae RepID=B5FX59_TAEGU Length = 210 Score = 85.1 bits (209), Expect = 3e-15 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209 [120][TOP] >UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus RepID=Q28HF5_XENTR Length = 210 Score = 85.1 bits (209), Expect = 3e-15 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T + LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [121][TOP] >UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE Length = 207 Score = 85.1 bits (209), Expect = 3e-15 Identities = 42/118 (35%), Positives = 75/118 (63%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + ++ +++VQ +T A +A+ + + +E F +L++N+T+H L P+H ++ Sbjct: 89 QRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILEQFVEAELMINITEHELVPEHVLM 148 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T +K+ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 149 TPDEKQELLLRYKLKEHQLPRIQSGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 206 [122][TOP] >UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE Length = 223 Score = 85.1 bits (209), Expect = 3e-15 Identities = 40/87 (45%), Positives = 59/87 (67%) Frame = -3 Query: 485 NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 306 ++ + E+F DL+ +VTKH L P+H +L D++K+ LLKKY + + QLPR+LQ+D IA Sbjct: 134 SIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGLVDNQLPRILQSDPIA 193 Query: 305 RYYGLQRGQVVKVTYTGEITQMHVTYR 225 R+ GL G VVK+ E ++VTYR Sbjct: 194 RFLGLHHGDVVKIIRKSETAGLYVTYR 220 [123][TOP] >UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DNB3_LACTC Length = 215 Score = 85.1 bits (209), Expect = 3e-15 Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I + QN +T A+K + ++ +E F L+VN+T H L PKH L+D++KK LL++Y Sbjct: 109 IFVYQNGVTPSAMKLLPSVAPATIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRY 168 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +A Y GL+RG VVK+ E + + +YR Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGDVVKIIRKSETSGRYASYR 212 [124][TOP] >UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HAG0_PENCW Length = 234 Score = 85.1 bits (209), Expect = 3e-15 Identities = 44/106 (41%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++K LL++Y Sbjct: 128 IFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERY 187 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 188 RLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233 [125][TOP] >UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEH4_VANPO Length = 215 Score = 85.1 bits (209), Expect = 3e-15 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I + Q +T A+K + ++ +E F L+VN+T H L PKH L++ +KK LLKKY Sbjct: 109 IFVYQTNVTPSAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKY 168 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 [126][TOP] >UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Pongo abelii RepID=RPAB1_PONAB Length = 210 Score = 85.1 bits (209), Expect = 3e-15 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209 [127][TOP] >UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Homo sapiens RepID=RPAB1_HUMAN Length = 210 Score = 85.1 bits (209), Expect = 3e-15 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209 [128][TOP] >UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Bos taurus RepID=RPAB1_BOVIN Length = 210 Score = 85.1 bits (209), Expect = 3e-15 Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209 [129][TOP] >UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023E584 Length = 253 Score = 84.7 bits (208), Expect = 4e-15 Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 2/115 (1%) Frame = -3 Query: 563 IVNRDTLTGLIL--IVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390 +++ + TG+++ + + ++L ++ L K+E F DLLVN+T H L PKH +L+ Sbjct: 122 VISNNYKTGIMITHVPLSPAARRSLASVESLA-KIECFLEDDLLVNITHHELVPKHVLLS 180 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++K LLK+Y ++E QLPR+LQ D +ARY GL+RG VVK+ E + +YR Sbjct: 181 REEKIALLKRYRLKETQLPRILQKDPVARYLGLKRGHVVKIIRNSETAGRYASYR 235 [130][TOP] >UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2 Tax=Emericella nidulans RepID=C8VQY1_EMENI Length = 235 Score = 84.7 bits (208), Expect = 4e-15 Identities = 43/106 (40%), Positives = 70/106 (66%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I + I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++K LL++Y Sbjct: 129 IFITKTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRY 188 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 189 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 234 [131][TOP] >UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces dermatitidis RepID=C5G7M7_AJEDR Length = 236 Score = 84.7 bits (208), Expect = 4e-15 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y Sbjct: 130 IFISQTPISPSAIRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235 [132][TOP] >UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VBP1_NOSCE Length = 204 Score = 84.7 bits (208), Expect = 4e-15 Identities = 36/106 (33%), Positives = 68/106 (64%) Frame = -3 Query: 536 LILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 LIL++ +++S + +N+ + K+EIF+ +L+ N+TKHV P+H++L D +K ++L+K Sbjct: 91 LILVINQKMSSASQNIVNVSDLKIEIFKDEELMFNITKHVSVPRHRILNDTEKNSILEKL 150 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 I Q+P++L+ D + R+ G + GQVV++T + Y+ V Sbjct: 151 KITVDQMPKILKRDPVCRFLGAESGQVVEITRKSRTAGESIFYKVV 196 [133][TOP] >UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357 RepID=B8N6W2_ASPFN Length = 171 Score = 84.7 bits (208), Expect = 4e-15 Identities = 44/116 (37%), Positives = 73/116 (62%), Gaps = 1/116 (0%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTD 387 +V+ + + I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ Sbjct: 55 VVDENNFHTGVFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSP 114 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++K LL +Y ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 115 EEKAKLLARYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYRWV 170 [134][TOP] >UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QBA8_PENMQ Length = 172 Score = 84.7 bits (208), Expect = 4e-15 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I + I+ A++ +N + E F+ +DLLVN+T H L PKH +L+ ++K LL++Y Sbjct: 66 IFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 125 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 126 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 171 [135][TOP] >UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QBA7_PENMQ Length = 236 Score = 84.7 bits (208), Expect = 4e-15 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I + I+ A++ +N + E F+ +DLLVN+T H L PKH +L+ ++K LL++Y Sbjct: 130 IFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 189 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 190 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 235 [136][TOP] >UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587A08 Length = 210 Score = 84.3 bits (207), Expect = 6e-15 Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T I+ VQ ++T A ++ + + +E F +LL+N+T+H P+H V+ Sbjct: 92 QRMQEENITRAIITVQEKMTPSAKTSLGDMAPKYILEQFLEAELLINITEHDFVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++K LL +Y +++ QLPR+ D +ARY+GL+RGQVVK+ E +++YR V Sbjct: 152 TGEEKAELLARYKLKDHQLPRIQVGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [137][TOP] >UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens RepID=B4DJ89_HUMAN Length = 117 Score = 84.3 bits (207), Expect = 6e-15 Identities = 41/116 (35%), Positives = 73/116 (62%), Gaps = 2/116 (1%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+T Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V Sbjct: 61 EEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 116 [138][TOP] >UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1GUJ0_PARBA Length = 236 Score = 84.3 bits (207), Expect = 6e-15 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y Sbjct: 130 IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235 [139][TOP] >UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1FYH2_PARBD Length = 236 Score = 84.3 bits (207), Expect = 6e-15 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y Sbjct: 130 IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235 [140][TOP] >UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0S407_PARBP Length = 171 Score = 84.3 bits (207), Expect = 6e-15 Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y Sbjct: 65 IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 124 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 125 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 170 [141][TOP] >UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus RepID=C0NL28_AJECG Length = 236 Score = 84.3 bits (207), Expect = 6e-15 Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I + Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y Sbjct: 130 IFVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYRWV 235 [142][TOP] >UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN Length = 236 Score = 84.3 bits (207), Expect = 6e-15 Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I + Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y Sbjct: 130 IFVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYRWV 235 [143][TOP] >UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5DLP1_DROPS Length = 320 Score = 84.0 bits (206), Expect = 7e-15 Identities = 43/105 (40%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+V++ +T A ++I + + +E F ++L +NVTKH L P+H VL++ +KK L + Sbjct: 103 ILVVRDCLTPPAKQSIMAMAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRC 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y ++E Q+ RML +D +ARYYGL+ GQVVK+ E +++YR Sbjct: 163 YRLKESQMMRMLSSDPVARYYGLKPGQVVKIVRASESAGKYISYR 207 [144][TOP] >UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia vitripennis RepID=UPI00015B5456 Length = 210 Score = 83.6 bits (205), Expect = 1e-14 Identities = 43/118 (36%), Positives = 75/118 (63%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + + I++VQ+ +T A +++ + + +E F ++LL+N+T+H L P+H VL Sbjct: 92 QRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T +K+ LL +Y ++E QL R+ D +ARY+GL+RGQVVK+ E +++YR V Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQANDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [145][TOP] >UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Anoplopoma fimbria RepID=C3KI95_9PERC Length = 210 Score = 83.6 bits (205), Expect = 1e-14 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 + ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 SKEEVVELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [146][TOP] >UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Esox lucius RepID=C1BZT4_ESOLU Length = 210 Score = 83.6 bits (205), Expect = 1e-14 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T ++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [147][TOP] >UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Salmo salar RepID=B5X8S7_SALSA Length = 210 Score = 83.6 bits (205), Expect = 1e-14 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T ++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [148][TOP] >UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum canis CBS 113480 RepID=C5FC74_NANOT Length = 236 Score = 83.2 bits (204), Expect = 1e-14 Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 1/117 (0%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLT 390 Q +++ I I Q+ I+ A++ + + + E F +LLVN+T H L PKH +L+ Sbjct: 119 QFIDQQNYHAGIFITQSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLS 178 Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++KK LL++Y ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 179 AEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235 [149][TOP] >UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5 Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST Length = 215 Score = 83.2 bits (204), Expect = 1e-14 Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I + QN IT A+K + ++ +E F L+VN+T H L PKH L+ +K+ LLK+Y Sbjct: 109 IFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 [150][TOP] >UniRef100_A2DEU9 RNA polymerase Rpb5, C-terminal domain containing protein n=1 Tax=Trichomonas vaginalis G3 RepID=A2DEU9_TRIVA Length = 217 Score = 82.8 bits (203), Expect = 2e-14 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 4/113 (3%) Frame = -3 Query: 545 LTGLILIVQN----QITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378 +T LIL+ Q I + K + L+ K+E F + +L N+T H PKH+VL++++K Sbjct: 104 ITHLILVHQEGSLAHIFDRIKKQLRLIGKKLETFTLQELQYNITMHFFVPKHKVLSNEEK 163 Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 L +Y I E +LP++L TD + RYYG G ++++T E VTYR V Sbjct: 164 NELFNRYKIDETKLPQILSTDPVVRYYGADPGAIIEITRRSETCGRVVTYRLV 216 [151][TOP] >UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DR69_ZYGRC Length = 215 Score = 82.8 bits (203), Expect = 2e-14 Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I + QN +T A+K + ++ +E F L+VN+T H L PKH ++ +K+ LLK+Y Sbjct: 109 IFVYQNNVTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRY 168 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 [152][TOP] >UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8M3B9_TALSN Length = 236 Score = 82.8 bits (203), Expect = 2e-14 Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I + I+ A++ ++ + E F+ +DLLVN+T H L PKH +L+ ++K LL++Y Sbjct: 130 IFITRTAISPSAMRLLSSAVGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 189 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V Sbjct: 190 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 235 [153][TOP] >UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA Length = 214 Score = 82.8 bits (203), Expect = 2e-14 Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q+ IT A K I ++ +E F+ DL+VN+T H L PKH L +KK LL++Y Sbjct: 108 IFIYQSSITPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERY 167 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D + RY GL+RG+VVK+ E + + +YR Sbjct: 168 RLKESQLPRIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211 [154][TOP] >UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Candida glabrata RepID=RPAB1_CANGA Length = 215 Score = 82.8 bits (203), Expect = 2e-14 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I QN IT A+K + ++ +E F L+VN+T H L PKH L +++K LLK+Y Sbjct: 109 IFIYQNNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRY 168 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++E QLPR+ + D +A Y GL+RG+VVK+ E + +YR Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212 [155][TOP] >UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera RepID=UPI00003C0CAC Length = 210 Score = 82.4 bits (202), Expect = 2e-14 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + + I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H VL Sbjct: 92 QRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T +K+ LL +Y ++E QL R+ D +ARY+GL+RGQVVK+ E +++YR V Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [156][TOP] >UniRef100_Q24FV0 RNA polymerase Rpb5, C-terminal domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q24FV0_TETTH Length = 275 Score = 82.4 bits (202), Expect = 2e-14 Identities = 39/85 (45%), Positives = 54/85 (63%) Frame = -3 Query: 473 FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYG 294 +K EIF DL++N+TKH L PKH L +KK L+ KY I + QLP++L TD I +Y+G Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFG 249 Query: 293 LQRGQVVKVTYTGEITQMHVTYRCV 219 L+ QV K+ E ++TYR V Sbjct: 250 LRTKQVFKIERDSETAGKYITYRIV 274 [157][TOP] >UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S900_9PEZI Length = 231 Score = 82.4 bits (202), Expect = 2e-14 Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 2/105 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAI-NLLNF-KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++ + +TS K + +L +F ++E F DLLVN+T H L PKH +L+ +K LLK+ Sbjct: 124 IMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKR 183 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 Y ++E QLPR+ + D +ARY GL+RG VVK+ E + +YR Sbjct: 184 YRLKETQLPRIKREDPVARYLGLKRGNVVKIIRNSETAGRYASYR 228 [158][TOP] >UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LUR5_ARATH Length = 178 Score = 81.6 bits (200), Expect = 4e-14 Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 4/114 (3%) Frame = -3 Query: 548 TLTGLILIVQN--QITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQ 381 T+ IL+VQ+ + QAL + + F +E+F+ +L+VNV +HV P+HQ LT ++ Sbjct: 64 TMIRAILVVQDIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEE 123 Query: 380 KKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 K+ L++ + LPR+ TD IARY+GL+RG+VVK++ E + ++TYR V Sbjct: 124 KQKFLERKRTRFVVLPRIHVTDPIARYFGLKRGEVVKISRLSETSGRYITYRYV 177 [159][TOP] >UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0UZB4_PHANO Length = 277 Score = 81.3 bits (199), Expect = 5e-14 Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 7/112 (6%) Frame = -3 Query: 533 ILIVQNQITSQALK----AINLLNFK---VEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375 I++ IT A++ A NL + +E+F DLLVN+TKH L PKH +L+ ++K Sbjct: 165 IMVTVKPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKA 224 Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 LL +Y ++E QLPR+ TD +A++ GL+RG VVK+ E + +YR V Sbjct: 225 QLLTRYRLKETQLPRIQSTDPVAKFLGLRRGSVVKIIRKSETAGRYASYRWV 276 [160][TOP] >UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RKX0_PLAYO Length = 112 Score = 80.9 bits (198), Expect = 6e-14 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+ QN +T A AI + +E F T+LLVN+TKH L PKH LT +K+NLL++ Sbjct: 19 ILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTSDEKRNLLQR 78 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVK 270 Y I+E +LPR+ D + RY+GL +GQV K Sbjct: 79 YKIKENKLPRIQDVDPVCRYFGLSKGQVQK 108 [161][TOP] >UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN Length = 210 Score = 80.9 bits (198), Expect = 6e-14 Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL + Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [162][TOP] >UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA Length = 215 Score = 80.9 bits (198), Expect = 6e-14 Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 1/114 (0%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 I ++ TG I I Q+ IT A K + +E F L+VN+T H L PKH L+D Sbjct: 100 ITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSD 158 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 +KK LLK+Y ++E QLPR+ + D +A Y GL+RG+V+K+ E + + +YR Sbjct: 159 AEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212 [163][TOP] >UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D56A05 Length = 210 Score = 80.5 bits (197), Expect = 8e-14 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL + Sbjct: 103 IIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E L R+ D +ARY+GL+RGQVVK+ E +++YR V Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [164][TOP] >UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS Length = 210 Score = 80.5 bits (197), Expect = 8e-14 Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL + Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [165][TOP] >UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME Length = 210 Score = 80.5 bits (197), Expect = 8e-14 Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL + Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [166][TOP] >UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE Length = 210 Score = 80.5 bits (197), Expect = 8e-14 Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 5/116 (4%) Frame = -3 Query: 551 DTLTGLILIVQNQITSQALKAINLL-----NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 D L I++ Q ++ A I++L + VE F +L+ NVT+H L P H++L + Sbjct: 91 DNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVETFAEAELVYNVTRHHLVPHHEILKE 150 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +K+ LL++Y + E +LP++ D + RY+G Q+GQV+++ + + +VTYR V Sbjct: 151 SEKQQLLERYCVSEDRLPQIQPNDPVCRYFGAQKGQVLRIVRSSQTAGRYVTYRIV 206 [167][TOP] >UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI Length = 210 Score = 80.1 bits (196), Expect = 1e-13 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL + Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E L R+ D +ARY+GL+RGQVVK+ E +++YR V Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRASETAGRYISYRLV 209 [168][TOP] >UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO Length = 210 Score = 80.1 bits (196), Expect = 1e-13 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T + K+ LL + Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [169][TOP] >UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR Length = 210 Score = 80.1 bits (196), Expect = 1e-13 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T + K+ LL + Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [170][TOP] >UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides RepID=C5PAC2_COCP7 Length = 236 Score = 80.1 bits (196), Expect = 1e-13 Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q+ I+ A++ + + + E F +LLVN+T H L PKH +L+ ++KK LL++Y Sbjct: 130 IFITQSPISPSAIRLLTGIPGRFCEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 190 RLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235 [171][TOP] >UniRef100_Q4YN14 Putative uncharacterized protein n=1 Tax=Plasmodium berghei RepID=Q4YN14_PLABE Length = 117 Score = 79.7 bits (195), Expect = 1e-13 Identities = 36/74 (48%), Positives = 51/74 (68%) Frame = -3 Query: 440 LVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTY 261 +VN+TKH L P+H LT +K+NLL++Y I+E +LPR+ D + RY+GL +GQVVK+ Sbjct: 16 VVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIR 75 Query: 260 TGEITQMHVTYRCV 219 E +VTYR V Sbjct: 76 PSETAGRYVTYRLV 89 [172][TOP] >UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae RepID=B0X7A5_CULQU Length = 210 Score = 79.3 bits (194), Expect = 2e-13 Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL + Sbjct: 103 IVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLAR 162 Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y ++E L R+ D +ARY+GL+RGQVVK+ E +++YR V Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [173][TOP] >UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Kluyveromyces lactis RepID=RPAB1_KLULA Length = 215 Score = 79.3 bits (194), Expect = 2e-13 Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 1/114 (0%) Frame = -3 Query: 563 IVNRDTLTGLILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 I ++ TG I I Q+ IT A K + +E F L+VN+T H L PKH L++ Sbjct: 100 ITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSE 158 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 +KK LLK+Y ++E QLPR+ + D +A Y GL+RG+V+K+ E + + +YR Sbjct: 159 AEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212 [174][TOP] >UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE Length = 239 Score = 79.0 bits (193), Expect = 2e-13 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 1/106 (0%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357 I I Q+ I+ A++ + + + E F +LLVN+T H L PKH +L+ ++KK LL +Y Sbjct: 133 IFITQSPISPSAVRLLTGIPGRFCEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHRY 192 Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V Sbjct: 193 RLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 238 [175][TOP] >UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi RepID=Q8T1Q5_TRYCR Length = 219 Score = 78.6 bits (192), Expect = 3e-13 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 5/111 (4%) Frame = -3 Query: 536 LILIVQ---NQITSQALKAINL--LNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372 +I++VQ N I + ++ IN L K+++F DL+VN+T H L PKH L D++ K Sbjct: 108 VIIVVQGRINAIVKRHVEDINRSSLGLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167 Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +L+ + ++ LPR+L TD +A Y GL+RG+VV++ +VTYR V Sbjct: 168 MLQAHALELSALPRILSTDPVAAYLGLERGRVVRIERKSMSAGFYVTYRQV 218 [176][TOP] >UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania braziliensis RepID=A4H9I9_LEIBR Length = 239 Score = 78.6 bits (192), Expect = 3e-13 Identities = 37/86 (43%), Positives = 58/86 (67%) Frame = -3 Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297 + + E+F +L VN+T H L PKH L++++ K++L + ++ QLPR+L TD +ARYY Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVLHAHALELHQLPRILSTDPVARYY 212 Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219 GL+RGQVV++ ++VTYR V Sbjct: 213 GLKRGQVVRIERKSMSAGLYVTYRQV 238 [177][TOP] >UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE Length = 176 Score = 78.2 bits (191), Expect = 4e-13 Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Frame = -3 Query: 464 EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQR 285 + F +L+VNVTKH L PKH + T ++K LL++Y ++E+QLPR+ TD IARY GL+R Sbjct: 93 DFFEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIKVTDPIARYLGLKR 152 Query: 284 GQVVKVTYTGEITQ-MHVTYRCVW 216 GQVVK+ T +V+YR V+ Sbjct: 153 GQVVKIIRENSPTAGRYVSYRLVF 176 [178][TOP] >UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major RepID=Q4QDW4_LEIMA Length = 239 Score = 77.8 bits (190), Expect = 5e-13 Identities = 36/86 (41%), Positives = 58/86 (67%) Frame = -3 Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297 + + E+F +L VN+T H L PKH L++++ +++L + ++ QLPR+L TD +ARYY Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVLHAHALELNQLPRILSTDPVARYY 212 Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219 GL+RGQVV++ ++VTYR V Sbjct: 213 GLRRGQVVRIERKSMSAGLYVTYRQV 238 [179][TOP] >UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania infantum RepID=A4HXV2_LEIIN Length = 239 Score = 77.8 bits (190), Expect = 5e-13 Identities = 36/86 (41%), Positives = 58/86 (67%) Frame = -3 Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297 + + E+F +L VN+T H L PKH L++++ ++L+ + ++ QLPR+L TD +ARYY Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHSPLSEEELTDVLQAHALELNQLPRILSTDPVARYY 212 Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219 GL+RGQVV++ ++VTYR V Sbjct: 213 GLKRGQVVRIERKSMSAGLYVTYRQV 238 [180][TOP] >UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1 Tax=Trypanosoma brucei RepID=Q388R5_9TRYP Length = 219 Score = 77.0 bits (188), Expect = 9e-13 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 5/111 (4%) Frame = -3 Query: 536 LILIVQNQITSQALKAINLLNF-----KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372 +I++ ++ + + ++ +N KV++F DL+VN+T H L PKH L D++ K Sbjct: 108 VIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167 Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +L+ + ++ LPR+L TD +A Y GL+RG+VV++ +VTYR V Sbjct: 168 MLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQV 218 [181][TOP] >UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2 Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG Length = 219 Score = 77.0 bits (188), Expect = 9e-13 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 5/111 (4%) Frame = -3 Query: 536 LILIVQNQITSQALKAINLLNF-----KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372 +I++ ++ + + ++ +N KV++F DL+VN+T H L PKH L D++ K Sbjct: 108 VIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167 Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +L+ + ++ LPR+L TD +A Y GL+RG+VV++ +VTYR V Sbjct: 168 MLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQV 218 [182][TOP] >UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7ECH0_SCLS1 Length = 242 Score = 76.6 bits (187), Expect = 1e-12 Identities = 35/82 (42%), Positives = 54/82 (65%) Frame = -3 Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291 ++E F DLLVN+T H L PKH +L+ +++ LL +Y +++ QLPR+ D +A+Y GL Sbjct: 157 RIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYRLKDTQLPRIQAADPVAKYLGL 216 Query: 290 QRGQVVKVTYTGEITQMHVTYR 225 +RGQVVK+ E + +YR Sbjct: 217 RRGQVVKIIRKSETAGRYASYR 238 [183][TOP] >UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6SPK6_BOTFB Length = 242 Score = 76.3 bits (186), Expect = 2e-12 Identities = 35/82 (42%), Positives = 54/82 (65%) Frame = -3 Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291 ++E F DLLVN+T H L PKH +L+ +++ LL +Y +++ QLPR+ D +A+Y GL Sbjct: 157 RIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYRLKDTQLPRIQAADPVAKYLGL 216 Query: 290 QRGQVVKVTYTGEITQMHVTYR 225 +RGQVVK+ E + +YR Sbjct: 217 RRGQVVKIIRKSETAGRYASYR 238 [184][TOP] >UniRef100_A7QJL5 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7QJL5_VITVI Length = 67 Score = 75.5 bits (184), Expect = 3e-12 Identities = 34/41 (82%), Positives = 36/41 (87%) Frame = -3 Query: 338 LPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216 LPRMLQ DAIARYYGL++GQVVKV Y GEIT HVTYRCVW Sbjct: 27 LPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 67 [185][TOP] >UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE Length = 210 Score = 74.3 bits (181), Expect = 6e-12 Identities = 37/116 (31%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 + +++ I++VQN IT A +A+ + + +E F +L+ N+T++ P+H V+T Sbjct: 94 MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +K+ LL +Y ++E L R+ D ++RY+GL+ GQVVK+ + + +++YR V Sbjct: 154 DEKQELLSRYKLRESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKTAGRYISYRIV 209 [186][TOP] >UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans RepID=Q3LW39_BIGNA Length = 204 Score = 73.9 bits (180), Expect = 8e-12 Identities = 35/108 (32%), Positives = 66/108 (61%), Gaps = 2/108 (1%) Frame = -3 Query: 536 LILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363 +I I + ++ Q A++ NF +EIF ++L+N KH L PKH +L K+ +LK Sbjct: 96 IIFITKRYLSKQTNIALSHFRRNFNIEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILK 155 Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 Y++++ QLP++ +D I++YYG ++G + K+ E ++++YR + Sbjct: 156 SYNVKDSQLPKIKLSDPISKYYGAKKGNMFKIIRFSENIGVYLSYRII 203 [187][TOP] >UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5E0K0_DROPS Length = 210 Score = 73.9 bits (180), Expect = 8e-12 Identities = 37/116 (31%), Positives = 71/116 (61%), Gaps = 2/116 (1%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 + +++ I++VQN IT A +A+ + + +E F +L+ N+T++ P+H V+T Sbjct: 94 MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153 Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +K+ LL +Y ++E L R+ D ++RY+GL+ GQVVK+ + + +++YR V Sbjct: 154 DEKQELLSRYKLKESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKSAGRYISYRIV 209 [188][TOP] >UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SWJ6_PHYPA Length = 211 Score = 72.8 bits (177), Expect = 2e-11 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 6/118 (5%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAIN--LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387 + R+ + + +VQ IT + + I+ + +E+F + LVN+T+ L P H++LT Sbjct: 91 MKRENVPRAVFVVQQHITPLSKQYISRKAQKYHLEVFLEPEFLVNITECYLVPLHEILTP 150 Query: 386 KQKKNLLKKYD----IQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 ++K LL++Y + LP M D +ARYYG+ GQVVK+ + E +VTYR Sbjct: 151 EEKNTLLERYTEGNPVMLVLLPWMQHNDPVARYYGINPGQVVKIIQSSETAGRYVTYR 208 [189][TOP] >UniRef100_Q8SRJ3 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRJ3_ENCCU Length = 212 Score = 72.8 bits (177), Expect = 2e-11 Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Frame = -3 Query: 554 RDTLTGLILIVQNQITSQALKAINLL-NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378 +D + LILI+ + + I L F +EIF + +L+ N TKH P H+VL+ +++ Sbjct: 95 KDNMFHLILILPQLPSPTVMSMIPLTPRFSIEIFLVEELIFNKTKHSWVPPHRVLSREER 154 Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +++ + + LPR+L++D IARYYG ++G VV++T + + YR V Sbjct: 155 ESVFRTLKLGPGDLPRILKSDVIARYYGAKQGDVVEITRRSKTAGESIYYRVV 207 [190][TOP] >UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH Length = 202 Score = 72.8 bits (177), Expect = 2e-11 Identities = 37/113 (32%), Positives = 63/113 (55%) Frame = -3 Query: 557 NRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378 + +++ LILI N++ AL ++ NF +E+F D+L N TKH+L P H++++ ++K Sbjct: 88 SNQSISKLILISCNKLNHAALAYLDKSNFSIELFLYKDILFNPTKHILVPHHKIMSIEEK 147 Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 LL LP +L+ D IA+Y G + V+++T + T YR V Sbjct: 148 TTLLNNLKCSLDDLPIILKKDVIAKYLGAELNDVIEITRKSKTTGESKYYRVV 200 [191][TOP] >UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E isoform 1 n=1 Tax=Canis lupus familiaris RepID=UPI00005A3E0E Length = 208 Score = 72.0 bits (175), Expect = 3e-11 Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 2/118 (1%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D ARY+G + +VVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDQKARYFG--KSEVVKIIRPSETAGRYITYRLV 207 [192][TOP] >UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA polymerases I, II, and III subunit ABC1) (DNA-directed RNA polymerase II subunit E) (RPB5) (DNA-directed RNA polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB19D6 Length = 212 Score = 71.6 bits (174), Expect = 4e-11 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRG--QVVKVTYTGEITQMHVTYRCV 219 T ++ LL +Y ++E QLPR+ D ARY+G QVVK+ E ++TYR V Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDQKARYFGKSEADPQVVKIIRPSETAGRYITYRLV 211 [193][TOP] >UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E n=1 Tax=Macaca mulatta RepID=UPI0000D9E960 Length = 278 Score = 70.5 bits (171), Expect = 9e-11 Identities = 34/98 (34%), Positives = 63/98 (64%), Gaps = 2/98 (2%) Frame = -3 Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393 Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQ 279 T ++ LL +Y ++E QLPR+ D +ARY+G++RGQ Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQ 189 [194][TOP] >UniRef100_A8BWP9 RNA polymerase II subunit Rpb5a n=2 Tax=Giardia intestinalis RepID=A8BWP9_GIALA Length = 229 Score = 70.5 bits (171), Expect = 9e-11 Identities = 33/81 (40%), Positives = 53/81 (65%) Frame = -3 Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288 +E F +T LL+N+TKHVL PKH +L++ +K +LK+Y E Q+P + +D +ARY GL Sbjct: 146 IEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLL 205 Query: 287 RGQVVKVTYTGEITQMHVTYR 225 VV+++ E ++ T+R Sbjct: 206 PNDVVRISRPSETVGIYTTFR 226 [195][TOP] >UniRef100_C6LZS6 RNA polymerase II subunit Rpb5a n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LZS6_GIALA Length = 229 Score = 69.3 bits (168), Expect = 2e-10 Identities = 32/81 (39%), Positives = 53/81 (65%) Frame = -3 Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288 +E F +T LL+N+T+HVL PKH +L++ +K +LK+Y E Q+P + +D +ARY GL Sbjct: 146 IEHFLVTRLLINITRHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLL 205 Query: 287 RGQVVKVTYTGEITQMHVTYR 225 VV+++ E ++ T+R Sbjct: 206 PNDVVRISRPSETVGIYTTFR 226 [196][TOP] >UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LN15_9ALVE Length = 168 Score = 66.2 bits (160), Expect = 2e-09 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 3/112 (2%) Frame = -3 Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372 L+ IL+VQ +T+ A AI + ++E+F ++L+VN+T H L P+H+ LT ++K+ Sbjct: 68 LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRL 127 Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219 LL++Y ++E QLPR+ +D V+K+ E +VTYR CV Sbjct: 128 LLERYKVKENQLPRIQSSD-----------PVMKIIRPSETAGRYVTYRLCV 168 [197][TOP] >UniRef100_C6LZX1 RNA polymerase II subunit Rpb5b n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LZX1_GIALA Length = 201 Score = 63.5 bits (153), Expect = 1e-08 Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 1/116 (0%) Frame = -3 Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVL 393 GQ ++++ + + I T+ ++N +++I+ + L+N TKH L PKH +L Sbjct: 83 GQYLDQEAVQKCLFIYFGGPTTSCRSEHRVINDVEIDIYDFSQFLINPTKHSLVPKHTIL 142 Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225 + +K +L + + E Q+P + +D I R+Y + G +++V T T H+ YR Sbjct: 143 SSTEKARVLAELRVTEAQIPLIQASDPIMRWYDAKPGDLIRVMRTSSSTGKHLYYR 198 [198][TOP] >UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays RepID=B6SJT2_MAIZE Length = 154 Score = 63.2 bits (152), Expect = 1e-08 Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 1/62 (1%) Frame = -3 Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384 V + L LILI+Q +I S ++I + FKV+ F+IT+LLVN+TKHVLKPKH+VLT + Sbjct: 92 VKDENLARLILILQGKIMSPTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 151 Query: 383 QK 378 K Sbjct: 152 GK 153 [199][TOP] >UniRef100_C9RDL1 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus vulcanius M7 RepID=C9RDL1_9EURY Length = 84 Score = 61.2 bits (147), Expect = 5e-08 Identities = 24/75 (32%), Positives = 47/75 (62%) Frame = -3 Query: 443 LLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 264 +++ VT H+L PKH+++ ++ +LKKY+I+ +QLP++ + D + + G + G V+K+T Sbjct: 5 IILKVTNHILVPKHEIVPKEEVDEILKKYNIKIQQLPKIYEDDPVIQEIGAKEGDVIKIT 64 Query: 263 YTGEITQMHVTYRCV 219 + + YR V Sbjct: 65 RNSPTAGLSIAYRLV 79 [200][TOP] >UniRef100_A8B5W9 RNA polymerase II subunit Rpb5b n=2 Tax=Giardia intestinalis RepID=A8B5W9_GIALA Length = 201 Score = 59.7 bits (143), Expect = 2e-07 Identities = 27/82 (32%), Positives = 48/82 (58%) Frame = -3 Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291 +V+I + L+N TKH L PKH +L++ +K +L + + E Q+P + +D I R+Y Sbjct: 117 EVDIHDFSQFLINPTKHRLVPKHTILSNTEKARVLAELRVTEAQIPLIQTSDPIMRWYDA 176 Query: 290 QRGQVVKVTYTGEITQMHVTYR 225 + G ++++T T H+ YR Sbjct: 177 KPGDLIRITRTSGSAGKHLYYR 198 [201][TOP] >UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide E, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925DCF Length = 187 Score = 58.5 bits (140), Expect = 3e-07 Identities = 34/91 (37%), Positives = 51/91 (56%) Frame = -3 Query: 416 LKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMH 237 L P+H VL+ ++K LL +Y +++ QLPR+ Q D IARY+GL+RGQ V Y + Sbjct: 101 LVPEHVVLSPEEKAELLTRYKLKDHQLPRIQQGDTIARYFGLKRGQFVCTFY----FNLG 156 Query: 236 VTYRCVW*YFLGLGFSLVLLFEFSEFICCIV 144 V C+ + +GF L F + C +V Sbjct: 157 VWQHCISSQYEVIGFFL-NFDNFGSYTCVVV 186 [202][TOP] >UniRef100_O27122 DNA-directed RNA polymerase subunit H n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=RPOH_METTH Length = 77 Score = 58.5 bits (140), Expect = 3e-07 Identities = 26/71 (36%), Positives = 42/71 (59%) Frame = -3 Query: 431 VTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGE 252 + KH L P+H +L + + K +LK+ D +QLP++ TD +A+ G +RG +VK+ Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64 Query: 251 ITQMHVTYRCV 219 + VTYR V Sbjct: 65 TAEEFVTYRLV 75 [203][TOP] >UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7EQI7_ORYSJ Length = 167 Score = 57.8 bits (138), Expect = 6e-07 Identities = 27/68 (39%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +++ A A+ ++ F +E+F+ +LLVN+ H L P+H++LT +QKK LL++ Sbjct: 98 ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157 Query: 359 YDIQEKQL 336 Y ++E Q+ Sbjct: 158 YTVKETQV 165 [204][TOP] >UniRef100_Q4QDW3 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania major RepID=Q4QDW3_LEIMA Length = 342 Score = 57.8 bits (138), Expect = 6e-07 Identities = 28/83 (33%), Positives = 46/83 (55%) Frame = -3 Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288 +++F L NV +H P+H LT + + L + + QLPRM ++D + +Y GLQ Sbjct: 259 IQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQ 318 Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219 RG +V +T G+ + + YR V Sbjct: 319 RGSIVHITREGKQSGPYSMYRHV 341 [205][TOP] >UniRef100_A4HXV3 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania infantum RepID=A4HXV3_LEIIN Length = 342 Score = 57.8 bits (138), Expect = 6e-07 Identities = 28/83 (33%), Positives = 46/83 (55%) Frame = -3 Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288 +++F L NV +H P+H LT + + L + + QLPRM ++D + +Y GLQ Sbjct: 259 IQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQ 318 Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219 RG +V +T G+ + + YR V Sbjct: 319 RGSIVHITREGKQSGPYSMYRHV 341 [206][TOP] >UniRef100_UPI000155C2F2 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide E, 25kDa n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155C2F2 Length = 60 Score = 57.0 bits (136), Expect = 1e-06 Identities = 25/59 (42%), Positives = 39/59 (66%) Frame = -3 Query: 395 LTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219 +T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V Sbjct: 1 MTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 59 [207][TOP] >UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=A9NTD1_PICSI Length = 191 Score = 57.0 bits (136), Expect = 1e-06 Identities = 27/68 (39%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Frame = -3 Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360 IL+VQ +T A +++ + F +E+F+ +LLVN+ +HVL P+ Q+LT ++KK LL++ Sbjct: 98 ILVVQQALTPFARQSVQEFSGKFHLEVFQEAELLVNIKEHVLVPEQQILTPEEKKTLLER 157 Query: 359 YDIQEKQL 336 Y ++E Q+ Sbjct: 158 YTLKETQV 165 [208][TOP] >UniRef100_Q91F72 Putative DNA-directed RNA polymerase subunit 454R n=1 Tax=Invertebrate iridescent virus 6 RepID=454R_IIV6 Length = 184 Score = 56.6 bits (135), Expect = 1e-06 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%) Frame = -3 Query: 530 LIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY-- 357 +I IT+ K KVEIF DL +N+TK+ L+P L D++ K+ KKY Sbjct: 75 IICDGSITTNVKKIEQTTKGKVEIFHNKDLQMNITKYHLQPLFNKLLDEEAKDFKKKYIK 134 Query: 356 -------DIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 264 I + P M ++D IAR++ Q G V+K+T Sbjct: 135 CKIENGKKIILQSFPSMSKSDPIARFFKYQSGDVIKIT 172 [209][TOP] >UniRef100_C7P938 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P938_METFA Length = 78 Score = 55.5 bits (132), Expect = 3e-06 Identities = 23/73 (31%), Positives = 45/73 (61%) Frame = -3 Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258 + VT H+L PKH+++ ++ + +LK+Y+I+ +QLP++ + D + + G + G VV++ Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRIIRK 60 Query: 257 GEITQMHVTYRCV 219 + V YR V Sbjct: 61 SPTAGVSVAYRLV 73 [210][TOP] >UniRef100_C5U6G3 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus infernus ME RepID=C5U6G3_9EURY Length = 78 Score = 55.5 bits (132), Expect = 3e-06 Identities = 26/73 (35%), Positives = 43/73 (58%) Frame = -3 Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258 + VT H+L PKH++L+ ++ + LLKK I+ +QLP++ + D + + G + G VVK+ Sbjct: 1 MKVTDHILVPKHEILSKEEVEELLKKLRIKIQQLPKIYEDDPVIQEIGAKEGDVVKIIRE 60 Query: 257 GEITQMHVTYRCV 219 V YR V Sbjct: 61 SPTAGTFVAYRLV 73 [211][TOP] >UniRef100_Q58443 DNA-directed RNA polymerase subunit H n=1 Tax=Methanocaldococcus jannaschii RepID=RPOH_METJA Length = 78 Score = 55.5 bits (132), Expect = 3e-06 Identities = 23/73 (31%), Positives = 45/73 (61%) Frame = -3 Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258 + VT H+L PKH+++ ++ + +LK+Y+I+ +QLP++ + D + + G + G VV+V Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60 Query: 257 GEITQMHVTYRCV 219 + + YR V Sbjct: 61 SPTAGVSIAYRLV 73 [212][TOP] >UniRef100_A4H9J0 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania braziliensis RepID=A4H9J0_LEIBR Length = 322 Score = 55.1 bits (131), Expect = 4e-06 Identities = 27/83 (32%), Positives = 44/83 (53%) Frame = -3 Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288 +++F L NV +H P H L+ + L + + QLPRML++D + +Y GL Sbjct: 239 IQVFEEEALAFNVVRHETVPHHVALSPTEAAMFLAERKLNVSQLPRMLESDPLVQYLGLH 298 Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219 RG +V +T G+ + + YR V Sbjct: 299 RGSIVHITREGKQSGPYSMYRHV 321 [213][TOP] >UniRef100_O74019 DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus horikoshii RepID=RPOH_PYRHO Length = 82 Score = 55.1 bits (131), Expect = 4e-06 Identities = 24/72 (33%), Positives = 44/72 (61%) Frame = -3 Query: 434 NVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTG 255 N+ KHVL P+H++L++++KK LL+KY I QLP++ +D + G + G ++++ Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEIKRRS 67 Query: 254 EITQMHVTYRCV 219 ++ YR V Sbjct: 68 PTAGVYYYYRVV 79 [214][TOP] >UniRef100_Q9V116 DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus abyssi RepID=RPOH_PYRAB Length = 82 Score = 54.7 bits (130), Expect = 5e-06 Identities = 24/72 (33%), Positives = 44/72 (61%) Frame = -3 Query: 434 NVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTG 255 N+ KHVL P+H++L++++KK LL+KY I QLP++ +D + G + G ++++ Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67 Query: 254 EITQMHVTYRCV 219 ++ YR V Sbjct: 68 PTAGVYYYYRVV 79