[UP]
[1][TOP]
>UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR
Length = 248
Score = 226 bits (577), Expect = 7e-58
Identities = 112/118 (94%), Positives = 117/118 (99%)
Frame = -3
Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
GQIVNR++LTGLILIVQNQITSQALKA+NLL+FKVEIF+ITDLLVN TKHVLKPKHQVLT
Sbjct: 131 GQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQVLT 190
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW
Sbjct: 191 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 248
[2][TOP]
>UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXN9_SOYBN
Length = 237
Score = 216 bits (551), Expect = 7e-55
Identities = 104/118 (88%), Positives = 115/118 (97%)
Frame = -3
Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
GQI+NRDTLTGLILIV+N ITSQALKA+NL +FKVEIF+ITDLLVN+TKHVLKPKHQVLT
Sbjct: 120 GQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLT 179
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
DKQK NLLKKY+I+EKQLPRMLQTDAIARYYGL+RGQVVKVTY+GE+TQMHVTYRCVW
Sbjct: 180 DKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 237
[3][TOP]
>UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9ST46_RICCO
Length = 238
Score = 194 bits (493), Expect = 4e-48
Identities = 90/118 (76%), Positives = 111/118 (94%)
Frame = -3
Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
GQIVN+D+LTGLIL++QNQIT+QA+KA++L FKVE+F+ITDLLVN+TKHVLKPKHQVLT
Sbjct: 121 GQIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLKPKHQVLT 180
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
D++K+ LLK Y I+EKQLPR+L+ DAIARYYGL++GQVVKVTY+GEIT+ HVTYRCVW
Sbjct: 181 DREKQKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVTYSGEITESHVTYRCVW 238
[4][TOP]
>UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR
Length = 216
Score = 183 bits (464), Expect = 9e-45
Identities = 84/117 (71%), Positives = 106/117 (90%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
QI +RD+LTGLIL++QN IT+QA+KA++L FK+EIF+ITDLLVN+TKH+LKPKHQVL++
Sbjct: 100 QITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITDLLVNITKHILKPKHQVLSE 159
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
+ K+ LLKKY I+EKQLPR+L+ DAI+RYYGL+RGQVVKVTY G+IT HVTYRCVW
Sbjct: 160 QAKQRLLKKYSIEEKQLPRLLKKDAISRYYGLERGQVVKVTYDGDITGSHVTYRCVW 216
[5][TOP]
>UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QJL2_VITVI
Length = 229
Score = 182 bits (463), Expect = 1e-44
Identities = 87/117 (74%), Positives = 104/117 (88%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
QIVN+D+L+ LIL++QN ITSQALKA++L +F+VE F+ITDLLVN+TKHVLKPKH+VLTD
Sbjct: 113 QIVNKDSLSKLILVLQNHITSQALKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTD 172
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
++K LLKKY + EKQLPRMLQ DAIARYYGL++GQVVKV Y GEIT HVTYRCVW
Sbjct: 173 QEKNKLLKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 229
[6][TOP]
>UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis
thaliana RepID=Q9M1J2_ARATH
Length = 222
Score = 169 bits (429), Expect = 1e-40
Identities = 77/116 (66%), Positives = 101/116 (87%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
I++++T+TGLIL++QN +T+QALKAI L +FKVEIF+ITDLLVN+TKH LKP+HQVL D+
Sbjct: 107 ILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDE 166
Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
+K LLKK+ I+EKQLPR+ + DAI RYYGL++GQVVKV Y GE+T+ HV +RCVW
Sbjct: 167 EKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222
[7][TOP]
>UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1
Tax=Arabidopsis thaliana RepID=Q8L947_ARATH
Length = 222
Score = 169 bits (429), Expect = 1e-40
Identities = 77/116 (66%), Positives = 101/116 (87%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
I++++T+TGLIL++QN +T+QALKAI L +FKVEIF+ITDLLVN+TKH LKP+HQVL D+
Sbjct: 107 ILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDE 166
Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
+K LLKK+ I+EKQLPR+ + DAI RYYGL++GQVVKV Y GE+T+ HV +RCVW
Sbjct: 167 EKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKVNYRGELTESHVAFRCVW 222
[8][TOP]
>UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1
Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH
Length = 218
Score = 162 bits (411), Expect = 1e-38
Identities = 74/115 (64%), Positives = 99/115 (86%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
+++R+ +TGLIL++Q+ IT+QALKA+ L +FKVE+F ITDLLVNV+KHVL+PKHQVL DK
Sbjct: 103 VLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDK 162
Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+K++LLKK+ I+EKQLPR+ D I RYYGL+ GQV+KVTY E+++ HVTYRCV
Sbjct: 163 EKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217
[9][TOP]
>UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA
Length = 223
Score = 153 bits (386), Expect = 1e-35
Identities = 68/117 (58%), Positives = 100/117 (85%), Gaps = 1/117 (0%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
++ R+ LTGLIL++Q+ IT+QALKA+ L +FKVE+F++T+LLVN+TKHVL+PKH VL ++
Sbjct: 107 VLGRENLTGLILVLQSDITNQALKAVELFSFKVELFQLTELLVNITKHVLRPKHHVLNEQ 166
Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQM-HVTYRCVW 216
+K++L KK+ IQE+QLP++L+ D A+YYGL++GQVV+VTY GE ++ HV+YRC W
Sbjct: 167 EKESLFKKFSIQEQQLPKLLKKDPTAKYYGLEKGQVVEVTYKGEGSESDHVSYRCAW 223
[10][TOP]
>UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR
Length = 233
Score = 145 bits (366), Expect = 2e-33
Identities = 67/117 (57%), Positives = 96/117 (82%)
Frame = -3
Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
GQI+N+++L GLILI+Q+++ A K + FKVE+F+ITDLLVN+TKHVL+P+ +LT
Sbjct: 116 GQILNKESLHGLILILQSKMNHFAKKELEKFPFKVEVFQITDLLVNITKHVLQPQMDILT 175
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+QK+ ++ KY +++KQLPRML++DAI +YYGLQ+GQ+VK+TY+GEI VTYRCV
Sbjct: 176 AEQKQQVMNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKITYSGEIVDHLVTYRCV 232
[11][TOP]
>UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RGC5_RICCO
Length = 239
Score = 142 bits (358), Expect = 2e-32
Identities = 68/116 (58%), Positives = 91/116 (78%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
QI N+++L GLILI+Q+++ A K + KVEIF I+DLLVN+TKHVLKP+H+VLT
Sbjct: 123 QIKNKESLNGLILILQSKMNHYARKELGQFPSKVEIFHISDLLVNITKHVLKPRHEVLTA 182
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+QK+ LL K+ ++KQLPRML TDAI+RYYG ++GQVVK+TY+G + VTYRCV
Sbjct: 183 EQKQQLLNKFSSEDKQLPRMLVTDAISRYYGFEKGQVVKITYSGGLVDSLVTYRCV 238
[12][TOP]
>UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q2QXY2_ORYSJ
Length = 335
Score = 140 bits (352), Expect = 9e-32
Identities = 67/113 (59%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Frame = -3
Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
+ L+ L+LI+Q++I S+A +AI + FKV+IF+ TDLLVN+TKHVLKPKH+VL+ QK
Sbjct: 223 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 282
Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
LLK+Y++++ QLPRML+TDA+ARYYG +G VVKVTY GE+T V YRCV+
Sbjct: 283 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 335
[13][TOP]
>UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ
Length = 227
Score = 140 bits (352), Expect = 9e-32
Identities = 67/113 (59%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Frame = -3
Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
+ L+ L+LI+Q++I S+A +AI + FKV+IF+ TDLLVN+TKHVLKPKH+VL+ QK
Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174
Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
LLK+Y++++ QLPRML+TDA+ARYYG +G VVKVTY GE+T V YRCV+
Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVTYDGELTGKRVAYRCVF 227
[14][TOP]
>UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q2RAP1_ORYSJ
Length = 227
Score = 137 bits (346), Expect = 4e-31
Identities = 66/113 (58%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Frame = -3
Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
+ L+ L+LI+Q++I S+A +AI + FKV+IF+ TDLLVN+TKHVLKPKH+VL+ QK
Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174
Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
LLK+Y++++ QLPRML+TDA+ARYYG +G VVKV Y GE+T V YRCV+
Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227
[15][TOP]
>UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
Tax=Medicago truncatula RepID=Q2HW77_MEDTR
Length = 224
Score = 137 bits (346), Expect = 4e-31
Identities = 66/116 (56%), Positives = 93/116 (80%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
QIV+++ L+ LIL++Q+++TS A K + FKVEI ++ DLLVNVTKHVL+PK++VLT
Sbjct: 108 QIVDKERLSRLILVMQSKMTSYARKELENCPFKVEIIQLNDLLVNVTKHVLQPKYEVLTA 167
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+K+ LL KY ++EKQLP ML+TDAIA YYGL++GQVVK++++GE+ V YRCV
Sbjct: 168 NEKQKLLNKYKVEEKQLPHMLRTDAIASYYGLEKGQVVKISHSGEMFNSLVMYRCV 223
[16][TOP]
>UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2ZBC5_ORYSI
Length = 227
Score = 137 bits (346), Expect = 4e-31
Identities = 66/113 (58%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Frame = -3
Query: 551 DTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
+ L+ L+LI+Q++I S+A +AI + FKV+IF+ TDLLVN+TKHVLKPKH+VL+ QK
Sbjct: 115 ENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKA 174
Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
LLK+Y++++ QLPRML+TDA+ARYYG +G VVKV Y GE+T V YRCV+
Sbjct: 175 KLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVKVIYDGELTGKRVAYRCVF 227
[17][TOP]
>UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum
bicolor RepID=C5Y4H1_SORBI
Length = 263
Score = 135 bits (339), Expect = 3e-30
Identities = 66/116 (56%), Positives = 90/116 (77%), Gaps = 1/116 (0%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
V + L+ LILI+Q +I S+A +AI + +KV+ F+IT+LLVN+TKH LKPKHQVLT +
Sbjct: 148 VKDENLSRLILILQGRIMSKAREAIKEIFPYKVDTFQITELLVNITKHALKPKHQVLTAE 207
Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
+K LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y E+T HVTYRC++
Sbjct: 208 EKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCIF 263
[18][TOP]
>UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
RepID=B6TJI5_MAIZE
Length = 264
Score = 132 bits (331), Expect = 2e-29
Identities = 65/115 (56%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
V + L+ LILI+Q +I S ++I + FKV+ F+IT+LLVN+TKHVLKPKH+VLT +
Sbjct: 149 VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 208
Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
K LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y E+T HVTYRC+
Sbjct: 209 GKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 263
[19][TOP]
>UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FYH9_MAIZE
Length = 248
Score = 132 bits (331), Expect = 2e-29
Identities = 65/115 (56%), Positives = 87/115 (75%), Gaps = 1/115 (0%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
V + L+ LILI+Q +I S ++I + FKV+ F+IT+LLVN+TKHVLKPKH+VLT +
Sbjct: 133 VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 192
Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
K LLK+Y++ + QLPRML+ DA+ARYYGL +G VVKV Y E+T HVTYRC+
Sbjct: 193 GKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVKVIYDSELTGNHVTYRCI 247
[20][TOP]
>UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence
n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI
Length = 221
Score = 129 bits (325), Expect = 1e-28
Identities = 60/116 (51%), Positives = 88/116 (75%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
Q +NR+ L LIL++Q+++ S A K ++ KVE F+IT+LL+N+TKHV PKH++L+
Sbjct: 105 QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 164
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T VTYRCV
Sbjct: 165 QEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 220
[21][TOP]
>UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001985D3D
Length = 1260
Score = 129 bits (324), Expect = 2e-28
Identities = 59/116 (50%), Positives = 88/116 (75%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
Q +NR+ L LIL++Q+++ S A K ++ KVE F+IT+LL+N+TKHV PKH++L+
Sbjct: 105 QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 164
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T VTYRC+
Sbjct: 165 QEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCI 220
[22][TOP]
>UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B0H1_VITVI
Length = 162
Score = 129 bits (324), Expect = 2e-28
Identities = 60/116 (51%), Positives = 88/116 (75%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
Q +NR+ L LIL++Q+++ S A K ++ KVE F+IT+LL+N+TKHV PKH++L+
Sbjct: 46 QQINREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITELLINITKHVSVPKHEILSA 105
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++K+ L+ KY +++KQ P M + DAIARYYGL++GQVVK+TY G +T VTYRCV
Sbjct: 106 QEKRKLVNKYKLEDKQXPIMQKDDAIARYYGLEKGQVVKITYKGGMTDSLVTYRCV 161
[23][TOP]
>UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis
thaliana RepID=Q9M1H8_ARATH
Length = 233
Score = 108 bits (270), Expect = 3e-22
Identities = 52/116 (44%), Positives = 80/116 (68%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
QI N L +IL++Q+++ A KA+ F VE F I DLLVN+TKH+ +PK ++L
Sbjct: 117 QISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNK 176
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++K+ LL+K+ +++KQLP + + D+ RYYGL++ QVVK+TY+ E VTYRC+
Sbjct: 177 EEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232
[24][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
Length = 206
Score = 106 bits (264), Expect = 1e-21
Identities = 54/107 (50%), Positives = 77/107 (71%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +T A IN ++ F +E+F+ +LLVN+ +HVL P+HQVL++++KK LL++
Sbjct: 99 ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLER 158
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V
Sbjct: 159 YTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 205
[25][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
guineensis RepID=B3TLL2_ELAGV
Length = 204
Score = 105 bits (262), Expect = 2e-21
Identities = 55/113 (48%), Positives = 81/113 (71%), Gaps = 2/113 (1%)
Frame = -3
Query: 551 DTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
+ +T IL+VQ +T A +++ ++ K +E+F+ T+LLVN+ +HVL P+HQVLT ++K
Sbjct: 91 ENVTRGILVVQQALTPFARQSLAEVSQKYMLEVFQDTELLVNIKEHVLVPEHQVLTSEEK 150
Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
K LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V
Sbjct: 151 KTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 203
[26][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXZ4_SOYBN
Length = 206
Score = 104 bits (260), Expect = 4e-21
Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
+N + + IL+ Q +T A I+ ++ F +E+F+ +LLVN+ +H L P+HQVLTD
Sbjct: 90 MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTD 149
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+KK LL++Y ++E QLPR+ TD +ARYYGL+RGQVVK+ E +VTYR V
Sbjct: 150 AEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 205
[27][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SVA4_SOYBN
Length = 206
Score = 104 bits (260), Expect = 4e-21
Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
+N + + IL+ Q +T A I+ ++ F +E+F+ +LLVN+ +H L P+HQVLTD
Sbjct: 90 MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTD 149
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+KK LL++Y ++E QLPR+ TD +ARYYGL+RGQVVK+ E +VTYR V
Sbjct: 150 AEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 205
[28][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PEL2_VITVI
Length = 206
Score = 104 bits (259), Expect = 5e-21
Identities = 52/107 (48%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +T A IN ++ F +E+F+ +LLVN+ +HVL P+HQVLT ++KK LL++
Sbjct: 99 ILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLER 158
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPR+ +D IARY+GL+RGQVVK+ E ++TYR V
Sbjct: 159 YTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYV 205
[29][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
thaliana RepID=O81098_ARATH
Length = 205
Score = 103 bits (256), Expect = 1e-20
Identities = 52/107 (48%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +T A I+ ++ F +E+F+ ++LVN+ +HVL P+HQVLT ++KK LL++
Sbjct: 98 ILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPR+ TD IARY+GL+RGQVVK+ E +VTYR V
Sbjct: 158 YTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYV 204
[30][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RKM1_RICCO
Length = 225
Score = 103 bits (256), Expect = 1e-20
Identities = 53/107 (49%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +T A I + F +E+F+ ++LLVN+ +HVL P+HQVLT+++KK LL++
Sbjct: 118 ILVVQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLER 177
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPR+ +D IARYYGL+RGQVVK+ E +VTYR V
Sbjct: 178 YTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYV 224
[31][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
RepID=B4FU06_MAIZE
Length = 210
Score = 102 bits (253), Expect = 3e-20
Identities = 51/118 (43%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393
+++ + ++ +L++Q +T A + L K+ EIF+ ++L+N+ +HVL P+HQVL
Sbjct: 92 EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVPEHQVL 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T+++KK LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V
Sbjct: 152 TNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209
[32][TOP]
>UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FEX9_MAIZE
Length = 127
Score = 102 bits (253), Expect = 3e-20
Identities = 51/118 (43%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393
+++ + ++ +L++Q +T A + L K+ EIF+ ++L+N+ +HVL P+HQVL
Sbjct: 9 EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVPEHQVL 68
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T+++KK LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V
Sbjct: 69 TNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 126
[33][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWG5_PHYPA
Length = 208
Score = 102 bits (253), Expect = 3e-20
Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +T A + ++ + + +E+F+ +LLVN+ +HVL P H+VLT +KK LL++
Sbjct: 101 ILVVQQNLTPFARQCVSEMASKYHLEVFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLER 160
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPRM + D +ARYYGL+RGQVVK+ E +VTYR V
Sbjct: 161 YTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 207
[34][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
Length = 210
Score = 101 bits (252), Expect = 3e-20
Identities = 51/118 (43%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393
+++ + ++ +L++Q +T A + L K+ EIF+ +LL+N+ +HVL P+HQVL
Sbjct: 92 EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLINIKEHVLVPEHQVL 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+++KK LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V
Sbjct: 152 NNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209
[35][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XUF8_ORYSJ
Length = 205
Score = 100 bits (250), Expect = 6e-20
Identities = 50/107 (46%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +++ A A+ ++ F +E+F+ +LLVN+ H L P+H++LT +QKK LL++
Sbjct: 98 ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPR+ TD IARYYG++RGQVVK+ E +VTYR V
Sbjct: 158 YTVKETQLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYV 204
[36][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9ETS9_ORYSJ
Length = 210
Score = 100 bits (249), Expect = 8e-20
Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFRITDLLVNVTKHVLKPKHQVL 393
+++ + ++ +L++Q +T A + L K+ EIF+ +LL+N+ +HVL P+HQVL
Sbjct: 92 EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLINIKEHVLVPEHQVL 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+ +KK LL++Y ++E QLPR+ TD IARYYGL+RGQVVK+ E +VTYR V
Sbjct: 152 NNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYV 209
[37][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FGM1_MAIZE
Length = 206
Score = 100 bits (248), Expect = 1e-19
Identities = 52/115 (45%), Positives = 78/115 (67%), Gaps = 2/115 (1%)
Frame = -3
Query: 557 NRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDK 384
N + G IL+VQ +++ A A+ ++ K +E+F+ +LLVN+ HVL P+H +LT +
Sbjct: 92 NENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLVNIKDHVLVPEHVLLTPE 150
Query: 383 QKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
KK LL++Y ++E QLPR+ TD IARYYG++RGQVVK+T E ++TYR V
Sbjct: 151 DKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKITRASETAGRYITYRYV 205
[38][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RKG6_PHYPA
Length = 208
Score = 99.8 bits (247), Expect = 1e-19
Identities = 50/107 (46%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +T A + ++ ++ K VE+F+ +LLVN+ HVL P+H+VL ++K LL++
Sbjct: 101 ILVVQQNLTPFARQCVSEMSSKYHVEVFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQR 160
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPRM + D +ARYYGL+RGQVVK+ E +VTYR V
Sbjct: 161 YTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFV 207
[39][TOP]
>UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP
Length = 216
Score = 99.8 bits (247), Expect = 1e-19
Identities = 45/115 (39%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITS---QALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
+ +D I+++ ++TS QA+ +IN L+ K+E F ++L+VN+T+H L PKH++++
Sbjct: 98 IKQDGFQNSIIVLHGKLTSHAKQAINSINSLDDKIEYFSESELIVNITEHNLVPKHEIIS 157
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
+++ + L K+Y I+E QLPR+ + D IARY+GLQ+ Q++K+ + E + +VTYR
Sbjct: 158 EEEARCLFKRYSIRENQLPRINKRDPIARYFGLQKNQIMKIIRSSETSGRYVTYR 212
[40][TOP]
>UniRef100_C5YQI4 Putative uncharacterized protein Sb08g001130 n=1 Tax=Sorghum
bicolor RepID=C5YQI4_SORBI
Length = 274
Score = 99.4 bits (246), Expect = 2e-19
Identities = 44/82 (53%), Positives = 61/82 (74%)
Frame = -3
Query: 461 IFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRG 282
+F + LVN+TKHVLKPKH+VLT ++K L K Y++ + LP ML++DA+A Y G ++G
Sbjct: 193 LFNVRSRLVNITKHVLKPKHEVLTVEEKVKLQKDYNVVDSHLPLMLESDAVAHYQGFRQG 252
Query: 281 QVVKVTYTGEITQMHVTYRCVW 216
VVKVTY E+T HVTYRC++
Sbjct: 253 TVVKVTYDNELTGNHVTYRCIF 274
[41][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7FSY0_PHATR
Length = 228
Score = 98.6 bits (244), Expect = 3e-19
Identities = 48/111 (43%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
Frame = -3
Query: 551 DTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
++++ I+I++ IT A +A+ ++ F++E F+ ++LLV++TKH L P HQVLT +K
Sbjct: 115 ESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEK 174
Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
LLK+Y +++ QLPR+ D +ARYYG++RGQVVK+ E +VTYR
Sbjct: 175 NELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYR 225
[42][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LR68_PICSI
Length = 194
Score = 98.2 bits (243), Expect = 4e-19
Identities = 48/105 (45%), Positives = 72/105 (68%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYD 354
IL+VQ + + + F +E+F+ +LLVN+ +HVL P+ Q+LT ++KK LL++Y
Sbjct: 98 ILVVQQEFSGK---------FHLEVFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYT 148
Query: 353 IQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPRM ++D +ARYYGL+RGQVVK+ E +VTYR V
Sbjct: 149 LKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYV 193
[43][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
RepID=Q5DDM1_SCHJA
Length = 206
Score = 97.4 bits (241), Expect = 7e-19
Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVL 393
Q+ T ++++ + +T A AI L+ K +E F +L+VN+T+H L P+H VL
Sbjct: 88 QMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMVNITEHQLVPQHDVL 147
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++KK LL++Y ++E QLP+M +D +ARYYGL+RGQVV++T E ++TYR V
Sbjct: 148 TQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPSETAGRYITYRIV 205
[44][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
Length = 208
Score = 97.4 bits (241), Expect = 7e-19
Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVL 393
Q+ T ++++ + +T A AI L+ K +E F +L+VN+T+H L P+H VL
Sbjct: 90 QMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFENELMVNITEHQLVPQHNVL 149
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++KK LL++Y ++E QLP+M +D +ARYYGL+RGQVV++T E ++TYR V
Sbjct: 150 TQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVRITRPSETAGRYITYRIV 207
[45][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
Length = 1124
Score = 95.1 bits (235), Expect = 3e-18
Identities = 49/109 (44%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Frame = -3
Query: 533 ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
I++VQ +T Q+L F +E F+ T+LLVN+ HVL P+H +L+D+QK+ LL+
Sbjct: 1016 IIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLE 1075
Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
+Y +++ QLPR+ D IARYYG++RGQVV++ E +VTYR CV
Sbjct: 1076 RYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 1124
[46][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
Length = 205
Score = 95.1 bits (235), Expect = 3e-18
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T+ A AI+ + +E F ++LLVN+TKH L PKH LT+ +K+NLL +
Sbjct: 98 ILVTQNVLTAFARDAISEAAPRHIIENFMESELLVNITKHELVPKHVPLTNDEKQNLLNR 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPR+ D +ARY+GL RGQVVK+ E +VTYR V
Sbjct: 158 YRVKEIQLPRIQSADPVARYFGLSRGQVVKIIRPSETAGRYVTYRLV 204
[47][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
pseudonana CCMP1335 RepID=B8C1Q1_THAPS
Length = 226
Score = 94.7 bits (234), Expect = 4e-18
Identities = 46/111 (41%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
Frame = -3
Query: 551 DTLTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
+ ++ IL+++ IT A +A+ ++ F++E F+ +LLV++T+H L P+H VL+ +K
Sbjct: 113 ENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEK 172
Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
+ LLK+Y ++E QLPR+ D +ARYYG++RGQVVK+ E +VTYR
Sbjct: 173 QELLKRYRLRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYR 223
[48][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
Tax=Theileria annulata RepID=Q4U8E3_THEAN
Length = 205
Score = 94.4 bits (233), Expect = 6e-18
Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T A AI K +E F T+LLVN+TKH L PKH LT ++K+NLL+K
Sbjct: 98 ILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQK 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E Q+PR+ D +ARY+GL +GQVVK+ E +VT+R V
Sbjct: 158 YKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLV 204
[49][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N141_THEPA
Length = 205
Score = 94.4 bits (233), Expect = 6e-18
Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T A AI K +E F T+LLVN+TKH L PKH LT ++K+NLL+K
Sbjct: 98 ILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQNLLQK 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E Q+PR+ D +ARY+GL +GQVVK+ E +VT+R V
Sbjct: 158 YKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLV 204
[50][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
Length = 213
Score = 94.4 bits (233), Expect = 6e-18
Identities = 48/112 (42%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Frame = -3
Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
L+ IL+VQ +T+ A AI + ++E+F ++L+VN+T H L P+H+ LT ++K+
Sbjct: 102 LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTPEEKRL 161
Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
LL++Y ++E QLPR+ +D +ARYYGL++GQV+K+ E +VTYR CV
Sbjct: 162 LLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213
[51][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JZQ6_SCHJY
Length = 211
Score = 94.4 bits (233), Expect = 6e-18
Identities = 48/105 (45%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
ILI N +T A K I+ + F +E F+ +DL+VN+T H L PKH +LT ++KK LL +
Sbjct: 104 ILIYANNMTPSATKIISTVTGQFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDR 163
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y ++E QLPR+ D +ARY GL+RGQVVK+ E + + +YR
Sbjct: 164 YKLRETQLPRIQMADPVARYLGLKRGQVVKIVRRSETSGRYNSYR 208
[52][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
Length = 213
Score = 94.0 bits (232), Expect = 7e-18
Identities = 48/112 (42%), Positives = 77/112 (68%), Gaps = 3/112 (2%)
Frame = -3
Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
L+ IL+VQ +T+ A AI + ++E+F ++L+VN+T H L P+H+ LT ++K+
Sbjct: 102 LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRL 161
Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
LL++Y ++E QLPR+ +D +ARYYGL++GQV+K+ E +VTYR CV
Sbjct: 162 LLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213
[53][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8NU15_COPC7
Length = 273
Score = 93.6 bits (231), Expect = 9e-18
Identities = 46/105 (43%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I+I +TS A K I+ + +++E F DLLVN+T H L P+H+VL+ ++KK LL++
Sbjct: 166 IIIFPATMTSSARKVISAMASTYRLEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLER 225
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y +++ QLPR+ D +ARYYGL+RGQVVK+ E + + +YR
Sbjct: 226 YRLKDTQLPRIQPMDPVARYYGLRRGQVVKIIRPSETSGRYASYR 270
[54][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RWP8_OSTLU
Length = 205
Score = 93.2 bits (230), Expect = 1e-17
Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 4/109 (3%)
Frame = -3
Query: 533 ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
I++VQ +T Q+L F +E F+ T+LLVN+ HVL P+H +L+D QK+ LL
Sbjct: 97 IIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLD 156
Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
+Y +++ QLPR+ D IARYYG++RGQVV++ E +VTYR CV
Sbjct: 157 RYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 205
[55][TOP]
>UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi
RepID=Q4XTK3_PLACH
Length = 126
Score = 93.2 bits (230), Expect = 1e-17
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T A AI + +E F T+LLVN+TKH L PKH LT +K+NLL++
Sbjct: 19 ILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTSDEKRNLLQR 78
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y I+E +LPR+ D + RY+GL +GQVVK+ E +VTYR V
Sbjct: 79 YKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLV 125
[56][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
Length = 204
Score = 92.8 bits (229), Expect = 2e-17
Identities = 48/109 (44%), Positives = 72/109 (66%), Gaps = 4/109 (3%)
Frame = -3
Query: 533 ILIVQNQITS---QALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
I++VQ +T Q+L F +E F+ +LLVN+T HVL P+H +L+D+QK+ LL
Sbjct: 96 IIVVQQSLTPFARQSLLECQAQKFYIEQFQEAELLVNITDHVLVPEHILLSDEQKRVLLD 155
Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
+Y ++E QLPR+ D +ARY+G++RGQVV++ E +VTYR CV
Sbjct: 156 RYKVKETQLPRIQMHDPVARYFGMRRGQVVRIIRPSETAGRYVTYRLCV 204
[57][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
RepID=A3AV22_ORYSJ
Length = 217
Score = 92.0 bits (227), Expect = 3e-17
Identities = 50/119 (42%), Positives = 75/119 (63%), Gaps = 14/119 (11%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +++ A A+ ++ F +E+F+ +LLVN+ H L P+H++LT +QKK LL++
Sbjct: 98 ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157
Query: 359 YDIQEKQ------------LPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E Q LPR+ TD IARYYG++RGQVVK+ E +VTYR V
Sbjct: 158 YTVKETQILSLTQLVKCVNLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYV 216
[58][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8ID59_PLAF7
Length = 205
Score = 92.0 bits (227), Expect = 3e-17
Identities = 50/107 (46%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T A AI + +E F T+LLVN+TKH L P+H LT +KKNLL++
Sbjct: 98 ILVTQNILTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQR 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y I E +LPR+ D + RY+GL +GQVVK+ E +VTYR V
Sbjct: 158 YKIMENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLV 204
[59][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D9Y7_LACBS
Length = 208
Score = 92.0 bits (227), Expect = 3e-17
Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++ +T A K I + +++E F DLLVN+ H L P+H VL+ +KK LL+K
Sbjct: 101 IIVFPGNMTPSARKVIVAMAQQYRLEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEK 160
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y ++E QLPR+ D +ARYYGL+RGQVVK+T E + + +YR
Sbjct: 161 YRLKETQLPRIQLADPVARYYGLRRGQVVKITRPSETSGRYASYR 205
[60][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
RepID=C6K8L9_CAEBE
Length = 211
Score = 91.7 bits (226), Expect = 4e-17
Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + ++ I++VQ +T A ++I + + +E F +L+VN+T+H L P+H V+
Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++K LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 153 TSEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210
[61][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
strain H RepID=B3L6X3_PLAKH
Length = 205
Score = 91.7 bits (226), Expect = 4e-17
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T A AI + +E F T+LLVN+TKH L P+H LT +K+NLL++
Sbjct: 98 ILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQR 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y I+E +LPR+ D + RY+GL +GQVVK+ E +VTYR V
Sbjct: 158 YKIKENKLPRIQDVDPVCRYFGLAKGQVVKIIRPSETAGRYVTYRLV 204
[62][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
Length = 205
Score = 91.7 bits (226), Expect = 4e-17
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T A AI + +E F T+LLVN+TKH L P+H LT +K+NLL++
Sbjct: 98 ILVTQNTLTPFARDAIKEAAPRHIIENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQR 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y I+E +LPR+ D + RY+GL +GQVVK+ E +VTYR V
Sbjct: 158 YKIKENKLPRIQDVDPVCRYFGLAKGQVVKIIRPSETAGRYVTYRLV 204
[63][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MXV4_9CHLO
Length = 206
Score = 91.3 bits (225), Expect = 5e-17
Identities = 47/109 (43%), Positives = 73/109 (66%), Gaps = 4/109 (3%)
Frame = -3
Query: 533 ILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
I++VQ +T Q+L +F +E F+ +LLVN+T+HVL P+H +L+D +K+ LL
Sbjct: 98 IIVVQASLTPFAKQSLLECASQSFYIEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLA 157
Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
+Y +++ QLPR+ D +ARYYG++RGQVV++ E +VTYR CV
Sbjct: 158 RYKVKDTQLPRIQLHDPVARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 206
[64][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
Length = 206
Score = 91.3 bits (225), Expect = 5e-17
Identities = 45/105 (42%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++ ++ T A A+ + + +E F ++LLVN+T+HVL P+H++L+ +K+ LL +
Sbjct: 95 IMVTPSKFTPFAKSALEDMRPKYHIEHFLESELLVNITEHVLVPEHRILSPDEKRTLLDR 154
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y I+E QLPR+ +DA+ARY GLQRGQVV++ E +VTYR
Sbjct: 155 YKIKETQLPRIQASDAVARYLGLQRGQVVRIVRPSETAGRYVTYR 199
[65][TOP]
>UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium
RepID=Q5CNJ4_CRYHO
Length = 205
Score = 91.3 bits (225), Expect = 5e-17
Identities = 52/107 (48%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
ILI QN +T+ A AI K +E F +LLVN+TKH L PKH +L+D +K LL +
Sbjct: 98 ILISQNVLTAHAKVAILDAAPKHYIESFLENELLVNITKHELVPKHILLSDDEKLQLLDR 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y I+E QLPR+ D +ARY+GL +GQVVK+ E +VTYR V
Sbjct: 158 YKIKETQLPRIQYADPVARYFGLAKGQVVKIIRPSETAGRYVTYRLV 204
[66][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
theta RepID=Q98RN7_GUITH
Length = 214
Score = 90.9 bits (224), Expect = 6e-17
Identities = 41/115 (35%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQIT---SQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
+ + + +++I+ ++T QA+ +IN N +E F +L+VN+T H+L PKH++L+
Sbjct: 97 IKNEGFSRVLMILNGKLTPHAKQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILS 156
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
+ K+LL++Y I+ LP++L+ D +A+Y GLQR ++VK+T E + +TYR
Sbjct: 157 KNESKSLLERYSIKFDHLPKILKNDPVAKYLGLQRSEIVKITRVSETSGKFITYR 211
[67][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
Length = 210
Score = 90.9 bits (224), Expect = 6e-17
Identities = 46/116 (39%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
+ + +T I++VQ+ +T A +++ + + +E F ++LL+N+T+H L P+H V+T
Sbjct: 94 MQEENITRAIILVQSGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++KK LLKKY ++E QL R+ D +ARYYGL+RGQVVK+ E +++YR V
Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLV 209
[68][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XGH1_CAEBR
Length = 211
Score = 90.9 bits (224), Expect = 6e-17
Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + ++ I++VQ +T A ++I + + +E F +L+VN+T+H L P+H V+
Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++K LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210
[69][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
Length = 221
Score = 90.9 bits (224), Expect = 6e-17
Identities = 44/105 (41%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I+I +++ A K + + + +E F +DLLVN+TKH L PKH V+ ++K L+K+
Sbjct: 114 IIIWSEKMSPAAKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKR 173
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y ++E QLPR++ TD +A+YYGL+RGQV+K+ E ++TYR
Sbjct: 174 YRLKETQLPRIMITDPVAKYYGLKRGQVMKIERASETAGRYITYR 218
[70][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
Length = 211
Score = 90.9 bits (224), Expect = 6e-17
Identities = 45/118 (38%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + ++ I++VQ +T A ++I + + +E F +L+VN+T+H L P+H V+
Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++K LL +Y +++ QLPR+ Q D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLV 210
[71][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
Length = 210
Score = 90.5 bits (223), Expect = 8e-17
Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++V IT+ A A++ LN +E+F +L+ N+T+H L K+ VL D+ KK LL
Sbjct: 103 IVVVPMAITAPARMAVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNT 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y +Q+ QLPR+L TD +ARYYGL+RGQVVK+ + + + TYR
Sbjct: 163 YTVQDTQLPRILVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYR 207
[72][TOP]
>UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium
muris RN66 RepID=B6AE06_9CRYT
Length = 205
Score = 90.5 bits (223), Expect = 8e-17
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
ILI QN +T+ A AI K +E F +LLVN+T+H L PKH +L+D++K LL++
Sbjct: 98 ILISQNVLTAHAKVAILDAAPKHYIESFLENELLVNITRHELVPKHVLLSDEEKSQLLER 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E QLPR+ D +ARY+GL + QVVK+ E +VTYR V
Sbjct: 158 YKVKETQLPRIQHADPVARYFGLAKSQVVKIIRPSETAGRYVTYRLV 204
[73][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus clemensi RepID=C1C1G9_9MAXI
Length = 210
Score = 90.1 bits (222), Expect = 1e-16
Identities = 46/116 (39%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
+ + +T I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T
Sbjct: 94 MQEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++KK LLKKY ++E QL R+ D +ARYYGL+RGQVVK+ E +++YR V
Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLV 209
[74][TOP]
>UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus
RepID=Q6MY78_ASPFU
Length = 220
Score = 90.1 bits (222), Expect = 1e-16
Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
+ I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KKNLL++Y
Sbjct: 114 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 173
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 174 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 219
[75][TOP]
>UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus
RepID=B0XMP1_ASPFC
Length = 171
Score = 90.1 bits (222), Expect = 1e-16
Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
+ I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KKNLL++Y
Sbjct: 65 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 124
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 125 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 170
[76][TOP]
>UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL
Length = 179
Score = 90.1 bits (222), Expect = 1e-16
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I QN IT A K I + +E F+ TDL+VN+T H L PKH L ++KK LL++Y
Sbjct: 73 IFIYQNSITPSANKLIPTVQPASIETFQETDLIVNITHHELVPKHIKLNREEKKELLERY 132
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +ARY GL+RG+VVK+ E + + +YR
Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176
[77][TOP]
>UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D205_NEOFI
Length = 234
Score = 90.1 bits (222), Expect = 1e-16
Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
+ I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KKNLL++Y
Sbjct: 128 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 188 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233
[78][TOP]
>UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus
RepID=A1CP51_ASPCL
Length = 234
Score = 90.1 bits (222), Expect = 1e-16
Identities = 45/106 (42%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
+ I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KKNLL++Y
Sbjct: 128 VFITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRY 187
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 188 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233
[79][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
Length = 215
Score = 89.7 bits (221), Expect = 1e-16
Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I QN IT ALK + ++ +E F T L+VN+T H L PKH L+D++KK LLK+Y
Sbjct: 109 IFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
[80][TOP]
>UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA
Length = 202
Score = 89.4 bits (220), Expect = 2e-16
Identities = 36/84 (42%), Positives = 63/84 (75%)
Frame = -3
Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
+E F ++++N+T+H L PKH+VLT+ +K+ +LK+Y++ E QLPR+L+TD ++RY G++
Sbjct: 119 IEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVK 178
Query: 287 RGQVVKVTYTGEITQMHVTYRCVW 216
GQ++K+T + +VTYR V+
Sbjct: 179 PGQLLKITRNSDTAGHYVTYRLVY 202
[81][TOP]
>UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG
Length = 214
Score = 89.4 bits (220), Expect = 2e-16
Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLT 390
+I ++ TG I I QN IT A K I ++ + E F+ +DL+VN+T H L PKH L+
Sbjct: 98 RIQEKNFSTG-IFIYQNNITPSANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLS 156
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
D +K LL++Y ++E QLPR+ + D +ARY GL+RGQVVK+ E + + +YR
Sbjct: 157 DGEKSQLLQRYKLKESQLPRIQREDPVARYLGLKRGQVVKIIRRSETSGRYASYR 211
[82][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
Length = 214
Score = 89.4 bits (220), Expect = 2e-16
Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
I ++ TG I I QN +T A K I ++ +EIF+ DL+VN+T H L PKH L
Sbjct: 99 ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNH 157
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+ E + + +YR
Sbjct: 158 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211
[83][TOP]
>UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Yarrowia lipolytica RepID=RPAB1_YARLI
Length = 212
Score = 89.4 bits (220), Expect = 2e-16
Identities = 45/104 (43%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
IL+ +N +T A + I ++ ++ F+ TDLLVN+TKHVL P H L+ +KK LL++Y
Sbjct: 106 ILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERY 165
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +ARY GL+RGQ+VK+ E + + +YR
Sbjct: 166 RLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209
[84][TOP]
>UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans
RepID=Q59PF3_CANAL
Length = 179
Score = 89.0 bits (219), Expect = 2e-16
Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
I ++ TG I I QN +T A K I ++ +EIF+ DL+VN+T H L PKH L
Sbjct: 64 ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNR 122
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+ E + + +YR
Sbjct: 123 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 176
[85][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MBX4_CANTT
Length = 214
Score = 89.0 bits (219), Expect = 2e-16
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTD 387
I ++ TGL I QN IT A K I ++ V EIF+ +DL+VN+T H L PKH L+
Sbjct: 99 ITEKNFSTGLF-IYQNSITPSANKLIPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSK 157
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
+K LL++Y ++E QLPR+ + D +ARY GL+RG+VVK+ E + + +YR
Sbjct: 158 DEKVELLERYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
[86][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
albicans RepID=C4YG42_CANAL
Length = 214
Score = 89.0 bits (219), Expect = 2e-16
Identities = 48/114 (42%), Positives = 72/114 (63%), Gaps = 1/114 (0%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
I ++ TG I I QN +T A K I ++ +EIF+ DL+VN+T H L PKH L
Sbjct: 99 ITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNR 157
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++KK LL +Y ++E QLPR+ + D +ARY GL+RG++VK+ E + + +YR
Sbjct: 158 EEKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211
[87][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Babesia bovis RepID=A7APR4_BABBO
Length = 205
Score = 88.6 bits (218), Expect = 3e-16
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T A AI + +E F T+LLVN+TKH L PKH LT +K+ LL++
Sbjct: 98 ILVTQNVLTPFAKDAILEAAPRNIIENFLETELLVNITKHELVPKHIPLTADEKQTLLQR 157
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
Y ++E Q+PR+ D +ARY+GL +GQVVK+ E +VT+R V+
Sbjct: 158 YKVKESQIPRIQAADPVARYFGLTKGQVVKIIRPSETAGRYVTFRLVY 205
[88][TOP]
>UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4QW70_MAGGR
Length = 259
Score = 88.6 bits (218), Expect = 3e-16
Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNF---KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
IL+ Q ++S A +A++ KVE F + DLLVN+T H L PKH +L+ +KK LL+
Sbjct: 122 ILVTQGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLE 181
Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
+Y ++E QLPR+ D +ARY GLQRG VVK+ E + +YR
Sbjct: 182 RYRLKETQLPRIQTKDPVARYLGLQRGNVVKIIRHSETAGRYASYR 227
[89][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
Length = 210
Score = 88.6 bits (218), Expect = 3e-16
Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
ILI N +T A K I + F +E F+ +DL+VN+T H L PKH +L+ +KK LL +
Sbjct: 103 ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y ++E QLPR+ D +ARY GL+RG+VVK+ E + + +YR
Sbjct: 163 YKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYR 207
[90][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
intestinalis RepID=UPI000180C3C9
Length = 210
Score = 88.2 bits (217), Expect = 4e-16
Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + + I++VQ +T A +++ + + +E F +LL+N+T+H L P+H VL
Sbjct: 92 QRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPKYILEQFLEQELLINITEHELVPEHVVL 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++K LL +Y +++ QLPR+ D +ARY+GL+RGQVVK+ E +VTYR V
Sbjct: 152 TPEEKSELLTRYKLKDHQLPRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYVTYRLV 209
[91][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=1 Tax=Entamoeba dispar SAW760
RepID=B0EA74_ENTDI
Length = 204
Score = 88.2 bits (217), Expect = 4e-16
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = -3
Query: 446 DLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKV 267
+L+VNVT HVL P+H +L+ ++K+ LLKKY ++E QLPR+L +D I++YYG QRG VVK+
Sbjct: 128 ELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187
Query: 266 TYTGEITQMHVTYRCVW 216
E +VTYR V+
Sbjct: 188 IRKSETAGRYVTYRAVF 204
[92][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
HM-1:IMSS RepID=C4LW54_ENTHI
Length = 204
Score = 87.8 bits (216), Expect = 5e-16
Identities = 39/77 (50%), Positives = 57/77 (74%)
Frame = -3
Query: 446 DLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKV 267
+L+VNVT H+L P+H +L+ ++K+ LLKKY ++E QLPR+L +D I++YYG QRG VVK+
Sbjct: 128 ELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187
Query: 266 TYTGEITQMHVTYRCVW 216
E +VTYR V+
Sbjct: 188 IRKSETAGRYVTYRAVF 204
[93][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S3Q9_TRIAD
Length = 210
Score = 87.8 bits (216), Expect = 5e-16
Identities = 43/118 (36%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + R+ + I+I+Q+ +T A +++ + + +E F ++L++N+T+H L PKH V+
Sbjct: 92 QRMQRENINRAIIIIQSGMTPTAKQSLIDMAPKYTLESFMESELMINITEHHLVPKHIVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+ ++K LL +Y ++E QLPR+ D +ARYYGL+RGQ V++ E ++TYR V
Sbjct: 152 SPEEKAELLARYKLKEHQLPRIQVGDPVARYYGLKRGQFVRIIRPSETAGRYITYRLV 209
[94][TOP]
>UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR
Length = 234
Score = 87.8 bits (216), Expect = 5e-16
Identities = 49/108 (45%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I I +++QA K +++ + +VE F DLLVN+T H L PKH +L+ ++K LLK+
Sbjct: 127 IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKR 186
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
Y ++E QLPR+L D IARY GL+RGQVVK+ E + +YR CV
Sbjct: 187 YRLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234
[95][TOP]
>UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4
RepID=UPI00004E3EE0
Length = 181
Score = 87.4 bits (215), Expect = 7e-16
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN----FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLL 366
I++VQ IT A +A+ + +E F +LLVN+T H L PKH +LT ++K LL
Sbjct: 72 IIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELL 131
Query: 365 KKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
+Y ++E QLPR+ D +ARYYGL RG VVK+ E ++TYR CV
Sbjct: 132 TRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 181
[96][TOP]
>UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2H038_CHAGB
Length = 220
Score = 87.4 bits (215), Expect = 7e-16
Identities = 48/108 (44%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ +++QA K + + + +E F DLLVN+T H L PKH +L+ ++K LLK+
Sbjct: 113 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKR 172
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
Y ++E QLPR+L D IARY GL++GQVVK+ T E + +YR CV
Sbjct: 173 YRLKETQLPRILSKDPIARYLGLKKGQVVKIIRTSETAGRYASYRLCV 220
[97][TOP]
>UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1
Tax=Dictyostelium discoideum RepID=RPAB1_DICDI
Length = 197
Score = 87.4 bits (215), Expect = 7e-16
Identities = 48/110 (43%), Positives = 67/110 (60%), Gaps = 5/110 (4%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN----FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLL 366
I++VQ IT A +A+ + +E F +LLVN+T H L PKH +LT ++K LL
Sbjct: 88 IIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHILLTKEEKLELL 147
Query: 365 KKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
+Y ++E QLPR+ D +ARYYGL RG VVK+ E ++TYR CV
Sbjct: 148 TRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 197
[98][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
RepID=A6N9W6_ORNPR
Length = 210
Score = 87.0 bits (214), Expect = 9e-16
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T I++VQ +T A +A+ + + +E F ++LL+N+T+H L P+H VL
Sbjct: 92 QRMQEENITRAIIVVQQGMTPSAKQALTDMAPKYILEYFLESELLINITEHELVPEHVVL 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++K LL +Y ++E L R+ D +ARY+GL+RGQVVK+ E +++YR V
Sbjct: 152 TPEEKAELLARYKLKENHLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[99][TOP]
>UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN
Length = 219
Score = 87.0 bits (214), Expect = 9e-16
Identities = 45/106 (42%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++KK LL +Y
Sbjct: 113 IFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRY 172
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 173 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 218
[100][TOP]
>UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7Z7I7_NECH7
Length = 234
Score = 86.7 bits (213), Expect = 1e-15
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = -3
Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291
K+E F DLLVN+T H L PKH +L+ +K LLK+Y ++E QLPR+LQ D +ARY GL
Sbjct: 150 KIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYRLKETQLPRILQRDPVARYLGL 209
Query: 290 QRGQVVKVTYTGEITQMHVTYR-CV 219
+RGQVVK+ E + +YR CV
Sbjct: 210 KRGQVVKIIRNSETAGRYASYRLCV 234
[101][TOP]
>UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2VUN9_PYRTR
Length = 235
Score = 86.3 bits (212), Expect = 2e-15
Identities = 40/83 (48%), Positives = 59/83 (71%)
Frame = -3
Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
VE+F DLLVN+TKH L PKH +L+D++K+ LL++Y +++ QLPR+ TD +A+Y GL+
Sbjct: 152 VEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLR 211
Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219
RG VVK+ E + +YR V
Sbjct: 212 RGSVVKIIRKSETAGRYASYRWV 234
[102][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
Length = 213
Score = 86.3 bits (212), Expect = 2e-15
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I QN IT A K I ++ +E F+ DL+VN+T H L PKH L+ +KK LL +Y
Sbjct: 107 IFIYQNSITPSANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRY 166
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +ARY GL+RG+VVK+ E + + +YR
Sbjct: 167 RLKESQLPRVQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 210
[103][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186E78B
Length = 210
Score = 85.9 bits (211), Expect = 2e-15
Identities = 42/118 (35%), Positives = 77/118 (65%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + + I++VQ +T A ++++ + + +E F ++LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPKYILEQFLESELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++K+ LL++Y ++E QL R+ D +ARY+GL+RGQVVK+ E +++YR V
Sbjct: 152 TPEEKQELLQRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYISYRLV 209
[104][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
RepID=UPI000056951D
Length = 211
Score = 85.9 bits (211), Expect = 2e-15
Identities = 43/118 (36%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 93 QRMQEENITRAVIVVQTGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 152
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ +D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 153 TKEEVTELLARYKLKETQLPRIQCSDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 210
[105][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
Length = 210
Score = 85.9 bits (211), Expect = 2e-15
Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T + LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[106][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BIS3_OSMMO
Length = 210
Score = 85.9 bits (211), Expect = 2e-15
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 TKEELSELLTRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[107][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
Tax=Euteleostei RepID=B5X957_SALSA
Length = 210
Score = 85.9 bits (211), Expect = 2e-15
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T ++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ Q D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQQGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[108][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
Length = 210
Score = 85.9 bits (211), Expect = 2e-15
Identities = 44/118 (37%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + +T+T I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H VL
Sbjct: 92 QRMQEETITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T +K+ LL +Y ++E QL R+ D ++RY+GL+RGQVVK+ E +++YR V
Sbjct: 152 TPDEKQELLCRYKLKENQLMRIQVGDPVSRYFGLKRGQVVKIVRNSETAGRYISYRLV 209
[109][TOP]
>UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE
Length = 224
Score = 85.9 bits (211), Expect = 2e-15
Identities = 41/87 (47%), Positives = 59/87 (67%)
Frame = -3
Query: 485 NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 306
++ + E+F DL+ +VTKH L P+H +L DK+K+ LLKKY + + QLPR+LQ+D IA
Sbjct: 135 SIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPRILQSDPIA 194
Query: 305 RYYGLQRGQVVKVTYTGEITQMHVTYR 225
R+ GL G VVK+ E ++VTYR
Sbjct: 195 RFLGLHHGDVVKIIRKSETAGLYVTYR 221
[110][TOP]
>UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina
RepID=B2AZ24_PODAN
Length = 235
Score = 85.9 bits (211), Expect = 2e-15
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ +++QA K + + + +E F DLLVN+T H L P H +L+ ++K LLK+
Sbjct: 128 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKR 187
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
Y ++E QLPR+LQ D IARY GL+RGQVVK+ E + +YR CV
Sbjct: 188 YRLKETQLPRILQKDPIARYLGLKRGQVVKIVRISETAGRYASYRLCV 235
[111][TOP]
>UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia
guilliermondii RepID=A5DHL4_PICGU
Length = 179
Score = 85.9 bits (211), Expect = 2e-15
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I QN IT A K + + +E F+ +DL+VN+T H L PKH L+ +KK LL +Y
Sbjct: 73 IFIYQNSITPSANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIKLSIGEKKELLARY 132
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +ARY GL+RG+VVK+ E + + +YR
Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176
[112][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
rerio RepID=Q6DEG5_DANRE
Length = 210
Score = 85.5 bits (210), Expect = 3e-15
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[113][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
Length = 210
Score = 85.5 bits (210), Expect = 3e-15
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[114][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3ZQF0_BRAFL
Length = 210
Score = 85.5 bits (210), Expect = 3e-15
Identities = 43/116 (37%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + ++ I++VQ +T A +A+ + + +E F ++LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENISRAIIVVQMGMTPSAKQALVDMAPKYILEQFLESELLINITEHQLVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
T ++K LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E +++YR
Sbjct: 152 TPEEKAELLARYRLKEHQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYR 207
[115][TOP]
>UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4
Length = 287
Score = 85.5 bits (210), Expect = 3e-15
Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q IT A K I ++ +E+F+ +DL+VN+T H L PKH L+ +KK LL +Y
Sbjct: 181 IFIYQTSITPSANKLIPTVSPATIEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRY 240
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +ARY GL+RG VVK+ E + + +YR
Sbjct: 241 RLKESQLPRIQREDPVARYLGLKRGDVVKIIRRSETSGRYASYR 284
[116][TOP]
>UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) =
Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS
513.88 RepID=A2QAL5_ASPNC
Length = 235
Score = 85.5 bits (210), Expect = 3e-15
Identities = 43/106 (40%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
+ I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ +K LL++Y
Sbjct: 129 VFITQTPISPSAVRLLSSMPGRICEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLERY 188
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 189 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYRWV 234
[117][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
Tax=Murinae RepID=RPAB1_MOUSE
Length = 210
Score = 85.5 bits (210), Expect = 3e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
[118][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide E, 25kDa n=1 Tax=Pan troglodytes
RepID=UPI0000E24E5A
Length = 230
Score = 85.1 bits (209), Expect = 3e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 112 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 171
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V
Sbjct: 172 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 229
[119][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
Tax=Neognathae RepID=B5FX59_TAEGU
Length = 210
Score = 85.1 bits (209), Expect = 3e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
[120][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
RepID=Q28HF5_XENTR
Length = 210
Score = 85.1 bits (209), Expect = 3e-15
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T + LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[121][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
Length = 207
Score = 85.1 bits (209), Expect = 3e-15
Identities = 42/118 (35%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + ++ +++VQ +T A +A+ + + +E F +L++N+T+H L P+H ++
Sbjct: 89 QRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILEQFVEAELMINITEHELVPEHVLM 148
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T +K+ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 149 TPDEKQELLLRYKLKEHQLPRIQSGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 206
[122][TOP]
>UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE
Length = 223
Score = 85.1 bits (209), Expect = 3e-15
Identities = 40/87 (45%), Positives = 59/87 (67%)
Frame = -3
Query: 485 NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIA 306
++ + E+F DL+ +VTKH L P+H +L D++K+ LLKKY + + QLPR+LQ+D IA
Sbjct: 134 SIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGLVDNQLPRILQSDPIA 193
Query: 305 RYYGLQRGQVVKVTYTGEITQMHVTYR 225
R+ GL G VVK+ E ++VTYR
Sbjct: 194 RFLGLHHGDVVKIIRKSETAGLYVTYR 220
[123][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DNB3_LACTC
Length = 215
Score = 85.1 bits (209), Expect = 3e-15
Identities = 42/104 (40%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I + QN +T A+K + ++ +E F L+VN+T H L PKH L+D++KK LL++Y
Sbjct: 109 IFVYQNGVTPSAMKLLPSVAPATIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRY 168
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +A Y GL+RG VVK+ E + + +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGDVVKIIRKSETSGRYASYR 212
[124][TOP]
>UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6HAG0_PENCW
Length = 234
Score = 85.1 bits (209), Expect = 3e-15
Identities = 44/106 (41%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++K LL++Y
Sbjct: 128 IFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERY 187
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 188 RLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 233
[125][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TEH4_VANPO
Length = 215
Score = 85.1 bits (209), Expect = 3e-15
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I + Q +T A+K + ++ +E F L+VN+T H L PKH L++ +KK LLKKY
Sbjct: 109 IFVYQTNVTPSAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKY 168
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
[126][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Pongo abelii RepID=RPAB1_PONAB
Length = 210
Score = 85.1 bits (209), Expect = 3e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
[127][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Homo sapiens RepID=RPAB1_HUMAN
Length = 210
Score = 85.1 bits (209), Expect = 3e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
[128][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Bos taurus RepID=RPAB1_BOVIN
Length = 210
Score = 85.1 bits (209), Expect = 3e-15
Identities = 42/118 (35%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
[129][TOP]
>UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023E584
Length = 253
Score = 84.7 bits (208), Expect = 4e-15
Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Frame = -3
Query: 563 IVNRDTLTGLIL--IVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLT 390
+++ + TG+++ + + ++L ++ L K+E F DLLVN+T H L PKH +L+
Sbjct: 122 VISNNYKTGIMITHVPLSPAARRSLASVESLA-KIECFLEDDLLVNITHHELVPKHVLLS 180
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++K LLK+Y ++E QLPR+LQ D +ARY GL+RG VVK+ E + +YR
Sbjct: 181 REEKIALLKRYRLKETQLPRILQKDPVARYLGLKRGHVVKIIRNSETAGRYASYR 235
[130][TOP]
>UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2
Tax=Emericella nidulans RepID=C8VQY1_EMENI
Length = 235
Score = 84.7 bits (208), Expect = 4e-15
Identities = 43/106 (40%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I + I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+ ++K LL++Y
Sbjct: 129 IFITKTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRY 188
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 189 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 234
[131][TOP]
>UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces
dermatitidis RepID=C5G7M7_AJEDR
Length = 236
Score = 84.7 bits (208), Expect = 4e-15
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFISQTPISPSAIRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
[132][TOP]
>UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4VBP1_NOSCE
Length = 204
Score = 84.7 bits (208), Expect = 4e-15
Identities = 36/106 (33%), Positives = 68/106 (64%)
Frame = -3
Query: 536 LILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
LIL++ +++S + +N+ + K+EIF+ +L+ N+TKHV P+H++L D +K ++L+K
Sbjct: 91 LILVINQKMSSASQNIVNVSDLKIEIFKDEELMFNITKHVSVPRHRILNDTEKNSILEKL 150
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
I Q+P++L+ D + R+ G + GQVV++T + Y+ V
Sbjct: 151 KITVDQMPKILKRDPVCRFLGAESGQVVEITRKSRTAGESIFYKVV 196
[133][TOP]
>UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8N6W2_ASPFN
Length = 171
Score = 84.7 bits (208), Expect = 4e-15
Identities = 44/116 (37%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTD 387
+V+ + + I Q I+ A++ ++ + ++ E F+ DLLVN+T+H L PKH +L+
Sbjct: 55 VVDENNFHTGVFITQTPISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSP 114
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++K LL +Y ++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 115 EEKAKLLARYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYRWV 170
[134][TOP]
>UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QBA8_PENMQ
Length = 172
Score = 84.7 bits (208), Expect = 4e-15
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I + I+ A++ +N + E F+ +DLLVN+T H L PKH +L+ ++K LL++Y
Sbjct: 66 IFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 125
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 126 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 171
[135][TOP]
>UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QBA7_PENMQ
Length = 236
Score = 84.7 bits (208), Expect = 4e-15
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I + I+ A++ +N + E F+ +DLLVN+T H L PKH +L+ ++K LL++Y
Sbjct: 130 IFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 189
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 235
[136][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000587A08
Length = 210
Score = 84.3 bits (207), Expect = 6e-15
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T I+ VQ ++T A ++ + + +E F +LL+N+T+H P+H V+
Sbjct: 92 QRMQEENITRAIITVQEKMTPSAKTSLGDMAPKYILEQFLEAELLINITEHDFVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++K LL +Y +++ QLPR+ D +ARY+GL+RGQVVK+ E +++YR V
Sbjct: 152 TGEEKAELLARYKLKDHQLPRIQVGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[137][TOP]
>UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B4DJ89_HUMAN
Length = 117
Score = 84.3 bits (207), Expect = 6e-15
Identities = 41/116 (35%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
+ + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+T
Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V
Sbjct: 61 EEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 116
[138][TOP]
>UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb01 RepID=C1GUJ0_PARBA
Length = 236
Score = 84.3 bits (207), Expect = 6e-15
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
[139][TOP]
>UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb18 RepID=C1FYH2_PARBD
Length = 236
Score = 84.3 bits (207), Expect = 6e-15
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
[140][TOP]
>UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb03 RepID=C0S407_PARBP
Length = 171
Score = 84.3 bits (207), Expect = 6e-15
Identities = 44/106 (41%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 65 IFISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 124
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 125 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 170
[141][TOP]
>UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
RepID=C0NL28_AJECG
Length = 236
Score = 84.3 bits (207), Expect = 6e-15
Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I + Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYRWV 235
[142][TOP]
>UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN
Length = 236
Score = 84.3 bits (207), Expect = 6e-15
Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I + Q I+ A++ +N + + E F+ +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFVSQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYRWV 235
[143][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5DLP1_DROPS
Length = 320
Score = 84.0 bits (206), Expect = 7e-15
Identities = 43/105 (40%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+V++ +T A ++I + + +E F ++L +NVTKH L P+H VL++ +KK L +
Sbjct: 103 ILVVRDCLTPPAKQSIMAMAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRC 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y ++E Q+ RML +D +ARYYGL+ GQVVK+ E +++YR
Sbjct: 163 YRLKESQMMRMLSSDPVARYYGLKPGQVVKIVRASESAGKYISYR 207
[144][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
vitripennis RepID=UPI00015B5456
Length = 210
Score = 83.6 bits (205), Expect = 1e-14
Identities = 43/118 (36%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + + I++VQ+ +T A +++ + + +E F ++LL+N+T+H L P+H VL
Sbjct: 92 QRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T +K+ LL +Y ++E QL R+ D +ARY+GL+RGQVVK+ E +++YR V
Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQANDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[145][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
Length = 210
Score = 83.6 bits (205), Expect = 1e-14
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T I++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+ ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 SKEEVVELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[146][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Esox lucius RepID=C1BZT4_ESOLU
Length = 210
Score = 83.6 bits (205), Expect = 1e-14
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T ++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[147][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Salmo salar RepID=B5X8S7_SALSA
Length = 210
Score = 83.6 bits (205), Expect = 1e-14
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T ++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D +ARY+GL+RGQVVK+ E ++TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[148][TOP]
>UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum
canis CBS 113480 RepID=C5FC74_NANOT
Length = 236
Score = 83.2 bits (204), Expect = 1e-14
Identities = 44/117 (37%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLT 390
Q +++ I I Q+ I+ A++ + + + E F +LLVN+T H L PKH +L+
Sbjct: 119 QFIDQQNYHAGIFITQSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLS 178
Query: 389 DKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++KK LL++Y ++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 179 AEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
[149][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
Length = 215
Score = 83.2 bits (204), Expect = 1e-14
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I + QN IT A+K + ++ +E F L+VN+T H L PKH L+ +K+ LLK+Y
Sbjct: 109 IFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
[150][TOP]
>UniRef100_A2DEU9 RNA polymerase Rpb5, C-terminal domain containing protein n=1
Tax=Trichomonas vaginalis G3 RepID=A2DEU9_TRIVA
Length = 217
Score = 82.8 bits (203), Expect = 2e-14
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Frame = -3
Query: 545 LTGLILIVQN----QITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
+T LIL+ Q I + K + L+ K+E F + +L N+T H PKH+VL++++K
Sbjct: 104 ITHLILVHQEGSLAHIFDRIKKQLRLIGKKLETFTLQELQYNITMHFFVPKHKVLSNEEK 163
Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
L +Y I E +LP++L TD + RYYG G ++++T E VTYR V
Sbjct: 164 NELFNRYKIDETKLPQILSTDPVVRYYGADPGAIIEITRRSETCGRVVTYRLV 216
[151][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DR69_ZYGRC
Length = 215
Score = 82.8 bits (203), Expect = 2e-14
Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I + QN +T A+K + ++ +E F L+VN+T H L PKH ++ +K+ LLK+Y
Sbjct: 109 IFVYQNNVTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRY 168
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +A Y GL+RG+VVK+ E + + +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
[152][TOP]
>UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500
RepID=B8M3B9_TALSN
Length = 236
Score = 82.8 bits (203), Expect = 2e-14
Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I + I+ A++ ++ + E F+ +DLLVN+T H L PKH +L+ ++K LL++Y
Sbjct: 130 IFITRTAISPSAMRLLSSAVGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERY 189
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ +D +ARY GL+RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWV 235
[153][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
Length = 214
Score = 82.8 bits (203), Expect = 2e-14
Identities = 44/104 (42%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q+ IT A K I ++ +E F+ DL+VN+T H L PKH L +KK LL++Y
Sbjct: 108 IFIYQSSITPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERY 167
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D + RY GL+RG+VVK+ E + + +YR
Sbjct: 168 RLKESQLPRIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211
[154][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Candida glabrata RepID=RPAB1_CANGA
Length = 215
Score = 82.8 bits (203), Expect = 2e-14
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I QN IT A+K + ++ +E F L+VN+T H L PKH L +++K LLK+Y
Sbjct: 109 IFIYQNNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRY 168
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++E QLPR+ + D +A Y GL+RG+VVK+ E + +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212
[155][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
RepID=UPI00003C0CAC
Length = 210
Score = 82.4 bits (202), Expect = 2e-14
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + + I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H VL
Sbjct: 92 QRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T +K+ LL +Y ++E QL R+ D +ARY+GL+RGQVVK+ E +++YR V
Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[156][TOP]
>UniRef100_Q24FV0 RNA polymerase Rpb5, C-terminal domain containing protein n=1
Tax=Tetrahymena thermophila SB210 RepID=Q24FV0_TETTH
Length = 275
Score = 82.4 bits (202), Expect = 2e-14
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = -3
Query: 473 FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYG 294
+K EIF DL++N+TKH L PKH L +KK L+ KY I + QLP++L TD I +Y+G
Sbjct: 190 YKYEIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFG 249
Query: 293 LQRGQVVKVTYTGEITQMHVTYRCV 219
L+ QV K+ E ++TYR V
Sbjct: 250 LRTKQVFKIERDSETAGKYITYRIV 274
[157][TOP]
>UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
VaMs.102 RepID=C9S900_9PEZI
Length = 231
Score = 82.4 bits (202), Expect = 2e-14
Identities = 44/105 (41%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAI-NLLNF-KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++ + +TS K + +L +F ++E F DLLVN+T H L PKH +L+ +K LLK+
Sbjct: 124 IMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKR 183
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
Y ++E QLPR+ + D +ARY GL+RG VVK+ E + +YR
Sbjct: 184 YRLKETQLPRIKREDPVARYLGLKRGNVVKIIRNSETAGRYASYR 228
[158][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LUR5_ARATH
Length = 178
Score = 81.6 bits (200), Expect = 4e-14
Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Frame = -3
Query: 548 TLTGLILIVQN--QITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQ 381
T+ IL+VQ+ + QAL + + F +E+F+ +L+VNV +HV P+HQ LT ++
Sbjct: 64 TMIRAILVVQDIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEE 123
Query: 380 KKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
K+ L++ + LPR+ TD IARY+GL+RG+VVK++ E + ++TYR V
Sbjct: 124 KQKFLERKRTRFVVLPRIHVTDPIARYFGLKRGEVVKISRLSETSGRYITYRYV 177
[159][TOP]
>UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UZB4_PHANO
Length = 277
Score = 81.3 bits (199), Expect = 5e-14
Identities = 45/112 (40%), Positives = 68/112 (60%), Gaps = 7/112 (6%)
Frame = -3
Query: 533 ILIVQNQITSQALK----AINLLNFK---VEIFRITDLLVNVTKHVLKPKHQVLTDKQKK 375
I++ IT A++ A NL + +E+F DLLVN+TKH L PKH +L+ ++K
Sbjct: 165 IMVTVKPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKA 224
Query: 374 NLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
LL +Y ++E QLPR+ TD +A++ GL+RG VVK+ E + +YR V
Sbjct: 225 QLLTRYRLKETQLPRIQSTDPVAKFLGLRRGSVVKIIRKSETAGRYASYRWV 276
[160][TOP]
>UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RKX0_PLAYO
Length = 112
Score = 80.9 bits (198), Expect = 6e-14
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFK--VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+ QN +T A AI + +E F T+LLVN+TKH L PKH LT +K+NLL++
Sbjct: 19 ILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTSDEKRNLLQR 78
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVK 270
Y I+E +LPR+ D + RY+GL +GQV K
Sbjct: 79 YKIKENKLPRIQDVDPVCRYFGLSKGQVQK 108
[161][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
Length = 210
Score = 80.9 bits (198), Expect = 6e-14
Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[162][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
Length = 215
Score = 80.9 bits (198), Expect = 6e-14
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
I ++ TG I I Q+ IT A K + +E F L+VN+T H L PKH L+D
Sbjct: 100 ITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSD 158
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
+KK LLK+Y ++E QLPR+ + D +A Y GL+RG+V+K+ E + + +YR
Sbjct: 159 AEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
[163][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D56A05
Length = 210
Score = 80.5 bits (197), Expect = 8e-14
Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E L R+ D +ARY+GL+RGQVVK+ E +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[164][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
Length = 210
Score = 80.5 bits (197), Expect = 8e-14
Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[165][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
Length = 210
Score = 80.5 bits (197), Expect = 8e-14
Identities = 40/107 (37%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[166][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
Length = 210
Score = 80.5 bits (197), Expect = 8e-14
Identities = 39/116 (33%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Frame = -3
Query: 551 DTLTGLILIVQNQITSQALKAINLL-----NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
D L I++ Q ++ A I++L + VE F +L+ NVT+H L P H++L +
Sbjct: 91 DNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVETFAEAELVYNVTRHHLVPHHEILKE 150
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+K+ LL++Y + E +LP++ D + RY+G Q+GQV+++ + + +VTYR V
Sbjct: 151 SEKQQLLERYCVSEDRLPQIQPNDPVCRYFGAQKGQVLRIVRSSQTAGRYVTYRIV 206
[167][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
Length = 210
Score = 80.1 bits (196), Expect = 1e-13
Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E L R+ D +ARY+GL+RGQVVK+ E +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRASETAGRYISYRLV 209
[168][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
Length = 210
Score = 80.1 bits (196), Expect = 1e-13
Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T + K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[169][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
Length = 210
Score = 80.1 bits (196), Expect = 1e-13
Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T + K+ LL +
Sbjct: 103 IVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E L R+ D +ARY+GL+RGQVVK+ + E +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[170][TOP]
>UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides
RepID=C5PAC2_COCP7
Length = 236
Score = 80.1 bits (196), Expect = 1e-13
Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q+ I+ A++ + + + E F +LLVN+T H L PKH +L+ ++KK LL++Y
Sbjct: 130 IFITQSPISPSAIRLLTGIPGRFCEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 190 RLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 235
[171][TOP]
>UniRef100_Q4YN14 Putative uncharacterized protein n=1 Tax=Plasmodium berghei
RepID=Q4YN14_PLABE
Length = 117
Score = 79.7 bits (195), Expect = 1e-13
Identities = 36/74 (48%), Positives = 51/74 (68%)
Frame = -3
Query: 440 LVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTY 261
+VN+TKH L P+H LT +K+NLL++Y I+E +LPR+ D + RY+GL +GQVVK+
Sbjct: 16 VVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIR 75
Query: 260 TGEITQMHVTYRCV 219
E +VTYR V
Sbjct: 76 PSETAGRYVTYRLV 89
[172][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
RepID=B0X7A5_CULQU
Length = 210
Score = 79.3 bits (194), Expect = 2e-13
Identities = 40/107 (37%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
I++VQ +T A +++ + + +E F ++LL+N+T+H L P+H V+T ++K+ LL +
Sbjct: 103 IVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTPEEKQELLAR 162
Query: 359 YDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y ++E L R+ D +ARY+GL+RGQVVK+ E +++YR V
Sbjct: 163 YKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[173][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
Length = 215
Score = 79.3 bits (194), Expect = 2e-13
Identities = 45/114 (39%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = -3
Query: 563 IVNRDTLTGLILIVQNQITSQALKAI-NLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
I ++ TG I I Q+ IT A K + +E F L+VN+T H L PKH L++
Sbjct: 100 ITEKNFQTG-IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSE 158
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
+KK LLK+Y ++E QLPR+ + D +A Y GL+RG+V+K+ E + + +YR
Sbjct: 159 AEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
[174][TOP]
>UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE
Length = 239
Score = 79.0 bits (193), Expect = 2e-13
Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLNFKV-EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY 357
I I Q+ I+ A++ + + + E F +LLVN+T H L PKH +L+ ++KK LL +Y
Sbjct: 133 IFITQSPISPSAVRLLTGIPGRFCEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHRY 192
Query: 356 DIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
++E QLPR+ D +A+Y GL+RGQVVK+ E + +YR V
Sbjct: 193 RLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYRWV 238
[175][TOP]
>UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi
RepID=Q8T1Q5_TRYCR
Length = 219
Score = 78.6 bits (192), Expect = 3e-13
Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Frame = -3
Query: 536 LILIVQ---NQITSQALKAINL--LNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
+I++VQ N I + ++ IN L K+++F DL+VN+T H L PKH L D++ K
Sbjct: 108 VIIVVQGRINAIVKRHVEDINRSSLGLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167
Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+L+ + ++ LPR+L TD +A Y GL+RG+VV++ +VTYR V
Sbjct: 168 MLQAHALELSALPRILSTDPVAAYLGLERGRVVRIERKSMSAGFYVTYRQV 218
[176][TOP]
>UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
braziliensis RepID=A4H9I9_LEIBR
Length = 239
Score = 78.6 bits (192), Expect = 3e-13
Identities = 37/86 (43%), Positives = 58/86 (67%)
Frame = -3
Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297
+ + E+F +L VN+T H L PKH L++++ K++L + ++ QLPR+L TD +ARYY
Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVLHAHALELHQLPRILSTDPVARYY 212
Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219
GL+RGQVV++ ++VTYR V
Sbjct: 213 GLKRGQVVRIERKSMSAGLYVTYRQV 238
[177][TOP]
>UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE
Length = 176
Score = 78.2 bits (191), Expect = 4e-13
Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = -3
Query: 464 EIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQR 285
+ F +L+VNVTKH L PKH + T ++K LL++Y ++E+QLPR+ TD IARY GL+R
Sbjct: 93 DFFEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIKVTDPIARYLGLKR 152
Query: 284 GQVVKVTYTGEITQ-MHVTYRCVW 216
GQVVK+ T +V+YR V+
Sbjct: 153 GQVVKIIRENSPTAGRYVSYRLVF 176
[178][TOP]
>UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major
RepID=Q4QDW4_LEIMA
Length = 239
Score = 77.8 bits (190), Expect = 5e-13
Identities = 36/86 (41%), Positives = 58/86 (67%)
Frame = -3
Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297
+ + E+F +L VN+T H L PKH L++++ +++L + ++ QLPR+L TD +ARYY
Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVLHAHALELNQLPRILSTDPVARYY 212
Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219
GL+RGQVV++ ++VTYR V
Sbjct: 213 GLRRGQVVRIERKSMSAGLYVTYRQV 238
[179][TOP]
>UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
infantum RepID=A4HXV2_LEIIN
Length = 239
Score = 77.8 bits (190), Expect = 5e-13
Identities = 36/86 (41%), Positives = 58/86 (67%)
Frame = -3
Query: 476 NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYY 297
+ + E+F +L VN+T H L PKH L++++ ++L+ + ++ QLPR+L TD +ARYY
Sbjct: 153 DLRFELFEEDELSVNITHHELVPKHSPLSEEELTDVLQAHALELNQLPRILSTDPVARYY 212
Query: 296 GLQRGQVVKVTYTGEITQMHVTYRCV 219
GL+RGQVV++ ++VTYR V
Sbjct: 213 GLKRGQVVRIERKSMSAGLYVTYRQV 238
[180][TOP]
>UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1
Tax=Trypanosoma brucei RepID=Q388R5_9TRYP
Length = 219
Score = 77.0 bits (188), Expect = 9e-13
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Frame = -3
Query: 536 LILIVQNQITSQALKAINLLNF-----KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
+I++ ++ + + ++ +N KV++F DL+VN+T H L PKH L D++ K
Sbjct: 108 VIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167
Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+L+ + ++ LPR+L TD +A Y GL+RG+VV++ +VTYR V
Sbjct: 168 MLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQV 218
[181][TOP]
>UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2
Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG
Length = 219
Score = 77.0 bits (188), Expect = 9e-13
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 5/111 (4%)
Frame = -3
Query: 536 LILIVQNQITSQALKAINLLNF-----KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
+I++ ++ + + ++ +N KV++F DL+VN+T H L PKH L D++ K
Sbjct: 108 VIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKE 167
Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+L+ + ++ LPR+L TD +A Y GL+RG+VV++ +VTYR V
Sbjct: 168 MLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQV 218
[182][TOP]
>UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7ECH0_SCLS1
Length = 242
Score = 76.6 bits (187), Expect = 1e-12
Identities = 35/82 (42%), Positives = 54/82 (65%)
Frame = -3
Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291
++E F DLLVN+T H L PKH +L+ +++ LL +Y +++ QLPR+ D +A+Y GL
Sbjct: 157 RIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYRLKDTQLPRIQAADPVAKYLGL 216
Query: 290 QRGQVVKVTYTGEITQMHVTYR 225
+RGQVVK+ E + +YR
Sbjct: 217 RRGQVVKIIRKSETAGRYASYR 238
[183][TOP]
>UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
B05.10 RepID=A6SPK6_BOTFB
Length = 242
Score = 76.3 bits (186), Expect = 2e-12
Identities = 35/82 (42%), Positives = 54/82 (65%)
Frame = -3
Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291
++E F DLLVN+T H L PKH +L+ +++ LL +Y +++ QLPR+ D +A+Y GL
Sbjct: 157 RIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYRLKDTQLPRIQAADPVAKYLGL 216
Query: 290 QRGQVVKVTYTGEITQMHVTYR 225
+RGQVVK+ E + +YR
Sbjct: 217 RRGQVVKIIRKSETAGRYASYR 238
[184][TOP]
>UniRef100_A7QJL5 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QJL5_VITVI
Length = 67
Score = 75.5 bits (184), Expect = 3e-12
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = -3
Query: 338 LPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW 216
LPRMLQ DAIARYYGL++GQVVKV Y GEIT HVTYRCVW
Sbjct: 27 LPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCVW 67
[185][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
Length = 210
Score = 74.3 bits (181), Expect = 6e-12
Identities = 37/116 (31%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
+ +++ I++VQN IT A +A+ + + +E F +L+ N+T++ P+H V+T
Sbjct: 94 MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+K+ LL +Y ++E L R+ D ++RY+GL+ GQVVK+ + + +++YR V
Sbjct: 154 DEKQELLSRYKLRESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKTAGRYISYRIV 209
[186][TOP]
>UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans
RepID=Q3LW39_BIGNA
Length = 204
Score = 73.9 bits (180), Expect = 8e-12
Identities = 35/108 (32%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Frame = -3
Query: 536 LILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLK 363
+I I + ++ Q A++ NF +EIF ++L+N KH L PKH +L K+ +LK
Sbjct: 96 IIFITKRYLSKQTNIALSHFRRNFNIEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILK 155
Query: 362 KYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
Y++++ QLP++ +D I++YYG ++G + K+ E ++++YR +
Sbjct: 156 SYNVKDSQLPKIKLSDPISKYYGAKKGNMFKIIRFSENIGVYLSYRII 203
[187][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5E0K0_DROPS
Length = 210
Score = 73.9 bits (180), Expect = 8e-12
Identities = 37/116 (31%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
+ +++ I++VQN IT A +A+ + + +E F +L+ N+T++ P+H V+T
Sbjct: 94 MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153
Query: 386 KQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+K+ LL +Y ++E L R+ D ++RY+GL+ GQVVK+ + + +++YR V
Sbjct: 154 DEKQELLSRYKLKESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKSAGRYISYRIV 209
[188][TOP]
>UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SWJ6_PHYPA
Length = 211
Score = 72.8 bits (177), Expect = 2e-11
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAIN--LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTD 387
+ R+ + + +VQ IT + + I+ + +E+F + LVN+T+ L P H++LT
Sbjct: 91 MKRENVPRAVFVVQQHITPLSKQYISRKAQKYHLEVFLEPEFLVNITECYLVPLHEILTP 150
Query: 386 KQKKNLLKKYD----IQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
++K LL++Y + LP M D +ARYYG+ GQVVK+ + E +VTYR
Sbjct: 151 EEKNTLLERYTEGNPVMLVLLPWMQHNDPVARYYGINPGQVVKIIQSSETAGRYVTYR 208
[189][TOP]
>UniRef100_Q8SRJ3 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
RepID=Q8SRJ3_ENCCU
Length = 212
Score = 72.8 bits (177), Expect = 2e-11
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Frame = -3
Query: 554 RDTLTGLILIVQNQITSQALKAINLL-NFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
+D + LILI+ + + I L F +EIF + +L+ N TKH P H+VL+ +++
Sbjct: 95 KDNMFHLILILPQLPSPTVMSMIPLTPRFSIEIFLVEELIFNKTKHSWVPPHRVLSREER 154
Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+++ + + LPR+L++D IARYYG ++G VV++T + + YR V
Sbjct: 155 ESVFRTLKLGPGDLPRILKSDVIARYYGAKQGDVVEITRRSKTAGESIYYRVV 207
[190][TOP]
>UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1
Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH
Length = 202
Score = 72.8 bits (177), Expect = 2e-11
Identities = 37/113 (32%), Positives = 63/113 (55%)
Frame = -3
Query: 557 NRDTLTGLILIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQK 378
+ +++ LILI N++ AL ++ NF +E+F D+L N TKH+L P H++++ ++K
Sbjct: 88 SNQSISKLILISCNKLNHAALAYLDKSNFSIELFLYKDILFNPTKHILVPHHKIMSIEEK 147
Query: 377 KNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
LL LP +L+ D IA+Y G + V+++T + T YR V
Sbjct: 148 TTLLNNLKCSLDDLPIILKKDVIAKYLGAELNDVIEITRKSKTTGESKYYRVV 200
[191][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
isoform 1 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A3E0E
Length = 208
Score = 72.0 bits (175), Expect = 3e-11
Identities = 39/118 (33%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D ARY+G + +VVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDQKARYFG--KSEVVKIIRPSETAGRYITYRLV 207
[192][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
polymerases I, II, and III subunit ABC1) (DNA-directed
RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
lupus familiaris RepID=UPI0000EB19D6
Length = 212
Score = 71.6 bits (174), Expect = 4e-11
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRG--QVVKVTYTGEITQMHVTYRCV 219
T ++ LL +Y ++E QLPR+ D ARY+G QVVK+ E ++TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDQKARYFGKSEADPQVVKIIRPSETAGRYITYRLV 211
[193][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
Length = 278
Score = 70.5 bits (171), Expect = 9e-11
Identities = 34/98 (34%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Frame = -3
Query: 566 QIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFRITDLLVNVTKHVLKPKHQVL 393
Q + + +T +++VQ +T A +++ + + +E F +LL+N+T+H L P+H V+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQ 279
T ++ LL +Y ++E QLPR+ D +ARY+G++RGQ
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQ 189
[194][TOP]
>UniRef100_A8BWP9 RNA polymerase II subunit Rpb5a n=2 Tax=Giardia intestinalis
RepID=A8BWP9_GIALA
Length = 229
Score = 70.5 bits (171), Expect = 9e-11
Identities = 33/81 (40%), Positives = 53/81 (65%)
Frame = -3
Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
+E F +T LL+N+TKHVL PKH +L++ +K +LK+Y E Q+P + +D +ARY GL
Sbjct: 146 IEHFLVTRLLINITKHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLL 205
Query: 287 RGQVVKVTYTGEITQMHVTYR 225
VV+++ E ++ T+R
Sbjct: 206 PNDVVRISRPSETVGIYTTFR 226
[195][TOP]
>UniRef100_C6LZS6 RNA polymerase II subunit Rpb5a n=1 Tax=Giardia intestinalis ATCC
50581 RepID=C6LZS6_GIALA
Length = 229
Score = 69.3 bits (168), Expect = 2e-10
Identities = 32/81 (39%), Positives = 53/81 (65%)
Frame = -3
Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
+E F +T LL+N+T+HVL PKH +L++ +K +LK+Y E Q+P + +D +ARY GL
Sbjct: 146 IEHFLVTRLLINITRHVLVPKHVLLSEMEKSVVLKEYRCTEGQIPIIESSDPMARYLGLL 205
Query: 287 RGQVVKVTYTGEITQMHVTYR 225
VV+++ E ++ T+R
Sbjct: 206 PNDVVRISRPSETVGIYTTFR 226
[196][TOP]
>UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative
(Fragment) n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5LN15_9ALVE
Length = 168
Score = 66.2 bits (160), Expect = 2e-09
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Frame = -3
Query: 545 LTGLILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKN 372
L+ IL+VQ +T+ A AI + ++E+F ++L+VN+T H L P+H+ LT ++K+
Sbjct: 68 LSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKRL 127
Query: 371 LLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR-CV 219
LL++Y ++E QLPR+ +D V+K+ E +VTYR CV
Sbjct: 128 LLERYKVKENQLPRIQSSD-----------PVMKIIRPSETAGRYVTYRLCV 168
[197][TOP]
>UniRef100_C6LZX1 RNA polymerase II subunit Rpb5b n=1 Tax=Giardia intestinalis ATCC
50581 RepID=C6LZX1_GIALA
Length = 201
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = -3
Query: 569 GQIVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFRITDLLVNVTKHVLKPKHQVL 393
GQ ++++ + + I T+ ++N +++I+ + L+N TKH L PKH +L
Sbjct: 83 GQYLDQEAVQKCLFIYFGGPTTSCRSEHRVINDVEIDIYDFSQFLINPTKHSLVPKHTIL 142
Query: 392 TDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYR 225
+ +K +L + + E Q+P + +D I R+Y + G +++V T T H+ YR
Sbjct: 143 SSTEKARVLAELRVTEAQIPLIQASDPIMRWYDAKPGDLIRVMRTSSSTGKHLYYR 198
[198][TOP]
>UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
RepID=B6SJT2_MAIZE
Length = 154
Score = 63.2 bits (152), Expect = 1e-08
Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = -3
Query: 560 VNRDTLTGLILIVQNQITSQALKAIN-LLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDK 384
V + L LILI+Q +I S ++I + FKV+ F+IT+LLVN+TKHVLKPKH+VLT +
Sbjct: 92 VKDENLARLILILQGKIMSPTRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAE 151
Query: 383 QK 378
K
Sbjct: 152 GK 153
[199][TOP]
>UniRef100_C9RDL1 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus vulcanius M7
RepID=C9RDL1_9EURY
Length = 84
Score = 61.2 bits (147), Expect = 5e-08
Identities = 24/75 (32%), Positives = 47/75 (62%)
Frame = -3
Query: 443 LLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 264
+++ VT H+L PKH+++ ++ +LKKY+I+ +QLP++ + D + + G + G V+K+T
Sbjct: 5 IILKVTNHILVPKHEIVPKEEVDEILKKYNIKIQQLPKIYEDDPVIQEIGAKEGDVIKIT 64
Query: 263 YTGEITQMHVTYRCV 219
+ + YR V
Sbjct: 65 RNSPTAGLSIAYRLV 79
[200][TOP]
>UniRef100_A8B5W9 RNA polymerase II subunit Rpb5b n=2 Tax=Giardia intestinalis
RepID=A8B5W9_GIALA
Length = 201
Score = 59.7 bits (143), Expect = 2e-07
Identities = 27/82 (32%), Positives = 48/82 (58%)
Frame = -3
Query: 470 KVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGL 291
+V+I + L+N TKH L PKH +L++ +K +L + + E Q+P + +D I R+Y
Sbjct: 117 EVDIHDFSQFLINPTKHRLVPKHTILSNTEKARVLAELRVTEAQIPLIQTSDPIMRWYDA 176
Query: 290 QRGQVVKVTYTGEITQMHVTYR 225
+ G ++++T T H+ YR
Sbjct: 177 KPGDLIRITRTSGSAGKHLYYR 198
[201][TOP]
>UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide E, partial n=1 Tax=Hydra magnipapillata
RepID=UPI0001925DCF
Length = 187
Score = 58.5 bits (140), Expect = 3e-07
Identities = 34/91 (37%), Positives = 51/91 (56%)
Frame = -3
Query: 416 LKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMH 237
L P+H VL+ ++K LL +Y +++ QLPR+ Q D IARY+GL+RGQ V Y +
Sbjct: 101 LVPEHVVLSPEEKAELLTRYKLKDHQLPRIQQGDTIARYFGLKRGQFVCTFY----FNLG 156
Query: 236 VTYRCVW*YFLGLGFSLVLLFEFSEFICCIV 144
V C+ + +GF L F + C +V
Sbjct: 157 VWQHCISSQYEVIGFFL-NFDNFGSYTCVVV 186
[202][TOP]
>UniRef100_O27122 DNA-directed RNA polymerase subunit H n=1 Tax=Methanothermobacter
thermautotrophicus str. Delta H RepID=RPOH_METTH
Length = 77
Score = 58.5 bits (140), Expect = 3e-07
Identities = 26/71 (36%), Positives = 42/71 (59%)
Frame = -3
Query: 431 VTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGE 252
+ KH L P+H +L + + K +LK+ D +QLP++ TD +A+ G +RG +VK+
Sbjct: 5 ILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSP 64
Query: 251 ITQMHVTYRCV 219
+ VTYR V
Sbjct: 65 TAEEFVTYRLV 75
[203][TOP]
>UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=B7EQI7_ORYSJ
Length = 167
Score = 57.8 bits (138), Expect = 6e-07
Identities = 27/68 (39%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +++ A A+ ++ F +E+F+ +LLVN+ H L P+H++LT +QKK LL++
Sbjct: 98 ILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLER 157
Query: 359 YDIQEKQL 336
Y ++E Q+
Sbjct: 158 YTVKETQV 165
[204][TOP]
>UniRef100_Q4QDW3 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania major
RepID=Q4QDW3_LEIMA
Length = 342
Score = 57.8 bits (138), Expect = 6e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = -3
Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
+++F L NV +H P+H LT + + L + + QLPRM ++D + +Y GLQ
Sbjct: 259 IQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQ 318
Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219
RG +V +T G+ + + YR V
Sbjct: 319 RGSIVHITREGKQSGPYSMYRHV 341
[205][TOP]
>UniRef100_A4HXV3 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania
infantum RepID=A4HXV3_LEIIN
Length = 342
Score = 57.8 bits (138), Expect = 6e-07
Identities = 28/83 (33%), Positives = 46/83 (55%)
Frame = -3
Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
+++F L NV +H P+H LT + + L + + QLPRM ++D + +Y GLQ
Sbjct: 259 IQVFEEEALAFNVVRHETVPRHVALTPAEAEAFLAERKLNVAQLPRMQESDPLVQYLGLQ 318
Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219
RG +V +T G+ + + YR V
Sbjct: 319 RGSIVHITREGKQSGPYSMYRHV 341
[206][TOP]
>UniRef100_UPI000155C2F2 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide E, 25kDa n=1 Tax=Ornithorhynchus anatinus
RepID=UPI000155C2F2
Length = 60
Score = 57.0 bits (136), Expect = 1e-06
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = -3
Query: 395 LTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCV 219
+T ++ LL +Y ++E QLPR+ D +ARY+G++RGQVVK+ E ++TYR V
Sbjct: 1 MTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 59
[207][TOP]
>UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=A9NTD1_PICSI
Length = 191
Score = 57.0 bits (136), Expect = 1e-06
Identities = 27/68 (39%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Frame = -3
Query: 533 ILIVQNQITSQALKAINLLN--FKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKK 360
IL+VQ +T A +++ + F +E+F+ +LLVN+ +HVL P+ Q+LT ++KK LL++
Sbjct: 98 ILVVQQALTPFARQSVQEFSGKFHLEVFQEAELLVNIKEHVLVPEQQILTPEEKKTLLER 157
Query: 359 YDIQEKQL 336
Y ++E Q+
Sbjct: 158 YTLKETQV 165
[208][TOP]
>UniRef100_Q91F72 Putative DNA-directed RNA polymerase subunit 454R n=1
Tax=Invertebrate iridescent virus 6 RepID=454R_IIV6
Length = 184
Score = 56.6 bits (135), Expect = 1e-06
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Frame = -3
Query: 530 LIVQNQITSQALKAINLLNFKVEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKY-- 357
+I IT+ K KVEIF DL +N+TK+ L+P L D++ K+ KKY
Sbjct: 75 IICDGSITTNVKKIEQTTKGKVEIFHNKDLQMNITKYHLQPLFNKLLDEEAKDFKKKYIK 134
Query: 356 -------DIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 264
I + P M ++D IAR++ Q G V+K+T
Sbjct: 135 CKIENGKKIILQSFPSMSKSDPIARFFKYQSGDVIKIT 172
[209][TOP]
>UniRef100_C7P938 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus fervens AG86
RepID=C7P938_METFA
Length = 78
Score = 55.5 bits (132), Expect = 3e-06
Identities = 23/73 (31%), Positives = 45/73 (61%)
Frame = -3
Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258
+ VT H+L PKH+++ ++ + +LK+Y+I+ +QLP++ + D + + G + G VV++
Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRIIRK 60
Query: 257 GEITQMHVTYRCV 219
+ V YR V
Sbjct: 61 SPTAGVSVAYRLV 73
[210][TOP]
>UniRef100_C5U6G3 RNA polymerase Rpb5 n=1 Tax=Methanocaldococcus infernus ME
RepID=C5U6G3_9EURY
Length = 78
Score = 55.5 bits (132), Expect = 3e-06
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = -3
Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258
+ VT H+L PKH++L+ ++ + LLKK I+ +QLP++ + D + + G + G VVK+
Sbjct: 1 MKVTDHILVPKHEILSKEEVEELLKKLRIKIQQLPKIYEDDPVIQEIGAKEGDVVKIIRE 60
Query: 257 GEITQMHVTYRCV 219
V YR V
Sbjct: 61 SPTAGTFVAYRLV 73
[211][TOP]
>UniRef100_Q58443 DNA-directed RNA polymerase subunit H n=1 Tax=Methanocaldococcus
jannaschii RepID=RPOH_METJA
Length = 78
Score = 55.5 bits (132), Expect = 3e-06
Identities = 23/73 (31%), Positives = 45/73 (61%)
Frame = -3
Query: 437 VNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYT 258
+ VT H+L PKH+++ ++ + +LK+Y+I+ +QLP++ + D + + G + G VV+V
Sbjct: 1 MKVTDHILVPKHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRK 60
Query: 257 GEITQMHVTYRCV 219
+ + YR V
Sbjct: 61 SPTAGVSIAYRLV 73
[212][TOP]
>UniRef100_A4H9J0 DNA-directed RNA polymerase II, putative n=1 Tax=Leishmania
braziliensis RepID=A4H9J0_LEIBR
Length = 322
Score = 55.1 bits (131), Expect = 4e-06
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = -3
Query: 467 VEIFRITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQ 288
+++F L NV +H P H L+ + L + + QLPRML++D + +Y GL
Sbjct: 239 IQVFEEEALAFNVVRHETVPHHVALSPTEAAMFLAERKLNVSQLPRMLESDPLVQYLGLH 298
Query: 287 RGQVVKVTYTGEITQMHVTYRCV 219
RG +V +T G+ + + YR V
Sbjct: 299 RGSIVHITREGKQSGPYSMYRHV 321
[213][TOP]
>UniRef100_O74019 DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus horikoshii
RepID=RPOH_PYRHO
Length = 82
Score = 55.1 bits (131), Expect = 4e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Frame = -3
Query: 434 NVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTG 255
N+ KHVL P+H++L++++KK LL+KY I QLP++ +D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYKITPAQLPQIRASDPAVKALGAKPGDIIEIKRRS 67
Query: 254 EITQMHVTYRCV 219
++ YR V
Sbjct: 68 PTAGVYYYYRVV 79
[214][TOP]
>UniRef100_Q9V116 DNA-directed RNA polymerase subunit H n=1 Tax=Pyrococcus abyssi
RepID=RPOH_PYRAB
Length = 82
Score = 54.7 bits (130), Expect = 5e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Frame = -3
Query: 434 NVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVTYTG 255
N+ KHVL P+H++L++++KK LL+KY I QLP++ +D + G + G ++++
Sbjct: 8 NIFKHVLVPEHRILSEEEKKALLEKYRITPAQLPQIKASDPAVKALGAKPGDIIEIKRKS 67
Query: 254 EITQMHVTYRCV 219
++ YR V
Sbjct: 68 PTAGVYYYYRVV 79