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[1][TOP]
>UniRef100_P03589 Methyltransferase n=1 Tax=Alfalfa mosaic virus (strain 425 / isolate
Leiden) RepID=ORF1A_AMVLE
Length = 1126
Score = 377 bits (968), Expect = e-103
Identities = 183/186 (98%), Positives = 185/186 (99%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH
Sbjct: 895 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 954
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
KLTGKVERKLITWRSPADATYCLEKYFYKNK+PVKTNSRVLRSIEVVPINSPVSVERNTN
Sbjct: 955 KLTGKVERKLITWRSPADATYCLEKYFYKNKKPVKTNSRVLRSIEVVPINSPVSVERNTN 1014
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL TGRDPIN
Sbjct: 1015 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLATGRDPIN 1074
Query: 18 GPCHGL 1
GPC+GL
Sbjct: 1075 GPCNGL 1080
[2][TOP]
>UniRef100_P89033 Putative viral replicase n=1 Tax=Prune dwarf virus RepID=P89033_9BROM
Length = 1055
Score = 219 bits (559), Expect = 8e-56
Identities = 107/186 (57%), Positives = 137/186 (73%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ +A KA++++FDECF+QHAG++YAAAT+AG SEVI FGDTEQIPF+SRN F+ +HH
Sbjct: 827 LMTNNAPKAKKMLFDECFMQHAGVIYAAATIAGVSEVIAFGDTEQIPFISRNDMFLLKHH 886
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
L G ++ IT+R+PAD Y L K+FY+ K PVKT +LRSI+V PIN+ VE + +
Sbjct: 887 VLKGDHVKQTITYRNPADTVYALSKFFYRKKTPVKTKRHILRSIKVKPINALSQVEVDAS 946
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
A+Y+ HTQAEKA L A K C I+TTHE QG +FD V F RLTRTS L +G+ PI
Sbjct: 947 AVYVTHTQAEKASLLATPSFKSC-KIYTTHEVQGGSFDKVIFVRLTRTSNHLYSGKHPIM 1005
Query: 18 GPCHGL 1
G CHGL
Sbjct: 1006 GACHGL 1011
[3][TOP]
>UniRef100_Q5QDM5 Replicase n=1 Tax=Fragaria chiloensis latent virus RepID=Q5QDM5_9BROM
Length = 1083
Score = 198 bits (503), Expect = 3e-49
Identities = 99/186 (53%), Positives = 126/186 (67%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ S A+++ FDECF+QHAG +YAAATLA CSEV +GD EQIPF+SR S F H
Sbjct: 845 LMTNSPPTAKKMFFDECFMQHAGCIYAAATLARCSEVYAYGDKEQIPFISRCDSIRFTHE 904
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
KL GKV ++L+T+R P DAT L K+ YK K+ + T V RSI +VPIN+ +E +
Sbjct: 905 KLEGKVVQQLVTYRCPVDATAALSKFLYKKKKNIVTRRNVDRSISIVPINAVSQIEIDDK 964
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
A+Y+ HTQAEK L++ +F+THEA+G TFD VYF RL+RTST LT G P
Sbjct: 965 AVYITHTQAEKKALQSADGFSRM-KVFSTHEAEGGTFDKVYFVRLSRTSTHLTAGSHPTM 1023
Query: 18 GPCHGL 1
G CHGL
Sbjct: 1024 GACHGL 1029
[4][TOP]
>UniRef100_C7T303 p1 protein n=1 Tax=Parietaria mottle virus RepID=C7T303_9BROM
Length = 1097
Score = 192 bits (489), Expect = 1e-47
Identities = 102/187 (54%), Positives = 131/187 (70%), Gaps = 1/187 (0%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM S A R++FDECFL HAG VYAAATLA SEVI GDTEQ+PF+SR P F +HH
Sbjct: 867 LMLKSWFSASRMLFDECFLTHAGCVYAAATLAQVSEVIALGDTEQVPFISRLPEFRMQHH 926
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
KL+G++E + T+R P DATYCL+ FYKNK VK+ S V RSIE+VPI+SP+ + +
Sbjct: 927 KLSGEIETQTTTYRCPRDATYCLKSMFYKNK-SVKSASVVERSIELVPISSPIQIPCEND 985
Query: 198 ALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPI 22
LY+ HT+A+K A+LK K +NI TTHEAQG T+D V + RL++T+ L +G+ P
Sbjct: 986 VLYITHTRADKDALLKIPGFKK--ENIKTTHEAQGDTWDKVVYFRLSKTTNLLHSGKGPE 1043
Query: 21 NGPCHGL 1
G CH L
Sbjct: 1044 LGSCHNL 1050
[5][TOP]
>UniRef100_Q6RK14 P1 protein n=1 Tax=Parietaria mottle virus RepID=Q6RK14_9BROM
Length = 1098
Score = 191 bits (485), Expect = 3e-47
Identities = 102/187 (54%), Positives = 130/187 (69%), Gaps = 1/187 (0%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM S A R++FDECFL HAG VYAAATLA SEVI GDTEQ+PF+SR P F +HH
Sbjct: 868 LMLKSWFSASRMLFDECFLTHAGCVYAAATLAQVSEVIALGDTEQVPFISRLPEFRMQHH 927
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
KL+G++E + T+R P DATYCL+ FYKNK VKT S V RSI++VPI+SP+ + +
Sbjct: 928 KLSGEIETQTTTYRCPRDATYCLKSMFYKNK-SVKTASVVERSIDLVPISSPIQIPCEND 986
Query: 198 ALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPI 22
LY+ HT+A+K A+LK K +NI TTHEAQG T+D V RL++T+ L +G+ P
Sbjct: 987 VLYITHTRADKDALLKIPGFKK--ENIKTTHEAQGDTWDKVVCFRLSKTTNLLHSGKGPE 1044
Query: 21 NGPCHGL 1
G CH L
Sbjct: 1045 LGSCHNL 1051
[6][TOP]
>UniRef100_Q2PMD3 Replicase n=1 Tax=Strawberry necrotic shock virus RepID=Q2PMD3_9BROM
Length = 1090
Score = 189 bits (479), Expect = 2e-46
Identities = 100/187 (53%), Positives = 129/187 (68%), Gaps = 1/187 (0%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + + RL+FDECFL HAG +YAAATLA EVI GDTEQ+PF+SR P F +HH
Sbjct: 859 LMLKTWFSSDRLLFDECFLTHAGCIYAAATLAQVKEVIALGDTEQVPFISRLPEFRVQHH 918
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
KL G +E + T+R P DAT CL+ +FYK K+ VK+ SRV RS+E+ PINS V + R N
Sbjct: 919 KLCGNIEVQTTTYRCPRDATACLKNFFYK-KKTVKSASRVERSLELCPINSAVQIPRVEN 977
Query: 198 ALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPI 22
LY+ HT+A+K A++K +K DNI TTHEAQG T+DNV RL++T+ L +G+ P
Sbjct: 978 TLYMTHTRADKDALMKIPGFVK--DNIKTTHEAQGDTWDNVIMFRLSKTTGLLHSGKGPE 1035
Query: 21 NGPCHGL 1
G CH L
Sbjct: 1036 IGSCHNL 1042
[7][TOP]
>UniRef100_B7TX62 Replicase n=1 Tax=Tobacco streak virus RepID=B7TX62_9BROM
Length = 1094
Score = 187 bits (474), Expect = 6e-46
Identities = 97/186 (52%), Positives = 127/186 (68%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM S A+RL+FDECFL HAG VYAAATLA EVI FGDTEQ+PF+SR P F HH
Sbjct: 865 LMLKSWFSAERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQVPFISRLPEFRMEHH 924
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
K+ GK++ + T+R P DAT CL+K+FYKNK VK+ S V RS+E+ PI S + ++ +
Sbjct: 925 KVKGKIDVQTTTYRCPRDATACLKKFFYKNK-TVKSASVVDRSLELCPIQSVIQIQPERD 983
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
LY+ HT+A+K L + D I TTHEAQG+T+D+V RL++T+ L +G+ P
Sbjct: 984 VLYMTHTRADKETLMRIPGMPK-DRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGPDL 1042
Query: 18 GPCHGL 1
GPCH L
Sbjct: 1043 GPCHNL 1048
[8][TOP]
>UniRef100_B9VV81 p1 protein (Fragment) n=1 Tax=Bacopa chlorosis virus
RepID=B9VV81_9BROM
Length = 1054
Score = 186 bits (473), Expect = 8e-46
Identities = 100/187 (53%), Positives = 128/187 (68%), Gaps = 1/187 (0%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + A RL+FDECFL HAG VYAAA+LA EVI GDTEQ+PF+SR P F +HH
Sbjct: 866 LMLKNWFSADRLLFDECFLTHAGCVYAAASLAQVKEVIALGDTEQVPFISRLPEFRMQHH 925
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
KL+GK+E + T+R P DATYCL+ FYK K VKT S V RSI+++PI+SP+ + N
Sbjct: 926 KLSGKIECQTTTYRCPRDATYCLKTQFYKTK-SVKTASVVERSIDLIPISSPIQIPCEDN 984
Query: 198 ALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPI 22
LY+ HT+A+K A++K K NI TTHEAQG T+DNV RL++T+ L +G+ P
Sbjct: 985 VLYITHTRADKDALMKIPGFNK--SNIKTTHEAQGDTWDNVIAFRLSKTTNLLHSGKGPD 1042
Query: 21 NGPCHGL 1
G CH L
Sbjct: 1043 LGCCHNL 1049
[9][TOP]
>UniRef100_Q2QF35 Replicase n=1 Tax=Blackberry chlorotic ringspot virus
RepID=Q2QF35_9BROM
Length = 1093
Score = 182 bits (462), Expect = 1e-44
Identities = 100/187 (53%), Positives = 127/187 (67%), Gaps = 1/187 (0%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM S + RL+FDECFL HAG VYAAATLA EVI GDTEQ+PF+SR P F ++H
Sbjct: 862 LMLKSWFSSDRLLFDECFLTHAGCVYAAATLAQVKEVIALGDTEQVPFISRLPEFKVQYH 921
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
KL GK+E + T+R P DAT CL+ +FYK K VK+ SRV RS+E+ PINS V + N
Sbjct: 922 KLCGKIEVQTTTYRCPRDATACLKTFFYKRK-TVKSASRVDRSLELCPINSAVQIPCVEN 980
Query: 198 ALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPI 22
LY+ HT+A+K A++K K +NI TTHEAQG T+DNV RL++T+ L +G+ P
Sbjct: 981 TLYMTHTRADKDALMKIPGFNK--NNIKTTHEAQGDTWDNVIMFRLSKTTGLLHSGKGPD 1038
Query: 21 NGPCHGL 1
G CH L
Sbjct: 1039 IGSCHNL 1045
[10][TOP]
>UniRef100_Q997A4 Putative viral replicase p1 n=1 Tax=American plum line pattern virus
RepID=Q997A4_9BROM
Length = 1062
Score = 181 bits (460), Expect = 3e-44
Identities = 95/187 (50%), Positives = 125/187 (66%), Gaps = 1/187 (0%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ + A + FDECFLQH+G++ AA TLA ++ FGDTEQIPF+SRNP F F+H
Sbjct: 824 LMAKNPPTADVVYFDECFLQHSGVILAAVTLAKAKKLYAFGDTEQIPFISRNPLFRFKHR 883
Query: 378 KLTGKVERK-LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 202
LT + L T+RSPADAT+ L KYFYK K +KT SRV SI V PI+ +E +
Sbjct: 884 FLTSNRRIECLDTFRSPADATFLLGKYFYKKKSQIKTTSRVQPSISVKPISVHDQIEVDK 943
Query: 201 NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPI 22
+A+Y C+ QAEKA L ++ K + + T HE QG++ D V F RL++TST LTTG+ P+
Sbjct: 944 SAIYCCYIQAEKAELLSKPQFKNME-VATIHEKQGESVDKVIFFRLSKTSTELTTGKHPV 1002
Query: 21 NGPCHGL 1
GPCH L
Sbjct: 1003 MGPCHAL 1009
[11][TOP]
>UniRef100_Q6JE42 Replicase n=1 Tax=Humulus japonicus latent virus RepID=Q6JE42_9BROM
Length = 1041
Score = 181 bits (460), Expect = 3e-44
Identities = 96/187 (51%), Positives = 128/187 (68%), Gaps = 1/187 (0%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM++ KA+RL+FDECF++HAG VYAAATLA C EV+ +GDTEQIP +SRNP+F FR H
Sbjct: 814 LMASRPEKARRLLFDECFMRHAGFVYAAATLAECEEVLAYGDTEQIPEISRNPAFKFRCH 873
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKT-NSRVLRSIEVVPINSPVSVERNT 202
KL G++ ++ +T+R PADA Y L K+FYK KR +KT +RS+ + INS +V +
Sbjct: 874 KLEGEIVQQTVTYRCPADAVYVLNKHFYKTKRNIKTKRHNPMRSLNIHAINSVRAVPVDK 933
Query: 201 NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPI 22
+ALYL +TQAEK LK+ G + T HEA+G + V RL+RTS SL TG+D +
Sbjct: 934 SALYLTYTQAEKEQLKSA--FPGV-KVLTVHEAEGASVPKVILVRLSRTSLSLYTGKDAV 990
Query: 21 NGPCHGL 1
G H L
Sbjct: 991 FGASHAL 997
[12][TOP]
>UniRef100_Q9QGH0 Putative methyltransferase/helicase n=1 Tax=Apple mosaic virus
RepID=Q9QGH0_9BROM
Length = 1046
Score = 174 bits (442), Expect = 3e-42
Identities = 99/187 (52%), Positives = 128/187 (68%), Gaps = 1/187 (0%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ S +K++R+IFDECFLQHAG VYAAAT+A E++ FGDT+QIPFVSR P R+H
Sbjct: 815 LMNGSKIKSKRIIFDECFLQHAGCVYAAATIAEAEELVMFGDTQQIPFVSRIPYMKLRNH 874
Query: 378 KLTGKVER-KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 202
K++ R +T+RSPAD T L K+FY K+ ++T +R +RS+ V PI S V+ N
Sbjct: 875 KVSADERRAHNMTYRSPADTTMALSKWFY--KKSIRTANRTIRSMIVKPIVSVNQVD-ND 931
Query: 201 NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPI 22
LY+ HTQAEK L A T + + T+ EAQG T NV F RL+RTS SL TG+DP+
Sbjct: 932 FELYITHTQAEKHTLIA-TGKFDKNKVHTSAEAQGMTERNVAFVRLSRTSISLYTGKDPL 990
Query: 21 NGPCHGL 1
GPCHGL
Sbjct: 991 MGPCHGL 997
[13][TOP]
>UniRef100_Q99HR1 Viral replicase p1 n=1 Tax=Tulare apple mosaic virus
RepID=Q99HR1_9BROM
Length = 1060
Score = 169 bits (427), Expect = 2e-40
Identities = 84/178 (47%), Positives = 119/178 (66%)
Frame = -2
Query: 534 AQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVER 355
A+R++ DECFL H+G++YAAATLA E+I FGDT+QIPFVSR P+F +H + G ++
Sbjct: 840 AERMLVDECFLVHSGIIYAAATLAQVKEIIAFGDTKQIPFVSRIPTFTLKHPSIKGVLKP 899
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
KL+T+R P DAT L + FYK K VKT + + S+ ++ INS + + + LY+ HTQ
Sbjct: 900 KLVTYRCPRDATAVLSEKFYKKK--VKTFNPISSSLSLININSGMEIPAERDTLYIMHTQ 957
Query: 174 AEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPCHGL 1
A+K + + +N+ TTHEAQGKTFDNV RL++T+ L +G+ P GP H L
Sbjct: 958 ADKCAMLRHPGI-NANNVMTTHEAQGKTFDNVILVRLSKTTNLLYSGKMPDAGPSHNL 1014
[14][TOP]
>UniRef100_Q91NQ1 Replicase p1 n=1 Tax=Prunus necrotic ringspot virus
RepID=Q91NQ1_9BROM
Length = 1045
Score = 168 bits (425), Expect = 3e-40
Identities = 99/188 (52%), Positives = 125/188 (66%), Gaps = 2/188 (1%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ + R+IFDECFLQHAG VYAAA+LAG E++ FGDT+QIPFVSR P F + H
Sbjct: 814 LMNPKRPSSVRVIFDECFLQHAGCVYAAASLAGAEELVLFGDTKQIPFVSRIPHFRLKDH 873
Query: 378 KLTG--KVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 205
++ KV L T+R PADAT L K+FY +R VKT + LRS+ V PI S ++R+
Sbjct: 874 LVSADEKVMSNL-TYRCPADATMALSKWFY--RRNVKTANTTLRSMSVKPIVSVSQIDRD 930
Query: 204 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ LY+ HTQAEK L A + + D +FTT EAQGKT RL+RTS SL TG+DP
Sbjct: 931 FD-LYMTHTQAEKHTLIA-SGVVPKDKVFTTAEAQGKTESRAALVRLSRTSMSLFTGKDP 988
Query: 24 INGPCHGL 1
+ GPCH L
Sbjct: 989 LMGPCHSL 996
[15][TOP]
>UniRef100_B7T2J3 Replicase (Fragment) n=1 Tax=Lilac ring mottle virus
RepID=B7T2J3_9BROM
Length = 621
Score = 167 bits (424), Expect = 4e-40
Identities = 89/192 (46%), Positives = 121/192 (63%), Gaps = 6/192 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + +RL+ DECFL H+G +YAAATLA EV+ FGDT+QIPF+SR P+F RH
Sbjct: 385 LMMKTWFTGERLLVDECFLVHSGAIYAAATLARVKEVLAFGDTKQIPFISRIPTFPIRHA 444
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
L G ++ + +T+R P DAT LEK+FY KRP+KT S V S+++ PI+S ++V N
Sbjct: 445 SLNGVLKPRNVTFRCPRDATAALEKFFY--KRPIKTASAVSNSMQIHPISSVMNVPVEKN 502
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDN------IFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
LY+ HTQA+K L + + C +TH+AQGKT+DNV RL+RT L +
Sbjct: 503 TLYITHTQADKCNLLQRNGINACVTTDECALALSTHKAQGKTYDNVICVRLSRTGNLLYS 562
Query: 36 GRDPINGPCHGL 1
G+ P G H L
Sbjct: 563 GKSPECGSSHNL 574
[16][TOP]
>UniRef100_Q9IMN1 Replicase 1a (Fragment) n=1 Tax=Hydrangea mosaic virus
RepID=Q9IMN1_9BROM
Length = 387
Score = 160 bits (404), Expect = 8e-38
Identities = 90/186 (48%), Positives = 117/186 (62%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + A RL+ DECFL HAGL+YAAATLA EVI FGDT+QIPFVSR P+ RH
Sbjct: 159 LMLKNWFTADRLLVDECFLVHAGLIYAAATLARVKEVIAFGDTKQIPFVSRIPTVTLRHA 218
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
+ GK++ + +T+R P D T L + FY K V T + V S+E++ INS V + +
Sbjct: 219 SVIGKLKPRTMTYRCPRDVTAVLSEKFYNTK--VGTFNPVKTSLELININSGVEIPVVKD 276
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
ALY+ HT+A+K LK + D + TTHEAQGKT DNV RL+RT+ L +G+ P
Sbjct: 277 ALYISHTKADKFALKRLPGMSNVD-VLTTHEAQGKTRDNVILVRLSRTTNLLYSGKMPDA 335
Query: 18 GPCHGL 1
G H L
Sbjct: 336 GSSHNL 341
[17][TOP]
>UniRef100_Q98701 Replicase n=1 Tax=Elm mottle virus RepID=Q98701_9BROM
Length = 1055
Score = 160 bits (404), Expect = 8e-38
Identities = 90/186 (48%), Positives = 117/186 (62%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + A RL+ DECFL HAGL+YAAATLA EVI FGDT+QIPFVSR P+ RH
Sbjct: 827 LMLKNWFTADRLLVDECFLVHAGLIYAAATLARVKEVIAFGDTKQIPFVSRIPTVTLRHA 886
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
+ GK++ + +T+R P D T L + FY K V T + V S+E++ INS V + +
Sbjct: 887 SVIGKLKPRTMTYRCPRDVTAVLSEKFYNTK--VGTFNPVKTSLELININSGVEIPVVKD 944
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
ALY+ HT+A+K LK + D + TTHEAQGKT DNV RL+RT+ L +G+ P
Sbjct: 945 ALYISHTKADKFALKRLPGMSNVD-VLTTHEAQGKTRDNVILVRLSRTTNLLYSGKMPDP 1003
Query: 18 GPCHGL 1
G H L
Sbjct: 1004 GSSHNL 1009
[18][TOP]
>UniRef100_B8RCA3 Replicase n=1 Tax=Asparagus virus 2 RepID=B8RCA3_9BROM
Length = 1076
Score = 158 bits (399), Expect = 3e-37
Identities = 90/186 (48%), Positives = 117/186 (62%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + A RL+ DECFL HAGL+YAAATLA EVI FGDT+QIPFVSR P+ RH
Sbjct: 827 LMLKNWFTADRLLVDECFLVHAGLIYAAATLARVKEVIAFGDTKQIPFVSRIPTVTLRHA 886
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
+ G ++ + IT+R P D T L + FY K VKT + V S++++ INS V + +
Sbjct: 887 SVIGVLKPRTITYRCPRDVTAILSEKFYHTK--VKTFNPVKISLDLININSAVEIPVVKD 944
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
ALY+ HT+A+K LK + D + TTHEAQGKT DNV RL+RT+ L +G+ P
Sbjct: 945 ALYITHTKADKFALKKLPGMGNVD-VLTTHEAQGKTRDNVILARLSRTTHLLYSGKMPDA 1003
Query: 18 GPCHGL 1
G H L
Sbjct: 1004 GSSHNL 1009
[19][TOP]
>UniRef100_Q66108 Citrus leaf rugose ilarvirus putative viral replicase n=1 Tax=Citrus
leaf rugose virus RepID=Q66108_9BROM
Length = 1051
Score = 157 bits (397), Expect = 5e-37
Identities = 82/186 (44%), Positives = 116/186 (62%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM A RL+ DECFL H+G++YAAATL E+I FGDT+QIPFVSR P+F +H
Sbjct: 818 LMLKKWFTADRLLVDECFLVHSGIIYAAATLGQVKEIIAFGDTKQIPFVSRIPTFSLKHP 877
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
+ GK++ K IT+R P DAT L + FY+ VKT + S+ ++ I+S + + +
Sbjct: 878 SIRGKLKPKTITYRCPRDATAVLSEKFYETN--VKTFNPTSSSLSLIDISSSMEIPAEKD 935
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
LY+ HTQA+K + + DN+ TTHEAQGKTF++V RL++ + L +G+ P
Sbjct: 936 TLYIMHTQADKCAMLRHPGINP-DNVMTTHEAQGKTFNHVILVRLSKPTNLLYSGKMPDA 994
Query: 18 GPCHGL 1
GP H L
Sbjct: 995 GPSHNL 1000
[20][TOP]
>UniRef100_A5JVP4 Putative viral replicase n=1 Tax=Citrus variegation virus
RepID=A5JVP4_9BROM
Length = 1076
Score = 155 bits (393), Expect = 1e-36
Identities = 87/186 (46%), Positives = 116/186 (62%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + A RL+ DECFL HAGL+YAAA LA EVI FGDT+QIPFVSR P+ RH
Sbjct: 827 LMLKNWFTAGRLLVDECFLVHAGLIYAAAALARVKEVIAFGDTKQIPFVSRIPAVTLRHA 886
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
+ G ++ + +T+R P D T L + FY K VKT + V S++++ INS + + +
Sbjct: 887 SVIGTLKPRTVTYRCPRDVTAVLSEKFYNTK--VKTFNPVKTSLDLISINSGMEIPVVKD 944
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
ALY+ HT+A+K LK + D + TTHEAQGKT DNV RL+RT+ L +G+ P
Sbjct: 945 ALYISHTKADKFALKRLPGMSNVD-VLTTHEAQGKTRDNVILVRLSRTTHLLYSGKMPEA 1003
Query: 18 GPCHGL 1
G H L
Sbjct: 1004 GSSHNL 1009
[21][TOP]
>UniRef100_O57161 Putative replicase n=1 Tax=Spinach latent virus RepID=O57161_9BROM
Length = 1056
Score = 154 bits (388), Expect = 6e-36
Identities = 87/186 (46%), Positives = 116/186 (62%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + A+RL+ DECFL HAGLVYAAATLA EVI FGDT+QIPFVSR P+ RH
Sbjct: 828 LMLRTWFTAERLLVDECFLVHAGLVYAAATLARVKEVIAFGDTKQIPFVSRIPTVKLRHA 887
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
+ G ++ + IT+R P D T L + FY K VKT + V +S+E+ I+S + +
Sbjct: 888 SVVGTLKPRTITYRCPRDVTAVLSEKFYGTK--VKTFNLVKQSLELKNIDSSTEIPVEKD 945
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
LY+ HTQA+K L + G + + TTHEAQGKT D+V RL++T+ L +G+ P
Sbjct: 946 TLYIAHTQADKHALMRLPGMNGIE-VLTTHEAQGKTRDHVILVRLSKTTNLLYSGKMPDA 1004
Query: 18 GPCHGL 1
G H L
Sbjct: 1005 GGSHNL 1010
[22][TOP]
>UniRef100_P89680 Putative viral replicase n=1 Tax=Tobacco streak virus
RepID=P89680_9BROM
Length = 1094
Score = 146 bits (369), Expect = 9e-34
Identities = 81/186 (43%), Positives = 110/186 (59%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM S A+RL+FDECFL HAG VYAAATLA EVI FGDTEQ+PF+SR P F HH
Sbjct: 865 LMLKSWFSAERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQVPFISRLPEFRMEHH 924
Query: 378 KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
K+ GK+ + + L K + K+ + + R E+ PI S + ++ +
Sbjct: 925 KVKGKIS-CTTDHLQMSKRCHSLFKENFLQKQDCEVSERCSSLAELCPIQSVIQIQPERD 983
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPIN 19
LY+ HT+A+K L + D I TTHEAQG+T+D+V RL++T+ L +G+ P
Sbjct: 984 VLYMTHTRADKETLMRIPGMPK-DRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGPDL 1042
Query: 18 GPCHGL 1
GPCH L
Sbjct: 1043 GPCHNL 1048
[23][TOP]
>UniRef100_Q9IWA9 Replication protein n=2 Tax=Oat golden stripe virus
RepID=Q9IWA9_9VIRU
Length = 1853
Score = 110 bits (276), Expect = 6e-23
Identities = 71/176 (40%), Positives = 94/176 (53%), Gaps = 7/176 (3%)
Frame = -2
Query: 540 VKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GK 364
++A + FDE + HAG+VY A L G +VI GD++QIPFV+R S ++ KL +
Sbjct: 1116 LRASVVHFDEALMAHAGMVYFCADLLGAKKVICQGDSQQIPFVNRVESISLQYAKLVIDR 1175
Query: 363 VERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNT 202
E +T+RSP D + L Y + V T + VLRS+ VV P+NS V
Sbjct: 1176 TESVRMTYRSPIDVAHYLNAKAYYDGGRVTTKNEVLRSMSVVGPRGTRPMNSAYCVPYVK 1235
Query: 201 NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
+ YL TQAEK L KG ++ T HEAQGKTFDNV RL T + G
Sbjct: 1236 DTQYLTFTQAEKDDLFKALRSKGSVSVNTVHEAQGKTFDNVILVRLKTTENPIYPG 1291
[24][TOP]
>UniRef100_Q89249 209 kDa readthrough protein n=2 Tax=Soil-borne wheat mosaic virus
RepID=Q89249_SBWMV
Length = 1828
Score = 107 bits (267), Expect = 6e-22
Identities = 67/175 (38%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 361
+A + FDE + HAG+VY A + G +VI GD++QIPF++R S ++ KL +
Sbjct: 1092 RAATVHFDEALMAHAGIVYFCADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDET 1151
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K + + V T + VLRS++VV P+ S V + +
Sbjct: 1152 EYVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRD 1211
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
A YL TQ+EKA L KG + T HE QGKTFD+V RL T + G
Sbjct: 1212 AQYLTFTQSEKADLYKALRAKGPVEVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1266
[25][TOP]
>UniRef100_Q9JAD2 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD2_9VIRU
Length = 1816
Score = 103 bits (258), Expect = 7e-21
Identities = 65/175 (37%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 361
+A + FDE + HAG+VY A + G +V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K Y + V T + LRS+ V P+ S V +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRD 1199
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
YL TQ+EKA L +G N+ T HE QGKTFDNV RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDNVIVVRLKTTENEIYPG 1254
[26][TOP]
>UniRef100_Q9JAD3 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD3_9VIRU
Length = 1816
Score = 102 bits (254), Expect = 2e-20
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 361
+A + FDE + HAG+VY A + G +V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K Y + V T + LRS+ V P+ S V +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRD 1199
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
YL TQ+EKA L +G N+ T HE QGKTF+NV RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFENVIVVRLKTTENEIYPG 1254
[27][TOP]
>UniRef100_Q9WJD7 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus
RepID=Q9WJD7_9VIRU
Length = 1858
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 361
+A + FDE + HAG+VY A + G +VI GD++QIPF++R S ++ KL +
Sbjct: 1122 RAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRVESITLQYSKLVIDET 1181
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K + + V T + V+RS++ V P+ S V +
Sbjct: 1182 EHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPRDVKPMTSVHCVPYFKD 1241
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
A YL TQ+EK L KG + T HE QGKTFD+V RL T + G
Sbjct: 1242 AQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVVRLETTENEIYPG 1296
[28][TOP]
>UniRef100_Q9IWB1 Replication protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9IWB1_9VIRU
Length = 1816
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 361
+A + FDE + HAG+VY A + G V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K Y + V T + LRS+ V P+ S V + +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRD 1199
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
YL TQ+EKA L +G N+ T HE QGKTFD+V RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1254
[29][TOP]
>UniRef100_Q9DJG6 Replication protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9DJG6_9VIRU
Length = 1816
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 361
+A + FDE + HAG+VY A + G V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K Y + V T + LRS+ V P+ S V + +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRD 1199
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
YL TQ+EKA L +G N+ T HE QGKTFD+V RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1254
[30][TOP]
>UniRef100_Q91QY9 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus
RepID=Q91QY9_9VIRU
Length = 1858
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 361
+A + FDE + HAG+VY A + G +VI GD++QIPF++R S ++ KL +
Sbjct: 1122 RAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRVESITLQYSKLVIDET 1181
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K + + V T + V+RS++ V P+ S V +
Sbjct: 1182 EHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPRDVKPMTSVHCVPYFKD 1241
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
A YL TQ+EK L KG + T HE QGKTFD+V RL T + G
Sbjct: 1242 AQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1296
[31][TOP]
>UniRef100_Q91DN3 Replication protein n=2 Tax=Soil-borne wheat mosaic virus
RepID=Q91DN3_SBWMV
Length = 1816
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 361
+A + FDE + HAG+VY A + G V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K Y + V T + LRS+ V P+ S V + +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRD 1199
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
YL TQ+EKA L +G N+ T HE QGKTFD+V RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1254
[32][TOP]
>UniRef100_B3IUH4 p212 n=2 Tax=Soil-borne wheat mosaic virus RepID=B3IUH4_SBWMV
Length = 1858
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 361
+A + FDE + HAG+VY A + G +VI GD++QIPF++R S ++ KL +
Sbjct: 1122 RAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRVESITLQYSKLVIDET 1181
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K + + V T + V+RS++ V P+ S V +
Sbjct: 1182 EHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPRDVKPMTSVHCVPYFKD 1241
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
A YL TQ+EK L KG + T HE QGKTFD+V RL T + G
Sbjct: 1242 AQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1296
[33][TOP]
>UniRef100_Q9JGK3 152-kDa protein n=1 Tax=Soil-borne wheat mosaic virus
RepID=Q9JGK3_SBWMV
Length = 1334
Score = 101 bits (251), Expect = 4e-20
Identities = 70/177 (39%), Positives = 91/177 (51%), Gaps = 8/177 (4%)
Frame = -2
Query: 540 VKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GK 364
++A + FDE + HAG VY A L G +VI GD++QIPFV+R S + KL K
Sbjct: 1105 LRATTVHFDEALMTHAGAVYFCADLLGARKVICQGDSQQIPFVNRVESIKLQFAKLVIDK 1164
Query: 363 VERKLITWRSPADATYCLE-KYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERN 205
+ +T+RSP D + L K FY R + T + V+RS+ VV P+ S SV
Sbjct: 1165 TDLIRMTYRSPIDVAHYLNYKSFYTGGR-ITTKNEVVRSMSVVGPRNVRPMTSVYSVPYV 1223
Query: 204 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
YL TQ EK L KG N+ T HE QGKTFD+V RL T + G
Sbjct: 1224 PGVQYLTFTQTEKDDLFKALRSKGHVNVNTVHETQGKTFDDVILVRLKTTENEIYPG 1280
[34][TOP]
>UniRef100_Q2F3J8 Replicase (Fragment) n=1 Tax=Blackberry chlorotic ringspot virus
RepID=Q2F3J8_9BROM
Length = 197
Score = 100 bits (250), Expect = 6e-20
Identities = 48/80 (60%), Positives = 58/80 (72%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM S + RL+FDECFL HAG +YAAATLA EVI GDTEQ+PF+SR P F +HH
Sbjct: 117 LMLKSWFSSDRLLFDECFLTHAGCIYAAATLAQVKEVIALGDTEQVPFISRLPEFRVQHH 176
Query: 378 KLTGKVERKLITWRSPADAT 319
KL+GK+E + T+R P DAT
Sbjct: 177 KLSGKIEVQTTTYRCPRDAT 196
[35][TOP]
>UniRef100_Q9JAD4 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD4_9VIRU
Length = 1816
Score = 100 bits (249), Expect = 7e-20
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 361
+A + FDE + HAG+VY A + G V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 199
E +T+RSP D + L K Y + V T + LRS+ V P+ S V +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRGAKPMTSVHCVPYQRD 1199
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
YL TQ+EK+ L +G N+ T HE QGKTFD+V RL T + G
Sbjct: 1200 TQYLTFTQSEKSDLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1254
[36][TOP]
>UniRef100_Q9QBU0 Polymerase n=2 Tax=Potato mop-top virus RepID=Q9QBU0_9VIRU
Length = 1303
Score = 97.1 bits (240), Expect = 8e-19
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 6/181 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
L++ + +A L FDE + HAG+VY A VI GD++QIPF++R S R+
Sbjct: 1071 LLNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSVICQGDSQQIPFINRVESITLRYS 1130
Query: 378 KL-TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPVS 217
KL V K +T+RSP D A+Y +K FY N ++RS++ V + S S
Sbjct: 1131 KLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVTSANP-LVRSLKTVGPRDGMTSIYS 1189
Query: 216 VERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + YL Q+EK ++ Q +G N+ T HE+QGKT+DNV CRL T +
Sbjct: 1190 IPKIPGTQYLTFLQSEKEEMR-QYLGRGNWNVNTVHESQGKTYDNVVLCRLKATDNEIYP 1248
Query: 36 G 34
G
Sbjct: 1249 G 1249
[37][TOP]
>UniRef100_Q80A46 RNA-dependent RNA polymerase n=1 Tax=Potato mop-top virus
RepID=Q80A46_9VIRU
Length = 1303
Score = 97.1 bits (240), Expect = 8e-19
Identities = 66/181 (36%), Positives = 96/181 (53%), Gaps = 6/181 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
L++ + +A L FDE + HAG+VY A VI GD++QIPF++R S R+
Sbjct: 1071 LLNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSVICQGDSQQIPFINRVESITLRYS 1130
Query: 378 KL-TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPVS 217
KL V K +T+RSP D A+Y +K FY N ++RS++ V + S S
Sbjct: 1131 KLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVTSANP-LVRSLKTVGPRDGMTSIYS 1189
Query: 216 VERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + YL Q+EK ++ Q +G N+ T HE+QGKT+DNV CRL T +
Sbjct: 1190 IPKIPGTQYLTFLQSEKEEMR-QYLGRGNWNVNTVHESQGKTYDNVVLCRLKATDNEIYP 1248
Query: 36 G 34
G
Sbjct: 1249 G 1249
[38][TOP]
>UniRef100_Q9JGJ7 145-kDa protein n=2 Tax=Sorghum chlorotic spot virus
RepID=Q9JGJ7_9VIRU
Length = 1277
Score = 96.7 bits (239), Expect = 1e-18
Identities = 69/172 (40%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKL 349
L FDE + HAG+VY A L G ++I GD++QIPFV+R S R+ L K ++
Sbjct: 1053 LHFDEALMAHAGMVYFCADLLGARKLICQGDSQQIPFVNRVESITLRYANLVIDKTDKIR 1112
Query: 348 ITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALY 190
T+RSP D A Y K +Y R TNS RS+ VV P+ S V Y
Sbjct: 1113 HTYRSPIDVACYLTMKGYYGADRITTTNSDG-RSLGVVGPRHEKPMTSVYCVPYLAGVQY 1171
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
L TQAEK L KG ++ T HEAQGKTF++V RL T + G
Sbjct: 1172 LTFTQAEKEDLHKALRSKGPVSVSTVHEAQGKTFNDVILVRLKTTENEIYPG 1223
[39][TOP]
>UniRef100_C8KH75 1a protein n=1 Tax=Melandrium yellow fleck virus RepID=C8KH75_9BROM
Length = 948
Score = 92.8 bits (229), Expect = 2e-17
Identities = 67/181 (37%), Positives = 92/181 (50%), Gaps = 16/181 (8%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 358
K +R++ DE L H G + A A ++GC EV+ FGDTEQI F SR+ +F +H+ +
Sbjct: 735 KCKRVLIDEAGLMHYGQLLAVAAISGCDEVVAFGDTEQISFKSRDVTFRMKHNAINYD-S 793
Query: 357 RKLI--TWRSPADATYCLEKYFYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNT 202
R+L+ T+R P D ++ K R K N S V +S+ I+SP +
Sbjct: 794 RELVKTTYRCPQDVVDAVKLLKRKCGNRGSKYNDWVSKSTVRKSLYKRSISSPTQINIEV 853
Query: 201 NALYLCHTQAEKAVLKAQTHLKGC--------DNIFTTHEAQGKTFDNVYFCRLTRTSTS 46
N YL TQ++KA L QT K +NI T HEAQG + DNV RL T
Sbjct: 854 NKFYLTMTQSDKAAL--QTRAKDFSLSKDWIENNIKTVHEAQGISVDNVVLVRLKSTKCD 911
Query: 45 L 43
L
Sbjct: 912 L 912
[40][TOP]
>UniRef100_Q8JVK7 Replicase large subunit n=2 Tax=Paprika mild mottle virus
RepID=Q8JVK7_PMMV
Length = 1616
Score = 92.0 bits (227), Expect = 3e-17
Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 361
+RL DE + H G VY TL+ C E FGDT+QIP+++R +F F H + +
Sbjct: 900 KRLFIDEGLMLHPGCVYFLVTLSLCDEAFVFGDTQQIPYINRVQNFPFPKHFSKLIVDET 959
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 190
E++ T R P D T+ L + + + V T S RS+ V +N ++ T L
Sbjct: 960 EKRRTTLRCPVDVTHFLNQRY---EGAVTTTSTTTRSVGVDVVNGAATMNPVTRPLKGKI 1016
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K L + +G +N+ T HE QG+T+D+V RLT T + P
Sbjct: 1017 ITFTQSDKITLAS----RGYENVNTVHEIQGETYDDVCLVRLTPTPIHIIARDSP 1067
[41][TOP]
>UniRef100_O90699 Putative uncharacterized protein n=2 Tax=Beet virus Q
RepID=O90699_9VIRU
Length = 1818
Score = 92.0 bits (227), Expect = 3e-17
Identities = 61/180 (33%), Positives = 89/180 (49%), Gaps = 5/180 (2%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ +A L FDE + HAG VY A + VI GD++QIPFV R ++
Sbjct: 1078 IMNDRFSRANVLHFDEALMAHAGTVYFCADMLSARTVICQGDSQQIPFVPRVEGITLKYA 1137
Query: 378 KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPVSV 214
KL V K +T+RSP D L + Y + + + LRS++ + + S S+
Sbjct: 1138 KLKIDNVVEKRLTYRSPLDVAAFLTRKGYYGNSVIMSANETLRSMKTIGPRTGMTSIYSI 1197
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
+ N YL TQAEK ++ KG + T HE QGKT++NV RL T+ + G
Sbjct: 1198 PKVANCQYLTFTQAEKEEMEKYLG-KGKWGVNTVHECQGKTYENVVLVRLKSTANEIYPG 1256
[42][TOP]
>UniRef100_B6E276 Replicase large subunit n=2 Tax=Hibiscus latent Fort Pierce virus
RepID=B6E276_9VIRU
Length = 1646
Score = 91.3 bits (225), Expect = 5e-17
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ L DE + H G+V L+ C++ +GDT+QIPF++R +F + H
Sbjct: 914 LMNPKPFTYDTLWIDEGLMLHTGMVNYCVLLSHCTKCFIYGDTQQIPFINRVMNFDYPGH 973
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T E++ IT R P D T+ L + + K PV + S V RS+E + P E
Sbjct: 974 LRTIVVDDTEKRRITSRCPLDVTFYLTQRY---KGPVMSTSSVTRSVETKFVAGPARFEP 1030
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
L + TQA+K LK KG +++ T HE QG+TF+ V RLT T ++ +
Sbjct: 1031 RATPLPGKIVTFTQADKETLKK----KGYNDVHTVHEIQGETFNEVSLVRLTATPLNIIS 1086
Query: 36 GRDP 25
P
Sbjct: 1087 PESP 1090
[43][TOP]
>UniRef100_Q05983 Non-structural polyprotein protein n=1 Tax=Raspberry bushy dwarf
virus RepID=Q05983_RBDV
Length = 1694
Score = 90.1 bits (222), Expect = 1e-16
Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 11/187 (5%)
Frame = -2
Query: 558 LMSASAV-KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRH 382
L+S S L DE L H G++ A ++G +V FGD+EQIPF +R F ++
Sbjct: 909 LLSPSVTGSCDELFIDEYGLSHPGILLLAIHISGIRKVTLFGDSEQIPFCNRLADFPLKY 968
Query: 381 HK-----LTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINS--- 226
+ L E + T+R P D T L+K YK K P+KT S V SI + PI S
Sbjct: 969 NSVEDVGLNFDREIRSTTYRCPQDITLSLQK-MYKTK-PIKTVSTVESSITIKPIKSEFE 1026
Query: 225 -PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRLTRTS 52
P+ + LY+C T+ ++++LK + + + + T H AQG ++ NV + RLTRT
Sbjct: 1027 IPLPNAFDGPVLYICMTKHDESLLKLRWAKENISSEVRTVHAAQGLSYKNVVYFRLTRTD 1086
Query: 51 TSLTTGR 31
L T R
Sbjct: 1087 NDLYTKR 1093
[44][TOP]
>UniRef100_Q9WJD8 (PEBV) genomic RNA1 for 141K, 201K, 30K and 12K proteins n=2 Tax=Pea
early-browning virus RepID=Q9WJD8_PEBV
Length = 1766
Score = 89.0 bits (219), Expect = 2e-16
Identities = 66/172 (38%), Positives = 86/172 (50%), Gaps = 6/172 (3%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+V+ A +A +VI GD +QI + R R L G+ VE
Sbjct: 1032 LHFDEALMAHAGMVFFCAQIAKAKKVICQGDQKQIAYKPRVSQLTLRFTSLIGRFDEVEE 1091
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K +++R P D L++ FY K V T + VLRS++V I S VE YL Q
Sbjct: 1092 KRMSYRCPVDVALTLDR-FYTGK--VVTKNSVLRSMDVKRIGSKEQVEMEHGIQYLTFLQ 1148
Query: 174 AEK---AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK A L Q +K N T HEAQGKTF V RL T L G++
Sbjct: 1149 SEKKDIANLLCQRKVKSFVN--TVHEAQGKTFKKVRLVRLKPTDDVLARGQE 1198
[45][TOP]
>UniRef100_C7U0R4 Putative 204K replicase protein n=2 Tax=Beet soil-borne virus
RepID=C7U0R4_9VIRU
Length = 1778
Score = 89.0 bits (219), Expect = 2e-16
Identities = 66/182 (36%), Positives = 94/182 (51%), Gaps = 7/182 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S +
Sbjct: 1038 LMNDKDSRAKVLHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYA 1097
Query: 378 KL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPV 220
KL T VE++L T+RSP D A + K FY + N RS+ VV + S
Sbjct: 1098 KLEITNVVEKRL-TYRSPLDVACFLTRKNFYGTSTVMSANP-TGRSMSVVGPRDGMTSNY 1155
Query: 219 SVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 40
S+ + A YL TQ+EK + KG ++ T HE+QGKT+D+V RL T +
Sbjct: 1156 SIPKKKGAQYLTFTQSEKEDMVRYLG-KGQWSVNTVHESQGKTYDDVILVRLKPTDNEIY 1214
Query: 39 TG 34
G
Sbjct: 1215 PG 1216
[46][TOP]
>UniRef100_Q9YPH5 209kDa protein n=2 Tax=Broad bean necrosis virus RepID=Q9YPH5_9VIRU
Length = 1821
Score = 88.6 bits (218), Expect = 3e-16
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 7/176 (3%)
Frame = -2
Query: 540 VKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGK 364
++A + FDE + HAG+VY A + + GD++QIPF++R S + KL +
Sbjct: 1078 LRADTVHFDEALMAHAGMVYFIAMMCSAKRIKCQGDSKQIPFINRVESIKLEYAKLDIHE 1137
Query: 363 VERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNT 202
K +T+RSP D Y L K + + + + +LRS++ V P++S + +
Sbjct: 1138 TIAKRLTYRSPLDVAYYLTKKGFYGLDFITSANPLLRSMKTVGPRSSTPMSSIYVIPKTK 1197
Query: 201 NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
A YL TQ EK +K Q G + T HEAQGKTF++V RL T + G
Sbjct: 1198 GASYLTFTQTEKDEMK-QYLGSGDWTVNTVHEAQGKTFNDVILVRLKNTENEIYPG 1252
[47][TOP]
>UniRef100_O56790 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=O56790_9VIRU
Length = 1778
Score = 88.2 bits (217), Expect = 4e-16
Identities = 67/182 (36%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S +
Sbjct: 1038 LMNDKDSRAKILHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYA 1097
Query: 378 KL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPV 220
KL T VE++L T+RSP D A + K FY + + S RSI VV + S
Sbjct: 1098 KLEITNVVEKRL-TYRSPLDVACFLTRKNFYWHFHCYERKSNG-RSISVVGPRDGMTSNY 1155
Query: 219 SVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 40
S+ + A YL TQ+EK + KG ++ T HE+QGKT+D+V RL T +
Sbjct: 1156 SIPKKKGAQYLTFTQSEKEDMVRYLG-KGQWSVNTVHESQGKTYDDVILVRLKPTDNEIY 1214
Query: 39 TG 34
G
Sbjct: 1215 PG 1216
[48][TOP]
>UniRef100_C5IXG8 204 kDa protein n=1 Tax=Beet soil-borne virus RepID=C5IXG8_9VIRU
Length = 1778
Score = 87.4 bits (215), Expect = 7e-16
Identities = 66/182 (36%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S +
Sbjct: 1038 LMNDKDSRAKVLHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYA 1097
Query: 378 KL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPV 220
KL T VE++L T+RSP D A + K FY + + S RS+ VV + S
Sbjct: 1098 KLEITNVVEKRL-TYRSPLDVACFLTRKNFYGHFHCYERKSNG-RSMSVVGPRDGMTSNY 1155
Query: 219 SVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 40
S+ + A YL TQ+EK + KG ++ T HE+QGKT+D+V RL T +
Sbjct: 1156 SIPKKKGAQYLTFTQSEKEDIVRYLG-KGQWSVNTVHESQGKTYDDVILVRLKPTDNEIY 1214
Query: 39 TG 34
G
Sbjct: 1215 PG 1216
[49][TOP]
>UniRef100_B4X9D6 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D6_9VIRU
Length = 1778
Score = 87.4 bits (215), Expect = 7e-16
Identities = 66/182 (36%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S +
Sbjct: 1038 LMNDKDSRAKVLHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYA 1097
Query: 378 KL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPV 220
KL T VE++L T+RSP D A + K FY + + S RS+ VV + S
Sbjct: 1098 KLEITNVVEKRL-TYRSPLDVACFLTRKNFYGHFHCYERKSNG-RSMSVVGPRDGMTSNY 1155
Query: 219 SVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 40
S+ + A YL TQ+EK + KG ++ T HE+QGKT+D+V RL T +
Sbjct: 1156 SIPKKKGAQYLTFTQSEKEDMVRYLG-KGQWSVNTVHESQGKTYDDVILVRLKPTDNEIY 1214
Query: 39 TG 34
G
Sbjct: 1215 PG 1216
[50][TOP]
>UniRef100_Q9WJQ9 Putative uncharacterized protein (Fragment) n=1 Tax=Tobacco rattle
virus RepID=Q9WJQ9_9VIRU
Length = 400
Score = 86.3 bits (212), Expect = 1e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 186 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 245
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 246 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 302
Query: 174 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 303 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 352
[51][TOP]
>UniRef100_Q9J942 194 kDa protein n=2 Tax=Tobacco rattle virus RepID=Q9J942_9VIRU
Length = 1707
Score = 86.3 bits (212), Expect = 1e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 174 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[52][TOP]
>UniRef100_Q9DL34 RNA-dependent RNA polymerase n=2 Tax=Tobacco rattle virus
RepID=Q9DL34_9VIRU
Length = 1707
Score = 86.3 bits (212), Expect = 1e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 174 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[53][TOP]
>UniRef100_Q8JU32 Putative replicase n=2 Tax=Tobacco rattle virus RepID=Q8JU32_9VIRU
Length = 1707
Score = 86.3 bits (212), Expect = 1e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 174 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[54][TOP]
>UniRef100_O56250 RNA polymerase n=1 Tax=Tobacco rattle virus RepID=O56250_9VIRU
Length = 1707
Score = 86.3 bits (212), Expect = 1e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVVAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 174 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[55][TOP]
>UniRef100_P05080 134 kDa protein n=2 Tax=Tobacco rattle virus RepID=194K_TRVSY
Length = 1707
Score = 86.3 bits (212), Expect = 1e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 174 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[56][TOP]
>UniRef100_Q70BW7 Replicase n=2 Tax=Tobacco rattle virus RepID=Q70BW7_9VIRU
Length = 1707
Score = 85.9 bits (211), Expect = 2e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVNLRFSSLVGKFDIVTE 1032
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 174 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELINLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[57][TOP]
>UniRef100_B4X9D8 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D8_9VIRU
Length = 1778
Score = 85.9 bits (211), Expect = 2e-15
Identities = 65/182 (35%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S +
Sbjct: 1038 LMNDKDSRAKVLHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYA 1097
Query: 378 KL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPV 220
KL T VE++L T+RSP D A + K FY + + S RS+ VV + S
Sbjct: 1098 KLEITNVVEKRL-TYRSPLDVACFLTRKNFYGHFHCYERKSNG-RSMSVVGPRDGMTSNY 1155
Query: 219 SVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 40
S+ + A YL TQ+EK + KG ++ T H++QGKT+D+V RL T +
Sbjct: 1156 SIPKKKGAQYLTFTQSEKEDMVRYLG-KGQWSVNTVHKSQGKTYDDVILVRLKPTDNEIY 1214
Query: 39 TG 34
G
Sbjct: 1215 PG 1216
[58][TOP]
>UniRef100_Q9DUT3 Genomic RNA1 for 1a protein, (ORF1) n=1 Tax=Pelargonium zonate spot
virus RepID=Q9DUT3_PZSV
Length = 962
Score = 85.5 bits (210), Expect = 2e-15
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 16/200 (8%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM A K +R++FDE L H G + A T++G E+IGFGD+EQI FVSR+ F ++H
Sbjct: 751 LMHGVAHKVKRVLFDEVSLVHFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMKYH 810
Query: 378 KLT-GKVERKLITWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPV 220
KL+ ++++ T+R P D C++ K R K T S V +S+ ++S
Sbjct: 811 KLSPDSSDQQIRTFRCPKDVVECVKIMARKVGARGSKYNNWFTTSAVRKSLGYHKVSSIN 870
Query: 219 SVERNTNALYLCHTQAEKAVLKAQTH-------LKGCDNIF-TTHEAQGKTFDNVYFCRL 64
+ YL TQA+KA L ++ + D + TTHE+QG + V R
Sbjct: 871 ESPLRPDVHYLTMTQADKASLLSKARETRFRPSVSTIDEVIKTTHESQGISVPKVILWRG 930
Query: 63 TRTSTSLTTGRDPIN-GPCH 7
T L T + + G CH
Sbjct: 931 KSTKCDLFTDKMELRFGCCH 950
[59][TOP]
>UniRef100_Q9Q6Q4 Helicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1
RepID=Q9Q6Q4_9CLOS
Length = 398
Score = 84.3 bits (207), Expect = 6e-15
Identities = 59/171 (34%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Frame = -2
Query: 522 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 352
+ DE ++ H G+ G EVI +GD QIPF++R +FV + + +++
Sbjct: 163 LIDEVYMLHKGMFQLTVVSMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEEQIDYT 222
Query: 351 LITWRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 193
I++R PAD Y L K Y N + R LRS E VPI +P +
Sbjct: 223 DISYRCPADVCYVLSSMTDARGKKMYPNGVFPNGDVRPLRSFEKVPIATPEDALLYEADV 282
Query: 192 YLCHTQAEKAVL-KAQTHL-----KGCDNIFTTHEAQGKTFDNVYFCRLTR 58
YL TQ EKA + KA + K ++ TTHEAQGKT++NV RL +
Sbjct: 283 YLTMTQNEKAEMQKAVAKMEVVAGKKRPDVITTHEAQGKTYENVVLVRLKK 333
[60][TOP]
>UniRef100_Q8JW08 1a protein n=1 Tax=Spring beauty latent virus RepID=Q8JW08_9BROM
Length = 958
Score = 84.3 bits (207), Expect = 6e-15
Identities = 64/180 (35%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 358
K RL+ DE L H G + A A L GC V+ FGDTEQI F SR+ +F FRH + + +
Sbjct: 744 KCSRLLIDEAGLLHYGQLLAVAALCGCETVLAFGDTEQISFKSRDVTFKFRHAVI--EYD 801
Query: 357 RKLI---TWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERN 205
R+ + T+R P D ++K K R K T S V S+ + ++S V
Sbjct: 802 RRDVVTETFRCPEDVISAIKKLKRKCGNRDSKYLSWRTQSSVKTSLGMRSVSSVTQVNIE 861
Query: 204 TNALYLCHTQAEKAVLKAQTHLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ YL TQA+KA L ++ D +I T HEAQG + D+V RL L
Sbjct: 862 KHKFYLTMTQADKAALVSRAKDFPVDKTWVDKHIKTVHEAQGVSVDHVVLVRLKSVKCDL 921
[61][TOP]
>UniRef100_A3QVG6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=A3QVG6_TMGMV
Length = 1609
Score = 83.6 bits (205), Expect = 9e-15
Identities = 60/175 (34%), Positives = 87/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++GC+ +GDT+QIPF++R +F + H KL +V
Sbjct: 896 KRLFIDEGLMLHTGCVNFLVLISGCNIAYIYGDTQQIPFINRVQNFPYPKHFEKLQVDEV 955
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP---VSVERNTNALY 190
E + T R P D + L+ K + V T S V RS+ I SV +
Sbjct: 956 EMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIGGKGVLNSVSKPLKGKI 1012
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQA+K L+ KG N+ T HE QG+TF++V RLT T +L + P
Sbjct: 1013 VTFTQADKFELEE----KGYKNVNTVHEIQGETFEDVSLVRLTATPLTLISKSSP 1063
[62][TOP]
>UniRef100_Q8V703 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=Q8V703_TMGMV
Length = 1609
Score = 83.2 bits (204), Expect = 1e-14
Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++GC +GDT+QIPF++R +F + H KL +V
Sbjct: 896 KRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQNFPYPKHFEKLQVDEV 955
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP---VSVERNTNALY 190
E + T R P D + L+ K + V T S V RS+ I SV +
Sbjct: 956 EMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIGGKGVLNSVSKPLKGKI 1012
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQA+K L+ KG N+ T HE QG+TF++V RLT T +L + P
Sbjct: 1013 VTFTQADKFELEE----KGYKNVNTVHEIQGETFEDVSLVRLTATPLTLISKSSP 1063
[63][TOP]
>UniRef100_P18339 Replicase small subunit n=1 Tax=Tobacco mild green mosaic virus
RepID=RDRP_TMGMV
Length = 1609
Score = 83.2 bits (204), Expect = 1e-14
Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM +RL DE + H G V ++GC +GDT+QIPF++R +F + H
Sbjct: 887 LMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQNFPYPKH 946
Query: 378 --KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP---VS 217
KL +VE + T R P D + L+ K + V T S V RS+ I S
Sbjct: 947 FEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIGGKGVLNS 1003
Query: 216 VERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
V + + TQA+K L+ KG N+ T HE QG+TF++V RLT T +L +
Sbjct: 1004 VSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDVSLVRLTATPLTLIS 1059
Query: 36 GRDP 25
P
Sbjct: 1060 KSSP 1063
[64][TOP]
>UniRef100_B2C4F9 Methyl transferase/helicase n=1 Tax=Grapevine leafroll-associated
virus 3 RepID=B2C4F9_9CLOS
Length = 2237
Score = 82.8 bits (203), Expect = 2e-14
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 352
+R++ DE ++ H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063
Query: 351 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 202
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 201 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+YLC TQ EK+ +K KG + + T HEAQGKTF +V R + SL T
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFT 2179
[65][TOP]
>UniRef100_B3FQ64 Polyprotein (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3
RepID=B3FQ64_9CLOS
Length = 2233
Score = 82.4 bits (202), Expect = 2e-14
Identities = 58/176 (32%), Positives = 80/176 (45%), Gaps = 11/176 (6%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 352
+R++ DE ++ H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFAIGASEGLFFGDINQIPFINREKVFRMDCAAFVPKKESV 2063
Query: 351 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 202
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSVTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 201 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+YLC TQ EK+ +K KG + + T HEAQGKTF +V R SL T
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKNADDSLFT 2179
[66][TOP]
>UniRef100_A1YLW4 Replicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1
RepID=A1YLW4_9CLOS
Length = 381
Score = 82.4 bits (202), Expect = 2e-14
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
Frame = -2
Query: 522 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 352
+ DE ++ H G+ G EVI +GD QIPF++R +FV + + +E
Sbjct: 146 LIDEVYMLHKGMFQLTVAAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYT 205
Query: 351 LITWRSPADATYCLEKY-------FYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 193
I++R PAD Y L Y N ++R LRS E VPI +P +
Sbjct: 206 DISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADV 265
Query: 192 YLCHTQAEKAVLK---AQTHL---KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGR 31
YL TQ EKA ++ A+ + K ++ TTHEAQGKT+ +V RL + + T +
Sbjct: 266 YLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFTRK 325
Query: 30 DPI 22
I
Sbjct: 326 PHI 328
[67][TOP]
>UniRef100_P27752 Methyltransferase n=1 Tax=Cowpea chlorotic mottle virus
RepID=ORF1A_CCMV
Length = 958
Score = 82.4 bits (202), Expect = 2e-14
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 358
+ +RL+ DE L H G + A A L C V+ FGDTEQI F SR+ +F ++ L
Sbjct: 745 RCKRLLVDEAGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-S 803
Query: 357 RKLI--TWRSPADATYCLEKYFYKNKRPV-----KTNSRVLRSIEVVPINSPVSVERNTN 199
R ++ TWR P D ++ R K++S+V RSI I SP+ V +
Sbjct: 804 RDIVTETWRCPQDVISAVQTLKRGGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSRE 863
Query: 198 ALYLCHTQAEKAVLKAQT-HLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
YL TQA+KA L ++ D +I T HEAQG + D+ RL T L
Sbjct: 864 KFYLTMTQADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDL 922
[68][TOP]
>UniRef100_Q65661 1a protein n=1 Tax=Brome mosaic virus RepID=Q65661_BMV
Length = 961
Score = 82.0 bits (201), Expect = 3e-14
Identities = 67/179 (37%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Frame = -2
Query: 528 RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL 349
RL+ DE L H G + A L+ CS+V+ FGDTEQI F SR+ F H L K +R+
Sbjct: 751 RLLVDEAGLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRD 808
Query: 348 I---TWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNA 196
+ T+R P D + K R K + S+V RS+ I S + V + N
Sbjct: 809 VVHKTYRCPQDVIAAVNLLKRKCGNRDTKYQSWTSESKVSRSLAKRRITSVLQVTIDPNR 868
Query: 195 LYLCHTQAEKAVLKAQTHLKGC--------DNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
YL TQA+KA L QT K +I T HEAQG + DNV RL T L
Sbjct: 869 TYLTMTQADKAAL--QTRAKDFPVSKDWIDGHIKTVHEAQGISVDNVTLVRLKSTKCDL 925
[69][TOP]
>UniRef100_Q1XF44 Replicase large subunit n=2 Tax=Streptocarpus flower break virus
RepID=Q1XF44_9VIRU
Length = 1606
Score = 82.0 bits (201), Expect = 3e-14
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 7/185 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
L+ + +RL DE + H G V A + C EV+ +GDT QIPF++R +F + H
Sbjct: 876 LIHMKGTQVKRLFIDEGLMLHTGCVNFLALFSHCEEVLVYGDTHQIPFINRVANFPYPSH 935
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
VE++ +T R PAD T+ L Y K V S +LRS+E + +
Sbjct: 936 FAQLQYDSVEKRRVTLRCPADVTHHLNSQ-YDGK--VMCTSSILRSVECEVVRGKAVLNP 992
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 40
T L + TQ++K L+ + + + ++ T HE QG+T+++V RLT T +
Sbjct: 993 KTKPLSGKIITFTQSDKLELQNKGYGEVDVLDVNTVHEIQGETYEHVSLVRLTPTPLEIV 1052
Query: 39 TGRDP 25
+ P
Sbjct: 1053 SHGSP 1057
[70][TOP]
>UniRef100_D0EWY6 194 kDa readthrough protein n=2 Tax=Tobacco rattle virus
RepID=D0EWY6_9VIRU
Length = 1707
Score = 82.0 bits (201), Expect = 3e-14
Identities = 60/170 (35%), Positives = 79/170 (46%), Gaps = 4/170 (2%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 355
L FDE + HAG+VY A +A I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTE 1032
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 175
K T+RSPAD L K++ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKFYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 174 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELMNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[71][TOP]
>UniRef100_A0SL67 1a n=1 Tax=Brome mosaic virus RepID=A0SL67_BMV
Length = 961
Score = 82.0 bits (201), Expect = 3e-14
Identities = 67/179 (37%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Frame = -2
Query: 528 RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL 349
RL+ DE L H G + A L+ CS+V+ FGDTEQI F SR+ F H L K +R+
Sbjct: 751 RLLVDEAGLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRD 808
Query: 348 I---TWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNA 196
+ T+R P D + K R K + S+V RS+ I S + V + N
Sbjct: 809 VVHKTYRCPQDVIAAVNLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSVLQVTIDPNR 868
Query: 195 LYLCHTQAEKAVLKAQTHLKGC--------DNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
YL TQA+KA L QT K +I T HEAQG + DNV RL T L
Sbjct: 869 TYLTMTQADKAAL--QTRAKDFPVSKDWIDGHIKTVHEAQGISVDNVALVRLKSTKCDL 925
[72][TOP]
>UniRef100_O71188 P_protease/methyl transferase/helicase (Fragment) n=2 Tax=Grapevine
leafroll-associated virus 3 RepID=O71188_9CLOS
Length = 2233
Score = 81.6 bits (200), Expect = 4e-14
Identities = 58/176 (32%), Positives = 80/176 (45%), Gaps = 11/176 (6%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 352
+R++ DE + H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063
Query: 351 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 202
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 201 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+YLC TQ EK+ +K KG + + T HEAQGKTF +V R + SL T
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFT 2179
[73][TOP]
>UniRef100_Q9DJM1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM1_9CLOS
Length = 371
Score = 81.6 bits (200), Expect = 4e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSAGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 AR 237
[74][TOP]
>UniRef100_Q8QZF3 126 kDa protein n=1 Tax=Pepper mild mottle virus RepID=Q8QZF3_9VIRU
Length = 1117
Score = 81.6 bits (200), Expect = 4e-14
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+QIP+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + K + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069
[75][TOP]
>UniRef100_Q84918 195K protein n=2 Tax=Pepper ringspot virus RepID=Q84918_9VIRU
Length = 1698
Score = 81.6 bits (200), Expect = 4e-14
Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 4/172 (2%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---V 361
+ L FDE + HAG+V+ A LA V+ GD +QI + R + L G+ V
Sbjct: 963 ETLHFDEALMAHAGMVFFCAQLAKAKLVVCQGDQKQIAYKPRVAQVNLKFLSLVGRFDEV 1022
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCH 181
E K +T+R P D L++ FY K V T + VLRS+ I+S V YL
Sbjct: 1023 EEKRLTYRCPIDVALSLDR-FYTGK--VVTKNNVLRSMTTKRISSKEQVTMEKGVQYLTF 1079
Query: 180 TQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 28
Q+EK + L+ + + T HEAQGKTF V R T L G++
Sbjct: 1080 LQSEKKEIATMLALRKIEAAVNTVHEAQGKTFKKVILVRTKVTDDVLARGQE 1131
[76][TOP]
>UniRef100_Q5DWU9 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q5DWU9_9VIRU
Length = 1612
Score = 81.6 bits (200), Expect = 4e-14
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+QIP+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + K + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069
[77][TOP]
>UniRef100_Q4W8Q6 126k protein n=1 Tax=Pepper mild mottle virus RepID=Q4W8Q6_9VIRU
Length = 1117
Score = 81.6 bits (200), Expect = 4e-14
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+QIP+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + K + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069
[78][TOP]
>UniRef100_Q1XG51 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q1XG51_9VIRU
Length = 1612
Score = 81.6 bits (200), Expect = 4e-14
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+QIP+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + K + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069
[79][TOP]
>UniRef100_A4PE19 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=A4PE19_9VIRU
Length = 1612
Score = 81.6 bits (200), Expect = 4e-14
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+QIP+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + K + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069
[80][TOP]
>UniRef100_A4LAL6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=A4LAL6_TMGMV
Length = 1609
Score = 81.6 bits (200), Expect = 4e-14
Identities = 62/184 (33%), Positives = 87/184 (47%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM +RL DE + H G V ++GC +GDT+QIPF++R +F + H
Sbjct: 887 LMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQNFPYPKH 946
Query: 378 --KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP---VS 217
KL +VE T R P D + L+ K + V T S V RS+ I S
Sbjct: 947 FEKLQVDEVEMGRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIGGKGVLNS 1003
Query: 216 VERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
V + + TQA+K L+ KG N+ T HE QG+TF++V RLT T +L +
Sbjct: 1004 VSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDVSLVRLTATPLTLIS 1059
Query: 36 GRDP 25
P
Sbjct: 1060 KSSP 1063
[81][TOP]
>UniRef100_P29098 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain
Spain) RepID=RDRP_PMMVS
Length = 1612
Score = 81.6 bits (200), Expect = 4e-14
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+QIP+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + K + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069
[82][TOP]
>UniRef100_P89657 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain
Japan) RepID=RDRP_PMMVJ
Length = 1612
Score = 81.6 bits (200), Expect = 4e-14
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+QIP+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFPYPKHLSQLEVDAV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + K + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069
[83][TOP]
>UniRef100_Q9IFX0 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9IFX0_9CLOS
Length = 3115
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2773 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 2832
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 2833 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVIN 2887
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2888 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 2945
Query: 72 CR 67
R
Sbjct: 2946 VR 2947
[84][TOP]
>UniRef100_Q9DJR0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR0_9CLOS
Length = 371
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[85][TOP]
>UniRef100_Q9DJQ6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ6_9CLOS
Length = 357
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 58 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 117
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 118 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVIN 172
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 173 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 230
Query: 72 CR 67
R
Sbjct: 231 VR 232
[86][TOP]
>UniRef100_Q9DJQ2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ2_9CLOS
Length = 257
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 58 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 117
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 118 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVIN 172
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 173 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 230
Query: 72 CR 67
R
Sbjct: 231 VR 232
[87][TOP]
>UniRef100_Q9DJP5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP5_9CLOS
Length = 319
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 60 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 119
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 120 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVIN 174
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 175 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 232
Query: 72 CR 67
R
Sbjct: 233 VR 234
[88][TOP]
>UniRef100_Q9DJP3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP3_9CLOS
Length = 368
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 62 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 121
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 122 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVIN 176
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 177 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 234
Query: 72 CR 67
R
Sbjct: 235 VR 236
[89][TOP]
>UniRef100_Q9DJN7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN7_9CLOS
Length = 371
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLDVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEVIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[90][TOP]
>UniRef100_Q9DJN1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJN1_9CLOS
Length = 371
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEVIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[91][TOP]
>UniRef100_Q9DJM8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM8_9CLOS
Length = 371
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T+S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[92][TOP]
>UniRef100_Q9DJM7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM7_9CLOS
Length = 371
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T+S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[93][TOP]
>UniRef100_Q9DJM6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM6_9CLOS
Length = 262
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T+S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[94][TOP]
>UniRef100_Q9DJL6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL6_9CLOS
Length = 371
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPRDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[95][TOP]
>UniRef100_Q8BEM6 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM6_CCMV
Length = 959
Score = 81.3 bits (199), Expect = 5e-14
Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 358
+ +RL+ DE L H G + A A L C V+ FGDTEQI F SR+ +F ++ L
Sbjct: 745 QCKRLLVDEAGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-S 803
Query: 357 RKLI--TWRSPADATYCLEKYFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNT 202
R ++ TWR P D ++ K K++S+V RSI I SP+ V +
Sbjct: 804 RDIVTETWRCPQDVISAVQTLKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSR 863
Query: 201 NALYLCHTQAEKAVLKAQT-HLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
YL TQA+KA L ++ D +I T HEAQG + D+ RL T L
Sbjct: 864 EKFYLTMTQADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDL 923
[96][TOP]
>UniRef100_Q8BEM3 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM3_CCMV
Length = 959
Score = 81.3 bits (199), Expect = 5e-14
Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 358
+ +RL+ DE L H G + A A L C V+ FGDTEQI F SR+ +F ++ L
Sbjct: 745 QCKRLLVDEAGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-S 803
Query: 357 RKLI--TWRSPADATYCLEKYFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNT 202
R ++ TWR P D ++ K K++S+V RSI I SP+ V +
Sbjct: 804 RDIVTETWRCPQDVISAVQTLKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSR 863
Query: 201 NALYLCHTQAEKAVLKAQT-HLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
YL TQA+KA L ++ D +I T HEAQG + D+ RL T L
Sbjct: 864 EKFYLTMTQADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDL 923
[97][TOP]
>UniRef100_Q5K6D3 Replicase large subunit n=2 Tax=Hibiscus latent Singapore virus
RepID=Q5K6D3_9VIRU
Length = 1638
Score = 81.3 bits (199), Expect = 5e-14
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 7/185 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF--- 388
LM+ + + L DE + H G + L+ C + FGDT+QIPF++R +F +
Sbjct: 909 LMNPKPFEYKVLWIDEGLMLHTGAISFCVALSHCEQCYVFGDTQQIPFINRVMNFDYPKT 968
Query: 387 RHHKLTGKVERKLITWRSPADAT-YCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVE 211
+T VE++ IT R P D T Y ++Y K PV + + V RS++ + E
Sbjct: 969 LQTLVTDSVEKRRITSRCPLDVTCYLAQRY----KGPVVSTNNVERSLDTKLVAGAARFE 1024
Query: 210 RNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 40
L + TQA+K LK +G ++ T HE QG+T+ V RLT T S+
Sbjct: 1025 PQLTPLPGKVITFTQADKETLKK----RGYQDVHTVHEVQGETYTEVSLVRLTPTPLSII 1080
Query: 39 TGRDP 25
+ P
Sbjct: 1081 SPDSP 1085
[98][TOP]
>UniRef100_B5THB7 p1a n=1 Tax=Citrus tristeza virus RepID=B5THB7_9CLOS
Length = 3115
Score = 81.3 bits (199), Expect = 5e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2773 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 2832
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 2833 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVIN 2887
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2888 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 2945
Query: 72 CR 67
R
Sbjct: 2946 VR 2947
[99][TOP]
>UniRef100_Q9DJQ5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ5_9CLOS
Length = 368
Score = 80.9 bits (198), Expect = 6e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[100][TOP]
>UniRef100_Q9DJP7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP7_9CLOS
Length = 343
Score = 80.9 bits (198), Expect = 6e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 35 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 94
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 95 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIIN 149
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 150 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 207
Query: 72 CR 67
R
Sbjct: 208 VR 209
[101][TOP]
>UniRef100_Q9DJM9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM9_9CLOS
Length = 371
Score = 80.9 bits (198), Expect = 6e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[102][TOP]
>UniRef100_Q9DJM5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM5_9CLOS
Length = 371
Score = 80.9 bits (198), Expect = 6e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIAYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[103][TOP]
>UniRef100_Q5G7G7 Polyprotein 1a n=2 Tax=Mint virus 1 RepID=Q5G7G7_9CLOS
Length = 2511
Score = 80.9 bits (198), Expect = 6e-14
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ L DECF+ HAG V C I FGD++QI ++ R+ +H
Sbjct: 2199 LMNRCGETCDLLFMDECFMVHAGQVLGIINKTMCKVAILFGDSKQIHYIERDEFVSTVYH 2258
Query: 378 KLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
+ +E I++R P D L K + + + T+S +S+ VV I S V
Sbjct: 2259 DIDSFIEPFCRMYGEISYRCPWDVCEWLSKLYKRQIKSNNTSSIGKQSVSVVNIESVEDV 2318
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNVYFCR 67
+ YL +TQ+EKA L+ + + ++ T HEAQG+TF NVY R
Sbjct: 2319 PFVQSIKYLTYTQSEKAELRRKFEKFSSEPSVNTVHEAQGETFKNVYLVR 2368
[104][TOP]
>UniRef100_Q2LK62 P349 protein n=1 Tax=Citrus tristeza virus RepID=Q2LK62_9CLOS
Length = 3115
Score = 80.9 bits (198), Expect = 6e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2773 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 2832
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 2833 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIIN 2887
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2888 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 2945
Query: 72 CR 67
R
Sbjct: 2946 VR 2947
[105][TOP]
>UniRef100_O10467 347-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=O10467_9CLOS
Length = 3115
Score = 80.9 bits (198), Expect = 6e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2773 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 2832
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 2833 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIIN 2887
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2888 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 2945
Query: 72 CR 67
R
Sbjct: 2946 VR 2947
[106][TOP]
>UniRef100_B5THA5 p1a n=1 Tax=Citrus tristeza virus RepID=B5THA5_9CLOS
Length = 3115
Score = 80.9 bits (198), Expect = 6e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2773 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 2832
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 2833 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIIN 2887
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2888 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 2945
Query: 72 CR 67
R
Sbjct: 2946 VR 2947
[107][TOP]
>UniRef100_A3FG29 Replicase large subunit n=2 Tax=Rehmannia mosaic virus
RepID=A3FG29_9VIRU
Length = 1616
Score = 80.9 bits (198), Expect = 6e-14
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V +++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVSMSLCEIAYVYGDTQQIPYINRVTGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L K + + V + S V RS+ ++ ++ + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKRSVSQEMVSGAATINPISKPLHGKV 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ +G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIISGDSP 1068
[108][TOP]
>UniRef100_P90211 Replicase small subunit n=1 Tax=Obuda pepper virus RepID=RDRP_TMOB
Length = 1616
Score = 80.9 bits (198), Expect = 6e-14
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 361
+RL DE + H G VY L+ C+E FGDT+QIP+++R +F F H + +
Sbjct: 900 KRLFVDEGLMLHPGCVYFLVKLSLCNEAFVFGDTQQIPYINRVQNFPFPQHFSKLIVDET 959
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 190
E++ T R P D T+ L + + V T S+ RS+ + + + T L
Sbjct: 960 EKRRTTLRCPVDVTHFLNQCY---DGAVTTTSKTQRSVGLEVVGGAAVMNPVTKPLKGKI 1016
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K + + +G ++ T HE QG+T++ V RLT T + + P
Sbjct: 1017 VTFTQSDKLTMLS----RGYQDVNTVHEIQGETYEEVSLVRLTPTPIHIISRESP 1067
[109][TOP]
>UniRef100_UPI000019AB7D polyprotein n=2 Tax=Cucurbit yellow stunting disorder virus
RepID=UPI000019AB7D
Length = 2482
Score = 80.5 bits (197), Expect = 8e-14
Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R+H
Sbjct: 1738 LMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICRYH 1797
Query: 378 K---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVVPI 232
K LT K I++R P D Y L Y N PV N VLRS+EV PI
Sbjct: 1798 KDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVEPI 1857
Query: 231 NSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVYFC 70
S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1858 TSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVYLY 1913
Query: 69 RLTR 58
RL +
Sbjct: 1914 RLRK 1917
[110][TOP]
>UniRef100_Q9DTG5 349-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=Q9DTG5_9CLOS
Length = 3132
Score = 80.5 bits (197), Expect = 8e-14
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 13/177 (7%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN V H
Sbjct: 2790 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 2849
Query: 378 KLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
+ +E + +++R P D L K++ ++ T S S+ + IN V
Sbjct: 2850 DIDAFIEPQHRVYGEVSYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDV 2909
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYFCR 67
+++A Y+ +TQAEK L Q HL K + T HE QG+T+ V R
Sbjct: 2910 PYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRLVR 2964
[111][TOP]
>UniRef100_Q9DJN8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN8_9CLOS
Length = 367
Score = 80.5 bits (197), Expect = 8e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[112][TOP]
>UniRef100_Q9DJN6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN6_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 8e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[113][TOP]
>UniRef100_Q9DJN4 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJN4_9CLOS
Length = 370
Score = 80.5 bits (197), Expect = 8e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 62 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 121
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 122 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 176
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 177 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 234
Query: 72 CR 67
R
Sbjct: 235 VR 236
[114][TOP]
>UniRef100_Q9DJN3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN3_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 8e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[115][TOP]
>UniRef100_Q9DJN0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN0_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 8e-14
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +KA L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKADLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DMDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYNVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[116][TOP]
>UniRef100_Q9DJM4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM4_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 8e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[117][TOP]
>UniRef100_Q9DJM3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM3_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 8e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[118][TOP]
>UniRef100_Q8JUV0 1a n=1 Tax=Cucurbit yellow stunting disorder virus RepID=Q8JUV0_9CLOS
Length = 1977
Score = 80.5 bits (197), Expect = 8e-14
Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R+H
Sbjct: 1738 LMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICRYH 1797
Query: 378 K---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVVPI 232
K LT K I++R P D Y L Y N PV N VLRS+EV PI
Sbjct: 1798 KDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVEPI 1857
Query: 231 NSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVYFC 70
S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1858 TSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVYLY 1913
Query: 69 RLTR 58
RL +
Sbjct: 1914 RLRK 1917
[119][TOP]
>UniRef100_Q70UT1 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=Q70UT1_9CLOS
Length = 2483
Score = 80.5 bits (197), Expect = 8e-14
Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R+H
Sbjct: 1739 LMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICRYH 1798
Query: 378 K---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVVPI 232
K LT K I++R P D Y L Y N PV N VLRS+EV PI
Sbjct: 1799 KDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVEPI 1858
Query: 231 NSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVYFC 70
S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1859 TSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVYLY 1914
Query: 69 RLTR 58
RL +
Sbjct: 1915 RLRK 1918
[120][TOP]
>UniRef100_C6F418 ORF1a n=1 Tax=Citrus tristeza virus RepID=C6F418_9CLOS
Length = 3115
Score = 80.5 bits (197), Expect = 8e-14
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2773 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 2832
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 2833 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 2887
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2888 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 2945
Query: 72 CR 67
R
Sbjct: 2946 VR 2947
[121][TOP]
>UniRef100_A5JM41 p227 n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=A5JM41_9CLOS
Length = 1978
Score = 80.5 bits (197), Expect = 8e-14
Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R+H
Sbjct: 1739 LMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICRYH 1798
Query: 378 K---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVVPI 232
K LT K I++R P D Y L Y N PV N VLRS+EV PI
Sbjct: 1799 KDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVEPI 1858
Query: 231 NSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVYFC 70
S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1859 TSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVYLY 1914
Query: 69 RLTR 58
RL +
Sbjct: 1915 RLRK 1918
[122][TOP]
>UniRef100_A5JM40 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=A5JM40_9CLOS
Length = 2483
Score = 80.5 bits (197), Expect = 8e-14
Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R+H
Sbjct: 1739 LMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICRYH 1798
Query: 378 K---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVVPI 232
K LT K I++R P D Y L Y N PV N VLRS+EV PI
Sbjct: 1799 KDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVEPI 1858
Query: 231 NSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVYFC 70
S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1859 TSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVYLY 1914
Query: 69 RLTR 58
RL +
Sbjct: 1915 RLRK 1918
[123][TOP]
>UniRef100_P03588 Methyltransferase n=1 Tax=Brome mosaic virus RepID=ORF1A_BMV
Length = 961
Score = 80.5 bits (197), Expect = 8e-14
Identities = 66/179 (36%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Frame = -2
Query: 528 RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL 349
RL+ DE L H G + A L+ CS+V+ FGDTEQI F SR+ F H L + +R+
Sbjct: 751 RLLVDEAGLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--QYDRRD 808
Query: 348 I---TWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNA 196
+ T+R P D + K R K + S+V RS+ I S + V + N
Sbjct: 809 VVHKTYRCPQDVIAAVNLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQVTIDPNR 868
Query: 195 LYLCHTQAEKAVLKAQTHLKGC--------DNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
YL TQA+KA L QT K +I T HEAQG + DNV RL T L
Sbjct: 869 TYLTMTQADKAAL--QTRAKDFPVSKDWIDGHIKTVHEAQGISVDNVTLVRLKSTKCDL 925
[124][TOP]
>UniRef100_Q9DJR6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR6_9CLOS
Length = 371
Score = 79.7 bits (195), Expect = 1e-13
Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNDL--QKHLGRLTVGRTKAVPIVNTVHEVQGDTYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[125][TOP]
>UniRef100_Q9DJM0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM0_9CLOS
Length = 371
Score = 79.7 bits (195), Expect = 1e-13
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 79
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[126][TOP]
>UniRef100_Q5I2N9 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q5I2N9_9VIRU
Length = 1612
Score = 79.7 bits (195), Expect = 1e-13
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+Q P+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQTPYINRVATFPYPKHLSQLEVDAV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + K + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISKQSP 1069
[127][TOP]
>UniRef100_Q91E35 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q91E35_9VIRU
Length = 1612
Score = 79.3 bits (194), Expect = 2e-13
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKV 361
+RL DE + H G V ++ CSE +GDT+QIP+++R +F + H V
Sbjct: 902 KRLFLDEGLMLHPGCVNFLVGMSLCSEAFIYGDTQQIPYINRVATFPYPKHLSQLEVDVV 961
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---PINSPVSVERNTNA 196
E + T R PAD T+ L + + + V S V RS+ EV+ + +PVS +
Sbjct: 962 ETRRTTLRCPADITFFLNQRY---EGQVMCASSVTRSVSHEVIQGAAVMNPVS--KPLKG 1016
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
+ TQ++K++L + +G +++ T HE QG+TF++V RLT T + + + P
Sbjct: 1017 KVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPTPVGIISRQSP 1069
[128][TOP]
>UniRef100_Q00020 Methyltransferase n=1 Tax=Broad bean mottle virus RepID=ORF1A_BBMV
Length = 966
Score = 79.3 bits (194), Expect = 2e-13
Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 361
+ RL+ DE L H G + A A L CSEV+ FGDTEQI F SR+ +F ++ + K
Sbjct: 753 ECHRLLVDEAGLLHYGQLLAVADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKR 812
Query: 360 ERKLITWRSPADATYCLEKYFYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNTN 199
+ T+R P D ++ K R K N S+V +S+ I S V +
Sbjct: 813 DIVSKTFRCPQDVVSAVKILKRKCANRSSKYNGWVSSSKVEKSLSKSRIVSINQVSMEKH 872
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
YL T+A+KA L ++ G D N+ T HEAQGK D+V RL T L
Sbjct: 873 KFYLTMTEADKAALCSRAKDVGLDKTWVESNMETVHEAQGKAVDHVVLVRLKSTKCDL 930
[129][TOP]
>UniRef100_Q9WID7 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9WID7_9CLOS
Length = 3115
Score = 79.0 bits (193), Expect = 2e-13
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2773 LMNHLRLTTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 2832
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 2833 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATTNTGSVGKSSVSIEVIN 2887
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2888 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 2945
Query: 72 CR 67
R
Sbjct: 2946 VR 2947
[130][TOP]
>UniRef100_Q9DJS0 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJS0_9CLOS
Length = 371
Score = 79.0 bits (193), Expect = 2e-13
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANIGSVGKSSVSIEVIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[131][TOP]
>UniRef100_Q9DJR1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR1_9CLOS
Length = 371
Score = 79.0 bits (193), Expect = 2e-13
Identities = 55/177 (31%), Positives = 82/177 (46%), Gaps = 13/177 (7%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN V H
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 122
Query: 378 KLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
+ E + +++R P D L K++ ++ T S S+ + IN V
Sbjct: 123 DIDALYEPQHRIYGEVSYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDV 182
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYFCR 67
+++A Y+ +TQAEK L Q HL K + T HE QG+T+ V R
Sbjct: 183 PYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKPVPVVNTVHEVQGETYKKVRLVR 237
[132][TOP]
>UniRef100_Q9DJM2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM2_9CLOS
Length = 370
Score = 79.0 bits (193), Expect = 2e-13
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 62 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 121
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S+ + IN
Sbjct: 122 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGGVGKSSVSIEIIN 176
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 177 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKVRL 234
Query: 72 CR 67
R
Sbjct: 235 VR 236
[133][TOP]
>UniRef100_Q9DJQ8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ8_9CLOS
Length = 371
Score = 78.6 bits (192), Expect = 3e-13
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L ECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVGECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[134][TOP]
>UniRef100_Q9DJP8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP8_9CLOS
Length = 369
Score = 78.6 bits (192), Expect = 3e-13
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 LMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLH 120
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + N
Sbjct: 121 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVTN 175
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG T+ V
Sbjct: 176 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGDTYKKVRL 233
Query: 72 CR 67
R
Sbjct: 234 VR 235
[135][TOP]
>UniRef100_Q0E5F1 Replicase large subunit n=2 Tax=Brugmansia mild mottle virus
RepID=Q0E5F1_9VIRU
Length = 1612
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 6/177 (3%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT---G 367
+ + L DE + H G V +L C FGDT+QIP+++R +F + H T
Sbjct: 898 RVENLFIDEGLMLHPGCVNFLVSLTMCDRAFVFGDTQQIPYINRVQNFPYPKHFATLEVD 957
Query: 366 KVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE---VVPINSPVSVERNTNA 196
+VE + +T R PAD T+ L + + V +S V +S+ +V S + +
Sbjct: 958 EVETRRVTMRCPADVTHFLNERY---SGTVMCSSGVQKSVSSEILVGAGSVNPITKPLKG 1014
Query: 195 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L +G +++ T HE QG+T+++V RLT T +L + P
Sbjct: 1015 KILTFTQSDKFALTE----RGYEDVNTVHEVQGETYEDVSVVRLTPTPLALISRDSP 1067
[136][TOP]
>UniRef100_P30738 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain Korean)
RepID=RDRP_TMVKR
Length = 1616
Score = 78.2 bits (191), Expect = 4e-13
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V T++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVTMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[137][TOP]
>UniRef100_A3RF53 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=A3RF53_9VIRU
Length = 1616
Score = 77.8 bits (190), Expect = 5e-13
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V +++ C +GDT+QIP+++R F + H K+ +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVSMSLCDIAYVYGDTQQIPYINRVSGFPYPAHFSKIEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L K + + V + S V +S+ ++ ++ + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKKSVSQEMVSGAATINPVSKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G + T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSEVHTVHEVQGETYSDVSLVRLTPTPISIIAGDSP 1068
[138][TOP]
>UniRef100_Q9DJL9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL9_9CLOS
Length = 371
Score = 77.4 bits (189), Expect = 7e-13
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 123 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE Q +T+ V
Sbjct: 178 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQEETYKKVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[139][TOP]
>UniRef100_Q91I83 Replication protein n=1 Tax=Tobacco mosaic virus RepID=Q91I83_9VIRU
Length = 1116
Score = 77.0 bits (188), Expect = 9e-13
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE L H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLLLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[140][TOP]
>UniRef100_A8RS49 Polyprotein n=1 Tax=Plum bark necrosis stem pitting-associated virus
RepID=A8RS49_9CLOS
Length = 2343
Score = 76.6 bits (187), Expect = 1e-12
Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Frame = -2
Query: 525 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV---FRHHKLTGKVER 355
++ DEC+L HAG + A +L S+V +GD QIPF+ R FV H+ K
Sbjct: 2116 MLIDECYLPHAGQLQAIFSLYTPSKVSMYGDRHQIPFIPRTEGFVCTRAEHNIDEDKYSE 2175
Query: 354 KLITWRSPADATY---CLEKYFYK-NKRPVKTNSRVLRSIEVVP-INSPVSVERNTNALY 190
L ++R PAD Y C+ K K V T ++VLRS+ +P P + + NA+
Sbjct: 2176 VLKSYRCPADICYWMNCVAKAPEKVYSGLVTTFNKVLRSVVKIPSAVIPSHLIKEANAI- 2234
Query: 189 LCHTQAEKA-----VLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCR 67
L TQA+K V A+ +K ++ T HEAQGKTF+NV R
Sbjct: 2235 LTFTQADKEMAFKFVAGAKLGMKQKIHVSTIHEAQGKTFENVIIYR 2280
[141][TOP]
>UniRef100_A0SEL1 126 kDa replicase n=1 Tax=Maracuja mosaic virus RepID=A0SEL1_9VIRU
Length = 1103
Score = 76.6 bits (187), Expect = 1e-12
Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF--- 388
L++ V+ + DE + H G++ + C + FGDT+QIPF++R +F +
Sbjct: 878 LINRVPVRFDTVWVDEGLMVHTGVIQFSRLRTNCKRMYVFGDTKQIPFINRVMTFDYPEC 937
Query: 387 -RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPI-NSPVSV 214
R K+ +E + +T R PAD T L + + V T S LRS++ + + V
Sbjct: 938 LRSLKV-NSIETRSVTKRCPADVTVYLSSQYESH---VLTTSNTLRSVDAQLLKGAAVLT 993
Query: 213 ERNT--NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 40
R T N + TQA+KA+LK ++ + T HE QG TFD V R T T +
Sbjct: 994 PRETVLNGKIVTFTQADKALLKKNGYI----GVNTVHEVQGDTFDEVSLVRATPTPVGII 1049
Query: 39 TGRDP 25
P
Sbjct: 1050 AKDSP 1054
[142][TOP]
>UniRef100_Q88920 Replicase small subunit n=1 Tax=Turnip vein-clearing virus
RepID=RDRP_TVCV
Length = 1601
Score = 76.6 bits (187), Expect = 1e-12
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM S +RL DE + H G V L+ C +GDT+QIPF+ R +F + H
Sbjct: 883 LMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPFICRVANFPYPAH 942
Query: 378 ---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
+ + E + +T R PAD TY L K K V S V RS++ + ++
Sbjct: 943 FAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVRGKGALNP 999
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
T L L TQA+K L KG ++ T HE QG+T++ RLT T + +
Sbjct: 1000 ITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYEKTAIVRLTSTPLEIIS 1055
Query: 36 GRDP 25
P
Sbjct: 1056 SASP 1059
[143][TOP]
>UniRef100_UPI00001BBB39 polyprotein n=1 Tax=Little cherry virus 2 RepID=UPI00001BBB39
Length = 2150
Score = 76.3 bits (186), Expect = 2e-12
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Frame = -2
Query: 552 SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL 373
S A K + DECFL HAG + A LAG EV +GD++QIPF++R SF ++ +
Sbjct: 1405 SLRAGKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVV 1464
Query: 372 TG---KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPIN 229
KV ++ +++R P+D L + ++KR VK +SR RS+ I+
Sbjct: 1465 KTDKFKVIKRNVSYRCPSDVCVMLSE--KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAIS 1522
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTH---LKGCDNIFTTHEAQGKTFDNVYFCRLTR 58
S V+ +++ TQ EK + + LK N T HE QGKT V RL
Sbjct: 1523 SITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSN--TVHEIQGKTVPFVKIIRLKA 1580
Query: 57 TSTSLTT 37
S+ T
Sbjct: 1581 AEDSVFT 1587
[144][TOP]
>UniRef100_UPI0000161E2A Replicase n=1 Tax=Tobacco mosaic virus RepID=UPI0000161E2A
Length = 1616
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[145][TOP]
>UniRef100_Q9J943 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=Q9J943_9VIRU
Length = 1616
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[146][TOP]
>UniRef100_Q9IBK5 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=Q9IBK5_9VIRU
Length = 1616
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[147][TOP]
>UniRef100_Q9DJT4 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT4_9CLOS
Length = 371
Score = 76.3 bits (186), Expect = 2e-12
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD+EQI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSEQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[148][TOP]
>UniRef100_Q991N2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2
RepID=Q991N2_9CLOS
Length = 1980
Score = 76.3 bits (186), Expect = 2e-12
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG--- 367
K + DECFL HAG + LAG EV +GD++QIPF++R +FV R+ +
Sbjct: 1298 KCDTVCIDECFLVHAGELKICTALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGF 1357
Query: 366 KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSV 214
KV ++ +++R P+D L + K+KR VK +SR RS+ I+S V
Sbjct: 1358 KVIKRNVSYRCPSDVCVMLSE--KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDV 1415
Query: 213 ERNTNALYLCHTQAEKAVLKAQT---HLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ +++ TQ EK + + LK N T HE QGKT V RL S+
Sbjct: 1416 DMENGDVFVTFTQDEKHAVNNEAKARRLKVSTN--TVHEIQGKTVPFVKIVRLKAADDSV 1473
Query: 42 TT 37
T
Sbjct: 1474 FT 1475
[149][TOP]
>UniRef100_Q991N1 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q991N1_9CLOS
Length = 1528
Score = 76.3 bits (186), Expect = 2e-12
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 15/182 (8%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG--- 367
K + DECFL HAG + LAG EV +GD++QIPF++R +FV R+ +
Sbjct: 1298 KCDTVCIDECFLVHAGELKICTALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGF 1357
Query: 366 KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSV 214
KV ++ +++R P+D L + K+KR VK +SR RS+ I+S V
Sbjct: 1358 KVIKRNVSYRCPSDVCVMLSE--KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDV 1415
Query: 213 ERNTNALYLCHTQAEKAVLKAQT---HLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ +++ TQ EK + + LK N T HE QGKT V RL S+
Sbjct: 1416 DMENGDVFVTFTQDEKHAVNNEAKARRLKVSTN--TVHEIQGKTVPFVKIVRLKAADDSV 1473
Query: 42 TT 37
T
Sbjct: 1474 FT 1475
[150][TOP]
>UniRef100_Q91I84 Replication protein n=1 Tax=Tobacco mosaic virus RepID=Q91I84_9VIRU
Length = 1116
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[151][TOP]
>UniRef100_Q91I82 129K replicase protein n=1 Tax=Tobacco mosaic virus
RepID=Q91I82_9VIRU
Length = 1116
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[152][TOP]
>UniRef100_Q88604 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=Q88604_9VIRU
Length = 1601
Score = 76.3 bits (186), Expect = 2e-12
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM S +RL DE + H G V L+ C +GDT+QIPF+ R +F + H
Sbjct: 883 LMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPFICRVANFPYPAH 942
Query: 378 ---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
+ + E + +T R PAD TY L K K V S V RS++ + ++
Sbjct: 943 FAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVRGKGALNP 999
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
T L L TQA+K L KG ++ T HE QG+T++ RLT T + +
Sbjct: 1000 ITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYEKTAIVRLTSTPLEIIS 1055
Query: 36 GRDP 25
P
Sbjct: 1056 RASP 1059
[153][TOP]
>UniRef100_Q7T738 P182 n=1 Tax=Little cherry virus 2 RepID=Q7T738_9CLOS
Length = 1640
Score = 76.3 bits (186), Expect = 2e-12
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Frame = -2
Query: 552 SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL 373
S A K + DECFL HAG + A LAG EV +GD++QIPF++R SF ++ +
Sbjct: 1405 SLRAGKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVV 1464
Query: 372 TG---KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPIN 229
KV ++ +++R P+D L + ++KR VK +SR RS+ I+
Sbjct: 1465 KTDKFKVIKRNVSYRCPSDVCVMLSE--KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAIS 1522
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTH---LKGCDNIFTTHEAQGKTFDNVYFCRLTR 58
S V+ +++ TQ EK + + LK N T HE QGKT V RL
Sbjct: 1523 SITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSN--TVHEIQGKTVPFVKIIRLKA 1580
Query: 57 TSTSLTT 37
S+ T
Sbjct: 1581 AEDSVFT 1587
[154][TOP]
>UniRef100_Q6PY89 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q6PY89_9VIRU
Length = 1612
Score = 76.3 bits (186), Expect = 2e-12
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM +L DE + H G V L+ C E + FGDTEQIPF++R +F + H
Sbjct: 882 LMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYPKH 941
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T E + ++ R PAD T+ + K V S V+RS++ +
Sbjct: 942 FATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTSDVIRSVDAEVVRGKGVFNP 998
Query: 207 NTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ L + TQ++KA LK + + + + T HE QG+TF++V RLT T L
Sbjct: 999 KSKPLKGKIITFTQSDKAELKERGYEEVSTFGEVNTVHEIQGETFEDVSVVRLTPTPLEL 1058
Query: 42 TTGRDP 25
+ P
Sbjct: 1059 ISKSSP 1064
[155][TOP]
>UniRef100_A9EEW7 129K replicase protein n=1 Tax=Tobacco mosaic virus
RepID=A9EEW7_9VIRU
Length = 1116
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[156][TOP]
>UniRef100_A0PA51 Replicase large subunit n=2 Tax=Cucumber mottle virus
RepID=A0PA51_9VIRU
Length = 1672
Score = 76.3 bits (186), Expect = 2e-12
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF---VF 388
+M+ K L DE + H GL+ + +AG +V FGD +QIPF++R +F V
Sbjct: 942 IMNKKPYKFTTLWVDEGLMVHTGLLNFSINIAGVKKVFVFGDRKQIPFINRVMNFDYPVE 1001
Query: 387 RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
+ VER+ +T R P D T L + + V T S V S+ + P +
Sbjct: 1002 LSKLIVDNVERRDVTKRCPVDVTKFLNEVY---PNAVSTTSDVFYSLNAKRVAGPGLLRP 1058
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
A + TQ++K L+ G ++ T HE QG+TFD V R T T L T
Sbjct: 1059 ELTAFKGKIVTFTQSDKFTLEK----AGYTDVNTVHEIQGETFDEVSLVRATATPIGLIT 1114
Query: 36 GRDP 25
+ P
Sbjct: 1115 RKSP 1118
[157][TOP]
>UniRef100_O93058 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain OM)
RepID=RDRP_TMVOM
Length = 1616
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[158][TOP]
>UniRef100_P03586 Replicase small subunit n=1 Tax=Tobacco mosaic virus (vulgare)
RepID=RDRP_TMV
Length = 1616
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[159][TOP]
>UniRef100_Q82718 Methyltransferase n=2 Tax=Indian peanut clump virus
RepID=Q82718_9VIRU
Length = 1130
Score = 75.9 bits (185), Expect = 2e-12
Identities = 58/169 (34%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Frame = -2
Query: 519 FDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI-- 346
FDE + HAG++Y + EVI GD++QIPF++R R+ VER+ +
Sbjct: 911 FDEALMAHAGMIYICGRMLRAREVICQGDSKQIPFINRVEQITLRYASF-NVVEREYVRK 969
Query: 345 TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP----INSPVSVERNTNALYLCHT 178
T+R P D Y L K Y + S+ S++ S V + + YL
Sbjct: 970 TYRCPLDVIYYLNKKRYYQGDDIVGFSKTTHSVDTKSKTSGFTSLVKLPKEP-VHYLTFL 1028
Query: 177 QAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
QAEK V K +KG + T HEAQGKTF+ V RL T L G
Sbjct: 1029 QAEKEEVAKHLAGVKGA-TVSTIHEAQGKTFECVNLVRLKMTDNELYPG 1076
[160][TOP]
>UniRef100_Q84687 Orf1 protein n=2 Tax=Peanut clump virus RepID=Q84687_9VIRU
Length = 1145
Score = 75.9 bits (185), Expect = 2e-12
Identities = 57/169 (33%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Frame = -2
Query: 519 FDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI-- 346
FDE + HAG++Y + EVI GD++QIPF++R ++ VER+ +
Sbjct: 926 FDEALMAHAGMIYICGRMLNAREVICQGDSKQIPFINRVEQISLKYSSF-NVVEREHVRK 984
Query: 345 TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP----INSPVSVERNTNALYLCHT 178
T+R P D Y L K Y + S+ S++ S V + + YL
Sbjct: 985 TYRCPLDIVYYLNKKKYYRGDDIVGYSKTTHSVDTKSKSSGFTSLVKLPKEP-VHYLTFL 1043
Query: 177 QAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 34
QAEK V K +KG + T HEAQGKTF+ V RL T L G
Sbjct: 1044 QAEKEEVSKHLAGVKGA-TVSTVHEAQGKTFERVNLVRLKMTDNELYPG 1091
[161][TOP]
>UniRef100_Q9DJQ1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJQ1_9CLOS
Length = 370
Score = 75.9 bits (185), Expect = 2e-12
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 62 LMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 121
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ S S+ + IN
Sbjct: 122 DIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIIN 176
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V ++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 177 GYDDVPYESDAKYVVYTQAEKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRVRL 234
Query: 72 CR 67
R
Sbjct: 235 VR 236
[162][TOP]
>UniRef100_B8YDL1 p349 protein n=1 Tax=Citrus tristeza virus RepID=B8YDL1_9CLOS
Length = 3113
Score = 75.9 bits (185), Expect = 2e-12
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 LMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 2830
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ S S+ + IN
Sbjct: 2831 DIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIIN 2885
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V ++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 GYDDVPYESDAKYVVYTQAEKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRVRL 2943
Query: 72 CR 67
R
Sbjct: 2944 VR 2945
[163][TOP]
>UniRef100_B8PRP6 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=B8PRP6_9CLOS
Length = 3113
Score = 75.9 bits (185), Expect = 2e-12
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 LMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 2830
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ S S+ + IN
Sbjct: 2831 DIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIIN 2885
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V ++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 GYDDVPYESDAKYVVYTQAEKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRVRL 2943
Query: 72 CR 67
R
Sbjct: 2944 VR 2945
[164][TOP]
>UniRef100_A0ZXL9 Polyprotein (Fragment) n=1 Tax=Fig leaf mottle-associated virus 1
RepID=A0ZXL9_9CLOS
Length = 274
Score = 75.9 bits (185), Expect = 2e-12
Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 15/186 (8%)
Frame = -2
Query: 534 AQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK--- 364
A+ ++ DECFL H GL+ L+G +V +GD +QIPF++R +F + ++ GK
Sbjct: 45 AKVVLIDECFLVHFGLLKVVIALSGAHQVFLYGDRQQIPFINRVQTFKCNNSEIDGKRMQ 104
Query: 363 VERKLITWRSPADATYCLEKYFYKNKR-------PVKTN--SRVLRSIEVVPINSPVSVE 211
+ +K +++R P D C K++R VK +R RSIE+ I S V+
Sbjct: 105 IIKKNVSYRCPGD--ICKRLSEMKDERGNLCYPQGVKKGNPNRPDRSIEMFKITSEADVD 162
Query: 210 RNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRL--TRTSTSLT 40
+ + L TQ EK + + + N + T HEAQGK N RL S ++
Sbjct: 163 VRPDDIVLTFTQDEKKKMAEELRKRRLKNMVKTVHEAQGKEAGNFCLVRLKMAEDSVFVS 222
Query: 39 TGRDPI 22
TG + +
Sbjct: 223 TGHNVV 228
[165][TOP]
>UniRef100_Q98745 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain Rakkyo)
RepID=RDRP_TMVRA
Length = 1616
Score = 75.9 bits (185), Expect = 2e-12
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCDVAYVYGDTQQIPYINRVSGFPYPAHFSKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 190
E + T R PAD T+ L + + + V + S V +S+ ++ + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVVSTSSVKKSVSQEMVSGAAVINPISKPLHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G + T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSEVHTVHEVQGETYSDVSLVRLTPTPISIIAGDSP 1068
[166][TOP]
>UniRef100_Q9YQ08 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain B395A)
RepID=RDRP_TMVB
Length = 1616
Score = 75.9 bits (185), Expect = 2e-12
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV---SVERNTNALY 190
E + T R PAD T+ L + + + V + S V +S+ + + + ++
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPSHGKI 1017
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP 1068
[167][TOP]
>UniRef100_Q911R9 Replicase large subunit n=2 Tax=Tomato mosaic virus
RepID=Q911R9_9VIRU
Length = 1616
Score = 75.5 bits (184), Expect = 3e-12
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 361
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTGFPYPAHFAKLEVDEV 960
Query: 360 ERKLITWRSPADATYCLEKYF------YKNKRPVKTNSRVLRSIEVVPINSPVSVERNTN 199
E + T R PADAT+ L + + +++ + V + + P++ P+ E
Sbjct: 961 ETRRTTLRCPADATHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASINPVSKPLKGE---- 1016
Query: 198 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1017 --ILTFTQSDKEALLS----RGYADVHTVHEVQGETYADVSLVRLTPTPVSIIAGDSP 1068
[168][TOP]
>UniRef100_Q8JTI3 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q8JTI3_9CLOS
Length = 1112
Score = 75.5 bits (184), Expect = 3e-12
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Frame = -2
Query: 552 SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL 373
S A + + DECFL HAG + A LAG EV +GD++QIPF++R SF ++ +
Sbjct: 877 SLRAGRCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVV 936
Query: 372 TG---KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPIN 229
KV ++ +++R P+D L + ++KR VK +SR RS+ I+
Sbjct: 937 KTDKFKVIKRNVSYRCPSDVCVMLSE--KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAIS 994
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQT---HLKGCDNIFTTHEAQGKTFDNVYFCRLTR 58
S V+ +++ TQ EK ++ + LK N T HE QGKT V RL
Sbjct: 995 SVTDVDMENGDVFVTFTQDEKHMVSNEAKARKLKVSSN--TVHEIQGKTVPFVKIVRLKA 1052
Query: 57 TSTSLTT 37
S+ T
Sbjct: 1053 AEDSVFT 1059
[169][TOP]
>UniRef100_Q85077 Alpha-A protein; N-terminal region (Fragment) n=1 Tax=Poa
semilatent virus RepID=Q85077_9VIRU
Length = 478
Score = 75.5 bits (184), Expect = 3e-12
Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK-- 364
K Q+ FDE H G + A G +E+I GD Q+P + R + +
Sbjct: 245 KCQKFHFDEALKVHYGAILFCADRLGATEIIAQGDRAQLPMICRVEGIDLHYTRPDFSRI 304
Query: 363 -VERKLITWRSPADATYCLEKYFYKN--KRPVKTNSRVLRSI----EVVP--INSPVSVE 211
+ KL+++R P D + L Y N + + T ++V RS+ E P S + V
Sbjct: 305 VISPKLLSYRIPGDVAFYLSARGYYNGVAQTITTKNKVERSMFARGETTPERFISLLDVP 364
Query: 210 RNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ YLC QAEK L A KG ++I T HE+QG TFD+V RL RT +
Sbjct: 365 VRRDVQYLCFMQAEKESLIAYLVPKGVKKESIATIHESQGGTFDHVILVRLQRTPQEIYP 424
Query: 36 G 34
G
Sbjct: 425 G 425
[170][TOP]
>UniRef100_Q3YFN1 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q3YFN1_9VIRU
Length = 1617
Score = 75.5 bits (184), Expect = 3e-12
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM +L DE + H G V L+ C E + FGDTEQIPF++R +F + H
Sbjct: 882 LMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYPKH 941
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 942 FATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVRGKGVFNP 998
Query: 207 NTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ L + TQ++KA LK + + + I T HE QG+TF++V RLT T L
Sbjct: 999 KSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLEL 1058
Query: 42 TTGRDP 25
+ P
Sbjct: 1059 ISKSSP 1064
[171][TOP]
>UniRef100_C0L2T4 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2T4_9VIRU
Length = 1648
Score = 75.5 bits (184), Expect = 3e-12
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD EQIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAEQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[172][TOP]
>UniRef100_P89659 Replicase small subunit n=3 Tax=Odontoglossum ringspot virus
RepID=RDRP_ORSVC
Length = 1612
Score = 75.5 bits (184), Expect = 3e-12
Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 8/186 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM +L DE + H G V L+ C E + FGDTEQIPF++R +F + H
Sbjct: 882 LMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYPKH 941
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 942 FATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVRGKGVFNP 998
Query: 207 NTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ L + TQ++KA LK + + + I T HE QG+TF++V RLT T L
Sbjct: 999 KSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLEL 1058
Query: 42 TTGRDP 25
+ P
Sbjct: 1059 ISKSSP 1064
[173][TOP]
>UniRef100_Q8BEP9 Methyltransferase/helicase polyprotein n=3 Tax=Grapevine rootstock
stem lesion associated virus RepID=Q8BEP9_9CLOS
Length = 2931
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN +
Sbjct: 2618 LMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNELDKCLYG 2677
Query: 378 KLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
L V+ + +++R P D L + VK S S+ + INS +
Sbjct: 2678 DLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINEINSVDDL 2737
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 64
+ + YLC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 2738 VPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARVNLVRL 2789
[174][TOP]
>UniRef100_UPI0000164AC8 401-kDa viral polyprotein n=2 Tax=Citrus tristeza virus
RepID=UPI0000164AC8
Length = 3582
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2782 LMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSFVA 2841
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 2842 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 2896
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2897 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRVRL 2954
Query: 72 CR 67
R
Sbjct: 2955 VR 2956
[175][TOP]
>UniRef100_Q9DJU2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJU2_9CLOS
Length = 371
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[176][TOP]
>UniRef100_Q9DJT5 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT5_9CLOS
Length = 371
Score = 75.1 bits (183), Expect = 3e-12
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ V IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSVEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[177][TOP]
>UniRef100_Q9DJS5 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJS5_9CLOS
Length = 371
Score = 75.1 bits (183), Expect = 3e-12
Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
SF+ H++ G+V ++R P D L K + ++ S S+ + IN
Sbjct: 123 DIDSFIQPEHRVYGEV-----SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GYEDVPYEGDAKYIVYTQAEKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[178][TOP]
>UniRef100_Q9DJR5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR5_9CLOS
Length = 371
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[179][TOP]
>UniRef100_Q9DJR4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR4_9CLOS
Length = 371
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[180][TOP]
>UniRef100_Q9DJR3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR3_9CLOS
Length = 371
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICKWLSEFYPRHVATANVGSVGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[181][TOP]
>UniRef100_Q9DJL4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL4_9CLOS
Length = 371
Score = 75.1 bits (183), Expect = 3e-12
Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
SF+ H++ G+V ++R P D L K + ++ S S+ + IN
Sbjct: 123 DIDSFIQPEHRVYGEV-----SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GYEDVPYEGDAKYIVYTQAEKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[182][TOP]
>UniRef100_Q8UYT4 1a protein n=1 Tax=Tomato aspermy virus RepID=Q8UYT4_TAV
Length = 993
Score = 75.1 bits (183), Expect = 3e-12
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKV 361
+ QR++ DE L H G + A + I FGD+EQI F SR+ SF RH + +
Sbjct: 776 EVQRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDET 835
Query: 360 ERKLITWRSPAD--------ATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 205
+ T+RSP D A+ L+K + + S+V RS+ + S V+
Sbjct: 836 DTADTTFRSPQDVIKVVKCMASKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLT 895
Query: 204 TNALYLCHTQAEKAVLKAQTHLKGCDNIF------TTHEAQGKTFDNVYFCRLTRTSTSL 43
+ Y+ TQA+K L+ + N F TTHE+QG + D+V RL T L
Sbjct: 896 EDRFYITMTQADKTALRTRARELNMSNDFIEHRIKTTHESQGVSEDHVTLVRLKTTKCDL 955
[183][TOP]
>UniRef100_Q8B3T9 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=Q8B3T9_9CLOS
Length = 3122
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2780 LMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 2839
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 2840 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 2894
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2895 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRVRL 2952
Query: 72 CR 67
R
Sbjct: 2953 VR 2954
[184][TOP]
>UniRef100_Q66237 349-kDa viral polyprotein n=1 Tax=Citrus tristeza virus
RepID=Q66237_9CLOS
Length = 3124
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2782 LMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSFVA 2841
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 2842 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 2896
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2897 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRVRL 2954
Query: 72 CR 67
R
Sbjct: 2955 VR 2956
[185][TOP]
>UniRef100_Q65715 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65715_BSMV
Length = 1138
Score = 75.1 bits (183), Expect = 3e-12
Identities = 64/185 (34%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK 364
+A R FDE H G + A G SE++ GD Q+P + R F+ T
Sbjct: 904 QADRFHFDEALKVHYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKT 963
Query: 363 -VERKLITWRSPAD-ATYCLEKYFYKNK---RPVKTNSRVLRSIEVVPINSP-------- 223
+ KL ++R P D A Y K FYK K + V T++ V RS+ +P
Sbjct: 964 IINPKLRSYRIPGDVAFYLSAKEFYKVKGIPQKVTTSNSVKRSLYARGETTPERFVSLLD 1023
Query: 222 VSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNVYFCRLTRTST 49
V V +NT+ YL QAEK L + KG ++I T HEAQG T++NV RL RT
Sbjct: 1024 VPVRKNTH--YLTFLQAEKESLMSHLIPKGVKKESISTIHEAQGGTYENVILVRLQRTPN 1081
Query: 48 SLTTG 34
+ G
Sbjct: 1082 EIYPG 1086
[186][TOP]
>UniRef100_Q50L56 1a protein n=1 Tax=Cassia yellow blotch virus RepID=Q50L56_9BROM
Length = 955
Score = 75.1 bits (183), Expect = 3e-12
Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVER 355
QRL+ DE L H G V A A + +EV+ FGD+EQI F SR+ +F FRH K+ + +
Sbjct: 742 QRLLIDEAGLLHFGQVLAVAAICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDV 801
Query: 354 KLITWRSPADATYCLEKYFYKNKRPVK-------TNSRVLRSIEVVPINSPVSVERNTNA 196
+T+R P D + K + + + + S+V +S+ PI+S + +
Sbjct: 802 VTVTYRCPQDVVAAVVKMKRRTGKLRESKYSSWISRSKVEKSLSARPISSLNQIVIEPHK 861
Query: 195 LYLCHTQAEKAVLKAQTHLKGCD--------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
Y TQ+ KA L T K NI T HE+QG + D+V R T L
Sbjct: 862 FYQTMTQSAKAAL--MTRAKDFQLPKSWIEANIKTAHESQGISVDHVVHVRDKSTKCDL 918
[187][TOP]
>UniRef100_D0EAN1 348 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAN1_9CLOS
Length = 3113
Score = 75.1 bits (183), Expect = 3e-12
Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 2830
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
SF+ H++ G+V ++R P D L K + ++ S S+ + IN
Sbjct: 2831 DIDSFIQPEHRVYGEV-----SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIIN 2885
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 GYEDVPYEGDAKYIVYTQAEKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRVRL 2943
Query: 72 CR 67
R
Sbjct: 2944 VR 2945
[188][TOP]
>UniRef100_C9EFC7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C9EFC7_9VIRU
Length = 1648
Score = 75.1 bits (183), Expect = 3e-12
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ IT R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[189][TOP]
>UniRef100_C9EFC3 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C9EFC3_9VIRU
Length = 1648
Score = 75.1 bits (183), Expect = 3e-12
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ IT R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[190][TOP]
>UniRef100_C3V8Q5 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C3V8Q5_9VIRU
Length = 1648
Score = 75.1 bits (183), Expect = 3e-12
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ IT R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[191][TOP]
>UniRef100_B5THC9 p1a n=1 Tax=Citrus tristeza virus RepID=B5THC9_9CLOS
Length = 3122
Score = 75.1 bits (183), Expect = 3e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2780 LMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 2839
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 2840 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 2894
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2895 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRVRL 2952
Query: 72 CR 67
R
Sbjct: 2953 VR 2954
[192][TOP]
>UniRef100_P28931 Methyltransferase n=1 Tax=Tomato aspermy virus RepID=ORF1A_TAV
Length = 993
Score = 75.1 bits (183), Expect = 3e-12
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKV 361
+ QR++ DE L H G + A + I FGD+EQI F SR+ SF RH + +
Sbjct: 776 EVQRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDET 835
Query: 360 ERKLITWRSPAD--------ATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 205
+ T+RSP D A+ L+K + + S+V RS+ + S V+
Sbjct: 836 DTADTTFRSPQDVIKVVKCMASKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLT 895
Query: 204 TNALYLCHTQAEKAVLKAQTHLKGCDNIF------TTHEAQGKTFDNVYFCRLTRTSTSL 43
+ Y+ TQA+K L+ + N F TTHE+QG + D+V RL T L
Sbjct: 896 EDRFYITMTQADKTALRTRARELNMSNDFIEHRIKTTHESQGVSEDHVTLVRLKTTKCDL 955
[193][TOP]
>UniRef100_Q9DJT7 Putative uncharacterized protein (Fragment) n=2 Tax=Citrus tristeza
virus RepID=Q9DJT7_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[194][TOP]
>UniRef100_Q9DJT6 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT6_9CLOS
Length = 301
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[195][TOP]
>UniRef100_Q9DJT2 Putative uncharacterized protein (Fragment) n=4 Tax=Citrus tristeza
virus RepID=Q9DJT2_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[196][TOP]
>UniRef100_Q9DJT1 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT1_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[197][TOP]
>UniRef100_Q9DJT0 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT0_9CLOS
Length = 366
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 58 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 117
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 118 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 172
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 173 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 230
Query: 72 CR 67
R
Sbjct: 231 VR 232
[198][TOP]
>UniRef100_Q9DJS7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS7_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[199][TOP]
>UniRef100_Q9DJS1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS1_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ + S S+ + IN
Sbjct: 123 DIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPXHVATANIASVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V ++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GYDDVPYESDAKYVVYTQAEKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[200][TOP]
>UniRef100_Q9DJR8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR8_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 63 LMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V ++A Y+ +TQAEK + Q HL K + T HE QG+T+ V
Sbjct: 178 GYDDVPYESDAKYVVYTQAEKN--EFQKHLGRLTVGRTKTVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[201][TOP]
>UniRef100_Q9DJR7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR7_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[202][TOP]
>UniRef100_Q9DJQ9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ9_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[203][TOP]
>UniRef100_Q9DJN9 Polyprotein (Fragment) n=9 Tax=Citrus tristeza virus
RepID=Q9DJN9_9CLOS
Length = 371
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[204][TOP]
>UniRef100_Q49IH3 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2
RepID=Q49IH3_9CLOS
Length = 2936
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN +
Sbjct: 2623 LMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNDLDKCLYG 2682
Query: 378 KLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
L V+ + +++R P D L + VK S S+ + INS +
Sbjct: 2683 DLDRFVDLQCRVYGNVSYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVDDL 2742
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 64
+ + YLC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 2743 VPDMGSTYLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARVNLVRL 2794
[205][TOP]
>UniRef100_Q2V8A8 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=Q2V8A8_9CLOS
Length = 1317
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN +
Sbjct: 1004 LMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNELDKCLYG 1063
Query: 378 KLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
L V+ + +++R P D L + VK S S+ + INS +
Sbjct: 1064 DLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDL 1123
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 64
+ + YLC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 1124 VPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRL 1175
[206][TOP]
>UniRef100_C8CJL7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C8CJL7_9VIRU
Length = 1648
Score = 74.7 bits (182), Expect = 4e-12
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC FGD +QIPF++R +F +
Sbjct: 920 VMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ IT R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[207][TOP]
>UniRef100_B9VB56 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB56_9CLOS
Length = 3122
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2780 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 2839
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 2840 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVSIEEIN 2894
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2895 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 2952
Query: 72 CR 67
R
Sbjct: 2953 VR 2954
[208][TOP]
>UniRef100_B9VB08 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB08_9CLOS
Length = 3116
Score = 74.7 bits (182), Expect = 4e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2774 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 2833
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 2834 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 2888
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2889 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 2946
Query: 72 CR 67
R
Sbjct: 2947 VR 2948
[209][TOP]
>UniRef100_Q84133 Replicase small subunit n=2 Tax=Odontoglossum ringspot virus
RepID=RDRP_ORSVS
Length = 1612
Score = 74.7 bits (182), Expect = 4e-12
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 8/186 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF-RH 382
LM +L DE + H G V L+ C E + FGD EQIPF++R +F + +H
Sbjct: 882 LMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFINRVANFPYPKH 941
Query: 381 HKLTGKVERKL--ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
+ T R++ ++ R PAD T+ + K V + V+RS++ +
Sbjct: 942 FRYTCLYHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVRGKGVFNP 998
Query: 207 NTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ L + TQ++KA LK + + + I T HE QG+TF++V RLT T L
Sbjct: 999 KSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLEL 1058
Query: 42 TTGRDP 25
+ P
Sbjct: 1059 ISKSSP 1064
[210][TOP]
>UniRef100_Q9DJR9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR9_9CLOS
Length = 371
Score = 74.3 bits (181), Expect = 6e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 63 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 122
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 123 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVXSVGKSSVSIEEIN 177
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 178 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 235
Query: 72 CR 67
R
Sbjct: 236 VR 237
[211][TOP]
>UniRef100_C7B977 ORF 1a/1b fusion protein n=2 Tax=Tomato infectious chlorosis virus
RepID=C7B977_9CLOS
Length = 2394
Score = 74.3 bits (181), Expect = 6e-12
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Frame = -2
Query: 546 SAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG 367
+ ++ + FDE ++ H+G A + + +GD Q+P+++RNP +V +H +
Sbjct: 1654 NVIELDKAYFDEAYMIHSGQFLVCAAKLKYNNLYCYGDVNQLPYINRNP-YVTDYHSFSI 1712
Query: 366 KVERKL----ITWRSPADATYCLE-------KYFY----KNKRPVKTNSRVLRSIEVVPI 232
+ +L T+R PAD Y L K Y KN P S+V+RS EV +
Sbjct: 1713 FEDVELNHDDKTFRCPADVCYLLSNLKNDAGKPLYPRGVKNSNP---GSKVIRSCEVEGV 1769
Query: 231 NSPVSVERNTNALYLCHTQAEKAVLKAQTHLK---GCDN-IFTTHEAQGKTFDNVYFCRL 64
N +E + YL TQ EK ++ Q H+ GC++ + T HEAQG TF +V RL
Sbjct: 1770 NGVNQIEIQKDVKYLTFTQDEK--IELQHHIARSGGCEHEVNTVHEAQGCTFPSVALVRL 1827
[212][TOP]
>UniRef100_B9VB20 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB20_9CLOS
Length = 3116
Score = 74.3 bits (181), Expect = 6e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2774 LMNHLQLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDFGVSLLH 2833
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 2834 DIDAFIQPEHRIYGEV-----SYRCPWDICERLSEFYPRHVATANVGSVGKSSVSIEEIN 2888
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2889 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 2946
Query: 72 CR 67
R
Sbjct: 2947 VR 2948
[213][TOP]
>UniRef100_B2LS13 Replicase large subunit n=2 Tax=Chinese Rape Mosaic Virus
RepID=B2LS13_YOMV
Length = 1596
Score = 74.3 bits (181), Expect = 6e-12
Identities = 56/175 (32%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 361
+RL DE + H G V L+ C +GDT+QIPF+ R +F + H + +
Sbjct: 887 KRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVANFPYPSHFAKLVVDEK 946
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 190
E + IT R PAD TY L + K V S V RS+ + ++ T L
Sbjct: 947 EDRRITLRCPADVTYFLNQ---KYDGAVMCTSSVERSVSAEVVRGKGALNPITLPLEGKI 1003
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQA+K L KG ++ T HE QG+T++ RLT T + + P
Sbjct: 1004 LTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRASP 1054
[214][TOP]
>UniRef100_Q9IR66 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q9IR66_9VIRU
Length = 1648
Score = 73.9 bits (180), Expect = 7e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[215][TOP]
>UniRef100_Q9DJP4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP4_9CLOS
Length = 366
Score = 73.9 bits (180), Expect = 7e-12
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L+ DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 58 LMNHLRLTTQLLLVDECFMVHAGAIGAVXEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 117
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H+ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 118 DIDAFIQPEHRTYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEIN 172
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 173 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 230
Query: 72 CR 67
R
Sbjct: 231 VR 232
[216][TOP]
>UniRef100_Q8QTJ1 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q8QTJ1_9VIRU
Length = 1648
Score = 73.9 bits (180), Expect = 7e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[217][TOP]
>UniRef100_Q8QTI9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q8QTI9_9VIRU
Length = 1648
Score = 73.9 bits (180), Expect = 7e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[218][TOP]
>UniRef100_Q806Y9 Methyltransferase and helicase polyprotein n=1 Tax=Cucumber yellows
virus RepID=Q806Y9_9CLOS
Length = 1887
Score = 73.9 bits (180), Expect = 7e-12
Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRH- 382
LM V L DE F+ H G +A L C + FGD QIP+++R P+ V H
Sbjct: 1648 LMKGKEVTITNLYCDEIFMVHCGEWFACLNLIKCQSIECFGDKNQIPYINRVPNTVCHHS 1707
Query: 381 --HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPV--------KTNSRVLRSIEVVPI 232
+T +E I++R P D Y L P+ +N LRS+ V P+
Sbjct: 1708 YSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNPLYPGGVYSAGSNCDNLRSLSVEPM 1767
Query: 231 NSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGCDNIFTTHEAQGKTFDNVYFCR 67
NSP ++ ++ TQ EK + LK + T +E QG TF V R
Sbjct: 1768 NSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDSKSANTVNEVQGGTFPTVMLFR 1824
[219][TOP]
>UniRef100_O71209 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=O71209_9CLOS
Length = 2473
Score = 73.9 bits (180), Expect = 7e-12
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN +
Sbjct: 2160 LMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNELDKCLYG 2219
Query: 378 KLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
L V+ + I++R P D L + VK S S+ + INS +
Sbjct: 2220 DLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVDDL 2279
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 64
+ + +LC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 2280 VPDVGSTFLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARVNLVRL 2331
[220][TOP]
>UniRef100_C0L2T0 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2T0_9VIRU
Length = 1648
Score = 73.9 bits (180), Expect = 7e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[221][TOP]
>UniRef100_C0L2S6 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2S6_9VIRU
Length = 1648
Score = 73.9 bits (180), Expect = 7e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[222][TOP]
>UniRef100_B7U5T5 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2
RepID=B7U5T5_9CLOS
Length = 2936
Score = 73.9 bits (180), Expect = 7e-12
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 7/172 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN +
Sbjct: 2623 LMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNELDKCLYG 2682
Query: 378 KLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
L V+ + I++R P D L + VK S S+ + INS +
Sbjct: 2683 DLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVDDL 2742
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 64
+ + +LC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 2743 VPDVGSTFLCMLQSEKLEISKHFIRKGLPKLNVLTVHEAQGETYARVNLVRL 2794
[223][TOP]
>UniRef100_B0FWD9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=B0FWD9_9VIRU
Length = 1648
Score = 73.9 bits (180), Expect = 7e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[224][TOP]
>UniRef100_A7KY79 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=A7KY79_9VIRU
Length = 1648
Score = 73.9 bits (180), Expect = 7e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[225][TOP]
>UniRef100_A0PA59 Replicase large subunit n=2 Tax=Youcai mosaic virus
RepID=A0PA59_9VIRU
Length = 1596
Score = 73.9 bits (180), Expect = 7e-12
Identities = 57/184 (30%), Positives = 83/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM + +RL DE + H G V L+ C +GDT+QIPF+ R +F + H
Sbjct: 879 LMHPPKREFKRLFIDEGLMLHTGCVNFLTLLSHCEVAYVYGDTQQIPFICRVANFPYPKH 938
Query: 378 ---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
+ + E + +T R PAD T+ L K K V S V RS+ + ++
Sbjct: 939 FAKLVVDEKEDRRVTLRCPADVTFFLNK---KYDGAVLCTSSVERSVSAEVVRGKGALNP 995
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
T L L TQA+K L KG ++ T HE QG+T++ RLT T + +
Sbjct: 996 ITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEIIS 1051
Query: 36 GRDP 25
P
Sbjct: 1052 RASP 1055
[226][TOP]
>UniRef100_P69514 Replicase small subunit n=1 Tax=Cucumber green mottle mosaic virus
(watermelon strain SH) RepID=RDRP_CGMVS
Length = 1648
Score = 73.9 bits (180), Expect = 7e-12
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[227][TOP]
>UniRef100_Q9DJS4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS4_9CLOS
Length = 366
Score = 73.6 bits (179), Expect = 1e-11
Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 18/178 (10%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 60 LMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLH 119
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
SF+ H++ G+V ++R P D + K + ++ S S+ + IN
Sbjct: 120 DIDSFIQPEHRVYGEV-----SYRCPWDICEWMSKSYPRHVATANIASVGKSSVSIEIIN 174
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 79
V +A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 175 GYEDVPYEGDAKYIVYTQAEKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 230
[228][TOP]
>UniRef100_Q65716 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65716_BSMV
Length = 1138
Score = 73.6 bits (179), Expect = 1e-11
Identities = 64/185 (34%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK 364
+A R FDE H G + A G SE++ GD Q+P + R F+ T
Sbjct: 904 QADRFHFDEALKVHYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKT 963
Query: 363 -VERKLITWRSPAD-ATYCLEKYFYKNK---RPVKTNSRVLRSIEVVPINSP-------- 223
+ KL ++R P D A Y K FYK K + V T + V RS+ +P
Sbjct: 964 IINPKLRSYRIPGDVAFYLSAKEFYKVKGIPQKVTTFNSVKRSLYARGETTPERFVSLLD 1023
Query: 222 VSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNVYFCRLTRTST 49
V V +NT+ YL QAEK L + KG ++I T HEAQG T++NV RL RT
Sbjct: 1024 VPVRKNTH--YLTFLQAEKESLMSHLIPKGVKKESISTIHEAQGGTYENVILVRLQRTPN 1081
Query: 48 SLTTG 34
+ G
Sbjct: 1082 EIYPG 1086
[229][TOP]
>UniRef100_Q14V59 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q14V59_9VIRU
Length = 1648
Score = 73.6 bits (179), Expect = 1e-11
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 920 VMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFIFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[230][TOP]
>UniRef100_P87587 P346 n=1 Tax=Citrus tristeza virus RepID=P87587_9CLOS
Length = 3107
Score = 73.6 bits (179), Expect = 1e-11
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ +K L D CF+ HAG + A V+ FGD+ QI ++ RN
Sbjct: 2765 LMNHIRLKTDLLFVDVCFMVHAGAIGAVVEFTSRKAVVFFGDSRQIHYIHRNDFGVSLLH 2824
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L K++ ++ T S S+ + IN
Sbjct: 2825 DIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGRSSVSIEIIN 2879
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2880 GCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVAGTKAVPIVNTVHEVQGETYKKVRL 2937
Query: 72 CR 67
R
Sbjct: 2938 VR 2939
[231][TOP]
>UniRef100_C7EN47 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C7EN47_9VIRU
Length = 1648
Score = 73.6 bits (179), Expect = 1e-11
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 6/184 (3%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
+M+ K + DE + H GL+ A ++GC FGD +QIPF++R +F +
Sbjct: 920 VMNRKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFIFGDAKQIPFINRVMNFDYPKE 979
Query: 378 KLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 980 LRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGILRP 1036
Query: 207 NTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 37
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1037 ELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGLIA 1092
Query: 36 GRDP 25
P
Sbjct: 1093 RDSP 1096
[232][TOP]
>UniRef100_B9VB44 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB44_9CLOS
Length = 3121
Score = 73.6 bits (179), Expect = 1e-11
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2779 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 2838
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H + G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 2839 DIDAFIQPEHHIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVSIEEIN 2893
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2894 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 2951
Query: 72 CR 67
R
Sbjct: 2952 VR 2953
[233][TOP]
>UniRef100_Q9DJP9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP9_9CLOS
Length = 357
Score = 73.2 bits (178), Expect = 1e-11
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 16/180 (8%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 52 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 111
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 112 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEIN 166
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQ------THLKGCDNIFTTHEAQGKTFDNVYFCR 67
V + A Y+ +TQAEK L+ K + T HE QG+T+ V R
Sbjct: 167 GCDDVPYDKAAKYIVYTQAEKNDLQKHHGRLTVGRTKVVPIVNTVHEVQGETYKRVRLVR 226
[234][TOP]
>UniRef100_Q84125 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q84125_9VIRU
Length = 1596
Score = 73.2 bits (178), Expect = 1e-11
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 8/186 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF-RH 382
LM +L DE + H G V L+ C E + FGDTEQIPF++R +F + +H
Sbjct: 882 LMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYPKH 941
Query: 381 --HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
H + E + ++ R PAD T+ + + + + + TN V+RS++ +
Sbjct: 942 FGHTCLHRREVRRLSLRCPADVTHFMNSKY--DGKFLCTND-VIRSVDAEVVRGKGVFNP 998
Query: 207 NTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ L + TQ++KA L + + I T HE QG+TF++V RLT T+ L
Sbjct: 999 KSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTALEL 1058
Query: 42 TTGRDP 25
+ P
Sbjct: 1059 ISKSSP 1064
[235][TOP]
>UniRef100_D0EAL9 349 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAL9_9CLOS
Length = 3116
Score = 73.2 bits (178), Expect = 1e-11
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 13/177 (7%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN V H
Sbjct: 2774 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 2833
Query: 378 KLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
+ ++ + +++R P D L +++ ++ S S+ + IN V
Sbjct: 2834 DIDAFIQPEHCIYGEVSYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDV 2893
Query: 213 ERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYFCR 67
+ A Y+ +TQAEK L Q HL K + T HE QG+T+ V R
Sbjct: 2894 PYDKAAKYIVYTQAEKNDL--QKHLSRLTVGRTKVVPIVNTVHEVQGETYKRVRLVR 2948
[236][TOP]
>UniRef100_C0MNB2 1a protein n=1 Tax=Gayfeather mild mottle virus RepID=C0MNB2_9BROM
Length = 988
Score = 73.2 bits (178), Expect = 1e-11
Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 15/182 (8%)
Frame = -2
Query: 543 AVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTG 367
A R++ DE L H G + A I FGD+EQI F SR+ SF R+ K L
Sbjct: 769 ASDVSRVLIDEVVLLHFGQLCAVMAKLKAVRAICFGDSEQIAFNSRDASFDMRNSKLLPD 828
Query: 366 KVERKLITWRSPAD--------ATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVE 211
+V T+RSP D AT L K + + S+V RS+ + S V+
Sbjct: 829 EVSSADTTFRSPQDVVPIVKLMATKALPKGTHTKYTRWVSQSKVQRSVSTRSVASVTMVD 888
Query: 210 RNTNALYLCHTQAEKAVLKAQTHLKGC------DNIFTTHEAQGKTFDNVYFCRLTRTST 49
+ + Y+ TQA+KA L ++ +NI TTHE+QG + D+V RL T
Sbjct: 889 LSEDRFYITMTQADKAALISRAKELNMSKRFVENNIKTTHESQGISEDHVTLVRLKTTKC 948
Query: 48 SL 43
L
Sbjct: 949 DL 950
[237][TOP]
>UniRef100_Q8V9A6 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q8V9A6_9VIRU
Length = 1597
Score = 72.8 bits (177), Expect = 2e-11
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 361
+RL DE + H G V ++ C +GDT+QIPF+ R +F + H + +
Sbjct: 888 KRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVANFPYPKHFARLVVDEK 947
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 190
E + IT R PAD T+ L K K V S V RS+ + ++ T L
Sbjct: 948 EDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVRGKGALNPITLPLEGKI 1004
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQA+K L KG ++ T HE QG+T++ RLT T + + P
Sbjct: 1005 LTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRASP 1055
[238][TOP]
>UniRef100_Q8V9A2 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q8V9A2_9VIRU
Length = 1597
Score = 72.8 bits (177), Expect = 2e-11
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 361
+RL DE + H G V ++ C +GDT+QIPF+ R +F + H + +
Sbjct: 888 KRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVANFPYPKHFARLVVDEK 947
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 190
E + IT R PAD T+ L K K V S V RS+ + ++ T L
Sbjct: 948 EDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVRGKGALNPITLPLEGKI 1004
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQA+K L KG ++ T HE QG+T++ RLT T + + P
Sbjct: 1005 LTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRASP 1055
[239][TOP]
>UniRef100_Q2XP16 P353 n=1 Tax=Citrus tristeza virus RepID=Q2XP16_9CLOS
Length = 3124
Score = 72.8 bits (177), Expect = 2e-11
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2782 LMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSFVA 2841
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L ++ ++ S S+ + IN
Sbjct: 2842 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFNPRHVATANVGSIGKSSVSIEEIN 2896
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2897 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRVRL 2954
Query: 72 CR 67
R
Sbjct: 2955 VR 2956
[240][TOP]
>UniRef100_Q9DJS3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS3_9CLOS
Length = 370
Score = 72.4 bits (176), Expect = 2e-11
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DE F+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 62 LMNHLRLTTQLLFVDEYFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 121
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D L +++ ++ S S+ + IN
Sbjct: 122 DIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEIN 176
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V N A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 177 GCDDVPYNKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 234
Query: 72 CR 67
R
Sbjct: 235 VR 236
[241][TOP]
>UniRef100_Q91PA8 Replicase large subunit n=2 Tax=Ribgrass mosaic virus
RepID=Q91PA8_RMV
Length = 1597
Score = 72.4 bits (176), Expect = 2e-11
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 361
+RL DE + H G V L+ C +GDT+QIPF+ R +F + H + +
Sbjct: 888 KRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVANFPYPSHFAKLVVDEK 947
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 190
E + +T R PAD TY L + V S V RS+ + ++ T L
Sbjct: 948 EDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVRGKGALNPITLPLEGKI 1004
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQA+K L KG ++ T HE QG+T++ RLT T + + P
Sbjct: 1005 LTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRASP 1055
[242][TOP]
>UniRef100_Q7TD02 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q7TD02_9VIRU
Length = 1597
Score = 72.4 bits (176), Expect = 2e-11
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 6/175 (3%)
Frame = -2
Query: 531 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 361
+RL DE + H G V L+ C +GDT+QIPF+ R +F + H + +
Sbjct: 888 KRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVANFPYPSHFAKLVVDEK 947
Query: 360 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 190
E + +T R PAD TY L + V S V RS+ + ++ T L
Sbjct: 948 EDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVRGKGALNPITLPLEGKI 1004
Query: 189 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 25
L TQA+K L KG ++ T HE QG+T++ RLT T + + P
Sbjct: 1005 LTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEIISRASP 1055
[243][TOP]
>UniRef100_Q65714 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65714_BSMV
Length = 1139
Score = 72.4 bits (176), Expect = 2e-11
Identities = 63/185 (34%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK 364
+A R FDE H G + A G SE++ GD Q+P + R F+ T
Sbjct: 905 QADRFHFDEALKVHYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKT 964
Query: 363 -VERKLITWRSPAD-ATYCLEKYFYKNK---RPVKTNSRVLRSIEVVPINSP-------- 223
+ KL ++R P D A Y K FYK K + V T++ V RS+ +P
Sbjct: 965 IINPKLRSYRIPGDVAFYLSAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLD 1024
Query: 222 VSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNVYFCRLTRTST 49
V V ++T+ YL QAEK L + KG ++I T HEAQG T++NV RL RT
Sbjct: 1025 VPVRKDTH--YLTFLQAEKESLMSHLIPKGVKKESISTIHEAQGGTYENVILVRLQRTPN 1082
Query: 48 SLTTG 34
+ G
Sbjct: 1083 EIYPG 1087
[244][TOP]
>UniRef100_Q65713 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65713_BSMV
Length = 1138
Score = 72.4 bits (176), Expect = 2e-11
Identities = 62/185 (33%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK-- 364
+A RL FDE H G + A G SE++ GD Q+P + R +
Sbjct: 904 QADRLHFDEALKVHYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYSKT 963
Query: 363 -VERKLITWRSPAD-ATYCLEKYFYKNK---RPVKTNSRVLRSIEVVPINSP-------- 223
+ KL ++R P D A Y K FYK K + V T + V RS+ +P
Sbjct: 964 IINPKLRSYRIPGDVAFYLSAKEFYKVKGIPQKVTTFNSVKRSMYARGETTPDRFVSLLD 1023
Query: 222 VSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNVYFCRLTRTST 49
V V ++T+ YL QAEK L + KG ++I T HEAQG T++NV RL RT
Sbjct: 1024 VPVRKDTH--YLTFLQAEKESLMSHLIPKGVKKESISTIHEAQGGTYENVILVRLQRTPN 1081
Query: 48 SLTTG 34
+ G
Sbjct: 1082 EIYPG 1086
[245][TOP]
>UniRef100_Q5I5A7 1a protein (Fragment) n=1 Tax=Beet pseudo-yellows virus
RepID=Q5I5A7_9CLOS
Length = 456
Score = 72.4 bits (176), Expect = 2e-11
Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRH- 382
LM L DE F+ H G +A L C + FGD QIP+++R P+ V H
Sbjct: 262 LMKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQSIECFGDKNQIPYINRVPNTVCHHS 321
Query: 381 --HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPV--------KTNSRVLRSIEVVPI 232
+T +E I++R P D Y L P+ +N LRS+ V P+
Sbjct: 322 YSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNPLYPGGVYSAGSNCDNLRSLSVEPM 381
Query: 231 NSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGCDNIFTTHEAQGKTFDNVYFCR 67
NSP ++ ++ TQ EK + LK + T +E QG TF +V R
Sbjct: 382 NSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDSKSANTVNEVQGGTFPSVMLFR 438
[246][TOP]
>UniRef100_Q0GK55 Polyprotein 1a n=2 Tax=Strawberry chlorotic fleck associated virus
RepID=Q0GK55_9CLOS
Length = 2787
Score = 72.4 bits (176), Expect = 2e-11
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 7/172 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH 379
LM VK ++ DECF+ HAG V AA + C + +GD+ QI ++ RN H
Sbjct: 2473 LMHHINVKGDIMLVDECFMMHAGAVTAAFQFSQCKKAALYGDSRQIHYIQRNDLGCSLLH 2532
Query: 378 KLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 214
+ + ++ +++R P D L + + R +S S+ VV INS V
Sbjct: 2533 DINDFLSDEVRVYGDVSFRCPWDVCEWLSLTYPVHIRSTNEDSVGKSSMRVVCINSVEEV 2592
Query: 213 ERNTNALYLCHTQAEKAVLKAQ--THLKGCDNIFTTHEAQGKTFDNVYFCRL 64
+ + +YL +TQ EK ++ + C + T HEAQG T+ V R+
Sbjct: 2593 PVDQDHVYLTYTQDEKRDVRKHLLKSVTDCPVVLTVHEAQGATYKYVNLVRV 2644
[247][TOP]
>UniRef100_O10447 Replicase large subunit n=1 Tax=Odontoglossum ringspot virus
RepID=O10447_9VIRU
Length = 1612
Score = 72.4 bits (176), Expect = 2e-11
Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF-RH 382
LM +L DE + H G V L+ C E + FGDTEQIPF++R +F + +H
Sbjct: 882 LMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYPKH 941
Query: 381 --HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 208
H E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 942 FGHTCLHHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVRGKGVFNP 998
Query: 207 NTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 43
+ L + TQ++KA L + + I T HE QG+TF++V RLT T L
Sbjct: 999 KSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPLEL 1058
Query: 42 TTGRDP 25
+ P
Sbjct: 1059 ISKSSP 1064
[248][TOP]
>UniRef100_P17595 Alpha-A protein n=1 Tax=Barley stripe mosaic virus RepID=VRNA_BSMV
Length = 1139
Score = 72.4 bits (176), Expect = 2e-11
Identities = 63/185 (34%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Frame = -2
Query: 537 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK 364
+A R FDE H G + A G SE++ GD Q+P + R F+ T
Sbjct: 905 QADRFHFDEALKVHYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKT 964
Query: 363 -VERKLITWRSPAD-ATYCLEKYFYKNK---RPVKTNSRVLRSIEVVPINSP-------- 223
+ KL ++R P D A Y K FYK K + V T++ V RS+ +P
Sbjct: 965 IINPKLRSYRIPGDVAFYLSAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLD 1024
Query: 222 VSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNVYFCRLTRTST 49
V V ++T+ YL QAEK L + KG ++I T HEAQG T++NV RL RT
Sbjct: 1025 VPVRKDTH--YLTFLQAEKESLMSHLIPKGVKKESISTIHEAQGGTYENVILVRLQRTPN 1082
Query: 48 SLTTG 34
+ G
Sbjct: 1083 EIYPG 1087
[249][TOP]
>UniRef100_Q6VRA8 ORF 1a/1b fusion polyprotein n=2 Tax=Beet pseudo-yellows virus
RepID=Q6VRA8_9CLOS
Length = 2441
Score = 72.0 bits (175), Expect = 3e-11
Identities = 53/177 (29%), Positives = 75/177 (42%), Gaps = 13/177 (7%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRH- 382
LM L DE F+ H G +A L C + FGD QIP+++R P+ V H
Sbjct: 1697 LMKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQSIECFGDKNQIPYINRVPNTVCHHS 1756
Query: 381 --HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPV--------KTNSRVLRSIEVVPI 232
+T +E I++R P D Y L P+ +N LRS+ V P+
Sbjct: 1757 YSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNPLYPGGVYSAGSNCDNLRSLSVEPM 1816
Query: 231 NSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGCDNIFTTHEAQGKTFDNVYFCR 67
NSP ++ ++ TQ EK + LK + T +E QG TF V R
Sbjct: 1817 NSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDSKSANTVNEVQGGTFPTVMLFR 1873
[250][TOP]
>UniRef100_B9VB32 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB32_9CLOS
Length = 3116
Score = 72.0 bits (175), Expect = 3e-11
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Frame = -2
Query: 558 LMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN-------- 403
LM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2774 LMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLH 2833
Query: 402 --PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 229
+F+ H++ G+V ++R P D +++ ++ S S+ + IN
Sbjct: 2834 DIDAFIQPEHRIYGEV-----SYRCPWDICEWPSEFYPRHVATANVGSIGKSSVSIEEIN 2888
Query: 228 SPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYF 73
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2889 GCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRVRL 2946
Query: 72 CR 67
R
Sbjct: 2947 VR 2948