BB920745 ( RCE26821 )

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[1][TOP]
>UniRef100_A2Q3E0 DNA-directed RNA polymerase, 14 to 18 kDa subunit n=1 Tax=Medicago
           truncatula RepID=A2Q3E0_MEDTR
          Length = 145

 Score =  277 bits (709), Expect = 4e-73
 Identities = 137/145 (94%), Positives = 139/145 (95%), Gaps = 2/145 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAE--PIETEDKEADQPVERPR 233
           MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPD +NDDLDAE  PIETE+KE   PVERPR
Sbjct: 1   MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDNKNDDLDAEGEPIETEEKEDAAPVERPR 60

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
           RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP
Sbjct: 61  RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 120

Query: 414 DGSYEDWGVDELIVEDSWKRQVGGD 488
           DGSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 DGSYEDWGVDELIVEDSWKRQVGGD 145

[2][TOP]
>UniRef100_B7FHE6 Putative uncharacterized protein n=1 Tax=Medicago truncatula
           RepID=B7FHE6_MEDTR
          Length = 145

 Score =  275 bits (704), Expect = 1e-72
 Identities = 136/145 (93%), Positives = 138/145 (95%), Gaps = 2/145 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAE--PIETEDKEADQPVERPR 233
           MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPD +NDDLDAE  PIETE+KE   PVERPR
Sbjct: 1   MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDNKNDDLDAEGEPIETEEKEDVAPVERPR 60

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
           RTSKYMTKYERARI GTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP
Sbjct: 61  RTSKYMTKYERARIFGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 120

Query: 414 DGSYEDWGVDELIVEDSWKRQVGGD 488
           DGSYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 DGSYEDWGVDELIVEDSWKRQVGGD 145

[3][TOP]
>UniRef100_C6SWG7 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SWG7_SOYBN
          Length = 142

 Score =  260 bits (665), Expect = 5e-68
 Identities = 126/143 (88%), Positives = 136/143 (95%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MAD+DYEDIDMGYE+EPPEPEIEEGAEE D + +ND++  E I+TEDKE +QPV+RPR+T
Sbjct: 1   MADEDYEDIDMGYEDEPPEPEIEEGAEE-DVENKNDEITGESIDTEDKEEEQPVKRPRKT 59

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 60  SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 119

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142

[4][TOP]
>UniRef100_B9I4C9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I4C9_POPTR
          Length = 143

 Score =  258 bits (659), Expect = 2e-67
 Identities = 123/143 (86%), Positives = 132/143 (92%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MAD+DY D+DMGYE+EPPEPEIEEG EE+  +  N+D   EPIETEDKE  +PVERPR+T
Sbjct: 1   MADEDYNDVDMGYEDEPPEPEIEEGVEEDADNDNNEDDKGEPIETEDKEEQEPVERPRKT 60

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           SK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGD 143

[5][TOP]
>UniRef100_B9ID35 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9ID35_POPTR
          Length = 143

 Score =  254 bits (650), Expect = 3e-66
 Identities = 122/143 (85%), Positives = 131/143 (91%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MADD+Y D+DMGYE+EP EPEIEEGA+E+  +  N+D   EPIETEDKE   PVERPR+T
Sbjct: 1   MADDEYNDVDMGYEDEPAEPEIEEGADEDAENNNNEDDTGEPIETEDKEEQAPVERPRKT 60

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           SK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGD 143

[6][TOP]
>UniRef100_A7QVJ8 Chromosome chr16 scaffold_189, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QVJ8_VITVI
          Length = 142

 Score =  245 bits (626), Expect = 2e-63
 Identities = 118/143 (82%), Positives = 131/143 (91%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MAD++Y D+DMGYE+EPPEPEIEEGAEEE  +  N+D+  + +E ++KE  + VERPR+T
Sbjct: 1   MADEEYNDVDMGYEDEPPEPEIEEGAEEEAENNNNEDVP-DALEEQEKEVHETVERPRKT 59

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 60  SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 119

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142

[7][TOP]
>UniRef100_Q9FJ98 DNA-directed RNA polymerase II subunit-like protein n=1
           Tax=Arabidopsis thaliana RepID=Q9FJ98_ARATH
          Length = 144

 Score =  244 bits (623), Expect = 3e-63
 Identities = 117/144 (81%), Positives = 132/144 (91%), Gaps = 1/144 (0%)
 Frame = +3

Query: 60  MADDDYEDID-MGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR 236
           MAD+DY D+D +GYE+EP EPEIEEG EE+   K+NDD++ EPIE EDK   +PV+RPR+
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 417 GSYEDWGVDELIVEDSWKRQVGGD 488
           GS+E+WGVDELIVEDSWKRQVGGD
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGGD 144

[8][TOP]
>UniRef100_A7PJQ3 Chromosome chr12 scaffold_18, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PJQ3_VITVI
          Length = 141

 Score =  243 bits (620), Expect = 8e-63
 Identities = 121/143 (84%), Positives = 130/143 (90%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MADDDY D+DMGYE+EPPEPEIEEGAEE+  +  N+D+  + IET +KE   PVER R+T
Sbjct: 1   MADDDYNDMDMGYEDEPPEPEIEEGAEEDADNNNNEDIP-DAIETAEKE-QVPVERSRKT 58

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 59  SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 118

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 119 SYEDWGVDELIVEDSWKRQVGGD 141

[9][TOP]
>UniRef100_Q9SJ96 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Arabidopsis
           thaliana RepID=Q9SJ96_ARATH
          Length = 144

 Score =  243 bits (619), Expect = 1e-62
 Identities = 116/144 (80%), Positives = 132/144 (91%), Gaps = 1/144 (0%)
 Frame = +3

Query: 60  MADDDYEDID-MGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR 236
           MADDDY ++D +GYE+EP EPEIEEG EE+   K+NDD++ +P+ETEDK   +PV+RPR+
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 417 GSYEDWGVDELIVEDSWKRQVGGD 488
            SYE+WGVDELIVEDSWKRQVGGD
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGGD 144

[10][TOP]
>UniRef100_A2XIZ2 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=A2XIZ2_ORYSI
          Length = 143

 Score =  237 bits (605), Expect = 4e-61
 Identities = 120/144 (83%), Positives = 129/144 (89%), Gaps = 2/144 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPI--ETEDKEADQPVERPR 233
           MADDDY D+DMGYE+EPPEPEIEEGAEEE P+  N+D   E +  E EDKE ++  +RPR
Sbjct: 1   MADDDYNDMDMGYEDEPPEPEIEEGAEEE-PENNNEDGPDEVVGAEAEDKEQEK-TQRPR 58

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
           +TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLP
Sbjct: 59  KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLP 118

Query: 414 DGSYEDWGVDELIVEDSWKRQVGG 485
           DGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 119 DGSYEDWGVDELIVEDSWKRQVGG 142

[11][TOP]
>UniRef100_Q8LI69 Os07g0463100 protein n=2 Tax=Oryza sativa RepID=Q8LI69_ORYSJ
          Length = 142

 Score =  236 bits (602), Expect = 9e-61
 Identities = 115/142 (80%), Positives = 125/142 (88%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MA+DDY D+DMGYE+EPPEPEIEEGAEEE P+  N+D   + +  ED +  +   RPR+T
Sbjct: 1   MAEDDYNDMDMGYEDEPPEPEIEEGAEEE-PENNNEDAVDDVVGAEDDKEQEKTARPRKT 59

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60  SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119

Query: 420 SYEDWGVDELIVEDSWKRQVGG 485
           SYEDWGVDELIVEDSWKRQVGG
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGG 141

[12][TOP]
>UniRef100_Q6F2V1 Os03g0586600 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q6F2V1_ORYSJ
          Length = 142

 Score =  236 bits (601), Expect = 1e-60
 Identities = 116/142 (81%), Positives = 126/142 (88%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MADDDY D+DMGYE+EPPEPEIEEGAEEE  + ++   +    E EDKE ++  +RPR+T
Sbjct: 1   MADDDYNDMDMGYEDEPPEPEIEEGAEEEPENNEDGPDEVVGAEAEDKEQEK-TQRPRKT 59

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60  SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119

Query: 420 SYEDWGVDELIVEDSWKRQVGG 485
           SYEDWGVDELIVEDSWKRQVGG
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGG 141

[13][TOP]
>UniRef100_B6SI57 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
           n=1 Tax=Zea mays RepID=B6SI57_MAIZE
          Length = 142

 Score =  232 bits (591), Expect = 2e-59
 Identities = 116/143 (81%), Positives = 126/143 (88%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MADDDY +IDMGYE+EPPEPEIEEGAEEE  + ++   D    E EDKE ++  +R R+T
Sbjct: 1   MADDDYNEIDMGYEDEPPEPEIEEGAEEEPENNEDAPDDVIGGEGEDKEQEK-TKRERKT 59

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60  TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142

[14][TOP]
>UniRef100_B4FLZ6 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FLZ6_MAIZE
          Length = 142

 Score =  231 bits (588), Expect = 4e-59
 Identities = 116/143 (81%), Positives = 126/143 (88%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MADDDY +IDMGYE+EPPEPEIEEGAEEE  + ++   D    E EDKE ++  +R R+T
Sbjct: 1   MADDDYNEIDMGYEDEPPEPEIEEGAEEELENNEDAPDDVIGGEGEDKEQEK-TKRERKT 59

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60  TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142

[15][TOP]
>UniRef100_B6T8K1 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
           n=1 Tax=Zea mays RepID=B6T8K1_MAIZE
          Length = 142

 Score =  229 bits (584), Expect = 1e-58
 Identities = 115/143 (80%), Positives = 125/143 (87%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MA DDY +IDMGYE+EPPEPEIEEGAEEE  + ++   D    E EDKE ++  +R R+T
Sbjct: 1   MAXDDYNEIDMGYEDEPPEPEIEEGAEEEPENNEDAPDDVIGGEGEDKEQEK-TKRERKT 59

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60  TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142

[16][TOP]
>UniRef100_B6TJG4 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
           n=1 Tax=Zea mays RepID=B6TJG4_MAIZE
          Length = 142

 Score =  227 bits (578), Expect = 6e-58
 Identities = 115/143 (80%), Positives = 125/143 (87%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MADDDY +IDMGYE+E PEPEIEEGAEEE  + ++   D    E EDKE ++  +R R+T
Sbjct: 1   MADDDYNEIDMGYEDELPEPEIEEGAEEELENNEDAPDDVIGGEGEDKEQEK-TKRERKT 59

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLPDG
Sbjct: 60  TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDG 119

Query: 420 SYEDWGVDELIVEDSWKRQVGGD 488
           SYEDWGVDELIVEDSWKRQVGGD
Sbjct: 120 SYEDWGVDELIVEDSWKRQVGGD 142

[17][TOP]
>UniRef100_Q9S7Q6 DNA-directed RNA polymerase IIa n=1 Tax=Nicotiana tabacum
           RepID=Q9S7Q6_TOBAC
          Length = 143

 Score =  225 bits (573), Expect = 2e-57
 Identities = 115/144 (79%), Positives = 127/144 (88%), Gaps = 2/144 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPI--ETEDKEADQPVERPR 233
           MADDDY D+D GY +EP EPE +EGAE E+ +  N+D+  +P+  E E+K   +PVERPR
Sbjct: 1   MADDDY-DMDGGYVDEPIEPEPDEGAEIEEDNGNNEDIP-DPLLGEGEEKTEQEPVERPR 58

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
           +TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP
Sbjct: 59  KTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 118

Query: 414 DGSYEDWGVDELIVEDSWKRQVGG 485
           DGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 119 DGSYEDWGVDELIVEDSWKRQVGG 142

[18][TOP]
>UniRef100_C5X5S2 Putative uncharacterized protein Sb02g011150 n=1 Tax=Sorghum
           bicolor RepID=C5X5S2_SORBI
          Length = 143

 Score =  223 bits (569), Expect = 6e-57
 Identities = 114/145 (78%), Positives = 125/145 (86%), Gaps = 2/145 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDL--DAEPIETEDKEADQPVERPR 233
           MADDDY ++DMGYE+EPPE EIEEGAEEE  +  N+D   D    E EDKE ++ + R R
Sbjct: 1   MADDDYNEMDMGYEDEPPEAEIEEGAEEE-LENNNEDTPDDVVGAEAEDKEQEK-IARAR 58

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
           +T+KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR RKIPFTIRRYLP
Sbjct: 59  KTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLP 118

Query: 414 DGSYEDWGVDELIVEDSWKRQVGGD 488
           DGSYEDW VDELIVEDSWKRQVGG+
Sbjct: 119 DGSYEDWSVDELIVEDSWKRQVGGE 143

[19][TOP]
>UniRef100_A3BJH6 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=A3BJH6_ORYSJ
          Length = 177

 Score =  218 bits (556), Expect = 2e-55
 Identities = 115/177 (64%), Positives = 125/177 (70%), Gaps = 35/177 (19%)
 Frame = +3

Query: 60  MADDDYEDIDMG-----------------------------------YEEEPPEPEIEEG 134
           MA+DDY D+DMG                                   YE+EPPEPEIEEG
Sbjct: 1   MAEDDYNDMDMGFASPPPSLARFRRYSFAPSLGFTGTRMSPQNLRLRYEDEPPEPEIEEG 60

Query: 135 AEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAP 314
           AEEE P+  N+D   + +  ED +  +   RPR+TSKYMTKYERARILGTRALQISMNAP
Sbjct: 61  AEEE-PENNNEDAVDDVVGAEDDKEQEKTARPRKTSKYMTKYERARILGTRALQISMNAP 119

Query: 315 VMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 485
           VMVELEGETDPLEIAMKELR RKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 120 VMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 176

[20][TOP]
>UniRef100_A9NU56 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=A9NU56_PICSI
          Length = 147

 Score =  217 bits (553), Expect = 4e-55
 Identities = 114/152 (75%), Positives = 125/152 (82%), Gaps = 9/152 (5%)
 Frame = +3

Query: 60  MADDDYEDID---MGYEEEPPEPEIEEGA---EEEDPDKQNDDL---DAEPIETEDKEAD 212
           MAD+DY D D   +GYEEEPPEPEIEE     EEE  +   D L   D EP+E +     
Sbjct: 1   MADEDYNDFDGGDVGYEEEPPEPEIEEEVAPEEEEHEEVPVDTLGGGDKEPVEQQ----- 55

Query: 213 QPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 392
           +P ++PR+TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF
Sbjct: 56  RPSDKPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 115

Query: 393 TIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 488
           TIRRYLPDGSYEDWGVDELIVEDSW+RQVGGD
Sbjct: 116 TIRRYLPDGSYEDWGVDELIVEDSWRRQVGGD 147

[21][TOP]
>UniRef100_C0PQI2 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=C0PQI2_PICSI
          Length = 147

 Score =  216 bits (550), Expect = 1e-54
 Identities = 114/152 (75%), Positives = 124/152 (81%), Gaps = 9/152 (5%)
 Frame = +3

Query: 60  MADDDYEDID---MGYEEEPPEPEIEEGA---EEEDPDKQNDDL---DAEPIETEDKEAD 212
           MAD+DY D D   +GYEEEPPEPEIEE     EEE  +   D L   D EP+E +     
Sbjct: 1   MADEDYNDFDGGDVGYEEEPPEPEIEEEVAPEEEEHEEVPVDTLGGGDKEPVEQQ----- 55

Query: 213 QPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 392
           +P ++PR+TSK+MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF
Sbjct: 56  RPSDKPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 115

Query: 393 TIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD 488
           TIRRYLPDGSYEDWGVDELIVEDSW RQVGGD
Sbjct: 116 TIRRYLPDGSYEDWGVDELIVEDSWTRQVGGD 147

[22][TOP]
>UniRef100_B9R9F9 DNA-directed RNA polymerase subunit rpb6, putative n=1 Tax=Ricinus
           communis RepID=B9R9F9_RICCO
          Length = 124

 Score =  214 bits (544), Expect = 5e-54
 Identities = 103/121 (85%), Positives = 111/121 (91%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISM 305
           +EGAEE+  +  N+D+  +PIETEDKE  +  ERPR+TSKYMTKYERARILGTRALQISM
Sbjct: 4   QEGAEEDVENNNNEDVPGDPIETEDKEEQEAAERPRKTSKYMTKYERARILGTRALQISM 63

Query: 306 NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 485
           NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 64  NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 123

Query: 486 D 488
           D
Sbjct: 124 D 124

[23][TOP]
>UniRef100_A5AKW7 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5AKW7_VITVI
          Length = 140

 Score =  199 bits (505), Expect = 2e-49
 Identities = 101/121 (83%), Positives = 109/121 (90%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISM 305
           +EGAEE+  +  N+D+  + IET +KE   PVER R+TSKYMTKYERARILGTRALQISM
Sbjct: 22  DEGAEEDADNNNNEDIP-DAIETAEKE-QVPVERSRKTSKYMTKYERARILGTRALQISM 79

Query: 306 NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 485
           NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
Sbjct: 80  NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG 139

Query: 486 D 488
           D
Sbjct: 140 D 140

[24][TOP]
>UniRef100_A9TB02 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp.
           patens RepID=A9TB02_PHYPA
          Length = 119

 Score =  179 bits (455), Expect = 1e-43
 Identities = 89/121 (73%), Positives = 101/121 (83%)
 Frame = +3

Query: 120 EIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQI 299
           E+ EG EE D  +  D L+ + +      A+   ++PR+T+KYMTKYERAR+LGTRALQI
Sbjct: 2   EVAEGDEENDDARDFDGLETDTLVDG---AEVRTDKPRKTTKYMTKYERARVLGTRALQI 58

Query: 300 SMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQV 479
           SMNAPVMV LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSW+RQV
Sbjct: 59  SMNAPVMVNLEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWRRQV 118

Query: 480 G 482
           G
Sbjct: 119 G 119

[25][TOP]
>UniRef100_B7PRL4 RNA polymerase subunit K, putative n=1 Tax=Ixodes scapularis
           RepID=B7PRL4_IXOSC
          Length = 129

 Score =  155 bits (393), Expect = 2e-36
 Identities = 81/134 (60%), Positives = 101/134 (75%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           MADD+YE  D+G  ++  + + +E  +E D   QNDD + E ++  D +  Q   + R T
Sbjct: 1   MADDEYEADDVGGGDDFDDVDEDENLDEID---QNDDENIELLQASDGQPQQ--NQKRIT 55

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           + YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDG
Sbjct: 56  TMYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDG 115

Query: 420 SYEDWGVDELIVED 461
           SYEDWG+DELI+ D
Sbjct: 116 SYEDWGIDELIITD 129

[26][TOP]
>UniRef100_C4WSH1 ACYPI005782 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WSH1_ACYPI
          Length = 132

 Score =  151 bits (381), Expect = 4e-35
 Identities = 77/135 (57%), Positives = 102/135 (75%), Gaps = 1/135 (0%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR- 236
           MAD++++  D G ++     +  +  E + P++  D++D  PI+    EA   V++ +R 
Sbjct: 1   MADEEFDHDDGGADDFDEVEDDADLDELDQPEENEDNIDILPIQ----EAQSQVQKSKRI 56

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T+KYMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP  IRRYLPD
Sbjct: 57  TTKYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKKRKIPIIIRRYLPD 116

Query: 417 GSYEDWGVDELIVED 461
            SYEDWG+DELI+ D
Sbjct: 117 NSYEDWGIDELIIVD 131

[27][TOP]
>UniRef100_UPI000186D3E6 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
           putative n=1 Tax=Pediculus humanus corporis
           RepID=UPI000186D3E6
          Length = 132

 Score =  149 bits (377), Expect = 1e-34
 Identities = 79/135 (58%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR- 236
           M+DD Y+  D+G + +    + ++    ED D+  DD DA    +   EA   V + +R 
Sbjct: 1   MSDDKYDTDDVGEDFD----DADDDDNAEDLDQPEDDADALDPGSISIEAKGSVAKSKRI 56

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T+KYMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP  IRRYLPD
Sbjct: 57  TTKYMTKYERARVLGTRALQIAMGAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPD 116

Query: 417 GSYEDWGVDELIVED 461
            SYEDWG+DELI+ D
Sbjct: 117 HSYEDWGIDELIIID 131

[28][TOP]
>UniRef100_C1EBJ1 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EBJ1_9CHLO
          Length = 138

 Score =  147 bits (370), Expect = 7e-34
 Identities = 76/139 (54%), Positives = 99/139 (71%), Gaps = 2/139 (1%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQP--VERPRRT 239
           D DY+  D  Y+ + P         +++P+ ++ ++    +E  +    Q       R T
Sbjct: 4   DGDYDGGDGAYDYDEP------AGGDDEPEAEDAEMPEGGVEVLEHAPQQGGGAVTERTT 57

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           + YMTKYERARILGTRALQISMNAPV+V+L+GETDPLEIA KELRE++IPFT+RRYLPDG
Sbjct: 58  TPYMTKYERARILGTRALQISMNAPVLVQLDGETDPLEIAGKELREKRIPFTVRRYLPDG 117

Query: 420 SYEDWGVDELIVEDSWKRQ 476
           S+EDWGVDELIVED  +R+
Sbjct: 118 SWEDWGVDELIVEDPDRRR 136

[29][TOP]
>UniRef100_UPI00015B553F PREDICTED: similar to DNA-directed RNA polymerase subunit rpb6 n=1
           Tax=Nasonia vitripennis RepID=UPI00015B553F
          Length = 130

 Score =  144 bits (363), Expect = 5e-33
 Identities = 79/135 (58%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR- 236
           MADD++E  D+  E +  E +     E+++ D +N +L A        EA   V++ +R 
Sbjct: 1   MADDEFEADDVADEFDDVEDDDNIELEQQEDDGENFELVAAG------EASGGVQKSKRI 54

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T+ YMTKYERARILGTRALQISM APVMVELEGETDPL+IAMKEL++RKIP  IRR+LPD
Sbjct: 55  TTGYMTKYERARILGTRALQISMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRFLPD 114

Query: 417 GSYEDWGVDELIVED 461
            SYEDWG+DELI+ D
Sbjct: 115 HSYEDWGIDELIIID 129

[30][TOP]
>UniRef100_UPI000051A425 PREDICTED: similar to RNA polymerase II 18kD subunit CG1163-PA n=1
           Tax=Apis mellifera RepID=UPI000051A425
          Length = 130

 Score =  143 bits (360), Expect = 1e-32
 Identities = 78/143 (54%), Positives = 100/143 (69%), Gaps = 9/143 (6%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDK--------EADQ 215
           MADDD++               +E A++ D    +D+++ EP E + +        EA  
Sbjct: 1   MADDDFDG--------------DEVADDFDDVDDDDNIELEPQEEDGENIELLAAGEATG 46

Query: 216 PVERPRR-TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 392
            V+R +R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL++RKIP 
Sbjct: 47  GVQRSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPI 106

Query: 393 TIRRYLPDGSYEDWGVDELIVED 461
            IRRYLPD SYEDWG+DELI+ D
Sbjct: 107 IIRRYLPDNSYEDWGIDELIIID 129

[31][TOP]
>UniRef100_Q7Q6F5 AGAP005873-PA n=1 Tax=Anopheles gambiae RepID=Q7Q6F5_ANOGA
          Length = 131

 Score =  143 bits (360), Expect = 1e-32
 Identities = 76/136 (55%), Positives = 101/136 (74%), Gaps = 2/136 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDK-EADQPVERPRR 236
           M D DY++ D+G +E       ++  E+++ D+ N + D + IE  +  +A   V + +R
Sbjct: 1   MDDGDYDNDDVGGDE------FDDVEEDDNIDELNQEEDGDNIEIINPGQAGGGVPKNKR 54

Query: 237 -TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
            T+KYMTKYERAR+LGTRALQI+M AP+MVELEGETDPL+IAMKEL++RKIP  IRRYLP
Sbjct: 55  ITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 114

Query: 414 DGSYEDWGVDELIVED 461
           D SYEDW +DELI+ D
Sbjct: 115 DSSYEDWSIDELIIID 130

[32][TOP]
>UniRef100_UPI0000D563C0 PREDICTED: similar to AGAP005873-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D563C0
          Length = 131

 Score =  142 bits (357), Expect = 2e-32
 Identities = 74/136 (54%), Positives = 100/136 (73%), Gaps = 2/136 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMG--YEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPR 233
           M D++++  D+G  ++++  +  IEE    E P+++ D++D   I    +      +  R
Sbjct: 1   MNDEEFDGDDVGDDFDDDVDDDNIEE---LEQPEEEGDNID---ILAHGQAGGGVPKNKR 54

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
            T+KYMTKYERAR+LGTRALQI+M APVMVEL+GETDPL+IAMKEL++RKIP  IRRYLP
Sbjct: 55  ITTKYMTKYERARVLGTRALQIAMCAPVMVELDGETDPLQIAMKELKQRKIPIIIRRYLP 114

Query: 414 DGSYEDWGVDELIVED 461
           D SYEDWG+DELI+ D
Sbjct: 115 DHSYEDWGIDELIIID 130

[33][TOP]
>UniRef100_Q17F62 DNA-directed RNA polymerase subunit rpb6 n=1 Tax=Aedes aegypti
           RepID=Q17F62_AEDAE
          Length = 131

 Score =  142 bits (357), Expect = 2e-32
 Identities = 74/136 (54%), Positives = 98/136 (72%), Gaps = 2/136 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIE--TEDKEADQPVERPR 233
           M D DY++ D+G +E       ++  E+++ D+ N + D + IE  T  +      +  R
Sbjct: 1   MDDGDYDNDDVGGDE------FDDVEEDDNIDELNQEEDGDNIELITPGQAGGGVPKSKR 54

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
            T+KYMTKYERAR+LGTRALQI+M AP+MVELEGETDPL+IAMKEL++RKIP  IRR+LP
Sbjct: 55  ITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRFLP 114

Query: 414 DGSYEDWGVDELIVED 461
           D SYEDW +DELI+ D
Sbjct: 115 DSSYEDWSIDELIIID 130

[34][TOP]
>UniRef100_B0XGQ1 DNA-directed RNA polymeraseI n=1 Tax=Culex quinquefasciatus
           RepID=B0XGQ1_CULQU
          Length = 131

 Score =  142 bits (357), Expect = 2e-32
 Identities = 74/136 (54%), Positives = 98/136 (72%), Gaps = 2/136 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIE--TEDKEADQPVERPR 233
           M D D+++ D+G +E       ++  E+++ D+ N + D + IE  T  +      +  R
Sbjct: 1   MDDGDFDNDDVGGDE------FDDVEEDDNIDEINQEEDGDNIELITPGQSGGGVPKSKR 54

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
            T+KYMTKYERAR+LGTRALQI+M AP+MVELEGETDPL+IAMKEL++RKIP  IRRYLP
Sbjct: 55  ITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 114

Query: 414 DGSYEDWGVDELIVED 461
           D SYEDW +DELI+ D
Sbjct: 115 DASYEDWSIDELIIID 130

[35][TOP]
>UniRef100_UPI0000588F6C PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
           purpuratus RepID=UPI0000588F6C
          Length = 124

 Score =  140 bits (354), Expect = 5e-32
 Identities = 78/136 (57%), Positives = 97/136 (71%), Gaps = 1/136 (0%)
 Frame = +3

Query: 54  LTMADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPR 233
           + + D+D++D D        EP ++E  EEE  D   D +D  P       A + V++  
Sbjct: 7   IVLFDEDFDDGD--------EP-LDEANEEEADD--GDHIDVLP-------AGEGVQQTE 48

Query: 234 R-TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T+ YMTKYERAR+LGTRALQI+MNAPVMVELEGETDPL+IAMKEL+ RKIP  IRRYL
Sbjct: 49  RITTPYMTKYERARVLGTRALQIAMNAPVMVELEGETDPLQIAMKELKARKIPIIIRRYL 108

Query: 411 PDGSYEDWGVDELIVE 458
           PDGSYEDWG DEL+++
Sbjct: 109 PDGSYEDWGCDELVID 124

[36][TOP]
>UniRef100_Q6DGS5 Zgc:92790 n=1 Tax=Danio rerio RepID=Q6DGS5_DANRE
          Length = 127

 Score =  140 bits (354), Expect = 5e-32
 Identities = 75/132 (56%), Positives = 93/132 (70%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSK 245
           D D++D+    E+E P  ++E     ED D++N       ++       Q   + R T++
Sbjct: 10  DGDFDDV----EDEEPLDDLEN---VEDEDQEN-------VQILPAGEGQQANQKRITTQ 55

Query: 246 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 425
           YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGSY
Sbjct: 56  YMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSY 115

Query: 426 EDWGVDELIVED 461
           EDWG DELI+ D
Sbjct: 116 EDWGCDELIITD 127

[37][TOP]
>UniRef100_Q4SCJ6 Chromosome undetermined SCAF14653, whole genome shotgun sequence
           n=1 Tax=Tetraodon nigroviridis RepID=Q4SCJ6_TETNG
          Length = 127

 Score =  140 bits (354), Expect = 5e-32
 Identities = 75/129 (58%), Positives = 90/129 (69%), Gaps = 8/129 (6%)
 Frame = +3

Query: 99  EEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKE--------ADQPVERPRRTSKYMT 254
           E+   + + ++G E+E  D      D E +E ED+E          Q   + R T+ YMT
Sbjct: 5   EDNFDDGDFDDGEEDEGLD------DLENVEDEDQENVQILPAGEGQQANQKRITTPYMT 58

Query: 255 KYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDW 434
           KYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGSYEDW
Sbjct: 59  KYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGSYEDW 118

Query: 435 GVDELIVED 461
           G DELI+ D
Sbjct: 119 GCDELIITD 127

[38][TOP]
>UniRef100_C3YH75 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
           RepID=C3YH75_BRAFL
          Length = 129

 Score =  140 bits (354), Expect = 5e-32
 Identities = 74/131 (56%), Positives = 95/131 (72%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKY 248
           DD++D D  +++   + + EE  +E D  +Q  D + + +   D E   P +  + T+ Y
Sbjct: 3   DDFDDGDQ-FDDVGDDLDDEEPLDELDNVEQEGDENIDVLPAGDGE---PQQLQKITTPY 58

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 428
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGS+E
Sbjct: 59  MTKYERARVLGTRALQIAMGAPVMVELEGETDPLHIAMKELKVRKIPIIIRRYLPDGSFE 118

Query: 429 DWGVDELIVED 461
           DWG+DELI+ D
Sbjct: 119 DWGIDELIILD 129

[39][TOP]
>UniRef100_B8RJ41 DNA-directed RNA polymerase I n=1 Tax=Culex tarsalis
           RepID=B8RJ41_CULTA
          Length = 131

 Score =  140 bits (353), Expect = 7e-32
 Identities = 73/136 (53%), Positives = 98/136 (72%), Gaps = 2/136 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIE--TEDKEADQPVERPR 233
           M D D+++ D+G ++       ++  E+++ D+ N + D + IE  T  +      +  R
Sbjct: 1   MDDGDFDNDDVGGDD------FDDVEEDDNIDEINQEEDGDNIELITPGQAGGGVPKSKR 54

Query: 234 RTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
            T+KYMTKYERAR+LGTRALQI+M AP+MVELEGETDPL+IAMKEL++RKIP  IRRYLP
Sbjct: 55  ITTKYMTKYERARVLGTRALQIAMCAPIMVELEGETDPLQIAMKELKQRKIPIIIRRYLP 114

Query: 414 DGSYEDWGVDELIVED 461
           D SYEDW +DELI+ D
Sbjct: 115 DASYEDWSIDELIIID 130

[40][TOP]
>UniRef100_A8QC94 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
           putative n=1 Tax=Brugia malayi RepID=A8QC94_BRUMA
          Length = 128

 Score =  140 bits (353), Expect = 7e-32
 Identities = 78/128 (60%), Positives = 93/128 (72%), Gaps = 7/128 (5%)
 Frame = +3

Query: 99  EEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSK-------YMTK 257
           E+E  E E+E  A++   ++Q DDLD EP E +D E  Q VE   +T+        +MTK
Sbjct: 3   EDEDYEGEME--ADDFGDEEQMDDLDLEPAE-DDTERIQVVEGSEKTASTERVTTPFMTK 59

Query: 258 YERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWG 437
           YERARILGTRALQI+M APVMVELEGETDPLEIA KEL+ +KIP  +RRYLPDGS+EDW 
Sbjct: 60  YERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKHQKIPLIVRRYLPDGSFEDWS 119

Query: 438 VDELIVED 461
           VDEL V D
Sbjct: 120 VDELDVTD 127

[41][TOP]
>UniRef100_A5DQ74 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
           RepID=A5DQ74_PICGU
          Length = 158

 Score =  140 bits (352), Expect = 9e-32
 Identities = 77/143 (53%), Positives = 96/143 (67%), Gaps = 13/143 (9%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIET-----ED--------KEA 209
           DD++  D   ++E  EPE +  A+  + D +    D   I       ED        KE 
Sbjct: 16  DDFDQPDHFSDDEFQEPEGDNDAQAANGDVEMKAADGRTIVNGGLGPEDSLRRAKTAKEL 75

Query: 210 DQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 389
             P E+ R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RK+P
Sbjct: 76  SIPKEK-RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELTQRKVP 134

Query: 390 FTIRRYLPDGSYEDWGVDELIVE 458
             +RRYLPDGSYEDWG DELIV+
Sbjct: 135 LVVRRYLPDGSYEDWGCDELIVD 157

[42][TOP]
>UniRef100_UPI00016E7833 UPI00016E7833 related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E7833
          Length = 127

 Score =  139 bits (351), Expect = 1e-31
 Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQN-DDLDAEPIETEDKEADQPVERPRRTS 242
           +D+++D D    EE      +EG +    D +N +D D E ++       Q   + R T+
Sbjct: 5   EDNFDDGDFDDAEE------DEGLD----DLENVEDEDQENVQILPAGEGQQANQKRITT 54

Query: 243 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 422
            YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGS
Sbjct: 55  PYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGS 114

Query: 423 YEDWGVDELIVED 461
           YEDWG DELI+ D
Sbjct: 115 YEDWGCDELIISD 127

[43][TOP]
>UniRef100_Q01F81 RNA polymerase subunit K (ISS) n=1 Tax=Ostreococcus tauri
           RepID=Q01F81_OSTTA
          Length = 149

 Score =  139 bits (350), Expect = 2e-31
 Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 12/137 (8%)
 Frame = +3

Query: 87  DMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR---------- 236
           D G + +     +E   +E++ D +  D D   I   D+  D      RR          
Sbjct: 7   DYGDDVDDVVDALEAAEDEDERDLEGGDADGRVIVESDERGDALGTHGRRGTGGAVPRHL 66

Query: 237 --TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
             T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPLEIA KELRE+++PF +RRYL
Sbjct: 67  RTTTPYMTKYERARVLGTRALQISMNAPVLVQLEGETDPLEIAGKELREKRVPFVVRRYL 126

Query: 411 PDGSYEDWGVDELIVED 461
           PDGSYEDW ++ELIV D
Sbjct: 127 PDGSYEDWCIEELIVHD 143

[44][TOP]
>UniRef100_C1BL50 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide
           n=1 Tax=Osmerus mordax RepID=C1BL50_OSMMO
          Length = 127

 Score =  139 bits (349), Expect = 2e-31
 Identities = 71/123 (57%), Positives = 89/123 (72%), Gaps = 2/123 (1%)
 Frame = +3

Query: 99  EEEPPEPEIEEGAEEEDPD--KQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERAR 272
           E+   + + ++G E+E  D  +  +D D E ++       Q   + R T++YMTKYERAR
Sbjct: 5   EDNFDDGDFDDGEEDEGMDDLENAEDEDRENVQILPAGEGQQANQKRITTQYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPD SYEDWG DELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLQIAMKELKGRKIPIIIRRYLPDASYEDWGCDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[45][TOP]
>UniRef100_A3LVF6 Subunit common to RNA polymerases I, II, and III n=1 Tax=Pichia
           stipitis RepID=A3LVF6_PICST
          Length = 157

 Score =  139 bits (349), Expect = 2e-31
 Identities = 73/140 (52%), Positives = 92/140 (65%), Gaps = 10/140 (7%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERP------ 230
           DD++  D   E++  EPE E   +          +       +D  A+QP ++       
Sbjct: 17  DDFDQPDHFSEDDFQEPEGEANGDATMKTADGKTIINGGFGPDDASANQPRQKTAKELAI 76

Query: 231 ----RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 398
               R T+ YMTKYERAR+LGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP  I
Sbjct: 77  PKEKRTTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLVI 136

Query: 399 RRYLPDGSYEDWGVDELIVE 458
           RRYLPDGSYEDWG DELIV+
Sbjct: 137 RRYLPDGSYEDWGCDELIVD 156

[46][TOP]
>UniRef100_B5G123 Putative DNA directed RNA polymerase II polypeptide F variant 2 n=1
           Tax=Taeniopygia guttata RepID=B5G123_TAEGU
          Length = 127

 Score =  138 bits (348), Expect = 3e-31
 Identities = 73/123 (59%), Positives = 87/123 (70%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE-----------RPRRTSKYMTKYERAR 272
           E+  + +D D   +D   E +E  ++E  + VE           + R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLEDLENAEEEGQENVEILPSGERQQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[47][TOP]
>UniRef100_UPI00005ED52B PREDICTED: similar to RNA Polymerase II subunit 14.4 kD n=1
           Tax=Monodelphis domestica RepID=UPI00005ED52B
          Length = 127

 Score =  138 bits (347), Expect = 3e-31
 Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEE-EDPDKQNDDLDAEPIETEDKEADQPVERPRRTS 242
           +D+Y+  D    EE      +EG ++ E+P+++      E +E       Q   + R T+
Sbjct: 5   EDNYDGDDFDDVEE------DEGLDDLENPEEEGQ----ENVEILPSGERQQANQKRITT 54

Query: 243 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 422
            YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGS
Sbjct: 55  PYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGS 114

Query: 423 YEDWGVDELIVED 461
           YEDWGVDELI+ D
Sbjct: 115 YEDWGVDELIITD 127

[48][TOP]
>UniRef100_C3KHY7 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Anoplopoma fimbria RepID=C3KHY7_9PERC
          Length = 127

 Score =  138 bits (347), Expect = 3e-31
 Identities = 76/133 (57%), Positives = 92/133 (69%), Gaps = 1/133 (0%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQN-DDLDAEPIETEDKEADQPVERPRRTS 242
           +D+++D D    EE      +EG +    D +N +D D E ++       Q     R T+
Sbjct: 5   EDNFDDGDFDDAEE------DEGLD----DLENVEDGDRENVQILPAGEGQQANAKRITT 54

Query: 243 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 422
            YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGS
Sbjct: 55  PYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYLPDGS 114

Query: 423 YEDWGVDELIVED 461
           YEDWG DELI+ D
Sbjct: 115 YEDWGCDELIITD 127

[49][TOP]
>UniRef100_Q3TN04 Putative uncharacterized protein n=1 Tax=Mus musculus
           RepID=Q3TN04_MOUSE
          Length = 127

 Score =  138 bits (347), Expect = 3e-31
 Identities = 74/123 (60%), Positives = 88/123 (71%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQASQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ISD 127

[50][TOP]
>UniRef100_C1MWD5 Predicted protein (Fragment) n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MWD5_9CHLO
          Length = 84

 Score =  138 bits (347), Expect = 3e-31
 Identities = 65/82 (79%), Positives = 76/82 (92%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T+ YMTKYERARILGTRALQISMNAPV+V+L+GETDPLEIA KELRE++IPFT+RRYL
Sbjct: 1   RTTTPYMTKYERARILGTRALQISMNAPVLVQLDGETDPLEIAGKELREKRIPFTVRRYL 60

Query: 411 PDGSYEDWGVDELIVEDSWKRQ 476
           PDGS+EDW VDELI+ED  +R+
Sbjct: 61  PDGSFEDWSVDELIIEDPDRRR 82

[51][TOP]
>UniRef100_P61219 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=2
           Tax=Murinae RepID=RPAB2_MOUSE
          Length = 127

 Score =  138 bits (347), Expect = 3e-31
 Identities = 74/123 (60%), Positives = 88/123 (71%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ISD 127

[52][TOP]
>UniRef100_P61218 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=3
           Tax=Euarchontoglires RepID=RPAB2_HUMAN
          Length = 127

 Score =  137 bits (346), Expect = 4e-31
 Identities = 74/123 (60%), Positives = 88/123 (71%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[53][TOP]
>UniRef100_Q17684 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
           n=1 Tax=Caenorhabditis elegans RepID=RPAB2_CAEEL
          Length = 137

 Score =  137 bits (346), Expect = 4e-31
 Identities = 75/137 (54%), Positives = 94/137 (68%), Gaps = 3/137 (2%)
 Frame = +3

Query: 60  MAD-DDYEDIDMG--YEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERP 230
           MAD DDY+D+D     ++   E  IEE  +  D + ++DD   E  E  D+    P    
Sbjct: 1   MADEDDYQDMDNDDFVDDNEMEDVIEEDPQRPDNEDEDDDNVDENFELFDQGKAVPTSE- 59

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
             T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R+IP  +RRYL
Sbjct: 60  HVTTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYL 119

Query: 411 PDGSYEDWGVDELIVED 461
           PDGSYEDW  D+L + D
Sbjct: 120 PDGSYEDWPTDQLQLAD 136

[54][TOP]
>UniRef100_UPI0001560797 PREDICTED: similar to DNA directed RNA polymerase II polypeptide F
           n=1 Tax=Equus caballus RepID=UPI0001560797
          Length = 127

 Score =  137 bits (345), Expect = 6e-31
 Identities = 74/123 (60%), Positives = 88/123 (71%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLEKAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[55][TOP]
>UniRef100_UPI0000EDD2AA PREDICTED: similar to RNA Polymerase II subunit 14.4 kD n=1
           Tax=Ornithorhynchus anatinus RepID=UPI0000EDD2AA
          Length = 127

 Score =  137 bits (345), Expect = 6e-31
 Identities = 72/123 (58%), Positives = 87/123 (70%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE-----------RPRRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE           + R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERQQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[56][TOP]
>UniRef100_Q6DDA6 Polymerase (RNA) II (DNA directed) polypeptide F n=2 Tax=Xenopus
           (Silurana) tropicalis RepID=Q6DDA6_XENTR
          Length = 127

 Score =  137 bits (345), Expect = 6e-31
 Identities = 72/114 (63%), Positives = 84/114 (73%), Gaps = 6/114 (5%)
 Frame = +3

Query: 138 EEEDPDKQNDDLDAEPIETEDKEA------DQPVERPRRTSKYMTKYERARILGTRALQI 299
           ++ + D+  DDLD    E ++  A       Q   + R T+ YMTKYERAR+LGTRALQI
Sbjct: 14  DDVEEDEGLDDLDNAEEEDQENVAILPAGEGQQANQKRITTNYMTKYERARVLGTRALQI 73

Query: 300 SMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 461
           +M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 74  AMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127

[57][TOP]
>UniRef100_C1C4U6 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=2
           Tax=Anura RepID=C1C4U6_RANCA
          Length = 127

 Score =  137 bits (345), Expect = 6e-31
 Identities = 74/116 (63%), Positives = 85/116 (73%), Gaps = 8/116 (6%)
 Frame = +3

Query: 138 EEEDPDKQNDDLDAEPIETEDKE--------ADQPVERPRRTSKYMTKYERARILGTRAL 293
           ++ + D+  DDLD    E ED+E          Q   + R T+ YMTKYERAR+LGTRAL
Sbjct: 14  DDVEEDEGLDDLDNA--EEEDRENVAILPAGEGQQANQKRITTNYMTKYERARVLGTRAL 71

Query: 294 QISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 461
           QI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 72  QIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127

[58][TOP]
>UniRef100_C4Y9V4 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4Y9V4_CLAL4
          Length = 156

 Score =  137 bits (345), Expect = 6e-31
 Identities = 75/150 (50%), Positives = 94/150 (62%), Gaps = 9/150 (6%)
 Frame = +3

Query: 39  FNSLPLTMADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQN---------DDLDAEPIE 191
           +N  P    D D  D     E   P+P   +   + +   ++          + DA+   
Sbjct: 8   YNEAPENFEDFDAPDHFSDDEFADPDPVSHQNGNDAEMKAEDGRTIVHGGYSEADAQVRV 67

Query: 192 TEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 371
              KE   P E  R T+ YMTKYERAR+LGTRALQIS+NAPV+V++EGETDPL+IAMKEL
Sbjct: 68  KTTKELAIPKE-DRTTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKEL 126

Query: 372 RERKIPFTIRRYLPDGSYEDWGVDELIVED 461
            +RKIP  IRRYLPDGSYEDWG DELI+E+
Sbjct: 127 AQRKIPLVIRRYLPDGSYEDWGCDELIIEN 156

[59][TOP]
>UniRef100_Q9PT88 RNA polymerase common subunit RPB6 n=2 Tax=Gallus gallus
           RepID=Q9PT88_CHICK
          Length = 127

 Score =  137 bits (344), Expect = 8e-31
 Identities = 72/123 (58%), Positives = 87/123 (70%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE-----------RPRRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE           + R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENVEEEGQENVEILPSGERQAANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[60][TOP]
>UniRef100_B9ENN4 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Salmo salar RepID=B9ENN4_SALSA
          Length = 127

 Score =  137 bits (344), Expect = 8e-31
 Identities = 77/132 (58%), Positives = 93/132 (70%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSK 245
           + DY+D D    EE    +  E  E+ED     +++   P   E  +A+Q     R T++
Sbjct: 5   EGDYDDGDFDDAEEDEGLDDLENVEDED----QENVKILPAG-EGSQANQK----RITTQ 55

Query: 246 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 425
           YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGSY
Sbjct: 56  YMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSY 115

Query: 426 EDWGVDELIVED 461
           EDWG DELI+ D
Sbjct: 116 EDWGCDELIITD 127

[61][TOP]
>UniRef100_C5M8H0 DNA-directed RNA polymerases I n=1 Tax=Candida tropicalis MYA-3404
           RepID=C5M8H0_CANTT
          Length = 213

 Score =  137 bits (344), Expect = 8e-31
 Identities = 75/141 (53%), Positives = 96/141 (68%), Gaps = 5/141 (3%)
 Frame = +3

Query: 51  PLTMADDDYEDI-----DMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQ 215
           P   +D++Y+D      D   +       I  G   +D  + N    ++PI+   +E   
Sbjct: 77  PDHFSDNEYDDPTQNGGDAALQTTDGRTIINGGFGPDDAAQAN----SQPIKKTTRELAI 132

Query: 216 PVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 395
           P ++ R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP  
Sbjct: 133 PKDK-RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLV 191

Query: 396 IRRYLPDGSYEDWGVDELIVE 458
           IRRYLPDGSYEDWG DELIV+
Sbjct: 192 IRRYLPDGSYEDWGCDELIVD 212

[62][TOP]
>UniRef100_B2R4H6 cDNA, FLJ92093, highly similar to Homo sapiens polymerase (RNA) II
           (DNA directed) polypeptide F (POLR2F), mRNA n=1 Tax=Homo
           sapiens RepID=B2R4H6_HUMAN
          Length = 127

 Score =  136 bits (343), Expect = 1e-30
 Identities = 74/123 (60%), Positives = 87/123 (70%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E   +E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAKEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[63][TOP]
>UniRef100_UPI00004A5242 PREDICTED: similar to DNA directed RNA polymerase II polypeptide F
           isoform 1 n=1 Tax=Canis lupus familiaris
           RepID=UPI00004A5242
          Length = 127

 Score =  136 bits (342), Expect = 1e-30
 Identities = 74/123 (60%), Positives = 87/123 (70%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D     +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLGDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[64][TOP]
>UniRef100_B9ELF2 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Salmo salar RepID=B9ELF2_SALSA
          Length = 127

 Score =  136 bits (342), Expect = 1e-30
 Identities = 74/125 (59%), Positives = 91/125 (72%), Gaps = 9/125 (7%)
 Frame = +3

Query: 114 EPEIEEGA-EEEDPDKQNDDLDAEPIETEDKE--------ADQPVERPRRTSKYMTKYER 266
           E + ++G  ++ + D+  DDL  E +E ED+E              + R T++YMTKYER
Sbjct: 5   EGDFDDGDFDDAEEDEGLDDL--ENVEDEDQENVKILPAGEGSQANQKRITTQYMTKYER 62

Query: 267 ARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDE 446
           AR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGSYEDWG DE
Sbjct: 63  ARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDWGCDE 122

Query: 447 LIVED 461
           LI+ D
Sbjct: 123 LIITD 127

[65][TOP]
>UniRef100_Q32PE0 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Bos taurus RepID=RPAB2_BOVIN
          Length = 127

 Score =  136 bits (342), Expect = 1e-30
 Identities = 74/123 (60%), Positives = 87/123 (70%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E    VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQVNVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ITD 127

[66][TOP]
>UniRef100_Q2F660 DNA-directed RNA polymerase subunit 6-like protein n=1 Tax=Bombyx
           mori RepID=Q2F660_BOMMO
          Length = 132

 Score =  135 bits (341), Expect = 2e-30
 Identities = 77/137 (56%), Positives = 96/137 (70%), Gaps = 3/137 (2%)
 Frame = +3

Query: 60  MADDDYEDIDMG--YEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPR 233
           MAD++YE  D G  Y++   E +  E  EE++ D  N    A        +A   V++ +
Sbjct: 1   MADEEYEADDGGADYDDIAEEDDNIEETEEQEEDGYNVQCLAWG------QAGGGVDKSK 54

Query: 234 R-TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+  KIP  IRRYL
Sbjct: 55  RITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKHGKIPIIIRRYL 114

Query: 411 PDGSYEDWGVDELIVED 461
           PD SYEDW +DELI+ D
Sbjct: 115 PDHSYEDWSIDELIIID 131

[67][TOP]
>UniRef100_Q59QT0 DNA-directed RNA polymerases I n=1 Tax=Candida albicans
           RepID=Q59QT0_CANAL
          Length = 157

 Score =  135 bits (341), Expect = 2e-30
 Identities = 70/100 (70%), Positives = 81/100 (81%), Gaps = 2/100 (2%)
 Frame = +3

Query: 165 DDLDA--EPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGE 338
           DD  A  +P +   KE   P E+ R T+ YMTKYERARILGTRALQIS+NAPV+V++EGE
Sbjct: 58  DDAQAAGQPRKKTTKELAIPKEK-RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGE 116

Query: 339 TDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           TDPL+IAMKEL +RKIP  IRRYLPDGSYEDWG DELIV+
Sbjct: 117 TDPLQIAMKELAQRKIPLVIRRYLPDGSYEDWGCDELIVD 156

[68][TOP]
>UniRef100_B9WHP7 RNA polymerase subunit common to RNA polymerases I, II, and III,
           putative n=1 Tax=Candida dubliniensis CD36
           RepID=B9WHP7_CANDC
          Length = 157

 Score =  135 bits (340), Expect = 2e-30
 Identities = 67/94 (71%), Positives = 79/94 (84%)
 Frame = +3

Query: 177 AEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEI 356
           ++P +   KE   P E+ R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+I
Sbjct: 64  SQPRKKTTKELAIPKEK-RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQI 122

Query: 357 AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           AMKEL +RKIP  IRRYLPDGSYEDWG DELIV+
Sbjct: 123 AMKELAQRKIPLVIRRYLPDGSYEDWGCDELIVD 156

[69][TOP]
>UniRef100_A8WSV7 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2
           n=1 Tax=Caenorhabditis briggsae RepID=RPAB2_CAEBR
          Length = 138

 Score =  135 bits (340), Expect = 2e-30
 Identities = 72/135 (53%), Positives = 94/135 (69%), Gaps = 3/135 (2%)
 Frame = +3

Query: 66  DDDYEDIDMG--YEEEPPEPEIEEGAEEEDPDKQNDDLDA-EPIETEDKEADQPVERPRR 236
           DDDY+D+D     ++   E  IEE  +  D ++++DD +  E  E  D+    P      
Sbjct: 4   DDDYQDMDNDDFVDDNEMEDVIEEEQQRPDHEEEDDDNNVDENFELFDQGKAVPTSE-HV 62

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL++R++P  IRRYLPD
Sbjct: 63  TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRVPIIIRRYLPD 122

Query: 417 GSYEDWGVDELIVED 461
           GSYEDW  ++L + D
Sbjct: 123 GSYEDWPTEQLQLAD 137

[70][TOP]
>UniRef100_UPI000180D2B9 PREDICTED: similar to DNA directed RNA polymerase II polypeptide F
           n=1 Tax=Ciona intestinalis RepID=UPI000180D2B9
          Length = 128

 Score =  135 bits (339), Expect = 3e-30
 Identities = 69/117 (58%), Positives = 89/117 (76%), Gaps = 6/117 (5%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDA-----EPIETEDKEADQPVERPRR-TSKYMTKYERARILGTR 287
           ++G + +D    N+ LDA     + +E  D    + +E  +R T+ Y+TKYERAR+LGTR
Sbjct: 13  DDGGDMDDVGDANE-LDAVEDEGQGVEILDATEGRQIEPTKRITTPYLTKYERARVLGTR 71

Query: 288 ALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           ALQ+SMNAPVMVELEGETDPL+IAMKEL+ +KIP  IRRY+PDGSYEDW +DELI+E
Sbjct: 72  ALQLSMNAPVMVELEGETDPLQIAMKELKAKKIPIIIRRYMPDGSYEDWAIDELIIE 128

[71][TOP]
>UniRef100_C1BXK5 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Esox lucius RepID=C1BXK5_ESOLU
          Length = 127

 Score =  135 bits (339), Expect = 3e-30
 Identities = 74/125 (59%), Positives = 91/125 (72%), Gaps = 9/125 (7%)
 Frame = +3

Query: 114 EPEIEEGA-EEEDPDKQNDDLDAEPIETEDKEADQ--------PVERPRRTSKYMTKYER 266
           E + ++G  ++ + D+  DDL  E +E +D+E  Q           + R T+ YMTKYER
Sbjct: 5   EGDFDDGDFDDAEEDEGLDDL--ENVEDDDQENVQILPAGEGSQANQKRITTPYMTKYER 62

Query: 267 ARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDE 446
           AR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGSYEDWG DE
Sbjct: 63  ARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKCRKIPIIIRRYLPDGSYEDWGCDE 122

Query: 447 LIVED 461
           LI+ D
Sbjct: 123 LIITD 127

[72][TOP]
>UniRef100_B4JSM8 GH17834 n=1 Tax=Drosophila grimshawi RepID=B4JSM8_DROGR
          Length = 131

 Score =  135 bits (339), Expect = 3e-30
 Identities = 71/137 (51%), Positives = 98/137 (71%), Gaps = 2/137 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPD-KQNDDLDAEPIETEDKEADQPVERPRR 236
           M + DY++ D+G ++       ++  E+ D D  Q +++D   I      A   V + +R
Sbjct: 1   MDEGDYDNDDVGNDD------FDDADEDVDEDIAQEEEVDNIEIIAPGGTAGGGVPKSKR 54

Query: 237 -TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
            T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLP
Sbjct: 55  ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLP 114

Query: 414 DGSYEDWGVDELIVEDS 464
           D SYEDW +DEL++ D+
Sbjct: 115 DHSYEDWSIDELVMVDN 131

[73][TOP]
>UniRef100_Q6C2U5 YALI0F05082p n=1 Tax=Yarrowia lipolytica RepID=Q6C2U5_YARLI
          Length = 152

 Score =  135 bits (339), Expect = 3e-30
 Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 12/139 (8%)
 Frame = +3

Query: 78  EDIDMGYEEEPPE--PEIEEGAEEEDPDKQNDD---LDAEPIETEDKEADQPVERP---- 230
           ++ +  YEEE  E   ++EE  EE   D   D    ++ E +E  +K   +   R     
Sbjct: 13  DNFENAYEEEFEEHVSDVEENGEEVKTDVAEDGRQIVNGEGVENFEKAVRRKTVRELAIP 72

Query: 231 ---RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 401
              R T+ YMTKYERAR+LGTRALQISMNAP++V++E  TDPL+IAMKEL+++KIP  IR
Sbjct: 73  REERTTTPYMTKYERARVLGTRALQISMNAPILVDIENATDPLQIAMKELQQKKIPLVIR 132

Query: 402 RYLPDGSYEDWGVDELIVE 458
           RYLPDGS+EDWG DELIV+
Sbjct: 133 RYLPDGSFEDWGCDELIVD 151

[74][TOP]
>UniRef100_UPI0001A2CF73 hypothetical protein LOC436817 n=1 Tax=Danio rerio
           RepID=UPI0001A2CF73
          Length = 97

 Score =  134 bits (338), Expect = 4e-30
 Identities = 66/96 (68%), Positives = 76/96 (79%)
 Frame = +3

Query: 174 DAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLE 353
           D E ++       Q   + R T++YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+
Sbjct: 2   DQENVQILPAGEGQQANQKRITTQYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQ 61

Query: 354 IAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 461
           IAMKEL+ RKIP  IRRYLPDGSYEDWG DELI+ D
Sbjct: 62  IAMKELKSRKIPIIIRRYLPDGSYEDWGCDELIITD 97

[75][TOP]
>UniRef100_C3KH99 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Anoplopoma fimbria RepID=C3KH99_9PERC
          Length = 127

 Score =  134 bits (338), Expect = 4e-30
 Identities = 74/133 (55%), Positives = 91/133 (68%), Gaps = 1/133 (0%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQN-DDLDAEPIETEDKEADQPVERPRRTS 242
           +D+++D D    EE      +EG +    D +N +D D E ++       Q     R T+
Sbjct: 5   EDNFDDGDFDDAEE------DEGLD----DLENVEDGDRENVQILPAGEGQQANAKRITT 54

Query: 243 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 422
            YMTKYERAR+LGTRALQI+  APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGS
Sbjct: 55  PYMTKYERARVLGTRALQIATCAPVMVELEGETDPLQIAMKELKSRKIPTIIRRYLPDGS 114

Query: 423 YEDWGVDELIVED 461
           YEDWG DEL++ D
Sbjct: 115 YEDWGCDELVITD 127

[76][TOP]
>UniRef100_B8C3F5 Dna-directed RNA polymerase i (Fragment) n=1 Tax=Thalassiosira
           pseudonana CCMP1335 RepID=B8C3F5_THAPS
          Length = 76

 Score =  134 bits (338), Expect = 4e-30
 Identities = 63/76 (82%), Positives = 72/76 (94%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T++Y+TKYERAR+LGTRALQISMNAPVMV+LEGETDPL+IA KELRERKIP  IRRYL
Sbjct: 1   RITTRYLTKYERARVLGTRALQISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYL 60

Query: 411 PDGSYEDWGVDELIVE 458
           PDGS+EDWG+DELIV+
Sbjct: 61  PDGSHEDWGIDELIVD 76

[77][TOP]
>UniRef100_A4RSJ5 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus
           CCE9901 RepID=A4RSJ5_OSTLU
          Length = 81

 Score =  134 bits (338), Expect = 4e-30
 Identities = 62/75 (82%), Positives = 71/75 (94%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPLEIA KELRE+++PF +RRY+
Sbjct: 7   RTTTPYMTKYERARILGTRALQISMNAPVLVQLEGETDPLEIAGKELREKRVPFVVRRYM 66

Query: 411 PDGSYEDWGVDELIV 455
           PDGSYEDWG+DELIV
Sbjct: 67  PDGSYEDWGIDELIV 81

[78][TOP]
>UniRef100_B3LZJ3 GF17248 n=1 Tax=Drosophila ananassae RepID=B3LZJ3_DROAN
          Length = 131

 Score =  134 bits (338), Expect = 4e-30
 Identities = 71/137 (51%), Positives = 103/137 (75%), Gaps = 2/137 (1%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEE-DPDKQNDDLDAEPIETEDKEADQPVERPRR 236
           M D +Y++ D+G ++     +++E  +E+ +P+++ D+++   I      A   V + +R
Sbjct: 1   MDDGEYDNDDVGGDDFD---DVDEDVDEDINPEEEVDNIE---IIAPGGAAGGGVPKSKR 54

Query: 237 -TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLP 413
            T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLP
Sbjct: 55  ITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLP 114

Query: 414 DGSYEDWGVDELIVEDS 464
           D SYEDW +DELI+ D+
Sbjct: 115 DHSYEDWSIDELIMVDN 131

[79][TOP]
>UniRef100_Q1DXT5 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
           RepID=Q1DXT5_COCIM
          Length = 142

 Score =  134 bits (338), Expect = 4e-30
 Identities = 69/137 (50%), Positives = 98/137 (71%), Gaps = 10/137 (7%)
 Frame = +3

Query: 72  DYEDID-MGYEEEPPEPEIEEGAEEE--DPDKQNDDL-------DAEPIETEDKEADQPV 221
           D+ED D  G++ EPPE +  +   E+   P+++ ++        D +P+  + +E   P 
Sbjct: 7   DHEDRDETGFDYEPPEYDYIDNEPEDYVSPEQEAEEGAYAVLNGDGQPVMLQQREKKVPN 66

Query: 222 ERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIR 401
           ++ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+IA+KEL ++KIP  +R
Sbjct: 67  DQ-RTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPLIVR 125

Query: 402 RYLPDGSYEDWGVDELI 452
           RYLPDG YEDW  +EL+
Sbjct: 126 RYLPDGWYEDWTCEELL 142

[80][TOP]
>UniRef100_UPI00004EEF96 PREDICTED: similar to DNA directed RNA polymerase II polypeptide F
           n=1 Tax=Bos taurus RepID=UPI00004EEF96
          Length = 127

 Score =  134 bits (337), Expect = 5e-30
 Identities = 72/121 (59%), Positives = 87/121 (71%), Gaps = 11/121 (9%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYE+AR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYEQAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 V 455
           +
Sbjct: 125 I 125

[81][TOP]
>UniRef100_C3KI93 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Anoplopoma fimbria RepID=C3KI93_9PERC
          Length = 127

 Score =  134 bits (337), Expect = 5e-30
 Identities = 72/132 (54%), Positives = 90/132 (68%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSK 245
           +D+++D D    EE  +  +++    ED D++N       ++       Q     R T+ 
Sbjct: 5   EDNFDDGDFDDAEE--DGGLDDLENVEDGDREN-------VQILPAGEGQQANAKRITTP 55

Query: 246 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 425
           YMTKYERAR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+ RKIP  IRRY PDGSY
Sbjct: 56  YMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKSRKIPIIIRRYPPDGSY 115

Query: 426 EDWGVDELIVED 461
           EDWG DELI+ D
Sbjct: 116 EDWGCDELIITD 127

[82][TOP]
>UniRef100_Q296B8 GA11109 n=2 Tax=pseudoobscura subgroup RepID=Q296B8_DROPS
          Length = 131

 Score =  133 bits (335), Expect = 8e-30
 Identities = 70/136 (51%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEE-DPDKQNDDLDAEPIETEDKEADQPVERPRR 236
           M ++DY + D+G ++     +++E  +E+ +P+++ D++  E I           +  R 
Sbjct: 1   MDEEDYGNDDVGGDDFD---DVDEDVDEDINPEEEADNI--EIIAPGGTGGGGVPKSKRI 55

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLPD
Sbjct: 56  TTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPD 115

Query: 417 GSYEDWGVDELIVEDS 464
            SYEDW +DELI+ D+
Sbjct: 116 HSYEDWSIDELIMVDN 131

[83][TOP]
>UniRef100_Q6BPY7 DEHA2E09812p n=1 Tax=Debaryomyces hansenii RepID=Q6BPY7_DEBHA
          Length = 158

 Score =  133 bits (334), Expect = 1e-29
 Identities = 70/141 (49%), Positives = 94/141 (66%), Gaps = 11/141 (7%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIE-EGAEEEDPDKQ--------NDDLDAEPIETEDKEADQPV 221
           +D++  D   E++  EP  E E     D + +        N  L  + ++   K A +  
Sbjct: 17  EDFDQADHFSEDDFNEPAAENENVNNGDVEMKATDGRTIINGGLGPDEVQPRPKSARELA 76

Query: 222 --ERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 395
             +  R T+ YMTKYERAR+LGTRALQIS+NAPV+V++EGETDPL+IAMKEL +RKIP  
Sbjct: 77  VPKEDRTTTPYMTKYERARVLGTRALQISLNAPVLVDIEGETDPLQIAMKELAQRKIPLV 136

Query: 396 IRRYLPDGSYEDWGVDELIVE 458
           +RRYLPDGS+EDWG DELI++
Sbjct: 137 VRRYLPDGSFEDWGCDELIID 157

[84][TOP]
>UniRef100_Q24320 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=3
           Tax=melanogaster subgroup RepID=RPAB2_DROME
          Length = 131

 Score =  133 bits (334), Expect = 1e-29
 Identities = 70/135 (51%), Positives = 96/135 (71%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           M D DY++ D+G ++     +++E  +E+   ++  D + E I           +  R T
Sbjct: 1   MDDADYDNDDVGGDDFD---DVDEDVDEDINQEEEAD-NIEIIAPGGAGGGGVPKSKRIT 56

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLPD 
Sbjct: 57  TKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDH 116

Query: 420 SYEDWGVDELIVEDS 464
           SYEDW +DELI+ D+
Sbjct: 117 SYEDWSIDELIMVDN 131

[85][TOP]
>UniRef100_C4R1V1 RNA polymerase subunit ABC23, common to RNA polymerases I, II, and
           III n=1 Tax=Pichia pastoris GS115 RepID=C4R1V1_PICPG
          Length = 155

 Score =  132 bits (333), Expect = 1e-29
 Identities = 62/81 (76%), Positives = 73/81 (90%)
 Frame = +3

Query: 219 VERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 398
           ++  R T+ Y+TKYERARILGTRALQISMNAPV+V++EGETDPL+IAMKEL +RKIP  I
Sbjct: 75  LKEERTTTPYLTKYERARILGTRALQISMNAPVLVDIEGETDPLQIAMKELSQRKIPLVI 134

Query: 399 RRYLPDGSYEDWGVDELIVED 461
           RRYLPDGSYEDWG DELIV++
Sbjct: 135 RRYLPDGSYEDWGCDELIVDN 155

[86][TOP]
>UniRef100_Q54FA8 DNA-directed RNA polymerases I, II, and III subunit rpabc2 n=1
           Tax=Dictyostelium discoideum RepID=RPAB2_DICDI
          Length = 133

 Score =  132 bits (333), Expect = 1e-29
 Identities = 72/133 (54%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEG-AEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR 236
           MAD +    D GYEE       EE   EE +  +   D+     +    EA +     R+
Sbjct: 1   MADFEGGGDDGGYEEFDEGGGFEEEYVEETETTEAYTDIIDPSADANTAEAGRIPNHLRK 60

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T++YMTKYERAR+LG+RALQISMNAP+MVELEGETDPL+IA KELR +KIP  IRR+LP+
Sbjct: 61  TTRYMTKYERARLLGSRALQISMNAPIMVELEGETDPLQIAWKELRAKKIPLIIRRFLPN 120

Query: 417 GSYEDWGVDELIV 455
           G YEDW VDEL +
Sbjct: 121 GMYEDWSVDELSI 133

[87][TOP]
>UniRef100_B7FS37 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP
           1055/1 RepID=B7FS37_PHATR
          Length = 129

 Score =  132 bits (332), Expect = 2e-29
 Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 4/124 (3%)
 Frame = +3

Query: 99  EEEPPEPEIEEGAEEE----DPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYER 266
           +E+P E   ++  EE+    D     DD     I     +        R T++Y+TKYER
Sbjct: 6   DEDPMEDGTQQIREEDEDGLDISGDRDDGGETTIVGIGPDGGGTARSERITTRYLTKYER 65

Query: 267 ARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDE 446
           AR+LGTRALQISMNAPVMV+L+GETDPL IA KELRERKIP  IRRYLPDGS+EDW VDE
Sbjct: 66  ARVLGTRALQISMNAPVMVDLDGETDPLRIAEKELRERKIPIIIRRYLPDGSHEDWSVDE 125

Query: 447 LIVE 458
           L+V+
Sbjct: 126 LVVD 129

[88][TOP]
>UniRef100_B4KC04 GI22548 n=1 Tax=Drosophila mojavensis RepID=B4KC04_DROMO
          Length = 131

 Score =  132 bits (332), Expect = 2e-29
 Identities = 70/136 (51%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR- 236
           M D +Y++ D+G ++     +++E  +E+    Q +++D   I      A   V + +R 
Sbjct: 1   MDDGEYDNDDVGGDDFD---DVDEDVDEDIA--QEEEVDNIEIIAPGGAAGGGVPKSKRI 55

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRR+LPD
Sbjct: 56  TTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLPD 115

Query: 417 GSYEDWGVDELIVEDS 464
            SYEDW +DELI+ D+
Sbjct: 116 HSYEDWSIDELIMVDN 131

[89][TOP]
>UniRef100_C5DB92 KLTH0A00660p n=1 Tax=Lachancea thermotolerans CBS 6340
           RepID=C5DB92_LACTC
          Length = 155

 Score =  132 bits (332), Expect = 2e-29
 Identities = 75/148 (50%), Positives = 92/148 (62%), Gaps = 8/148 (5%)
 Frame = +3

Query: 39  FNSLPLTMADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQ--NDDLDAEPIETEDKEAD 212
           FN  P    D D E        + PE E ++G  +++  K        AE  +  +    
Sbjct: 8   FNDGPENFEDFDNEHFSDAEVYDAPE-EFKDGETKDESGKTIITGGTGAEDFQQHESNRK 66

Query: 213 QPVERP------RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 374
           + ++        R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL 
Sbjct: 67  RTLKEKAIPKDERTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELA 126

Query: 375 ERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           E+KIP  IRRYLPDGS+EDW V+ELIV+
Sbjct: 127 EKKIPLVIRRYLPDGSFEDWSVEELIVD 154

[90][TOP]
>UniRef100_A7TF04 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
           DSM 70294 RepID=A7TF04_VANPO
          Length = 153

 Score =  132 bits (332), Expect = 2e-29
 Identities = 74/133 (55%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPEPE----IEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           D E+ + G+ +   + E    I  G    D ++QND    + +    KE   P +  R T
Sbjct: 25  DEENFEEGFRDGETKNEEGKTIITGGLGPDDNQQNDIFRRKTL----KERAIP-KNDRTT 79

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           + YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP  IRRYLPDG
Sbjct: 80  TPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDG 139

Query: 420 SYEDWGVDELIVE 458
           S+EDW V+EL+V+
Sbjct: 140 SFEDWSVEELVVD 152

[91][TOP]
>UniRef100_A5E2K4 DNA-directed RNA polymerases I n=1 Tax=Lodderomyces elongisporus
           RepID=A5E2K4_LODEL
          Length = 165

 Score =  132 bits (332), Expect = 2e-29
 Identities = 65/86 (75%), Positives = 75/86 (87%)
 Frame = +3

Query: 201 KEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRER 380
           +E   P E+ R T+ YMTKYERARILGTRALQIS+NAPV+V++EGETDPL+IAMKEL +R
Sbjct: 80  RELAIPKEK-RTTTPYMTKYERARILGTRALQISLNAPVLVDIEGETDPLQIAMKELAQR 138

Query: 381 KIPFTIRRYLPDGSYEDWGVDELIVE 458
           KIP  IRRYLPDGSYEDWG DELIV+
Sbjct: 139 KIPLVIRRYLPDGSYEDWGCDELIVD 164

[92][TOP]
>UniRef100_P20435 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=4
           Tax=Saccharomyces cerevisiae RepID=RPAB2_YEAST
          Length = 155

 Score =  132 bits (332), Expect = 2e-29
 Identities = 76/150 (50%), Positives = 95/150 (63%), Gaps = 19/150 (12%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDP---DKQNDDLDAEPIET-----EDKEADQPV 221
           ++ + D +  +E+   E   +E   EE P   D +  D + + I T     ED +  + +
Sbjct: 5   EEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQI 64

Query: 222 ERP-----------RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE 368
            R            R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKE
Sbjct: 65  RRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKE 124

Query: 369 LRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           L E+KIP  IRRYLPDGS+EDW V+ELIV+
Sbjct: 125 LAEKKIPLVIRRYLPDGSFEDWSVEELIVD 154

[93][TOP]
>UniRef100_Q3TES3 Putative uncharacterized protein n=1 Tax=Mus musculus
           RepID=Q3TES3_MOUSE
          Length = 127

 Score =  131 bits (330), Expect = 3e-29
 Identities = 72/123 (58%), Positives = 86/123 (69%), Gaps = 11/123 (8%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPV------ERP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + V      ERP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVKILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +LGTRALQI+M APVMVELE ETDPL IAMK L+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELELETDPLLIAMKGLKARKIPIIIRRYLPDGSYEDWGVDELI 124

Query: 453 VED 461
           + D
Sbjct: 125 ISD 127

[94][TOP]
>UniRef100_B4I3Z2 GM10803 n=1 Tax=Drosophila sechellia RepID=B4I3Z2_DROSE
          Length = 131

 Score =  131 bits (330), Expect = 3e-29
 Identities = 69/135 (51%), Positives = 95/135 (70%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           M D DY++  +G ++     +++E  +E+   ++  D + E I           +  R T
Sbjct: 1   MDDADYDNCSVGGDDFD---DVDEDVDEDINQEEEAD-NIEIIAPGGAGGGGVPKSKRIT 56

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRRYLPD 
Sbjct: 57  TKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDH 116

Query: 420 SYEDWGVDELIVEDS 464
           SYEDW +DELI+ D+
Sbjct: 117 SYEDWSIDELIMVDN 131

[95][TOP]
>UniRef100_Q2H6G6 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H6G6_CHAGB
          Length = 160

 Score =  131 bits (330), Expect = 3e-29
 Identities = 72/138 (52%), Positives = 92/138 (66%), Gaps = 13/138 (9%)
 Frame = +3

Query: 78  EDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLD-----------AEPIETEDKE-ADQPV 221
           ED D  YE EP   E ++ A   + + +N D D           A   +  DK   D+ +
Sbjct: 22  EDPDEYYEPEPEPAEEDDAARAPELEGENQDADHVVASGDPNAAANHGKGNDKSHKDKKI 81

Query: 222 ERPRRTSK-YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 398
              +RT+  +MTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP  +
Sbjct: 82  PNDQRTTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIV 141

Query: 399 RRYLPDGSYEDWGVDELI 452
           RRYLPDG YEDW  +EL+
Sbjct: 142 RRYLPDGYYEDWSCEELL 159

[96][TOP]
>UniRef100_Q5KBQ4 DNA-directed RNA polymerases I, II, and III polypeptide, putative
           n=1 Tax=Filobasidiella neoformans RepID=Q5KBQ4_CRYNE
          Length = 148

 Score =  131 bits (329), Expect = 4e-29
 Identities = 80/150 (53%), Positives = 102/150 (68%), Gaps = 16/150 (10%)
 Frame = +3

Query: 60  MADD---DYEDIDMG-YEEEPPEP-----EIEEGAEEEDPDKQNDDLDAEPIETEDKEAD 212
           M+DD   D  D + G YE++  +P     E EE AEEE  + + D+     IE+   E D
Sbjct: 1   MSDDERMDTGDFEGGDYEQDYVDPDTLNYENEENAEEEAANGEVDETMI--IESGAPEGD 58

Query: 213 QP----VERP---RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 371
           +P      +P   R T+ YMTKYERAR+LGTRALQISMNAPV+V +EGE+DPLEIA+KEL
Sbjct: 59  RPRTGKAAKPNEIRVTTPYMTKYERARVLGTRALQISMNAPVLVPVEGESDPLEIAIKEL 118

Query: 372 RERKIPFTIRRYLPDGSYEDWGVDELIVED 461
             +KIP  IRRYLPD S+EDW V+ELIV++
Sbjct: 119 AAKKIPLVIRRYLPDNSFEDWKVEELIVQE 148

[97][TOP]
>UniRef100_B4M5E9 GJ11106 n=1 Tax=Drosophila virilis RepID=B4M5E9_DROVI
          Length = 131

 Score =  130 bits (328), Expect = 5e-29
 Identities = 69/136 (50%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR- 236
           M D +Y++ D+G ++     +++E  +E+    Q +++D   I          V + +R 
Sbjct: 1   MDDGEYDNDDVGGDDFD---DVDEDVDEDIA--QEEEVDNIEIIAPGGAGGGGVPKSKRI 55

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T+KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRR+LPD
Sbjct: 56  TTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLPD 115

Query: 417 GSYEDWGVDELIVEDS 464
            SYEDW +DELI+ D+
Sbjct: 116 HSYEDWSIDELIMVDN 131

[98][TOP]
>UniRef100_Q5CXV6 DNA-directed RNA polymerase subunit n=2 Tax=Cryptosporidium
           RepID=Q5CXV6_CRYPV
          Length = 129

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/130 (52%), Positives = 92/130 (70%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKY 248
           +DY++    Y+EE    E E   EE + D+  + L  + + +  +   +P E PR T+ Y
Sbjct: 2   NDYDESGGNYDEEEEYMEEELIEEEIEGDENIEILTEDAVHS--RYDGKPNEGPRITTPY 59

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 428
           MTK+E+ARI+GTRALQISMNAPV + L+GETDPL IA KEL  +KIPF IRRYLP+G+YE
Sbjct: 60  MTKFEKARIIGTRALQISMNAPVAIPLDGETDPLLIAEKELYTKKIPFVIRRYLPNGNYE 119

Query: 429 DWGVDELIVE 458
           DW +DELI++
Sbjct: 120 DWKIDELILD 129

[99][TOP]
>UniRef100_C5L3X6 DNA-directed RNA polymerase subunit, putative n=1 Tax=Perkinsus
           marinus ATCC 50983 RepID=C5L3X6_9ALVE
          Length = 138

 Score =  130 bits (326), Expect = 9e-29
 Identities = 68/125 (54%), Positives = 89/125 (71%), Gaps = 3/125 (2%)
 Frame = +3

Query: 87  DMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEAD---QPVERPRRTSKYMTK 257
           D+  +E+   P++   A+EE      D + +  + T+ K+ D   +  E PRRTS YMTK
Sbjct: 13  DLEVDEDDLMPDLN--ADEEVAGGSGDVITSGRVPTQPKDDDFVAREAEGPRRTSPYMTK 70

Query: 258 YERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWG 437
           YERARI+GTRALQISMNAPVMV+ EGETDP+ IA KEL  + IPF +RR+LPDG+YEDW 
Sbjct: 71  YERARIIGTRALQISMNAPVMVDTEGETDPMAIAEKELVAKVIPFIVRRFLPDGTYEDWK 130

Query: 438 VDELI 452
           V+EL+
Sbjct: 131 VEELM 135

[100][TOP]
>UniRef100_B6KD21 RNA polymerase II subunit RPB6, putative n=3 Tax=Toxoplasma gondii
           RepID=B6KD21_TOXGO
          Length = 146

 Score =  130 bits (326), Expect = 9e-29
 Identities = 68/130 (52%), Positives = 90/130 (69%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKY 248
           DD+ + D G +E   + ++E  A     + ++D LD          A +P E PR TS Y
Sbjct: 19  DDFGE-DFGDDELIDDFDVERAAAAASHEPESDILDPSDPRAARPHA-RPSEGPRITSPY 76

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 428
           +TK+E+AR++GTRALQISMNAP+ + L+GETDPL IA KEL ++ IPFTIRRYLPDGSYE
Sbjct: 77  ITKFEKARVIGTRALQISMNAPITIPLDGETDPLIIAEKELYQKTIPFTIRRYLPDGSYE 136

Query: 429 DWGVDELIVE 458
           DW + ELIV+
Sbjct: 137 DWKIQELIVD 146

[101][TOP]
>UniRef100_Q6FSJ7 Strain CBS138 chromosome G complete sequence n=1 Tax=Candida
           glabrata RepID=Q6FSJ7_CANGA
          Length = 159

 Score =  130 bits (326), Expect = 9e-29
 Identities = 71/145 (48%), Positives = 93/145 (64%), Gaps = 15/145 (10%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDL------------DAEPIETEDKEAD 212
           +++ED D+ +  +  + E     E    ++  D+             D + +ET  ++  
Sbjct: 13  ENFEDFDVEHFSDEDQYEDNVKTEANGGEQMKDEEGRTIVTGGMGPEDYKNVETHRRKTL 72

Query: 213 QPVERP---RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 383
           +    P   R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+K
Sbjct: 73  KEKAIPKEDRTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKK 132

Query: 384 IPFTIRRYLPDGSYEDWGVDELIVE 458
           IP  IRRYLPDGS+EDW V+EL+V+
Sbjct: 133 IPLVIRRYLPDGSFEDWSVEELVVD 157

[102][TOP]
>UniRef100_B6K6D2 DNA-directed RNA polymerase I, II and III subunit Rpb6 n=1
           Tax=Schizosaccharomyces japonicus yFS275
           RepID=B6K6D2_SCHJY
          Length = 145

 Score =  130 bits (326), Expect = 9e-29
 Identities = 74/139 (53%), Positives = 84/139 (60%), Gaps = 10/139 (7%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDD----------LDAEPIETEDKEADQ 215
           DD Y       EEE  + E+ E A     D  N              A    +    A  
Sbjct: 7   DDAYGAEGNYMEEEVEDVEVTETAAAGTEDAANRSNVVVSGDVAAAAAAAASSSGTSAKA 66

Query: 216 PVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 395
                RRT+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IAMKEL ++KIP  
Sbjct: 67  ITGADRRTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLL 126

Query: 396 IRRYLPDGSYEDWGVDELI 452
           +RRYLPDGSYEDW V ELI
Sbjct: 127 VRRYLPDGSYEDWSVSELI 145

[103][TOP]
>UniRef100_B6H9E7 Pc16g10310 protein n=1 Tax=Penicillium chrysogenum Wisconsin
           54-1255 RepID=B6H9E7_PENCW
          Length = 153

 Score =  130 bits (326), Expect = 9e-29
 Identities = 74/148 (50%), Positives = 96/148 (64%), Gaps = 19/148 (12%)
 Frame = +3

Query: 66  DDDYE---DIDMGYEEEPPEPEIEEGAEEED---------PDKQNDDLDAEP-------I 188
           DDD E   D + G +    EPE +EG E ED          + +N  +  +P       +
Sbjct: 7   DDDVEETYDYEPGEDVFDEEPEEQEGLEGEDGVEGEEYPTTNGENVVVSGDPNAGYAGKV 66

Query: 189 ETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE 368
             + +E   P ++ R T+ Y+TKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IAMKE
Sbjct: 67  MEQSREKKVPNDQ-RTTTPYLTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMKE 125

Query: 369 LRERKIPFTIRRYLPDGSYEDWGVDELI 452
           L ++KIP  IRRYLPDG YEDW  +EL+
Sbjct: 126 LNQKKIPLIIRRYLPDGWYEDWTCEELL 153

[104][TOP]
>UniRef100_Q4P6H4 Putative uncharacterized protein n=1 Tax=Ustilago maydis
           RepID=Q4P6H4_USTMA
          Length = 215

 Score =  129 bits (325), Expect = 1e-28
 Identities = 71/131 (54%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
 Frame = +3

Query: 75  YEDIDMGYE-EEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYM 251
           Y+D +  Y+ ++  E + ++GA+       +     +P  +   +A+      R T+ YM
Sbjct: 13  YDDEEPVYDGDDLGEEQFDDGADGAANGIVHSSAGGDPSTSMAGQANAE----RITTPYM 68

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYED 431
           TKYERARILGTRALQISMNAPV+V  EGETDPLEIAMKEL  +KIP  +RRYLPDGSYED
Sbjct: 69  TKYERARILGTRALQISMNAPVLVPTEGETDPLEIAMKELAAKKIPLVVRRYLPDGSYED 128

Query: 432 WGVDELIVEDS 464
           W V ELIV DS
Sbjct: 129 WTVSELIVSDS 139

[105][TOP]
>UniRef100_P36595 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Schizosaccharomyces pombe RepID=RPAB2_SCHPO
          Length = 142

 Score =  129 bits (324), Expect = 2e-28
 Identities = 74/140 (52%), Positives = 92/140 (65%), Gaps = 13/140 (9%)
 Frame = +3

Query: 72  DYEDID-MGYEEEPPEPEIEE--GAEEEDPDKQNDDLDAEP---IETEDKEADQPVE--- 224
           DYE+ +  G +    E E++E    +E    +Q      EP   + TED  + +  +   
Sbjct: 3   DYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGK 62

Query: 225 ----RPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 392
                 R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IAMKEL ++KIP 
Sbjct: 63  AVAKEDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPL 122

Query: 393 TIRRYLPDGSYEDWGVDELI 452
            +RRYLPDGSYEDW V ELI
Sbjct: 123 LVRRYLPDGSYEDWSVAELI 142

[106][TOP]
>UniRef100_B6AF51 DNA-directed RNA polymerases I, II, and III subunit RPABC2,
           putative n=1 Tax=Cryptosporidium muris RN66
           RepID=B6AF51_9CRYT
          Length = 132

 Score =  129 bits (323), Expect = 2e-28
 Identities = 72/130 (55%), Positives = 91/130 (70%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKY 248
           +D ED D   EE   E EIE  A +E+ +   DD+        +K   +P E PR T+ Y
Sbjct: 12  EDEED-DFVDEEYLEEDEIE--ASDENVEIMTDDV------IHNKYEGKPCEGPRITTPY 62

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 428
           MTK+E+ARI+GTRALQISMNAPV + L+GETDPL IA KEL  +KIPF IRRYLP+G+YE
Sbjct: 63  MTKFEKARIIGTRALQISMNAPVAIPLDGETDPLIIAEKELYAKKIPFIIRRYLPNGNYE 122

Query: 429 DWGVDELIVE 458
           DW +DELI++
Sbjct: 123 DWKIDELILD 132

[107][TOP]
>UniRef100_Q758N4 AEL279Cp n=1 Tax=Eremothecium gossypii RepID=Q758N4_ASHGO
          Length = 154

 Score =  129 bits (323), Expect = 2e-28
 Identities = 65/86 (75%), Positives = 72/86 (83%)
 Frame = +3

Query: 201 KEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRER 380
           KE   P E  R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDP+ IAMKEL E+
Sbjct: 69  KEKAIPKEE-RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPMRIAMKELAEK 127

Query: 381 KIPFTIRRYLPDGSYEDWGVDELIVE 458
           KIP  IRRYLPDGS+EDW V+ELIV+
Sbjct: 128 KIPLVIRRYLPDGSFEDWSVEELIVD 153

[108][TOP]
>UniRef100_Q6CWK0 KLLA0B03476p n=1 Tax=Kluyveromyces lactis RepID=Q6CWK0_KLULA
          Length = 158

 Score =  129 bits (323), Expect = 2e-28
 Identities = 62/76 (81%), Positives = 68/76 (89%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP  IRRYL
Sbjct: 82  RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 141

Query: 411 PDGSYEDWGVDELIVE 458
           PDGS+EDW V+ELIV+
Sbjct: 142 PDGSFEDWSVEELIVD 157

[109][TOP]
>UniRef100_B4NB83 GK11847 n=1 Tax=Drosophila willistoni RepID=B4NB83_DROWI
          Length = 132

 Score =  128 bits (322), Expect = 3e-28
 Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 24/131 (18%)
 Frame = +3

Query: 144 EDPDKQNDDLDAEPIETEDKEADQPVERP------------------------RRTSKYM 251
           ++ D  NDD+  +  +  D++ D+ + +                         R T+KYM
Sbjct: 2   DEADFDNDDVGGDDFDDVDEDVDEDINQEEEVDNIEIITPGGTAPGGGVPKSKRITTKYM 61

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYED 431
           TKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+++KIP  IRR+LPD SYED
Sbjct: 62  TKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRFLPDHSYED 121

Query: 432 WGVDELIVEDS 464
           W +DELI+ D+
Sbjct: 122 WSIDELIMVDN 132

[110][TOP]
>UniRef100_C9SV68 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
           VaMs.102 RepID=C9SV68_9PEZI
          Length = 149

 Score =  128 bits (321), Expect = 4e-28
 Identities = 73/136 (53%), Positives = 95/136 (69%), Gaps = 6/136 (4%)
 Frame = +3

Query: 63  ADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQN-DDLDAEPIETED-----KEADQPVE 224
           A DD E  D  Y+E P E E ++  E+ + +  N  D  A    T++     K+   P +
Sbjct: 16  AFDDDEAFD--YDEFPEEDEKKDDEEDGEDNVINAGDPSAAAAATKNSTLSHKDMKIPDD 73

Query: 225 RPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           + R T+ YMTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KELRE+KIP  +RR
Sbjct: 74  Q-RTTTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELREKKIPLIVRR 132

Query: 405 YLPDGSYEDWGVDELI 452
           Y+PDG YEDW  +EL+
Sbjct: 133 YMPDGYYEDWTCEELL 148

[111][TOP]
>UniRef100_C5P0V3 DNA-directed RNA polymerase subunit, putative n=1 Tax=Coccidioides
           posadasii C735 delta SOWgp RepID=C5P0V3_COCP7
          Length = 158

 Score =  128 bits (321), Expect = 4e-28
 Identities = 71/142 (50%), Positives = 92/142 (64%), Gaps = 15/142 (10%)
 Frame = +3

Query: 72  DYEDIDMGY-EEEP-----PEPEIEEGA--------EEEDPDKQNDDLDAEPIETEDKEA 209
           DYE  +  Y + EP     PE E EEGA        +   P    D   A   +   ++ 
Sbjct: 17  DYEPPEYDYIDNEPEDYVSPEQEAEEGAYAVLNGDGQPVTPGANGDSAAASKSKVMLQQR 76

Query: 210 DQPVERPRRTSK-YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 386
           ++ V   +RT+  YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+IA+KEL ++KI
Sbjct: 77  EKKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKI 136

Query: 387 PFTIRRYLPDGSYEDWGVDELI 452
           P  +RRYLPDG YEDW  +EL+
Sbjct: 137 PLIVRRYLPDGWYEDWTCEELL 158

[112][TOP]
>UniRef100_C5DUS0 ZYRO0D00880p n=1 Tax=Zygosaccharomyces rouxii CBS 732
           RepID=C5DUS0_ZYGRC
          Length = 165

 Score =  128 bits (321), Expect = 4e-28
 Identities = 61/76 (80%), Positives = 68/76 (89%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T+ YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL E+KIP  IRRY+
Sbjct: 89  RTTTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYM 148

Query: 411 PDGSYEDWGVDELIVE 458
           PDGS+EDW V+ELIV+
Sbjct: 149 PDGSFEDWSVEELIVD 164

[113][TOP]
>UniRef100_A7UVS4 DNA-directed RNA polymerases I n=1 Tax=Neurospora crassa
           RepID=A7UVS4_NEUCR
          Length = 160

 Score =  128 bits (321), Expect = 4e-28
 Identities = 72/151 (47%), Positives = 92/151 (60%), Gaps = 22/151 (14%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPD---KQNDDLDAEPIET-------------- 194
           DDD E ID    +E P+   E   E  D D   +  D++D    +               
Sbjct: 9   DDDREPIDEPAFDEDPDEYYEPEPEPADDDVAGRPGDEVDEAENDNNIVTSGDPNAAANA 68

Query: 195 ----EDKEADQPVERPRR-TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 359
               E    D+ +   +R T+ YMTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA
Sbjct: 69  GKGNEKSHKDKKIPNDQRSTTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIA 128

Query: 360 MKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +KELRE+KIP  +RRY+PDG YEDW  +EL+
Sbjct: 129 IKELREKKIPLIVRRYMPDGYYEDWTCEELL 159

[114][TOP]
>UniRef100_UPI000187EA0E hypothetical protein MPER_09004 n=1 Tax=Moniliophthora perniciosa
           FA553 RepID=UPI000187EA0E
          Length = 169

 Score =  127 bits (320), Expect = 5e-28
 Identities = 72/145 (49%), Positives = 93/145 (64%), Gaps = 16/145 (11%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPEPEIEEGAE--EEDPDKQNDDLDAEPIETEDKEADQPVERP----- 230
           D + ID GY+    + E ++G E  E+  D Q + ++    + E    ++P E P     
Sbjct: 25  DEQFIDEGYDLLARDAEGQQGGEGVEQAGDPQINGVNGVDHDQEMANGEEPQEPPAQASI 84

Query: 231 ---------RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK 383
                    R T+ Y+TKYERARILGTRALQISMNAPV+V L+GETD L+IA+KEL +RK
Sbjct: 85  LGERQPNKERITTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRK 144

Query: 384 IPFTIRRYLPDGSYEDWGVDELIVE 458
           IP  IRRYLPDGS+EDW V ELI +
Sbjct: 145 IPLIIRRYLPDGSFEDWSVSELITD 169

[115][TOP]
>UniRef100_A7SYA5 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SYA5_NEMVE
          Length = 71

 Score =  127 bits (320), Expect = 5e-28
 Identities = 61/71 (85%), Positives = 66/71 (92%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 428
           MTKYERAR+LGTRALQISM APVMVELEGETDPL+IAMKEL+ RKIP  IRRYLPDGS+E
Sbjct: 1   MTKYERARVLGTRALQISMGAPVMVELEGETDPLQIAMKELKARKIPIIIRRYLPDGSHE 60

Query: 429 DWGVDELIVED 461
           DWG+DELIV D
Sbjct: 61  DWGIDELIVTD 71

[116][TOP]
>UniRef100_Q4WJQ5 DNA-directed RNA polymerase I, II, and III subunit Rpb6 n=1
           Tax=Aspergillus fumigatus RepID=Q4WJQ5_ASPFU
          Length = 161

 Score =  127 bits (320), Expect = 5e-28
 Identities = 73/149 (48%), Positives = 92/149 (61%), Gaps = 22/149 (14%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPE----PEIEEGAEEEDPDKQNDD------------LDAEPIE---- 191
           DYE  +  ++E  PE    PE  EGAE    D   DD            +  +P      
Sbjct: 14  DYEPAEEVFDENEPEDFINPEDLEGAEG-GADGYGDDHYTPAVNGDRIVVSGDPSAGYSG 72

Query: 192 --TEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMK 365
              E   A +     R+T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+K
Sbjct: 73  KVVEQARAKKIPNEERKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIK 132

Query: 366 ELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           EL ++KIP  +RRYLPDG+YEDW  +EL+
Sbjct: 133 ELNQKKIPLIVRRYLPDGTYEDWTCEELL 161

[117][TOP]
>UniRef100_B8MH46 DNA-directed RNA polymerase I, II, and III subunit Rpb6 n=1
           Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MH46_TALSN
          Length = 162

 Score =  127 bits (320), Expect = 5e-28
 Identities = 75/164 (45%), Positives = 94/164 (57%), Gaps = 37/164 (22%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEA-------------- 209
           D+E  D GY+ +  EPE ++   E       D L+ E +E E  EA              
Sbjct: 6   DHEAEDTGYDYDGGEPEYDDNEPE-------DFLEPEDVEPEGDEAVHGAEDVYQDAVNG 58

Query: 210 ------------------DQPVERP-----RRTSKYMTKYERARILGTRALQISMNAPVM 320
                             +QP E+      R T+ YMTKYERAR+LGTRALQISMNAPV+
Sbjct: 59  ERTIISGDPNAGGGRGVMEQPREKKIPNDQRSTTPYMTKYERARVLGTRALQISMNAPVL 118

Query: 321 VELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           V+LEGETDPL+IA+KEL ++KIP  IRRYLPDG YEDW  +EL+
Sbjct: 119 VDLEGETDPLQIAIKELNQKKIPLIIRRYLPDGYYEDWTCEELL 162

[118][TOP]
>UniRef100_B0XP09 DNA-directed RNA polymerase I, II, and III subunit Rpb6 n=1
           Tax=Aspergillus fumigatus A1163 RepID=B0XP09_ASPFC
          Length = 161

 Score =  127 bits (320), Expect = 5e-28
 Identities = 73/149 (48%), Positives = 92/149 (61%), Gaps = 22/149 (14%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPE----PEIEEGAEEEDPDKQNDD------------LDAEPIE---- 191
           DYE  +  ++E  PE    PE  EGAE    D   DD            +  +P      
Sbjct: 14  DYEPAEEVFDENEPEDFINPEDLEGAEG-GADGYGDDHYTPAVNGDRIVVSGDPSAGYLG 72

Query: 192 --TEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMK 365
              E   A +     R+T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+K
Sbjct: 73  KVVEQARAKKIPNEERKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIK 132

Query: 366 ELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           EL ++KIP  +RRYLPDG+YEDW  +EL+
Sbjct: 133 ELNQKKIPLIVRRYLPDGTYEDWTCEELL 161

[119][TOP]
>UniRef100_A1CRE9 DNA-directed RNA polymerase I, II, and III subunit Rpb6 n=1
           Tax=Aspergillus clavatus RepID=A1CRE9_ASPCL
          Length = 161

 Score =  127 bits (319), Expect = 6e-28
 Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 22/149 (14%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPE----PEIEEGAEEEDPDKQNDDLDAEPIE---------------- 191
           DYE  +  +++  PE    PE  E AE    D   DD  A  +                 
Sbjct: 14  DYEPAEEVFDDHEPEDFINPEDIEAAEG-GADGYGDDSYAPAVNGDRVVVSGDPSAGYSG 72

Query: 192 --TEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMK 365
              E   A +     R+T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IAMK
Sbjct: 73  KVVEQARAKKIPNEERKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAMK 132

Query: 366 ELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           EL ++KIP  +RRYLPDG+YEDW  +EL+
Sbjct: 133 ELNQKKIPLIVRRYLPDGTYEDWTCEELL 161

[120][TOP]
>UniRef100_A1D4B1 DNA-directed RNA polymerase I, II, and III subunit Rpb6 n=1
           Tax=Neosartorya fischeri NRRL 181 RepID=A1D4B1_NEOFI
          Length = 161

 Score =  127 bits (318), Expect = 8e-28
 Identities = 73/149 (48%), Positives = 92/149 (61%), Gaps = 22/149 (14%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPE----PEIEEGAEEEDPDKQNDD------------LDAEPIE---- 191
           DYE  +  ++E  PE    PE  EGAE    D   DD            +  +P      
Sbjct: 14  DYEPAEEVFDENEPEDFINPEDLEGAEG-GADGYADDHYTPAVNGDRIVVSGDPSAGYSG 72

Query: 192 --TEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMK 365
              E   A +     R+T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+K
Sbjct: 73  KVVEQARAKKIPNEERKTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIK 132

Query: 366 ELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           EL ++KIP  +RRYLPDG+YEDW  +EL+
Sbjct: 133 ELNQKKIPLIVRRYLPDGTYEDWTCEELL 161

[121][TOP]
>UniRef100_Q5D946 SJCHGC05009 protein n=1 Tax=Schistosoma japonicum
           RepID=Q5D946_SCHJA
          Length = 135

 Score =  126 bits (317), Expect = 1e-27
 Identities = 68/133 (51%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQND-DLDAEPIETEDKEADQPVERPRR-TS 242
           D+Y  ID    +E P  E+ +   +  PD       D  P  +  +    PVE+ +R T+
Sbjct: 3   DEYGGIDDFESDEEPLDEVPDDDLDTKPDGVTYITTDEVPRLSSGQSLAAPVEKSKRITT 62

Query: 243 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 422
            Y+TKYERAR+LG RALQ+SM+APVMVEL+GE DPL+IA KELR  KIP  IRR+LPDGS
Sbjct: 63  PYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGS 122

Query: 423 YEDWGVDELIVED 461
           +EDW +DELI+ +
Sbjct: 123 FEDWSLDELILTE 135

[122][TOP]
>UniRef100_B3S9T0 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
           RepID=B3S9T0_TRIAD
          Length = 95

 Score =  126 bits (316), Expect = 1e-27
 Identities = 60/77 (77%), Positives = 67/77 (87%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T  YMTKYERARILGTRALQISMNAPVMVELEGETDPL+IA+KEL+  KIP  +RR+L
Sbjct: 18  RTTQPYMTKYERARILGTRALQISMNAPVMVELEGETDPLQIALKELKANKIPMIVRRFL 77

Query: 411 PDGSYEDWGVDELIVED 461
           PDGSYEDW  +ELIV +
Sbjct: 78  PDGSYEDWSCNELIVSE 94

[123][TOP]
>UniRef100_B8N1E2 DNA-directed RNA polymerase I, II, and III subunit Rpb6 n=1
           Tax=Aspergillus flavus NRRL3357 RepID=B8N1E2_ASPFN
          Length = 159

 Score =  126 bits (316), Expect = 1e-27
 Identities = 74/151 (49%), Positives = 93/151 (61%), Gaps = 22/151 (14%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPE-------IE--EGAEEEDPDKQNDDLDAEPIETED------ 200
           D+D  D D G + +  EPE       IE  EGAE    D     ++ + +          
Sbjct: 9   DEDNYDFDAGQDYDDNEPEDFLNPEDIEGVEGAEAYGEDHYTPAVNGDRVVVSGDPSAGY 68

Query: 201 --KEADQPVERP-----RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIA 359
             K  +Q  ER      R T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA
Sbjct: 69  SGKVMEQVRERKVPNDQRTTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIA 128

Query: 360 MKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +KEL ++KIP  +RRYLPDG YEDW  +EL+
Sbjct: 129 IKELNQKKIPLIVRRYLPDGWYEDWTCEELL 159

[124][TOP]
>UniRef100_A4QSN6 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
           RepID=A4QSN6_MAGGR
          Length = 151

 Score =  125 bits (315), Expect = 2e-27
 Identities = 72/136 (52%), Positives = 91/136 (66%), Gaps = 16/136 (11%)
 Frame = +3

Query: 93  GYEEEPP--EPEIEEGAEEEDP-DKQNDDLDAEPIETEDKEA------------DQPVER 227
           GY EE    + E EE  +EE P D   D+ DA  + + D  A            D+ +  
Sbjct: 15  GYHEEAAFDDVEPEEIFDEEVPLDDDEDNEDANVVVSGDPNAAARATGQKLSHKDKKIPN 74

Query: 228 PRRTSK-YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
            +RT+  +MTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KEL E+KIP  IRR
Sbjct: 75  DKRTTTPFMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKELAEKKIPLIIRR 134

Query: 405 YLPDGSYEDWGVDELI 452
           Y+PDG YEDW  +EL+
Sbjct: 135 YMPDGYYEDWTCEELL 150

[125][TOP]
>UniRef100_UPI00005A20F9 PREDICTED: similar to DNA directed RNA polymerase II polypeptide F
           isoform 2 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A20F9
          Length = 71

 Score =  125 bits (314), Expect = 2e-27
 Identities = 61/71 (85%), Positives = 65/71 (91%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 428
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 1   MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 60

Query: 429 DWGVDELIVED 461
           DWGVDELI+ D
Sbjct: 61  DWGVDELIITD 71

[126][TOP]
>UniRef100_C4QH33 DNA-directed rna polymerase subunit rpb6, putative n=1
           Tax=Schistosoma mansoni RepID=C4QH33_SCHMA
          Length = 134

 Score =  124 bits (311), Expect = 5e-27
 Identities = 66/132 (50%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRR-TSK 245
           D+Y   D    +E P  E+ E   +  P+        E      +    PVE+ +R T+ 
Sbjct: 3   DEYGGADDFESDEEPLDEVPEEDLDTKPEGVTYITADETPRLSGQNMAAPVEKSKRVTTP 62

Query: 246 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 425
           Y+TKYERAR+LG RALQ+SM+APVMVEL+GE DPL+IA KELR  KIP  IRR+LPDGS+
Sbjct: 63  YLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDGSF 122

Query: 426 EDWGVDELIVED 461
           EDW +DELI+ +
Sbjct: 123 EDWSLDELILTE 134

[127][TOP]
>UniRef100_B4QWV0 GD19782 n=1 Tax=Drosophila simulans RepID=B4QWV0_DROSI
          Length = 131

 Score =  124 bits (310), Expect = 7e-27
 Identities = 67/135 (49%), Positives = 92/135 (68%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRT 239
           M D DY++ D+G ++     +++E  +E+   ++  D + E I           +  R T
Sbjct: 1   MDDADYDNDDVGGDDFD---DVDEDVDEDINQEEEAD-NIEIIAPGGAGGGGVPKSKRIT 56

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +KYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+ +KIP   R  LPD 
Sbjct: 57  TKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKPKKIPLIFRPPLPDH 116

Query: 420 SYEDWGVDELIVEDS 464
           SYEDW +DELI+ D+
Sbjct: 117 SYEDWSIDELIMVDN 131

[128][TOP]
>UniRef100_Q0V6W2 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0V6W2_PHANO
          Length = 161

 Score =  123 bits (308), Expect = 1e-26
 Identities = 71/154 (46%), Positives = 95/154 (61%), Gaps = 26/154 (16%)
 Frame = +3

Query: 69  DDYEDIDMGYEE------EPPEPEIEE-------GAEEEDPDKQNDDL----DAEP---- 185
           DDY   D GY++      E  EP++ +       G +++D   Q D++    DA      
Sbjct: 7   DDYGGGDAGYDDGAVEFDEEMEPDVFDDNDDDAAGGQDQDAQDQEDNIVVSGDASAGAAA 66

Query: 186 ----IETEDKEADQPVERPRRTSK-YMTKYERARILGTRALQISMNAPVMVELEGETDPL 350
                 T + E D+ V    RT+  YMTKYERAR+LGTRALQIS NAPV++++EG TDPL
Sbjct: 67  KDKVKNTVENEKDKKVAPENRTTTPYMTKYERARVLGTRALQISGNAPVLIDVEGMTDPL 126

Query: 351 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +IA KEL+E+KIP  +RRYLPDG YEDW  +EL+
Sbjct: 127 QIAAKELQEKKIPLVVRRYLPDGFYEDWTCEELL 160

[129][TOP]
>UniRef100_C5FTJ3 DNA-directed RNA polymerase I n=1 Tax=Microsporum canis CBS 113480
           RepID=C5FTJ3_NANOT
          Length = 161

 Score =  122 bits (307), Expect = 1e-26
 Identities = 68/140 (48%), Positives = 91/140 (65%), Gaps = 10/140 (7%)
 Frame = +3

Query: 63  ADDDYEDI---DMGYEEEPPEPE--IEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVER 227
           A+D ++D    D   E++  E    +    +    + QN D +A   + + K   Q  E+
Sbjct: 22  AEDFFDDTVVDDFAVEDQQEEGYAILNGDGQPATTNGQNSDPNASSGQGQGKTILQQREK 81

Query: 228 P-----RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 392
                 R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+IA+KEL ++KIP 
Sbjct: 82  KVANDQRTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQIALKELNQKKIPL 141

Query: 393 TIRRYLPDGSYEDWGVDELI 452
            IRRYLPDG YEDW  +EL+
Sbjct: 142 IIRRYLPDGWYEDWTCEELL 161

[130][TOP]
>UniRef100_Q84Q45 Putative DNA-directed RNA polymerase Iia n=1 Tax=Oryza sativa
           Japonica Group RepID=Q84Q45_ORYSJ
          Length = 286

 Score =  122 bits (306), Expect = 2e-26
 Identities = 69/131 (52%), Positives = 79/131 (60%), Gaps = 28/131 (21%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIE----------------------------EGAEEEDPD 155
           MA+DDY D+DMGYE+EPPEPEIE                            EGAEEE P+
Sbjct: 1   MAEDDYNDMDMGYEDEPPEPEIEVQSCCFVIYFWTLLYQEELCGLFTFSELEGAEEE-PE 59

Query: 156 KQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEG 335
             N+D   + +  ED    +   RP +TSKYMTKYERARIL TRALQISMNAPVMVELEG
Sbjct: 60  NNNEDAVDDVVGAEDDREQEKTARPWKTSKYMTKYERARILSTRALQISMNAPVMVELEG 119

Query: 336 ETDPLEIAMKE 368
            T PLE+   E
Sbjct: 120 GTYPLEVEALE 130

[131][TOP]
>UniRef100_C5GCW3 DNA-directed RNA polymerase I n=2 Tax=Ajellomyces dermatitidis
           RepID=C5GCW3_AJEDR
          Length = 162

 Score =  122 bits (306), Expect = 2e-26
 Identities = 66/152 (43%), Positives = 92/152 (60%), Gaps = 30/152 (19%)
 Frame = +3

Query: 87  DMGYEEEPPEPEIEEGAEEEDPDKQNDDL---------DAEPIET--------------- 194
           D G++ EPPE E  +   E+  + +  +          D +P++                
Sbjct: 12  DAGFDYEPPEYEYIDNEPEDFVEPEQTEHAEGYAIVNGDGQPVQNGEENIVSGDPNAGAS 71

Query: 195 ------EDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEI 356
                 + +E   P ++ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEGETDPL+I
Sbjct: 72  KGKVMLQQREKKVPNDQ-RTTTPYMTKYERARVLGTRALQISMNAPILVDLEGETDPLQI 130

Query: 357 AMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           A+KEL ++KIP  +RRYLPDG YEDW  +EL+
Sbjct: 131 ALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 162

[132][TOP]
>UniRef100_C1GQL4 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb01 RepID=C1GQL4_PARBA
          Length = 165

 Score =  122 bits (306), Expect = 2e-26
 Identities = 60/110 (54%), Positives = 78/110 (70%)
 Frame = +3

Query: 123 IEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQIS 302
           I+ G E       N       +  + +E   P ++ R T+ YMTKYERAR+LGTRALQIS
Sbjct: 57  IQNGTENVASGDPNAGASKGKVMLQQREKKVPNDQ-RTTTPYMTKYERARVLGTRALQIS 115

Query: 303 MNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           MNAP++V+LEGETDPL+IA+KEL ++KIP  +RRYLPDG YEDW  +EL+
Sbjct: 116 MNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 165

[133][TOP]
>UniRef100_C1G9T6 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb18 RepID=C1G9T6_PARBD
          Length = 165

 Score =  122 bits (306), Expect = 2e-26
 Identities = 70/159 (44%), Positives = 90/159 (56%), Gaps = 32/159 (20%)
 Frame = +3

Query: 72  DYEDID-MGYEEEPPEPE-------------------------------IEEGAEEEDPD 155
           D+ED D  G++ EPPE E                               I  G E     
Sbjct: 8   DHEDHDDAGFDYEPPEYEYIDNEPEDYIEPEQAEQGDQGYAIVNGNGQHIHNGNENSASG 67

Query: 156 KQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEG 335
             N       +  + +E   P ++ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEG
Sbjct: 68  DPNAGASKGKVMLQQREKKVPNDQ-RTTTPYMTKYERARVLGTRALQISMNAPILVDLEG 126

Query: 336 ETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           ETDPL+IA+KEL ++KIP  +RRYLPDG YEDW  +EL+
Sbjct: 127 ETDPLQIALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 165

[134][TOP]
>UniRef100_C0S1F6 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb03 RepID=C0S1F6_PARBP
          Length = 165

 Score =  122 bits (305), Expect = 3e-26
 Identities = 70/159 (44%), Positives = 90/159 (56%), Gaps = 32/159 (20%)
 Frame = +3

Query: 72  DYEDID-MGYEEEPPEPE-------------------------------IEEGAEEEDPD 155
           D+ED D  G++ EPPE E                               I  G E     
Sbjct: 8   DHEDHDDAGFDYEPPEYEYIDNEPEDYIEPEQAEQGDQGYAIVNGNGQHIHNGNENAASG 67

Query: 156 KQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEG 335
             N       +  + +E   P ++ R T+ YMTKYERAR+LGTRALQISMNAP++V+LEG
Sbjct: 68  DPNAGASKGKVMLQQREKKVPNDQ-RTTTPYMTKYERARVLGTRALQISMNAPILVDLEG 126

Query: 336 ETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           ETDPL+IA+KEL ++KIP  +RRYLPDG YEDW  +EL+
Sbjct: 127 ETDPLQIALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 165

[135][TOP]
>UniRef100_A7EPQ8 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
           1980 UF-70 RepID=A7EPQ8_SCLS1
          Length = 165

 Score =  122 bits (305), Expect = 3e-26
 Identities = 67/162 (41%), Positives = 95/162 (58%), Gaps = 34/162 (20%)
 Frame = +3

Query: 69  DDYEDIDMGYE-----EEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEA-------- 209
           DD  D D G+      +EP EP+ +    E+  +    ++D   + T++ +         
Sbjct: 3   DDEGDYDGGFSPAYDADEPEEPDYDPEGIEDTNNVSTGEVDDVAVSTQNPDQLLTTGERG 62

Query: 210 --------------------DQPVERPRRTSK-YMTKYERARILGTRALQISMNAPVMVE 326
                               D+ + + +RT+  YMTKYERARILGTRALQISMNAP++V+
Sbjct: 63  VVTSGDLHAANRAKSNIAPKDKKIPKEQRTTTPYMTKYERARILGTRALQISMNAPILVD 122

Query: 327 LEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
            EGETDPL+IA+KELR++KIP  +RRY+PDG YEDW  +EL+
Sbjct: 123 QEGETDPLQIAIKELRDKKIPLIVRRYMPDGWYEDWTCEELL 164

[136][TOP]
>UniRef100_B2WBI5 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2WBI5_PYRTR
          Length = 163

 Score =  121 bits (304), Expect = 3e-26
 Identities = 67/148 (45%), Positives = 90/148 (60%), Gaps = 17/148 (11%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIE---------------- 191
           M DD   D D   E +  + E ++    EDPD  + + D   +                 
Sbjct: 16  MGDDHAIDFDEEAEPDLMDDEDDQPGGGEDPDNADPNDDNVVVSGDANAAAAAKEASKNT 75

Query: 192 -TEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE 368
            T +K+   P E+ R T+ YMTKYE+AR+LGTRALQIS NAPV++++EG TDPL+IA KE
Sbjct: 76  VTSEKDKRVPNEK-RTTTPYMTKYEKARVLGTRALQISGNAPVLIDVEGMTDPLQIAAKE 134

Query: 369 LRERKIPFTIRRYLPDGSYEDWGVDELI 452
           L+E+KIP  +RRYLPDG YEDW  +EL+
Sbjct: 135 LQEKKIPLVVRRYLPDGFYEDWTCEELL 162

[137][TOP]
>UniRef100_A6RVU8 DNA-directed RNA polymerases I, II, and III n=1 Tax=Botryotinia
           fuckeliana B05.10 RepID=A6RVU8_BOTFB
          Length = 163

 Score =  121 bits (303), Expect = 4e-26
 Identities = 67/160 (41%), Positives = 95/160 (59%), Gaps = 32/160 (20%)
 Frame = +3

Query: 69  DDYEDIDMGYE---EEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEA---------- 209
           DD E+ D G+    +E  EPE +    E+  +    ++D   + T++ +           
Sbjct: 3   DDEENYDGGFSPAYDEAEEPEYDPEGMEDINNVSTGEVDDVAVSTQNPDQLLTTGERGVV 62

Query: 210 ------------------DQPVERPRRTSK-YMTKYERARILGTRALQISMNAPVMVELE 332
                             D+ + + +RT+  YMTKYERARILGTRALQISMNAP++V+ E
Sbjct: 63  TSGDLHAANRAKSNIAPKDKKIPKEQRTTTPYMTKYERARILGTRALQISMNAPILVDQE 122

Query: 333 GETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           GETDPL+IA+KELR++KIP  +RRY+PDG YEDW  +EL+
Sbjct: 123 GETDPLQIAIKELRDKKIPLIVRRYMPDGWYEDWTCEELL 162

[138][TOP]
>UniRef100_A2Q8H6 Contig An01c0150, complete genome n=1 Tax=Aspergillus niger CBS
           513.88 RepID=A2Q8H6_ASPNC
          Length = 160

 Score =  120 bits (302), Expect = 6e-26
 Identities = 55/74 (74%), Positives = 67/74 (90%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R+T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGETDPL+IA+KEL ++KIP  +RRYL
Sbjct: 87  RQTTPYMTKYERARVLGTRALQISMNAPVLVDLEGETDPLQIAIKELNQKKIPLIVRRYL 146

Query: 411 PDGSYEDWGVDELI 452
           PDG YEDW  +EL+
Sbjct: 147 PDGWYEDWTCEELL 160

[139][TOP]
>UniRef100_Q4Q3B6 DNA-directed RNA polymerase subunit, putative n=1 Tax=Leishmania
           major RepID=Q4Q3B6_LEIMA
          Length = 159

 Score =  120 bits (301), Expect = 7e-26
 Identities = 69/141 (48%), Positives = 92/141 (65%), Gaps = 10/141 (7%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIE---EGAEEEDPD---KQNDDLDAEPIETEDKEADQPVE- 224
           +DD   +++G + +  +   +    GA+EED +   +  +D+ A  I + + +A +    
Sbjct: 7   EDDLLSLNLGDDRDEGDSGSDIRHSGADEEDEEGGEQLPEDVAANVILSGNAQAAKGARA 66

Query: 225 ---RPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 395
                R TS  MTKYERAR+LGTRALQISMNAPV V LEGETDPL IA+KELRER+ P  
Sbjct: 67  RGINERVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLI 126

Query: 396 IRRYLPDGSYEDWGVDELIVE 458
           IRR LPD +YEDW V EL+V+
Sbjct: 127 IRRVLPDNTYEDWSVSELLVD 147

[140][TOP]
>UniRef100_A4I9P6 DNA-directed RNA polymerase subunit, putative n=1 Tax=Leishmania
           infantum RepID=A4I9P6_LEIIN
          Length = 159

 Score =  120 bits (300), Expect = 1e-25
 Identities = 69/141 (48%), Positives = 92/141 (65%), Gaps = 10/141 (7%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIE---EGAEEEDPD---KQNDDLDAEPIETEDKEADQPVE- 224
           +DD   +++G + +  +   +    GA+EED +   +  +D+ A  I + + +A +    
Sbjct: 7   EDDLLSLNLGGDRDEGDSGSDIRHSGADEEDEEGGEQLPEDVAANIILSGNAQAAKGARA 66

Query: 225 ---RPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT 395
                R TS  MTKYERAR+LGTRALQISMNAPV V LEGETDPL IA+KELRER+ P  
Sbjct: 67  RGINERVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAVKELRERRTPLI 126

Query: 396 IRRYLPDGSYEDWGVDELIVE 458
           IRR LPD +YEDW V EL+V+
Sbjct: 127 IRRVLPDNTYEDWSVSELLVD 147

[141][TOP]
>UniRef100_A4HAK2 DNA-directed RNA polymerase subunit, putative n=1 Tax=Leishmania
           braziliensis RepID=A4HAK2_LEIBR
          Length = 159

 Score =  120 bits (300), Expect = 1e-25
 Identities = 72/142 (50%), Positives = 87/142 (61%), Gaps = 11/142 (7%)
 Frame = +3

Query: 66  DDDYEDIDMG--YEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETE---------DKEAD 212
           DDD   +++G   +E     +I   + +E+ D+  D L  E I T           K A 
Sbjct: 7   DDDVLSLNLGDDRDEVNSSSDIHHSSGDEEDDEGGDQLP-EDIATNVVLSGNAQAAKGAR 65

Query: 213 QPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPF 392
                 R TS  MTKYERAR+LGTRALQISMNAPV V LEGETDPL IA+KELRER+ P 
Sbjct: 66  ARGINERVTSAVMTKYERARVLGTRALQISMNAPVAVALEGETDPLTIAIKELRERRTPL 125

Query: 393 TIRRYLPDGSYEDWGVDELIVE 458
            IRR LPD +YEDW V EL+V+
Sbjct: 126 IIRRVLPDNTYEDWSVSELLVD 147

[142][TOP]
>UniRef100_A8Q970 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
           7966 RepID=A8Q970_MALGO
          Length = 146

 Score =  119 bits (298), Expect = 2e-25
 Identities = 67/135 (49%), Positives = 83/135 (61%), Gaps = 5/135 (3%)
 Frame = +3

Query: 72  DYEDIDMGYEE-EPPEPEIEEGAEEEDPDKQNDD----LDAEPIETEDKEADQPVERPRR 236
           DY D  + ++  E  EP  EE    +D D   D+      A+     + +        R 
Sbjct: 12  DYFDEGVDFDAAEMDEPLNEEAGAGDDEDHFGDNEVVHSSADGNIPMNMDTSGKANSERI 71

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 416
           T+ YMTKYE+ARILGTRALQISMNAPV+V  EGE DPL IA KEL  +KIP  +RRYLPD
Sbjct: 72  TTPYMTKYEKARILGTRALQISMNAPVLVPTEGEMDPLAIAQKELLAKKIPLLVRRYLPD 131

Query: 417 GSYEDWGVDELIVED 461
           G++EDW V ELI+ D
Sbjct: 132 GTFEDWSVSELIITD 146

[143][TOP]
>UniRef100_B0CRA1 Predicted protein (Fragment) n=1 Tax=Laccaria bicolor S238N-H82
           RepID=B0CRA1_LACBS
          Length = 86

 Score =  118 bits (296), Expect = 3e-25
 Identities = 57/76 (75%), Positives = 66/76 (86%)
 Frame = +3

Query: 225 RPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           + R T+ Y+TKYERARILGTRALQISMNAPV+V L+GETD L+IA+KEL +RKIP  IRR
Sbjct: 11  KDRVTTPYLTKYERARILGTRALQISMNAPVLVPLDGETDALQIAIKELSQRKIPLIIRR 70

Query: 405 YLPDGSYEDWGVDELI 452
           YLPDGS+EDW V ELI
Sbjct: 71  YLPDGSFEDWSVSELI 86

[144][TOP]
>UniRef100_B2AX93 Predicted CDS Pa_7_9740 n=1 Tax=Podospora anserina
           RepID=B2AX93_PODAN
          Length = 153

 Score =  117 bits (293), Expect = 6e-25
 Identities = 65/138 (47%), Positives = 87/138 (63%), Gaps = 29/138 (21%)
 Frame = +3

Query: 96  YEEEPPEPEIEEGAEEEDPDK-----QNDDLDAEPIE----------------------- 191
           + ++  +P  +E A EEDPD+     ++D+ D  P+                        
Sbjct: 4   FGDDDRDPIADEPAFEEDPDEYYEPVEDDEADNRPVGDDEDPNQVVNSGDPNAAANHGKG 63

Query: 192 TEDKEADQPVERP-RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKE 368
           TE    D+ +    R+T+ YMTKYE+ARILGTRALQISMNAPV+V+LEGETDPL+IA+KE
Sbjct: 64  TEKSHKDKKIPNDQRKTTPYMTKYEKARILGTRALQISMNAPVLVDLEGETDPLQIAIKE 123

Query: 369 LRERKIPFTIRRYLPDGS 422
           LRE+KIP  +RRY+PDGS
Sbjct: 124 LREKKIPLIVRRYMPDGS 141

[145][TOP]
>UniRef100_A8JD59 Subunit of DNA-directed RNA polymerase (Fragment) n=1
           Tax=Chlamydomonas reinhardtii RepID=A8JD59_CHLRE
          Length = 87

 Score =  116 bits (290), Expect = 1e-24
 Identities = 60/87 (68%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
 Frame = +3

Query: 159 QNDDLDAEPIETEDKEADQPV-ERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEG 335
           Q  + + E ++  D +A Q    R R T++YMTKYE+AR+LGTRALQISMNAPVMVEL G
Sbjct: 1   QEGEENIELLDHADGQAGQGGGPRQRITTRYMTKYEKARVLGTRALQISMNAPVMVELSG 60

Query: 336 ETDPLEIAMKELRERKIPFTIRRYLPD 416
           ETDPLEIAMKELRE+K+PFTIRRYLPD
Sbjct: 61  ETDPLEIAMKELREKKVPFTIRRYLPD 87

[146][TOP]
>UniRef100_UPI000023F027 hypothetical protein FG06683.1 n=1 Tax=Gibberella zeae PH-1
           RepID=UPI000023F027
          Length = 139

 Score =  115 bits (288), Expect = 2e-24
 Identities = 63/124 (50%), Positives = 80/124 (64%), Gaps = 6/124 (4%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPV------ER 227
           D  YED ++    +P   +  E  +E   D   +  D   I    K  D+ +      E 
Sbjct: 16  DAMYEDEEINDYYDPEPADDGENQQENQDDNIINSGDPSAIANAVKGGDRLLKDKKIPES 75

Query: 228 PRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRY 407
            R T+ YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IA+KE+RE+KIP  +RRY
Sbjct: 76  ERTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAIKEMREKKIPLIVRRY 135

Query: 408 LPDG 419
           +PDG
Sbjct: 136 MPDG 139

[147][TOP]
>UniRef100_B9G101 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9G101_ORYSJ
          Length = 230

 Score =  115 bits (287), Expect = 3e-24
 Identities = 69/139 (49%), Positives = 79/139 (56%), Gaps = 36/139 (25%)
 Frame = +3

Query: 60  MADDDYEDIDMG------------------------YEEEPPEPEIEE------------ 131
           MA+DDY D+DMG                        YE+EPPEPEIEE            
Sbjct: 1   MAEDDYNDMDMGCCQVCQQSGFIQNVRNYADFWVTRYEDEPPEPEIEEELCGLFTFSELE 60

Query: 132 GAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNA 311
           GAEEE P+  N+D   + +  ED    +   RP +TSKYMTKYERARIL TRALQISMNA
Sbjct: 61  GAEEE-PENNNEDAVDDVVGAEDDREQEKTARPWKTSKYMTKYERARILSTRALQISMNA 119

Query: 312 PVMVELEGETDPLEIAMKE 368
           PVMVELEG T PLE+   E
Sbjct: 120 PVMVELEGGTYPLEVEALE 138

[148][TOP]
>UniRef100_A9BK87 Rpabc6 n=1 Tax=Cryptophyta RepID=A9BK87_9CRYP
          Length = 137

 Score =  115 bits (287), Expect = 3e-24
 Identities = 52/76 (68%), Positives = 67/76 (88%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R+T  ++TKYE+ARILG RALQISM AP+M+E+EGETD L+IA KEL +RKIP T+RRYL
Sbjct: 62  RKTLPFLTKYEKARILGARALQISMGAPLMIEIEGETDALDIAAKELLKRKIPITLRRYL 121

Query: 411 PDGSYEDWGVDELIVE 458
           P+G++EDW +DELI+E
Sbjct: 122 PNGTFEDWDLDELIIE 137

[149][TOP]
>UniRef100_C9ZMZ7 DNA-directed RNA polymerase subunit, putative n=1 Tax=Trypanosoma
           brucei gambiense DAL972 RepID=C9ZMZ7_TRYBG
          Length = 144

 Score =  114 bits (284), Expect = 7e-24
 Identities = 68/130 (52%), Positives = 79/130 (60%), Gaps = 10/130 (7%)
 Frame = +3

Query: 99  EEEPPEPEIEEGAEEED---PDKQNDDLDA-------EPIETEDKEADQPVERPRRTSKY 248
           E+E     +  G E E     D +  D DA        P+    K  D   +R R T+  
Sbjct: 6   EDEVDRLSLSIGDEHESVAQSDDERSDADAGVVVSGPAPVRGSAKRRD---DRDRVTAPV 62

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 428
           +TKYERARILGTRALQISMNAPV+V LEGETDPL IA KELRE  IP  IRR LPD +YE
Sbjct: 63  LTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQKELREGVIPLIIRRVLPDNTYE 122

Query: 429 DWGVDELIVE 458
           DW + EL V+
Sbjct: 123 DWRICELDVD 132

[150][TOP]
>UniRef100_C4M6S1 DNA-directed RNA polymerases I, II, and III 23 kDa, putative n=1
           Tax=Entamoeba histolytica HM-1:IMSS RepID=C4M6S1_ENTHI
          Length = 122

 Score =  113 bits (283), Expect = 9e-24
 Identities = 62/99 (62%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
 Frame = +3

Query: 165 DDLDAEP-IETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGET 341
           DDL  +  IE ++ + D      R T+++MTKYE+AR+LGTRALQISMNAPV V L G T
Sbjct: 29  DDLGVDNYIEEKEIKGDD-----RTTTRFMTKYEKARVLGTRALQISMNAPVFVPLNGMT 83

Query: 342 DPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           D LEIAM EL+  KIPF IRR LP+GSYEDW V ELIVE
Sbjct: 84  DALEIAMAELKAGKIPFIIRRRLPNGSYEDWKVSELIVE 122

[151][TOP]
>UniRef100_B0EM77 DNA-directed RNA polymerases I, II, and III subunit RPABC2,
           putative n=1 Tax=Entamoeba dispar SAW760
           RepID=B0EM77_ENTDI
          Length = 122

 Score =  112 bits (280), Expect = 2e-23
 Identities = 63/119 (52%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
 Frame = +3

Query: 120 EIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERP------RRTSKYMTKYERARILG 281
           E +  +     D  N+DL  +  +  D   D  +E        R T+++MTKYE+AR+LG
Sbjct: 6   EADNDSYSMSEDSNNEDLVIDYYD--DLGVDNYIEEKEIKGDDRTTTRFMTKYEKARVLG 63

Query: 282 TRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           TRALQISMNAPV V L G TD LEIAM EL+  KIPF IRR LP+GS+EDW V ELIVE
Sbjct: 64  TRALQISMNAPVFVPLNGMTDALEIAMAELKAGKIPFIIRRRLPNGSFEDWKVSELIVE 122

[152][TOP]
>UniRef100_Q4D0Y6 DNA-directed RNA polymerase subunit, putative n=1 Tax=Trypanosoma
           cruzi RepID=Q4D0Y6_TRYCR
          Length = 144

 Score =  112 bits (279), Expect = 3e-23
 Identities = 62/131 (47%), Positives = 79/131 (60%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSK 245
           D D + + + + EE  E  +    E+ + D  +  L            D    + R T+ 
Sbjct: 5   DGDDDRLSLNFGEEQEESTLRSDDEQSEGDGADVVLSGRAASGSAVRRDG---KDRVTAP 61

Query: 246 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 425
            +TKYERARILGTRALQISMNAPV+V LEGETDPL IA KELRE  IP  +RR LPD +Y
Sbjct: 62  VLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIVRRVLPDNTY 121

Query: 426 EDWGVDELIVE 458
           EDW + EL ++
Sbjct: 122 EDWRICELDID 132

[153][TOP]
>UniRef100_Q4DDD8 DNA-directed RNA polymerase subunit, putative n=1 Tax=Trypanosoma
           cruzi RepID=Q4DDD8_TRYCR
          Length = 144

 Score =  111 bits (278), Expect = 3e-23
 Identities = 62/131 (47%), Positives = 79/131 (60%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSK 245
           D D + + + + EE  E  +    E+ + D  +  L            D    + R T+ 
Sbjct: 5   DGDDDRLSLNFGEEQEESTLRSDDEQSEGDGADVVLSGRAASGTAVRRDG---KDRVTAP 61

Query: 246 YMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSY 425
            +TKYERARILGTRALQISMNAPV+V LEGETDPL IA KELRE  IP  +RR LPD +Y
Sbjct: 62  VLTKYERARILGTRALQISMNAPVLVALEGETDPLIIAQKELREGVIPLIVRRVLPDNTY 121

Query: 426 EDWGVDELIVE 458
           EDW + EL ++
Sbjct: 122 EDWRICELDID 132

[154][TOP]
>UniRef100_C8VJX8 DNA-directed RNA polymerase I, II, and III subunit Rpb6
           (AFU_orthologue; AFUA_1G05160) n=2 Tax=Emericella
           nidulans RepID=C8VJX8_EMENI
          Length = 198

 Score =  111 bits (278), Expect = 3e-23
 Identities = 68/141 (48%), Positives = 84/141 (59%), Gaps = 17/141 (12%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAE--EE---------------DPDKQNDDLDAEPIET 194
           D  Y+DI+      P + E EEGAE  EE               DP+        E    
Sbjct: 19  DQTYDDIEPEDFLNPEDIEGEEGAEGYEEGYGGAVNGERVVVSGDPNAGYSGKVVEQARA 78

Query: 195 EDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 374
           +    DQ     R T+ YMTKYERAR+LGTRALQIS+NAPV+V+LEGETDPL+IAMKEL 
Sbjct: 79  KKIPNDQ-----RTTTPYMTKYERARVLGTRALQISLNAPVLVDLEGETDPLQIAMKELA 133

Query: 375 ERKIPFTIRRYLPDGSYEDWG 437
           ++KIP  +RRYLPDG+   +G
Sbjct: 134 QKKIPLIVRRYLPDGTEAAYG 154

[155][TOP]
>UniRef100_C9ZMZ5 DNA-directed RNA polymerase subunit, putative n=3 Tax=Trypanosoma
           brucei RepID=C9ZMZ5_TRYBG
          Length = 144

 Score =  111 bits (277), Expect = 5e-23
 Identities = 59/92 (64%), Positives = 67/92 (72%)
 Frame = +3

Query: 183 PIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAM 362
           P+    K  D   +R R T+  +TKYERARILGTRALQISMNAPV+V LEGETDPL IA 
Sbjct: 44  PVRGSAKRRD---DRDRVTAPVLTKYERARILGTRALQISMNAPVLVALEGETDPLTIAQ 100

Query: 363 KELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           KELRE  IP  IRR LPD +YEDW + EL V+
Sbjct: 101 KELREGVIPLIIRRVLPDNTYEDWRICELDVD 132

[156][TOP]
>UniRef100_A7AT24 DNA-directed RNA polymerase subunit I, putative n=1 Tax=Babesia
           bovis RepID=A7AT24_BABBO
          Length = 154

 Score =  107 bits (268), Expect = 5e-22
 Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 28/140 (20%)
 Frame = +3

Query: 123 IEEGAEEEDPDKQNDDLDAEPIE-----TEDKEADQPVERPRR-TSKYMTKYERARILGT 284
           I+E A+EE+   + DD D + +      T+  E  Q VE   R TS YMTKYE+ARI+GT
Sbjct: 15  IDEFADEEEEYDEFDDYDQQRVADVDIITDPNEYRQRVENAHRITSPYMTKYEKARIIGT 74

Query: 285 RALQISMNAPVMVELE--------------GET--------DPLEIAMKELRERKIPFTI 398
           RALQIS+NAP+ + ++              GE+        DPL IA KEL ++ +PF I
Sbjct: 75  RALQISLNAPITIPVDASMDTVDEGITMGFGESVDTSAAAIDPLVIAEKELYQKSVPFII 134

Query: 399 RRYLPDGSYEDWGVDELIVE 458
           RRYLP+GSYEDW ++ELI++
Sbjct: 135 RRYLPNGSYEDWKIEELIID 154

[157][TOP]
>UniRef100_C0NC81 DNA-directed RNA polymerase I n=1 Tax=Ajellomyces capsulatus G186AR
           RepID=C0NC81_AJECG
          Length = 159

 Score =  107 bits (268), Expect = 5e-22
 Identities = 64/161 (39%), Positives = 90/161 (55%), Gaps = 31/161 (19%)
 Frame = +3

Query: 63  ADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDL----------DAEPIET------ 194
           A D  E  D G++ EPPE E  +   E+  + +  +           D +P++       
Sbjct: 6   AGDHEEHDDAGFDYEPPEYEYIDNEPEDYVEPEQTEHGENGYAIVNGDGQPVQNGEGDVV 65

Query: 195 ---------------EDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVEL 329
                          + +E   P ++ R T+ YMTKYERAR+LGTRALQISMNAP++V+L
Sbjct: 66  SGDPNAGASKGKVMLQQREKKVPNDQ-RTTTPYMTKYERARVLGTRALQISMNAPILVDL 124

Query: 330 EGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           EGETDPL+IA+KEL ++KIP  +RR      YEDW  +EL+
Sbjct: 125 EGETDPLQIALKELAQKKIPLIVRR------YEDWTCEELL 159

[158][TOP]
>UniRef100_Q962L7 PV1H14085_P n=1 Tax=Plasmodium vivax RepID=Q962L7_PLAVI
          Length = 157

 Score =  107 bits (266), Expect = 9e-22
 Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 22/157 (14%)
 Frame = +3

Query: 54  LTMADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDA------EPIETEDKEADQ 215
           ++ A D + +  +  E++    E  +G + +D D   +D+D       +  +++ + +D 
Sbjct: 1   MSTALDAFNENYLNDEDDFMGDEFGQGVDSDDGDNYENDIDIITENQIKKEKSDYEHSDV 60

Query: 216 PVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGE----------------TDP 347
             +  R TS Y+TKYE+ARI+GTRALQIS+NAP+ + +E +                 DP
Sbjct: 61  NEDNIRITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQGGEVSNGKNEYDNYLNNDP 120

Query: 348 LEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           L IA KEL  + IPF +RRYLP+GSYEDW +DELI++
Sbjct: 121 LVIAEKELHNKSIPFILRRYLPNGSYEDWKLDELIID 157

[159][TOP]
>UniRef100_C6HAI4 DNA-directed RNA polymerase I n=1 Tax=Ajellomyces capsulatus H143
           RepID=C6HAI4_AJECH
          Length = 159

 Score =  106 bits (265), Expect = 1e-21
 Identities = 63/161 (39%), Positives = 90/161 (55%), Gaps = 31/161 (19%)
 Frame = +3

Query: 63  ADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDL----------DAEPIET------ 194
           A D  E  D G++ EPP+ E  +   E+  + +  +           D +P++       
Sbjct: 6   AGDHEEHDDAGFDYEPPQYEYIDNEPEDYVEPEQTEHGENGYAIVNGDGQPVQNGEGDVV 65

Query: 195 ---------------EDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVEL 329
                          + +E   P ++ R T+ YMTKYERAR+LGTRALQISMNAP++V+L
Sbjct: 66  SGDPNAGASKGKVMLQQREKKVPNDQ-RTTTPYMTKYERARVLGTRALQISMNAPILVDL 124

Query: 330 EGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           EGETDPL+IA+KEL ++KIP  +RR      YEDW  +EL+
Sbjct: 125 EGETDPLQIALKELAQKKIPLIVRR------YEDWTCEELL 159

[160][TOP]
>UniRef100_UPI000007B5B4 DNA-directed RNA polymerase subunit I n=1 Tax=Plasmodium falciparum
           3D7 RepID=UPI000007B5B4
          Length = 163

 Score =  106 bits (264), Expect = 1e-21
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 24/154 (15%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDA---------EPIETEDKEADQPV 221
           D + D  +  +E+    E  +G + +D +   +D+D             + E+ EA++  
Sbjct: 12  DGFNDNYLNEDEDFMGDEFGQGIDSDDGENYENDIDIITDHQIKKDNKSDYENSEANE-- 69

Query: 222 ERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETD---------------PLEI 356
           +  R TS Y+TKYE+ARI+GTRALQISMNAP+ + +E   D               PL I
Sbjct: 70  DNIRITSPYLTKYEKARIIGTRALQISMNAPLTIPIETSNDMINSKNEYDNYLNNDPLVI 129

Query: 357 AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           A KEL  + IPF +RRYLP+GSYEDW +DELI++
Sbjct: 130 AEKELYNKSIPFILRRYLPNGSYEDWRLDELIID 163

[161][TOP]
>UniRef100_O77315 DNA-directed RNA polymerase subunit I, putative n=1 Tax=Plasmodium
           falciparum 3D7 RepID=O77315_PLAF7
          Length = 153

 Score =  106 bits (264), Expect = 1e-21
 Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 24/154 (15%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDA---------EPIETEDKEADQPV 221
           D + D  +  +E+    E  +G + +D +   +D+D             + E+ EA++  
Sbjct: 2   DGFNDNYLNEDEDFMGDEFGQGIDSDDGENYENDIDIITDHQIKKDNKSDYENSEANE-- 59

Query: 222 ERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETD---------------PLEI 356
           +  R TS Y+TKYE+ARI+GTRALQISMNAP+ + +E   D               PL I
Sbjct: 60  DNIRITSPYLTKYEKARIIGTRALQISMNAPLTIPIETSNDMINSKNEYDNYLNNDPLVI 119

Query: 357 AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           A KEL  + IPF +RRYLP+GSYEDW +DELI++
Sbjct: 120 AEKELYNKSIPFILRRYLPNGSYEDWRLDELIID 153

[162][TOP]
>UniRef100_A5KB50 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
           putative n=1 Tax=Plasmodium vivax RepID=A5KB50_PLAVI
          Length = 153

 Score =  106 bits (264), Expect = 1e-21
 Identities = 58/152 (38%), Positives = 89/152 (58%), Gaps = 22/152 (14%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDA------EPIETEDKEADQPVERP 230
           D + +  +  E++    E  +G + +D D   +D+D       +  +++ + +D   +  
Sbjct: 2   DAFNENYLNDEDDFMGDEFGQGVDSDDGDNYENDIDIITENQIKKEKSDYEHSDVNEDNI 61

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGE----------------TDPLEIAM 362
           R TS Y+TKYE+ARI+GTRALQIS+NAP+ + +E +                 DPL IA 
Sbjct: 62  RITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQGGEVSNGKNEYDNYLNNDPLVIAE 121

Query: 363 KELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           KEL  + IPF +RRYLP+GSYEDW +DELI++
Sbjct: 122 KELHNKSIPFILRRYLPNGSYEDWKLDELIID 153

[163][TOP]
>UniRef100_Q0CUQ1 DNA-directed RNA polymerases I n=1 Tax=Aspergillus terreus NIH2624
           RepID=Q0CUQ1_ASPTN
          Length = 163

 Score =  106 bits (264), Expect = 1e-21
 Identities = 67/151 (44%), Positives = 88/151 (58%), Gaps = 24/151 (15%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPE----PEIEEGAE--------EEDPDKQNDD---LDAEP------- 185
           DYE  +  ++E  PE    PE  EGAE        E      N D   +  +P       
Sbjct: 14  DYEPAEEVFDENEPEDYLNPEDVEGAEGGAENYDGESYAPAVNGDRVVVSGDPNAGYSGR 73

Query: 186 IETEDKEADQPVERPRRTSKYMTKYERARILGTRALQ--ISMNAPVMVELEGETDPLEIA 359
           +  + +E   P ++ R T+ YMTKYERAR+ G   L    SMNAPV+V+LEGETDPL+IA
Sbjct: 74  VMEQTREKKVPNDQ-RTTTPYMTKYERARLFGGFILTGAASMNAPVLVDLEGETDPLQIA 132

Query: 360 MKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           +KEL ++KIP  +RRYLPDG YEDW  +EL+
Sbjct: 133 IKELNQKKIPLIVRRYLPDGYYEDWTCEELL 163

[164][TOP]
>UniRef100_B3L4G7 Dna-directed rna polymerase subunit i, putative n=1 Tax=Plasmodium
           knowlesi strain H RepID=B3L4G7_PLAKH
          Length = 158

 Score =  105 bits (263), Expect = 2e-21
 Identities = 57/152 (37%), Positives = 89/152 (58%), Gaps = 22/152 (14%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDA------EPIETEDKEADQPVERP 230
           D + +  +  E++    E  +G + +D D   +D+D       +  +++ + +D   +  
Sbjct: 7   DGFNENYLNDEDDFMGDEFGQGVDSDDGDNYENDIDIITENQIKKEKSDYEHSDANEDNI 66

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGE----------------TDPLEIAM 362
           R TS Y+TKYE+ARI+GTRALQIS+NAP+ + +E +                 DPL IA 
Sbjct: 67  RITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQGGDVSNGKNEYDNYLNNDPLVIAE 126

Query: 363 KELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           +EL  + IPF +RRYLP+GSYEDW +DELI++
Sbjct: 127 RELHNKSIPFILRRYLPNGSYEDWKLDELIID 158

[165][TOP]
>UniRef100_Q4XYQ9 DNA-directed RNA polymerase subunit I, putative n=1 Tax=Plasmodium
           chabaudi RepID=Q4XYQ9_PLACH
          Length = 156

 Score =  105 bits (262), Expect = 2e-21
 Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 23/158 (14%)
 Frame = +3

Query: 54  LTMADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDA--------EPIETEDKEA 209
           +T A D Y D     E++    E  +G + ++ +   +D+D         E  + E+ E 
Sbjct: 1   MTYAVDLYNDNYGNDEDDFMGDEFGQGVDSDEGENYENDIDIIADNQIKKEKYDYENCEG 60

Query: 210 DQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETD--------------- 344
           ++  E  R TS Y+TKYE+ARI+GTRALQIS+NAP+ + +E + D               
Sbjct: 61  NE--ENIRITSPYLTKYEKARIIGTRALQISLNAPLTIPIETQNDKSNGKSDYDNYLNND 118

Query: 345 PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           PL IA +EL  + IPF +RRYLP+GSYEDW +DELI++
Sbjct: 119 PLVIAERELYNKSIPFILRRYLPNGSYEDWRLDELIID 156

[166][TOP]
>UniRef100_UPI00006CFA18 RNA polymerases K / 14 to 18 kDa subunit family protein n=1
           Tax=Tetrahymena thermophila RepID=UPI00006CFA18
          Length = 163

 Score =  105 bits (261), Expect = 3e-21
 Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 12/143 (8%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQN-----------DDLDAEPIETEDKEADQ 215
           DD +D D   EE       +EG   +D D              D+   E +  +D++ DQ
Sbjct: 22  DDMDDGDQESEEASSRSG-DEGDSADDSDHSGTESESQSEVDKDEYPEEMVIIKDQDRDQ 80

Query: 216 PVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEG-ETDPLEIAMKELRERKIPF 392
              + + T  ++TKYE+ARI+GTRALQI+ N+P+ VE +  + DP+ IA KE  ++KIPF
Sbjct: 81  QASKTKVTPPFLTKYEKARIIGTRALQIAQNSPIYVETDDKDYDPIAIAEKEFVQKKIPF 140

Query: 393 TIRRYLPDGSYEDWGVDELIVED 461
            IRRYLP+  YEDW +DEL V D
Sbjct: 141 IIRRYLPNKEYEDWALDELEVLD 163

[167][TOP]
>UniRef100_Q86EM4 Clone ZZD193 mRNA sequence n=1 Tax=Schistosoma japonicum
           RepID=Q86EM4_SCHJA
          Length = 123

 Score =  105 bits (261), Expect = 3e-21
 Identities = 59/121 (48%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
 Frame = +3

Query: 69  DDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQND-DLDAEPIETEDKEADQPVERPRR-TS 242
           D+Y  ID    +E P  E+ +   +  PD       D  P  +  +    PVE+ +R T+
Sbjct: 3   DEYGGIDDFESDEEPLDEVPDDDLDTKPDGVTYITTDEVPRLSSGQSLAAPVEKSKRITT 62

Query: 243 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGS 422
            Y+TKYERAR+LG RALQ+SM+APVMVEL+GE DPL+IA KELR  KIP  IRR+LPD  
Sbjct: 63  PYLTKYERARVLGARALQLSMSAPVMVELDGERDPLKIAEKELRANKIPIIIRRFLPDWE 122

Query: 423 Y 425
           +
Sbjct: 123 F 123

[168][TOP]
>UniRef100_A0CLZ3 Chromosome undetermined scaffold_21, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0CLZ3_PARTE
          Length = 156

 Score =  103 bits (258), Expect = 7e-21
 Identities = 50/121 (41%), Positives = 79/121 (65%), Gaps = 4/121 (3%)
 Frame = +3

Query: 99  EEEPPEPEIEEGAEEEDPDKQNDDLDAEPIET----EDKEADQPVERPRRTSKYMTKYER 266
           ++E  +    +G E    D  +D+ + + I T    +  +  + ++  R T  ++TKYER
Sbjct: 32  QDEEMDTSQSKGQESVTSDSSDDEDENQIIRTGAMIQQSKGRKVLKNERITPPFLTKYER 91

Query: 267 ARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDE 446
           AR++GTRALQIS N+P+ V+ +  TDP+++A +EL E KIPF IRRYLP+G++EDW + E
Sbjct: 92  ARVIGTRALQISKNSPIYVDPKETTDPIQVAQQELNENKIPFIIRRYLPNGNFEDWELQE 151

Query: 447 L 449
           L
Sbjct: 152 L 152

[169][TOP]
>UniRef100_C7YNT4 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI
           77-13-4 RepID=C7YNT4_NECH7
          Length = 161

 Score =  103 bits (257), Expect = 9e-21
 Identities = 66/158 (41%), Positives = 82/158 (51%), Gaps = 31/158 (19%)
 Frame = +3

Query: 72  DYEDIDMG--------YEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPV-- 221
           D+ D D+G        YE+E      +    EED D +N   D E ++      D     
Sbjct: 3   DFGDDDVGGAGGDEPMYEDEEVTEYYDPEVVEEDEDGENRPQDGEDMDNVVVSGDPSAAA 62

Query: 222 ----------------ERPRRTSKYMTKYERARILGTRALQISM-----NAPVMVELEGE 338
                           E  R T+ YMTKYERARILGTRALQI       +A     L GE
Sbjct: 63  NALKGGEKLLKDKKIPEGERTTTPYMTKYERARILGTRALQIRFAFLERDASRPGWLTGE 122

Query: 339 TDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
           TDPL+IA+KE+RE+KIP  +RRYLPDG YEDW  +EL+
Sbjct: 123 TDPLQIAIKEMREKKIPLIVRRYLPDGYYEDWTCEELL 160

[170][TOP]
>UniRef100_Q4U9K3 RNA polymerase common subunit (Rpb6 homologue), putative n=1
           Tax=Theileria annulata RepID=Q4U9K3_THEAN
          Length = 153

 Score =  103 bits (256), Expect = 1e-20
 Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 27/139 (19%)
 Frame = +3

Query: 123 IEEGAEEEDPDKQNDDLDAEPIE-----TEDKEADQPVERPRR-TSKYMTKYERARILGT 284
           I+E AEEE+     ++ D   +      T+  E    V+   R TS Y+TKYE+ARI+GT
Sbjct: 15  IDEFAEEEEDFADFEEYDQRRVSDVDIITDPTEFKTQVDSAHRITSPYLTKYEKARIIGT 74

Query: 285 RALQISMNAPVMVELEGET---------------------DPLEIAMKELRERKIPFTIR 401
           RALQIS+NAP+ + ++G +                     DPL IA KEL ++ +PF +R
Sbjct: 75  RALQISLNAPITIPIDGPSEANDDGFTTLGDFGDTQTTAIDPLIIAEKELYQKTVPFIVR 134

Query: 402 RYLPDGSYEDWGVDELIVE 458
           RYLP+GSYEDW +DELI++
Sbjct: 135 RYLPNGSYEDWKIDELIID 153

[171][TOP]
>UniRef100_A6R5F6 DNA-directed RNA polymerases I n=1 Tax=Ajellomyces capsulatus NAm1
           RepID=A6R5F6_AJECN
          Length = 177

 Score =  103 bits (256), Expect = 1e-20
 Identities = 63/173 (36%), Positives = 90/173 (52%), Gaps = 43/173 (24%)
 Frame = +3

Query: 63  ADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDL----------DAEPIET------ 194
           A D  E  D G++ EPPE E  +   E+  + +  +           D +P++       
Sbjct: 6   AGDHEEHDDAGFDYEPPEYEYIDNEPEDYVEPEQTEHGENGYAIVNGDGQPVQNGEGDVV 65

Query: 195 ---------------EDKEADQPVERPRRTSKYMTKYERARILGTRALQI---------- 299
                          + +E   P ++ R T+ YMTKYERAR+  T +L            
Sbjct: 66  SGDPNAGASKGKVMLQQREKKVPNDQ-RTTTPYMTKYERARVFHTISLSAWRIVSSVLTR 124

Query: 300 --SMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 452
             SMNAP++V+LEGETDPL+IA+KEL ++KIP  +RRYLPDG YEDW  +EL+
Sbjct: 125 VDSMNAPILVDLEGETDPLQIALKELAQKKIPLIVRRYLPDGWYEDWTCEELL 177

[172][TOP]
>UniRef100_Q7RPV3 Plasmodium vivax PV1H14085_P n=1 Tax=Plasmodium yoelii yoelii
           RepID=Q7RPV3_PLAYO
          Length = 137

 Score =  100 bits (249), Expect = 8e-20
 Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 23/136 (16%)
 Frame = +3

Query: 120 EIEEGAEEEDPDKQNDDLDA--------EPIETEDKEADQPVERPRRTSKYMTKYERARI 275
           E  +G + ++ +   +D+D         +  + E+ E ++  E  R TS Y+TKYE+ARI
Sbjct: 4   EFGQGVDSDEGENYENDIDIIADNQIKKDKYDYENCEGNE--ENIRITSPYLTKYEKARI 61

Query: 276 LGTRALQISMNAPVMVELEGETD---------------PLEIAMKELRERKIPFTIRRYL 410
           +GTRALQIS+NAP+ + +E + D               PL IA +EL  + IPF +RRYL
Sbjct: 62  IGTRALQISLNAPLTIPIETQNDKSNGKSDYDNYLNNDPLVIAERELYNKSIPFILRRYL 121

Query: 411 PDGSYEDWGVDELIVE 458
           P+GSYEDW +DELI++
Sbjct: 122 PNGSYEDWRLDELIID 137

[173][TOP]
>UniRef100_Q98RN6 DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD
           POLYPEPTIDE(RPABC6) n=1 Tax=Guillardia theta
           RepID=Q98RN6_GUITH
          Length = 126

 Score =  100 bits (248), Expect = 1e-19
 Identities = 48/76 (63%), Positives = 59/76 (77%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           R T   +TKYE+ARILG RALQISM AP++ E+   +D L+IA KEL ERKIP TIRRYL
Sbjct: 51  RMTLPILTKYEKARILGARALQISMGAPILTEVNTLSDSLDIASKELYERKIPITIRRYL 110

Query: 411 PDGSYEDWGVDELIVE 458
           P+G YEDW ++ELI +
Sbjct: 111 PNGRYEDWKIEELIFD 126

[174][TOP]
>UniRef100_A8N2F4 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8N2F4_COPC7
          Length = 151

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 55/109 (50%), Positives = 69/109 (63%)
 Frame = +3

Query: 132 GAEEEDPDKQNDDLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNA 311
           GA E D D++  + DA P     +   QP  + R T+ Y+TKYERARIL           
Sbjct: 56  GANEGDQDQEMANGDAAPAAAPTQAERQP-NKVRVTTPYLTKYERARIL----------- 103

Query: 312 PVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
            V+V L+GETD L+IA+KEL +RKIP  IRRYLPDGS+EDW V ELI +
Sbjct: 104 -VLVPLDGETDALQIAIKELSQRKIPLIIRRYLPDGSFEDWSVSELITD 151

[175][TOP]
>UniRef100_A0CFC7 Chromosome undetermined scaffold_175, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0CFC7_PARTE
          Length = 156

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 12/140 (8%)
 Frame = +3

Query: 66  DDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKE---ADQPVERPRR 236
           DD+ +   +G EE   EPE+      +   K+   + +E    E+++   +  P+ + R 
Sbjct: 15  DDNSQSHSIGGEEL--EPEVSGITSSDVDSKERQSVTSESDSEEEQQIVRSGAPLSQSRG 72

Query: 237 ---------TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 389
                    T  ++TKYERAR++GTRALQIS N+P+ V+ +  TDP+ +A +EL E KIP
Sbjct: 73  KKVNKDERITPPFLTKYERARVIGTRALQISKNSPIYVDPKETTDPILVAQQELNENKIP 132

Query: 390 FTIRRYLPDGSYEDWGVDEL 449
           F IRRY P+G++EDW + EL
Sbjct: 133 FIIRRYWPNGNFEDWELQEL 152

[176][TOP]
>UniRef100_Q4N107 Putative uncharacterized protein n=1 Tax=Theileria parva
           RepID=Q4N107_THEPA
          Length = 391

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 21/97 (21%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELEGET---------------------DP 347
           R TS Y+TKYE+ARI+GTRALQIS+NAP+ + ++G +                     DP
Sbjct: 295 RITSPYLTKYEKARIIGTRALQISLNAPITIPIDGPSEATDDGFTTLGDFGDTQTTAIDP 354

Query: 348 LEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           L IA KEL ++ +PF +RRYLP+GSYEDW +DELI++
Sbjct: 355 LIIAEKELYQKTVPFIVRRYLPNGSYEDWKIDELIID 391

[177][TOP]
>UniRef100_Q8SRE9 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
           RepID=Q8SRE9_ENCCU
          Length = 144

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 4/110 (3%)
 Frame = +3

Query: 138 EEEDPDKQND----DLDAEPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISM 305
           ++ED D  N+    +++ E +E  D          R+T   MTKYE+A ++G RA Q+S 
Sbjct: 30  DKEDVDSVNEYSTEEINMEVLEISDAGMKIKASE-RKTLPRMTKYEKAHVIGVRATQLSA 88

Query: 306 NAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 455
            AP  V++  ET+PL IA  EL E+KIPF IRR LPD S+EDW VDEL++
Sbjct: 89  GAPPFVDIGNETNPLNIANMELSEKKIPFIIRRKLPDSSFEDWAVDELMI 138

[178][TOP]
>UniRef100_A2E3F1 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
           putative n=1 Tax=Trichomonas vaginalis G3
           RepID=A2E3F1_TRIVA
          Length = 94

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 43/77 (55%), Positives = 60/77 (77%)
 Frame = +3

Query: 225 RPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           +P  T++Y+TKYE+AR+LG RA+QI+  APV +++  E DPL IA +EL+++K P  IRR
Sbjct: 11  KPVNTTEYLTKYEKARVLGIRAMQIANGAPVQIDIGSEVDPLNIAEEELKQKKTPLIIRR 70

Query: 405 YLPDGSYEDWGVDELIV 455
            LPDG+YED  V+ELIV
Sbjct: 71  TLPDGTYEDVAVNELIV 87

[179][TOP]
>UniRef100_A2DSU3 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
           putative n=1 Tax=Trichomonas vaginalis G3
           RepID=A2DSU3_TRIVA
          Length = 94

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 43/77 (55%), Positives = 60/77 (77%)
 Frame = +3

Query: 225 RPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           +P  T++Y+TKYE+AR+LG RA+QI+  APV +++  E DPL IA +EL+++K P  IRR
Sbjct: 11  KPINTTEYLTKYEKARVLGIRAMQIANGAPVQIDIGSEVDPLNIAEEELKQKKTPLIIRR 70

Query: 405 YLPDGSYEDWGVDELIV 455
            LPDG+YED  V+ELIV
Sbjct: 71  TLPDGTYEDVAVNELIV 87

[180][TOP]
>UniRef100_B6QNS4 DNA-directed RNA polymerase I, II, and III subunit Rpb6 n=1
           Tax=Penicillium marneffei ATCC 18224 RepID=B6QNS4_PENMQ
          Length = 141

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 60/134 (44%), Positives = 77/134 (57%), Gaps = 30/134 (22%)
 Frame = +3

Query: 72  DYEDIDMGYEEEPPEPEIEEGAEE-----EDPDKQNDDLDA-------------EPIETE 197
           D+E  D GY+ +  EPE ++   E     ED D + D   A               I + 
Sbjct: 6   DHEAEDGGYDYDAGEPEYDDNEPEDFLEPEDVDVEGDQAAAAAEDVYQGAVNGERTIISG 65

Query: 198 DKEA-------DQPVERP-----RRTSKYMTKYERARILGTRALQISMNAPVMVELEGET 341
           D  A       +QP E+      R T+ YMTKYERAR+LGTRALQISMNAPV+V+LEGET
Sbjct: 66  DPNAGGGRGVMEQPREKKIPNDQRSTTPYMTKYERARVLGTRALQISMNAPVLVDLEGET 125

Query: 342 DPLEIAMKELRERK 383
           DPL+IA+KEL ++K
Sbjct: 126 DPLQIALKELNQKK 139

[181][TOP]
>UniRef100_A2FZ94 DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide,
           putative n=1 Tax=Trichomonas vaginalis G3
           RepID=A2FZ94_TRIVA
          Length = 85

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 43/77 (55%), Positives = 55/77 (71%)
 Frame = +3

Query: 225 RPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           RPR T+ Y+TKYERAR+LGTR +QIS+ APV ++    TDP+ IA KEL   ++P  IRR
Sbjct: 9   RPRITTPYLTKYERARVLGTRGMQISLGAPVTIDAGDLTDPIAIAEKELEAGQLPLIIRR 68

Query: 405 YLPDGSYEDWGVDELIV 455
           YLP+  YED  V  LI+
Sbjct: 69  YLPNHEYEDVAVKYLII 85

[182][TOP]
>UniRef100_UPI000194E6EC PREDICTED: polymerase (RNA) II (DNA directed) polypeptide F,
           partial n=1 Tax=Taeniopygia guttata RepID=UPI000194E6EC
          Length = 101

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 56/109 (51%), Positives = 66/109 (60%)
 Frame = +3

Query: 48  LPLTMADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLDAEPIETEDKEADQPVER 227
           L L +  DD++D+     EE    E  E AEEE           E +E       Q   +
Sbjct: 7   LSLQLDVDDFDDV-----EEDEGLEDLENAEEEGQ---------ENVEILPSGERQQANQ 52

Query: 228 PRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 374
            R T+ YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+
Sbjct: 53  KRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 101

[183][TOP]
>UniRef100_C9JK43 Putative uncharacterized protein POLR2F n=1 Tax=Homo sapiens
           RepID=C9JK43_HUMAN
          Length = 158

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 51/96 (53%), Positives = 63/96 (65%), Gaps = 11/96 (11%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRER 380
           +LGTRALQI+M APVMVELEGETDPL IAMKEL  R
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELNAR 100

[184][TOP]
>UniRef100_B0QYL9 Polymerase (RNA) II (DNA directed) polypeptide F n=1 Tax=Homo
           sapiens RepID=B0QYL9_HUMAN
          Length = 158

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 51/96 (53%), Positives = 63/96 (65%), Gaps = 11/96 (11%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELRER 380
           +LGTRALQI+M APVMVELEGETDPL IAMKEL  R
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELNAR 100

[185][TOP]
>UniRef100_C1BXG2 DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1
           Tax=Esox lucius RepID=C1BXG2_ESOLU
          Length = 98

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 51/96 (53%), Positives = 67/96 (69%), Gaps = 9/96 (9%)
 Frame = +3

Query: 114 EPEIEEGA-EEEDPDKQNDDLDAEPIETEDKEADQ--------PVERPRRTSKYMTKYER 266
           E + ++G  ++ + D+  DDL  E +E +D+E  Q           + R T+ YMTKYER
Sbjct: 5   EGDFDDGDFDDAEEDEGLDDL--ENVEDDDQENVQILPAGEGSQANQKRITTPYMTKYER 62

Query: 267 ARILGTRALQISMNAPVMVELEGETDPLEIAMKELR 374
           AR+LGTRALQI+M APVMVELEGETDPL+IAMKEL+
Sbjct: 63  ARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELK 98

[186][TOP]
>UniRef100_UPI0000E25B17 PREDICTED: similar to RNA polymerase II isoform 1 n=1 Tax=Pan
           troglodytes RepID=UPI0000E25B17
          Length = 126

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 11/94 (11%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELR 374
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 98

[187][TOP]
>UniRef100_B0QYL8 Polymerase (RNA) II (DNA directed) polypeptide F n=1 Tax=Homo
           sapiens RepID=B0QYL8_HUMAN
          Length = 126

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 50/94 (53%), Positives = 63/94 (67%), Gaps = 11/94 (11%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKELR 374
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELK 98

[188][TOP]
>UniRef100_A8BHD7 DNA-directed RNA polymerase II RPB6 n=2 Tax=Giardia intestinalis
           RepID=A8BHD7_GIALA
          Length = 104

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
 Frame = +3

Query: 180 EPIETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELE---GETDPL 350
           +P  ++ K AD      R T +Y+TK+E+ARILGTRA Q+SM AP  + +    G  DPL
Sbjct: 11  QPFISKIKPADPD---KRITPRYLTKFEQARILGTRAYQLSMGAPAHITITDKGGHLDPL 67

Query: 351 EIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 461
            +A +EL    IP  IRR+LPDG+YEDW + EL + D
Sbjct: 68  VLARRELANNAIPIIIRRHLPDGTYEDWKLSELHIID 104

[189][TOP]
>UniRef100_B7XI69 DNA-directed RNA polymerase, subunit K/omega n=1 Tax=Enterocytozoon
           bieneusi H348 RepID=B7XI69_ENTBH
          Length = 75

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 38/71 (53%), Positives = 56/71 (78%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 428
           MT YE+A+I+G RA Q+S +AP +V++   TD +EIA KEL E+K+PF +RR LP+GSYE
Sbjct: 1   MTIYEKAKIIGVRATQLSDDAPPLVDIGNLTDCIEIAKKELAEKKLPFIVRRVLPNGSYE 60

Query: 429 DWGVDELIVED 461
           DW ++EL++ +
Sbjct: 61  DWKIEELLIPE 71

[190][TOP]
>UniRef100_C9IYL7 Putative uncharacterized protein POLR2F n=1 Tax=Homo sapiens
           RepID=C9IYL7_HUMAN
          Length = 111

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 50/93 (53%), Positives = 62/93 (66%), Gaps = 11/93 (11%)
 Frame = +3

Query: 126 EEGAEEEDPDKQNDDLDAEPIETEDKEADQPVE------RP-----RRTSKYMTKYERAR 272
           E+  + +D D   +D   + +E  ++E  + VE      RP     R T+ YMTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 273 ILGTRALQISMNAPVMVELEGETDPLEIAMKEL 371
           +LGTRALQI+M APVMVELEGETDPL IAMKEL
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKEL 97

[191][TOP]
>UniRef100_Q3LW93 DNA-directed RNA polymerase I, II and III n=1 Tax=Bigelowiella
           natans RepID=Q3LW93_BIGNA
          Length = 115

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 49/111 (44%), Positives = 68/111 (61%), Gaps = 11/111 (9%)
 Frame = +3

Query: 150 PDKQNDDLDAEPIETEDKEAD-----------QPVERPRRTSKYMTKYERARILGTRALQ 296
           P ++N +   +   + D E++           QP++R   +  +++K+E+A++LG RA Q
Sbjct: 3   PSQKNFNTSLKIFSSSDNESEIKNSIGKNYLRQPIKR--FSYPFISKFEKAKLLGVRAKQ 60

Query: 297 ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 449
           IS   P  V LEGETDPL IA+KE RE KIP  IRRY  DGSYED+ V EL
Sbjct: 61  ISNGNPPTVPLEGETDPLLIALKEYRENKIPLKIRRYFSDGSYEDFFVWEL 111

[192][TOP]
>UniRef100_C6LWY4 DNA-directed RNA polymerase II RPB6 n=1 Tax=Giardia intestinalis
           ATCC 50581 RepID=C6LWY4_GIALA
          Length = 104

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 42/80 (52%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
 Frame = +3

Query: 231 RRTSKYMTKYERARILGTRALQISMNAPVMVELE---GETDPLEIAMKELRERKIPFTIR 401
           R T +Y+TK+E+ARILGTRA Q+SM AP  + +    G  DPL +A +EL    IP  IR
Sbjct: 25  RITPRYLTKFEQARILGTRAYQLSMGAPAHITITDKGGHLDPLVLARRELANNAIPIIIR 84

Query: 402 RYLPDGSYEDWGVDELIVED 461
           R+LPDG+YEDW + EL + D
Sbjct: 85  RHLPDGTYEDWKLSELHIID 104

[193][TOP]
>UniRef100_A9A2B7 RNA polymerase Rpb6 n=1 Tax=Nitrosopumilus maritimus SCM1
           RepID=A9A2B7_NITMS
          Length = 182

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 31/165 (18%)
 Frame = +3

Query: 42  NSLPLTMADDDYEDIDMGYEEEPPEPEIEEGA------------------EEEDPDKQND 167
           N+  + +A+D+ +       EE  EPE+E  A                   E   +K+ D
Sbjct: 19  NTEVVEVAEDEIQST-----EEIAEPEVETNAGLNKALDTYRKLIEKKVDAEPLTEKEQD 73

Query: 168 DLDAEPIETEDKEADQ------PVERPRRTSKY------MTKYERARILGTRALQISMNA 311
           DL+ +  E E +E  +      PVE P   +K       +T++E+ARI+G RALQ+S+ A
Sbjct: 74  DLEKKIKEIESREIVETVEEHDPVEIPCEKNKVTIGPPTLTRFEKARIMGARALQLSLGA 133

Query: 312 PVMVELEGETD-PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVD 443
           P  + +       L+I+M+EL +R IP TIRR LP+G Y++  +D
Sbjct: 134 PPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDYQNIPID 178

[194][TOP]
>UniRef100_B3T8Y5 Putative RNA polymerase Rpb6 n=1 Tax=uncultured marine
           crenarchaeote HF4000_APKG6C9 RepID=B3T8Y5_9ARCH
          Length = 168

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 13/121 (10%)
 Frame = +3

Query: 120 EIEEGAEEEDPDKQNDDLDAEPIETEDKEA---DQPVERPRRTSK---------YMTKYE 263
           ++ E   E+  +K+  ++D E     ++E    D P ++   TSK          +T++E
Sbjct: 45  KVRECGREDITEKEIAEIDKECEIIRNREIITKDIPHKKVEITSKDNQILIGPPMLTRFE 104

Query: 264 RARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGV 440
           +ARI+G RALQ+S+ APV +E+ +  T  LEIAM+EL+++ IP  I+R LP+G Y++  +
Sbjct: 105 KARIMGARALQLSLGAPVFIEIPKNATTSLEIAMEELKQKVIPIVIKRTLPNGDYQNLPL 164

Query: 441 D 443
           D
Sbjct: 165 D 165

[195][TOP]
>UniRef100_A0RUC3 DNA-directed RNA polymerase, subunit K/omega n=1 Tax=Cenarchaeum
           symbiosum RepID=A0RUC3_CENSY
          Length = 155

 Score = 67.8 bits (164), Expect = 6e-10
 Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEE------------EDPDKQNDDLDAEPIETEDK 203
           M+D + +++ +   E   EPEI+ G  +            E  ++Q ++L+    E +++
Sbjct: 1   MSDANDQELVVEGSEAAGEPEIDIGLSKALESYRRLAEVNELTEEQQEELEVRIKEIQER 60

Query: 204 EADQ--PVERPRRTSK---------YMTKYERARILGTRALQISMNAPVMVELEGET-DP 347
           +  +   V  P+  +           +T++E+ARI+G RALQ+S+ AP  +E+  +    
Sbjct: 61  DVIEIDTVHEPQELTSDKKILIGPPVLTRFEKARIMGARALQLSLGAPPFIEIPADARTS 120

Query: 348 LEIAMKELRERKIPFTIRRYLPDGSYED 431
           L+IAM EL +R IP  IRR LP+G Y++
Sbjct: 121 LDIAMGELEKRIIPIVIRRVLPNGDYQN 148

[196][TOP]
>UniRef100_Q6W391 Predicted DNA-directed RNA polymerase IIb n=1 Tax=uncultured
           crenarchaeote DeepAnt-EC39 RepID=Q6W391_9CREN
          Length = 168

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
 Frame = +3

Query: 120 EIEEGAEEEDPDKQNDDLDAEPIETEDKEA---DQPVERPRRTSK---------YMTKYE 263
           +I EG  +E  +KQ  ++D E     ++E    D   E    TS           +T++E
Sbjct: 45  KIREGDNKELTEKQIAEIDKECEIIRNREIITKDLQHEVVEITSDGGHVIVGPITLTRFE 104

Query: 264 RARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGV 440
           +ARI+G RALQ+S+ APV VE+ +  T  L+IAM+EL++R IP  I+R LP+  Y++  +
Sbjct: 105 KARIMGARALQLSLGAPVFVEIPKNTTTSLQIAMEELKKRVIPIVIKRTLPNQDYQNIPL 164

Query: 441 DE 446
           D+
Sbjct: 165 DK 166

[197][TOP]
>UniRef100_Q46CK9 DNA-directed RNA polymerase, subunit K n=1 Tax=Methanosarcina
           barkeri str. Fusaro RepID=Q46CK9_METBF
          Length = 60

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 30/51 (58%), Positives = 41/51 (80%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T++ERARI+G RALQI+M APV+VE +G  DPL +A+KEL+   IP T++R
Sbjct: 7   TRFERARIIGARALQIAMGAPVLVEDDGRLDPLNLAIKELKAGVIPITVKR 57

[198][TOP]
>UniRef100_Q8PW42 DNA-directed RNA polymerase subunit K n=1 Tax=Methanosarcina mazei
           RepID=RPOK_METMA
          Length = 83

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 29/51 (56%), Positives = 41/51 (80%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T++ERARI+G RALQI+M APV+VE +G  DPL +A++EL+   IP T++R
Sbjct: 30  TRFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80

[199][TOP]
>UniRef100_Q5UQ32 DNA-directed RNA polymerase subunit 6 n=1 Tax=Acanthamoeba
           polyphaga mimivirus RepID=RPO6_MIMIV
          Length = 396

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 43/174 (24%)
 Frame = +3

Query: 57  TMADDDYEDID-MGYEEEPPEPEIEEGAEEED---PDKQNDDLDAEPIETED-------- 200
           T  D+ +  ID MG  E+P +P  +E  E ED    D  N +++ +  + ED        
Sbjct: 86  TDGDEKFNPIDEMGEPEDPDDPSEQEEDEVEDLGSEDVDNVEIEDDAADIEDLDPELVDE 145

Query: 201 ---------------------KEADQPV----------ERPRRTSKYMTKYERARILGTR 287
                                 E D  +          +  R T   +T YE  RILGTR
Sbjct: 146 ARNSKSKQCYMKNLNKDFIALDEDDSGIYSKIEYKKIPDNERETDPILTYYEIVRILGTR 205

Query: 288 ALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDEL 449
           A Q +  A  +++      P ++A  EL  +   F +RR+LP   YEDW +DEL
Sbjct: 206 AQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHLPGKKYEDWRIDEL 259

[200][TOP]
>UniRef100_Q9YDJ9 DNA-directed RNA polymerase subunit K n=1 Tax=Aeropyrum pernix
           RepID=RPOK_AERPE
          Length = 89

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = +3

Query: 246 YMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 419
           Y+TKYERARI+G RA Q+S+ AP +V+ E  G  +PL+IA  E+    +P +I RYLP G
Sbjct: 7   YLTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGG 66

Query: 420 SYEDWGVDELI 452
             +   +  L+
Sbjct: 67  GGQSLSLSRLV 77

[201][TOP]
>UniRef100_B6TIG7 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B6TIG7_MAIZE
          Length = 47

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQNDDLD 176
           MADDDY +IDMGYE+EPPEPEIEEGAEEE P+   D  D
Sbjct: 1   MADDDYNEIDMGYEDEPPEPEIEEGAEEE-PENNEDAPD 38

[202][TOP]
>UniRef100_B6TDT8 Glycine-rich RNA-binding protein 2 n=1 Tax=Zea mays
           RepID=B6TDT8_MAIZE
          Length = 203

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +3

Query: 60  MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDKQND 167
           MADDDY +IDMGYE+EPPEPEIEEGAEEE P+   D
Sbjct: 1   MADDDYNEIDMGYEDEPPEPEIEEGAEEE-PENNED 35

[203][TOP]
>UniRef100_Q8TT40 DNA-directed RNA polymerase subunit K n=1 Tax=Methanosarcina
           acetivorans RepID=RPOK_METAC
          Length = 60

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 28/51 (54%), Positives = 40/51 (78%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T++ERARI+G RALQI+M APV+V+ +G  DPL +A+ EL+   IP T++R
Sbjct: 7   TRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57

[204][TOP]
>UniRef100_O26148 DNA-directed RNA polymerase subunit K n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=RPOK_METTH
          Length = 61

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 28/55 (50%), Positives = 42/55 (76%)
 Frame = +3

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           SK +T++ERAR++G RALQISM A  +VE++   DP++IA KEL ++ +P  +RR
Sbjct: 5   SKKLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59

[205][TOP]
>UniRef100_Q8TV21 DNA-directed RNA polymerase subunit K/omega n=1 Tax=Methanopyrus
           kandleri RepID=Q8TV21_METKA
          Length = 56

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 28/52 (53%), Positives = 40/52 (76%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           +T++E ARI+G RALQI+M +PV+VE+EG+ DPLEIA +E  E  +P  + R
Sbjct: 4   LTRFEIARIVGARALQIAMGSPVLVEVEGDEDPLEIAKREFDEGVVPVVVIR 55

[206][TOP]
>UniRef100_A2BLA4 DNA-directed RNA polymerase subunit K n=1 Tax=Hyperthermus
           butylicus DSM 5456 RepID=A2BLA4_HYPBU
          Length = 102

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
 Frame = +3

Query: 192 TEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEG-----ETDPLEI 356
           TE+   ++   R +    ++T++ERAR++G RALQISM APV++++E        DP+ I
Sbjct: 3   TEEYNIEELKARIKIGPPWLTRFERARVIGVRALQISMGAPVLIDVEKLPRHVREDPVLI 62

Query: 357 AMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 461
           A KEL    +P TI RY   G  +   +  L+V D
Sbjct: 63  AKKELEIGVLPMTIVRYTRRGDVQPIPLKWLVVLD 97

[207][TOP]
>UniRef100_A3CWI4 DNA-directed RNA polymerase, subunit K n=1 Tax=Methanoculleus
           marisnigri JR1 RepID=A3CWI4_METMJ
          Length = 55

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 30/51 (58%), Positives = 41/51 (80%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T+YERARI+G RALQISM APV+V+   +T+PLEIA++E  +  IP T++R
Sbjct: 5   TRYERARIIGARALQISMGAPVLVKTP-KTEPLEIALEEYDQDMIPITVKR 54

[208][TOP]
>UniRef100_A1RWX0 DNA-directed RNA polymerase subunit K n=1 Tax=Thermofilum pendens
           Hrk 5 RepID=RPOK_THEPD
          Length = 81

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
 Frame = +3

Query: 246 YMTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRRYLPDGS 422
           ++T++ERARI+G RALQIS+ APV++++  E +DP+ IA KEL    +P  + R+ P+G 
Sbjct: 7   WLTRFERARIIGIRALQISLGAPVLIQVSEELSDPITIAEKELELGLLPIIVVRWTPEGK 66

Query: 423 YED 431
            ++
Sbjct: 67  IQE 69

[209][TOP]
>UniRef100_O29134 DNA-directed RNA polymerase subunit K n=1 Tax=Archaeoglobus
           fulgidus RepID=RPOK_ARCFU
          Length = 75

 Score = 60.5 bits (145), Expect = 9e-08
 Identities = 28/51 (54%), Positives = 41/51 (80%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T++E+ARI+G RALQI+M APV++E + +T+PLEIA++E     IP T+RR
Sbjct: 12  TRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61

[210][TOP]
>UniRef100_C8S9M9 RNA polymerase Rpb6 n=1 Tax=Ferroglobus placidus DSM 10642
           RepID=C8S9M9_FERPL
          Length = 73

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 28/51 (54%), Positives = 40/51 (78%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T++E+ARI+G RALQI+M APV++E + +TDPLEIA +E     IP T++R
Sbjct: 10  TRFEKARIIGARALQIAMGAPVLIETD-KTDPLEIAKEEFERGVIPITVKR 59

[211][TOP]
>UniRef100_Q8ZTF9 DNA-directed RNA polymerase subunit K n=1 Tax=Pyrobaculum
           aerophilum RepID=RPOK_PYRAE
          Length = 106

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
 Frame = +3

Query: 186 IETEDKEADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIA 359
           I+  DK  ++    P R    +TKYE ARI+G RALQ++M A  +V+++  G  DP+ IA
Sbjct: 14  IDVVDKAINKREFYPPR----LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIA 69

Query: 360 MKELRERKIPFTIRRYLPDG 419
           M+ELR   + F I R +PDG
Sbjct: 70  MEELRRGLLDFIIVREMPDG 89

[212][TOP]
>UniRef100_Q0W8C8 DNA-directed RNA polymerase, subunit K n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W8C8_UNCMA
          Length = 88

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 26/51 (50%), Positives = 38/51 (74%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T+YERARI+G RALQISM APV+ +     +P+E+A+ EL +  +P T+R+
Sbjct: 25  TRYERARIIGARALQISMGAPVLAKNPKTVEPIEVALLELEQGLVPITVRK 75

[213][TOP]
>UniRef100_B1Y9L9 RNA polymerase Rpb6 n=1 Tax=Thermoproteus neutrophilus V24Sta
           RepID=B1Y9L9_THENV
          Length = 109

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDGS 422
           +TKYE ARILG RA+Q++M A  +V++   G TDP+ IA +EL+   + F I R LPDG 
Sbjct: 34  LTKYEIARILGARAMQLAMGAQPLVDVRELGTTDPVLIAAEELKRGLLDFIIVRELPDGK 93

Query: 423 YEDWGVDELI 452
            E   + EL+
Sbjct: 94  TERLRLKELL 103

[214][TOP]
>UniRef100_B8GEG0 RNA polymerase Rpb6 n=1 Tax=Methanosphaerula palustris E1-9c
           RepID=B8GEG0_METPE
          Length = 56

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 28/51 (54%), Positives = 40/51 (78%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T+YERARI+G R+LQISM AP++V    ++DPLEIA++E  +  IP T++R
Sbjct: 5   TRYERARIIGARSLQISMGAPILVRTT-KSDPLEIALEEYNQGIIPITVKR 54

[215][TOP]
>UniRef100_B5IDF9 RNA polymerases K / 14 to 18 kDa subunit n=1 Tax=Aciduliprofundum
           boonei T469 RepID=B5IDF9_9EURY
          Length = 57

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 404
           T++E+ARI+G RALQISM APV++ L E   DPL+IAM E  +  IP T++R
Sbjct: 4   TRFEKARIIGARALQISMGAPVLIHLPEDVADPLDIAMYEFEKGVIPITVKR 55

[216][TOP]
>UniRef100_B5IDB0 RNA polymerases K / 14 to 18 kDa subunit n=1 Tax=Aciduliprofundum
           boonei T469 RepID=B5IDB0_9EURY
          Length = 57

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 29/52 (55%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 404
           T++E+ARI+G RALQISM APV++ L E   DPL+IAM E  +  IP T++R
Sbjct: 4   TRFEKARIIGARALQISMGAPVLIHLPENIVDPLDIAMYEFEKGVIPITVKR 55

[217][TOP]
>UniRef100_Q2FTP3 DNA-directed RNA polymerase, subunit K n=1 Tax=Methanospirillum
           hungatei JF-1 RepID=Q2FTP3_METHJ
          Length = 55

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T+YE+ARI+G RALQISM AP+++      DPLEIAM+E     IP T++R
Sbjct: 5   TRYEKARIVGARALQISMGAPILI-ATSSIDPLEIAMEEFDREVIPITVKR 54

[218][TOP]
>UniRef100_A2SSV2 DNA-directed RNA polymerase subunit K n=1 Tax=Methanocorpusculum
           labreanum Z RepID=RPOK_METLZ
          Length = 62

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 28/51 (54%), Positives = 40/51 (78%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T+YERARI+G RALQISM APV+V+   + DPL+IA++E    ++P T++R
Sbjct: 4   TRYERARIVGARALQISMGAPVLVKTV-KIDPLDIALEEFDADRVPITVKR 53

[219][TOP]
>UniRef100_A5UN60 DNA-directed RNA polymerase, subunit K, RpoK n=2
           Tax=Methanobrevibacter smithii RepID=A5UN60_METS3
          Length = 65

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 26/57 (45%), Positives = 41/57 (71%)
 Frame = +3

Query: 237 TSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRY 407
           T++ +T++ERAR+LG RA+QISM A  +VE+    DP++IA +EL+   +P  + RY
Sbjct: 7   TTENLTRFERARLLGARAIQISMGAKPLVEIGDSLDPIDIAYEELKAGVLPLDVIRY 63

[220][TOP]
>UniRef100_Q6L1M4 DNA-directed RNA polymerase subunit K n=1 Tax=Picrophilus torridus
           RepID=RPOK_PICTO
          Length = 60

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRR 404
           +TK+E+ARI+G RALQI+M APV++++  +  DP++IAM E     IP TI+R
Sbjct: 6   LTKFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58

[221][TOP]
>UniRef100_A0B6E6 DNA-directed RNA polymerase subunit K n=1 Tax=Methanosaeta
           thermophila PT RepID=RPOK_METTP
          Length = 60

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 28/51 (54%), Positives = 39/51 (76%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T++ERARI+G RALQI M APV++  +   DPLEIA++E+R   IP T++R
Sbjct: 7   TRFERARIVGARALQIFMGAPVLIRTD-SIDPLEIALEEMRLGVIPITVKR 56

[222][TOP]
>UniRef100_A7IAH0 RNA polymerase Rpb6 n=1 Tax=Candidatus Methanoregula boonei 6A8
           RepID=A7IAH0_METB6
          Length = 57

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           T+YERARI+G RALQISM AP+++      DPLEIA++E     IP T++R
Sbjct: 7   TRYERARIIGARALQISMGAPLLIS-TSRIDPLEIAIEEFNADIIPITVKR 56

[223][TOP]
>UniRef100_B7XL76 DNA-directed RNA polymerase, subunit K/omega n=1 Tax=Enterocytozoon
           bieneusi H348 RepID=B7XL76_ENTBH
          Length = 57

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 26/50 (52%), Positives = 38/50 (76%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 398
           MT YE+A+I+G RA Q+S +AP +V++   TD +EIA KEL E+K+PF +
Sbjct: 1   MTIYEKAKIIGVRATQLSDDAPPLVDIGNLTDCIEIAKKELAEKKLPFIV 50

[224][TOP]
>UniRef100_A3MX22 DNA-directed RNA polymerase, omega subunit n=1 Tax=Pyrobaculum
           calidifontis JCM 11548 RepID=A3MX22_PYRCJ
          Length = 110

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +TKYE ARI+G RA Q++M A  +V++   G  DP+ IAM+ELR+  + F I R LPDG
Sbjct: 35  LTKYEIARIIGARATQLAMGAQPLVDVRQLGTIDPVLIAMEELRQGLLDFIIVRELPDG 93

[225][TOP]
>UniRef100_P0C9D6 DNA-directed RNA polymerase subunit 6 homolog n=1 Tax=African swine
           fever virus Malawi LIL 20/1 RepID=RPB6_ASFM2
          Length = 151

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
 Frame = +3

Query: 60  MADDDYEDIDMG-----YEEEPPEPEIEEGAEEEDPDKQNDDLDAEP------IETEDKE 206
           MAD+D ED+ M      Y E   E  ++   E ED  +  D++   P      ++   + 
Sbjct: 1   MADNDNEDVIMDDLVEEYVETEEENFVDSEEESEDKSEDKDEIVESPSICEGFVQASSQT 60

Query: 207 ADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 386
                +  R TS  +T +E  R++  RA Q+++N   M++ +  + P++IA +EL  RKI
Sbjct: 61  LVIIPDNERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKI 119

Query: 387 PFTIRRYL---PDGS--YEDWGVDEL 449
           P  + R +   P+G    E W   E+
Sbjct: 120 PLLVMRCIKVTPEGQKIVEIWNPREM 145

[226][TOP]
>UniRef100_UPI0001A48A41 DNA-DIRECTED RNA POLYMERASE RPO6 SUBUNIT n=1 Tax=Sulfolobus
           shibatae RepID=UPI0001A48A41
          Length = 95

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +T+YE AR++  RALQ++M AP ++++     TD + IA +E R   +P TIRR LP+G
Sbjct: 27  LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85

[227][TOP]
>UniRef100_Q97ZJ9 DNA-directed RNA polymerase subunit K n=2 Tax=Sulfolobus
           solfataricus RepID=RPOK_SULSO
          Length = 95

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +T+YE AR++  RALQ++M AP ++++     TD + IA +E R   +P TIRR LP+G
Sbjct: 27  LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85

[228][TOP]
>UniRef100_P42484 DNA-directed RNA polymerase subunit 6 homolog n=2 Tax=African swine
           fever virus RepID=RPB6_ASFB7
          Length = 147

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 12/142 (8%)
 Frame = +3

Query: 60  MADDDYEDIDM-GYEEEPPEPEIEEGAEEEDPDKQNDDLDAEP------IETEDKEADQP 218
           MAD+D EDI M    EE  E E E   + E+  +  D++   P      ++   +     
Sbjct: 1   MADNDNEDIIMDDLVEEYVETEEENFVDSEEESEDKDEIVESPSICEGFVQASSQTLVII 60

Query: 219 VERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTI 398
            +  R TS  +T +E  R++  RA Q+++N   M++ +  + P++IA +EL  RKIP  +
Sbjct: 61  PDNERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKIPLLV 119

Query: 399 RRYL---PDGS--YEDWGVDEL 449
            R +   P+G    E W   E+
Sbjct: 120 MRCIKVTPEGQKIVEIWNPREM 141

[229][TOP]
>UniRef100_B0R4Y7 DNA-directed RNA polymerase subunit K n=2 Tax=Halobacterium
           salinarum RepID=RPOK_HALS3
          Length = 60

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 25/55 (45%), Positives = 42/55 (76%)
 Frame = +3

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 404
           S++ ++YE+ARI+G RALQ++  APV+V+ + +T+P+ IA +E     +PFT+RR
Sbjct: 4   SQHFSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57

[230][TOP]
>UniRef100_Q08399 DNA-directed RNA polymerase subunit 6 homolog n=1 Tax=African swine
           fever virus Malawi LIL 20/1 RepID=RPO6_ASFM2
          Length = 139

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 14/134 (10%)
 Frame = +3

Query: 60  MADDDYEDIDMG-----YEEEPPEPEIEEGAEEEDPDKQNDDLDAEP------IETEDKE 206
           MAD+D ED+ M      Y E   E  ++   E ED  +  D++   P      ++   + 
Sbjct: 1   MADNDNEDVIMDDLVEEYVETEEENFVDSEEESEDKSEDKDEIVESPSICEGFVQASSQT 60

Query: 207 ADQPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKI 386
                +  R TS  +T +E  R++  RA Q+++N   M++ +  + P++IA +EL  RKI
Sbjct: 61  LVIIPDNERITSNVLTTFEATRLVAVRAQQLAINGSTMLK-KKYSSPIDIAKQELFNRKI 119

Query: 387 PFTIRRYL---PDG 419
           P  + R +   P+G
Sbjct: 120 PLLVMRCIKVTPEG 133

[231][TOP]
>UniRef100_UPI0000F51709 DNA-directed RNA polymerase subunit K n=1 Tax=Ferroplasma
           acidarmanus fer1 RepID=UPI0000F51709
          Length = 56

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRERKIPFTIRR 404
           +TK+E+ARI+G RALQI+M APV++++  +  DP++IA+ E     IP TIRR
Sbjct: 3   LTKFEKARIIGARALQIAMGAPVILDVSPDMIDPIDIAIFEFDNGVIPITIRR 55

[232][TOP]
>UniRef100_B8YB61 RNA polymerase subunit 6 n=1 Tax=Sulfolobus shibatae B12
           RepID=B8YB61_SULSH
          Length = 95

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +T+YE AR++  RALQ++M AP ++++     TD + IA +E +   +P TIRR LP+G
Sbjct: 27  LTRYEIARVISARALQLAMGAPALIDINNISSTDVISIAEEEFKRGVLPITIRRRLPNG 85

[233][TOP]
>UniRef100_Q9HJ14 DNA-directed RNA polymerase subunit K n=1 Tax=Thermoplasma
           acidophilum RepID=RPOK_THEAC
          Length = 61

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 26/52 (50%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 404
           TK+E+ARI+G RALQI+M APV++++ +   DP++IAM E     IP TI++
Sbjct: 4   TKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55

[234][TOP]
>UniRef100_Q2P9V9 RNA polymerase I subunit 1RPB6 n=2 Tax=Trypanosoma brucei
           RepID=Q2P9V9_TRYBB
          Length = 131

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 20/98 (20%)
 Frame = +3

Query: 225 RPRRTSKYMTKYERARILGTRALQISMNAPVMVELE--------------------GETD 344
           + R++S Y+TKYE ARI+G RA QI     V++E +                       D
Sbjct: 26  KDRKSSVYLTKYEVARIIGERARQIVNGTSVLLESQNGCGTGNSLELAEGCADPFAASVD 85

Query: 345 PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 458
           P+ I   EL + +IP  +RR  PDG  E+  V+EL V+
Sbjct: 86  PIHITKLELLQGRIPMIVRRTWPDGRTENIPVNELKVD 123

[235][TOP]
>UniRef100_A1RRU8 DNA-directed RNA polymerase, subunit K n=1 Tax=Pyrobaculum
           islandicum DSM 4184 RepID=A1RRU8_PYRIL
          Length = 109

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
 Frame = +3

Query: 249 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRERKIPFTIRRYLPDG 419
           +TKYE ARI+G RALQ++M A   +++   G TDP+ IA++E R   + F I R  PDG
Sbjct: 34  LTKYEIARIIGARALQLAMGAQPKIDIRELGTTDPVLIALEEFRRGLLDFIIVREFPDG 92

[236][TOP]
>UniRef100_Q2NG01 RpoK n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NG01_METST
          Length = 63

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 26/50 (52%), Positives = 37/50 (74%)
 Frame = +3

Query: 240 SKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIP 389
           S+  T++ERAR++G+RALQISM A  +VE   + DP++IA+KE  E  IP
Sbjct: 3   SRNNTRFERARLIGSRALQISMGANPLVEFTPDQDPIKIAIKEYEEGVIP 52

[237][TOP]
>UniRef100_Q12TI3 DNA-directed RNA polymerase subunit K n=1 Tax=Methanococcoides
           burtonii DSM 6242 RepID=Q12TI3_METBU
          Length = 63

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 26/53 (49%), Positives = 38/53 (71%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYL 410
           T+YERARI+G R+LQI+M AP+++E +  TD L +A  E  +  IP T++R L
Sbjct: 11  TRYERARIIGARSLQIAMGAPILIE-DDNTDALYLATLEFEKGVIPITVKRNL 62

[238][TOP]
>UniRef100_P58232 DNA-directed RNA polymerase subunit K n=1 Tax=Thermoplasma
           volcanium RepID=RPOK_THEVO
          Length = 61

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +3

Query: 252 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRERKIPFTIRR 404
           TK+E+ARI+G RALQI+M APV++++ +   DP++IA  E     IP TI+R
Sbjct: 4   TKFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55