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[1][TOP]
>UniRef100_B9I6T5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6T5_POPTR
Length = 499
Score = 273 bits (697), Expect = 9e-72
Identities = 132/169 (78%), Positives = 155/169 (91%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLP HLHERL LIRNA+ RLEE+G+TP+ID IA++LNM+Q+KVRNATEAI+KVFSLDRE
Sbjct: 331 LRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDRE 390
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T+H+++AD + EN PW GVDEWALKEEVNKLI+ L EREREI+RLY+G
Sbjct: 391 AFPSLNGLPGETHHSYIADNRLENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYHG 450
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LDK+CLTWE+ISKR+GLSRERVRQVGLVALEKLKHAARK +LEAML +H
Sbjct: 451 LDKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGKLEAMLVKH 499
[2][TOP]
>UniRef100_B9SDF8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9SDF8_RICCO
Length = 508
Score = 271 bits (694), Expect = 2e-71
Identities = 131/169 (77%), Positives = 155/169 (91%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLP HLHERL LIRNA+ RLEE+G+TP+ID IA++LN++QKKVRNATEA++KVFSLDRE
Sbjct: 340 LRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDRE 399
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T+H+++AD EN PW GVD+WALK+EVNKLIN+TL ERE+EI+RLYYG
Sbjct: 400 AFPSLNGLPGETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYG 459
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LD + LTWE+ISKRIGLSRERVRQVGLVALEKLKHAARKK+LEAML +H
Sbjct: 460 LDNESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508
[3][TOP]
>UniRef100_B9IPY1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPY1_POPTR
Length = 509
Score = 271 bits (694), Expect = 2e-71
Identities = 130/169 (76%), Positives = 155/169 (91%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLP HLHERL LIRNA+ RLEE+G+TP+ID IA++LNM+Q+KVRNATEAI+KVFSLDRE
Sbjct: 341 LRLPNHLHERLGLIRNAKIRLEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDRE 400
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T+H+++AD + EN PW GVDEWALKEEVNKLI+ TL ERE+EI+RLY+G
Sbjct: 401 AFPSLNGLPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHG 460
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LD++CLTWE+ISKR+GLSRERVRQVGLVALEKLKHAARK+ EAML +H
Sbjct: 461 LDQECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509
[4][TOP]
>UniRef100_UPI0001984E9A PREDICTED: hypothetical protein isoform 2 n=1 Tax=Vitis vinifera
RepID=UPI0001984E9A
Length = 496
Score = 270 bits (689), Expect = 8e-71
Identities = 133/169 (78%), Positives = 154/169 (91%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLP+HLHERLSLIRNA+ RLEE+GITP+ID IA+ LNM+QKKVRNATEAI+KVFSLDRE
Sbjct: 328 LRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDRE 387
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYYG
Sbjct: 388 AFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYG 447
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LD +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK +EAML ++
Sbjct: 448 LDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 496
[5][TOP]
>UniRef100_UPI0001984E99 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera
RepID=UPI0001984E99
Length = 507
Score = 270 bits (689), Expect = 8e-71
Identities = 133/169 (78%), Positives = 154/169 (91%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLP+HLHERLSLIRNA+ RLEE+GITP+ID IA+ LNM+QKKVRNATEAI+KVFSLDRE
Sbjct: 339 LRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDRE 398
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYYG
Sbjct: 399 AFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYG 458
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LD +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK +EAML ++
Sbjct: 459 LDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 507
[6][TOP]
>UniRef100_A7PAZ2 Chromosome chr16 scaffold_10, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PAZ2_VITVI
Length = 486
Score = 270 bits (689), Expect = 8e-71
Identities = 133/169 (78%), Positives = 154/169 (91%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLP+HLHERLSLIRNA+ RLEE+GITP+ID IA+ LNM+QKKVRNATEAI+KVFSLDRE
Sbjct: 318 LRLPSHLHERLSLIRNAKIRLEEKGITPSIDRIAECLNMSQKKVRNATEAISKVFSLDRE 377
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYYG
Sbjct: 378 AFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYYG 437
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LD +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK +EAML ++
Sbjct: 438 LDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 486
[7][TOP]
>UniRef100_Q9SLX3 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX3_TOBAC
Length = 502
Score = 265 bits (677), Expect = 2e-69
Identities = 130/169 (76%), Positives = 151/169 (89%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLP HLHERLSLIRNA+ +L+E GITP+I+ IA+ LNM+QKKVRNATEA +KVFSLDRE
Sbjct: 334 LRLPIHLHERLSLIRNAKIKLKENGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDRE 393
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T H+++AD + ENIPW GVDEW LK+EVN LI+ TL EREREIVRLYYG
Sbjct: 394 AFPSLNGLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYG 453
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LD +CLTWE+IS+RIGLSRERVRQVGLVALEKLKHAARK+ L+AML +H
Sbjct: 454 LDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVKH 502
[8][TOP]
>UniRef100_Q9FPH1 At1g64860 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH1_ARATH
Length = 502
Score = 265 bits (677), Expect = 2e-69
Identities = 127/169 (75%), Positives = 156/169 (92%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLPTHLHERL LIRNA+ RL+E+GITP+ID IA++LNM+QKKVRNATEA++KVFSLDR+
Sbjct: 334 LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRD 393
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYYG
Sbjct: 394 AFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYG 453
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LDK+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 454 LDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[9][TOP]
>UniRef100_O24629 AT1G64860 protein n=2 Tax=Arabidopsis thaliana RepID=O24629_ARATH
Length = 502
Score = 265 bits (677), Expect = 2e-69
Identities = 127/169 (75%), Positives = 156/169 (92%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLPTHLHERL LIRNA+ RL+E+GITP+ID IA++LNM+QKKVRNATEA++KVFSLDR+
Sbjct: 334 LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRD 393
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYYG
Sbjct: 394 AFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYG 453
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LDK+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 454 LDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[10][TOP]
>UniRef100_O22576 RNA polymerase sigma subunit 1 n=1 Tax=Arabidopsis thaliana
RepID=O22576_ARATH
Length = 502
Score = 265 bits (677), Expect = 2e-69
Identities = 127/169 (75%), Positives = 156/169 (92%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLPTHLHERL LIRNA+ RL+E+GITP+ID IA++LNM+QKKVRNATEA++KVFSLDR+
Sbjct: 334 LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRD 393
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYYG
Sbjct: 394 AFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYG 453
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LDK+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 454 LDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[11][TOP]
>UniRef100_O22057 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22057_ARATH
Length = 502
Score = 265 bits (677), Expect = 2e-69
Identities = 127/169 (75%), Positives = 156/169 (92%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLPTHLHERL LIRNA+ RL+E+GITP+ID IA++LNM+QKKVRNATEA++KVFSLDR+
Sbjct: 334 LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRD 393
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYYG
Sbjct: 394 AFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYG 453
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LDK+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 454 LDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[12][TOP]
>UniRef100_O49935 Sig1 protein n=1 Tax=Sinapis alba RepID=O49935_SINAL
Length = 481
Score = 264 bits (674), Expect = 4e-69
Identities = 126/169 (74%), Positives = 156/169 (92%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLPTHLHERL LIRNA+ RL+E+GITP+ID IA++LNM+QKKVRNATEA++K+FSLDR+
Sbjct: 313 LRLPTHLHERLGLIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKIFSLDRD 372
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T+H+++AD + EN PW G D ALK+EV+KLI+VTL EREREI+RLYYG
Sbjct: 373 AFPSLNGLPGETHHSYIADNRLENNPWHGYDALALKDEVSKLISVTLGEREREIIRLYYG 432
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
LDK+CLTWE+IS+RIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 433 LDKECLTWEDISQRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 481
[13][TOP]
>UniRef100_Q9SLX4 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX4_TOBAC
Length = 508
Score = 259 bits (663), Expect = 8e-68
Identities = 126/168 (75%), Positives = 151/168 (89%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
LRLPT+LHERLSLIRNA+ RLEE+GITP+++ IA +LNM+QKKVRNATEA +K++SLDRE
Sbjct: 340 LRLPTYLHERLSLIRNAKARLEEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDRE 399
Query: 398 TFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYG 219
FPSLNGLPG+T H+++AD EN PW GVD WALK+EVN LI+ TL +REREI+RLYYG
Sbjct: 400 AFPSLNGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYG 459
Query: 218 LDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 75
LD +CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK++L+AML +
Sbjct: 460 LDNECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQLDAMLIK 507
[14][TOP]
>UniRef100_Q7EY08 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
Japonica Group RepID=Q7EY08_ORYSJ
Length = 388
Score = 232 bits (592), Expect = 1e-59
Identities = 109/168 (64%), Positives = 142/168 (84%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PTI+ IA +LN+++KKV NATEA+NKV SLD++
Sbjct: 221 RLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQA 280
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+
Sbjct: 281 FPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGI 340
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 341 GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 388
[15][TOP]
>UniRef100_Q0J7T6 Os08g0163400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0J7T6_ORYSJ
Length = 520
Score = 232 bits (592), Expect = 1e-59
Identities = 109/168 (64%), Positives = 142/168 (84%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PTI+ IA +LN+++KKV NATEA+NKV SLD++
Sbjct: 353 RLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQA 412
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+
Sbjct: 413 FPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGI 472
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 473 GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 520
[16][TOP]
>UniRef100_O48655 Plastid RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=O48655_ORYSJ
Length = 519
Score = 232 bits (592), Expect = 1e-59
Identities = 109/168 (64%), Positives = 142/168 (84%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PTI+ IA +LN+++KKV NATEA+NKV SLD++
Sbjct: 352 RLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQA 411
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+
Sbjct: 412 FPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGI 471
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 472 GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 519
[17][TOP]
>UniRef100_A3BPX7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BPX7_ORYSJ
Length = 420
Score = 232 bits (592), Expect = 1e-59
Identities = 109/168 (64%), Positives = 142/168 (84%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PTI+ IA +LN+++KKV NATEA+NKV SLD++
Sbjct: 253 RLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQA 312
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+
Sbjct: 313 FPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGI 372
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 373 GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 420
[18][TOP]
>UniRef100_Q7EY07 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
RepID=Q7EY07_ORYSJ
Length = 342
Score = 232 bits (592), Expect = 1e-59
Identities = 109/168 (64%), Positives = 142/168 (84%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PTI+ IA +LN+++KKV NATEA+NKV SLD++
Sbjct: 175 RLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQA 234
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+G+
Sbjct: 235 FPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHGI 294
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 295 GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 342
[19][TOP]
>UniRef100_C5YHG2 Putative uncharacterized protein Sb07g004340 n=1 Tax=Sorghum
bicolor RepID=C5YHG2_SORBI
Length = 500
Score = 229 bits (583), Expect = 2e-58
Identities = 109/168 (64%), Positives = 141/168 (83%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PT++ IA++LN+++KKV NATEA+NKV SLD++
Sbjct: 333 RLPTYLHERLIAIRGAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVNKVLSLDQQA 392
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN TL ERER+I+RLY+G+
Sbjct: 393 FPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYHGI 452
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR+K L+A+L E+
Sbjct: 453 GKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLDALLEEY 500
[20][TOP]
>UniRef100_O24348 Plastid RNA polymerase sigma factor n=1 Tax=Sorghum bicolor
RepID=O24348_SORBI
Length = 500
Score = 227 bits (578), Expect = 6e-58
Identities = 108/168 (64%), Positives = 140/168 (83%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PT++ IA++LN+++KKV NATEA+NKV SLD++
Sbjct: 333 RLPTYLHERLIAIRGAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVNKVLSLDQQA 392
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN L ERER+I+RLY+G+
Sbjct: 393 FPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNNLINSNLNERERDIIRLYHGI 452
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR+K L+A+L E+
Sbjct: 453 GKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLDALLEEY 500
[21][TOP]
>UniRef100_Q9ZTI3 RNA polymerase sigma factor 1 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI3_MAIZE
Length = 398
Score = 225 bits (574), Expect = 2e-57
Identities = 107/168 (63%), Positives = 141/168 (83%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PT++ IA++LN+++KKV NATEA++KV SLD++
Sbjct: 231 RLPTYLHERLVAIRGAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVHKVISLDQQA 290
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN TL ERER+I+RLY+G+
Sbjct: 291 FPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGI 350
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR++ L+A+L E+
Sbjct: 351 GKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARREHLDALLEEY 398
[22][TOP]
>UniRef100_B4FP19 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FP19_MAIZE
Length = 496
Score = 225 bits (574), Expect = 2e-57
Identities = 107/168 (63%), Positives = 141/168 (83%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PT++ IA++LN+++KKV NATEA++KV SLD++
Sbjct: 329 RLPTYLHERLVAIRGAKYALEDQGIAPTVENIAESLNISEKKVHNATEAVHKVISLDQQA 388
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN TL ERER+I+RLY+G+
Sbjct: 389 FPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYHGI 448
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR++ L+A+L E+
Sbjct: 449 GKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARREHLDALLEEY 496
[23][TOP]
>UniRef100_Q9ZP70 Chloroplast sigma factor (Fragment) n=1 Tax=Triticum aestivum
RepID=Q9ZP70_WHEAT
Length = 461
Score = 223 bits (568), Expect = 8e-57
Identities = 103/168 (61%), Positives = 138/168 (82%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++G++PT IAK LN+++KKV NATEA+NK SLD++
Sbjct: 294 RLPTYLHERLIAIRGAKYALEDQGVSPTTQNIAKLLNISEKKVHNATEAVNKALSLDQQA 353
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPGDT H+++ D+ N PW G +EW LKEEVNKL+N L ERER+I++LY+G+
Sbjct: 354 FPSLNGLPGDTLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYHGI 413
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQVGL+A+EKLK AR+K+L+A+L ++
Sbjct: 414 GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKQRARRKKLDALLQDY 461
[24][TOP]
>UniRef100_Q9ZTI2 RNA polymerase sigma factor 2 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI2_MAIZE
Length = 349
Score = 219 bits (559), Expect = 9e-56
Identities = 106/168 (63%), Positives = 137/168 (81%)
Frame = -3
Query: 575 RLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRET 396
RLPT+LHERL IR A+Y LE++GI PTI+ IA++LN++ KKV NATEA++KV SLD++
Sbjct: 182 RLPTYLHERLLAIRGAKYALEDQGIAPTIENIAESLNISVKKVHNATEAVHKVLSLDQQA 241
Query: 395 FPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL 216
FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN L ERER+I+RLY+G+
Sbjct: 242 FPSLNGLPGDTLHSYIEDQNVANDPWHGFEEMYLKEEVNNLINSNLNERERDIIRLYHGI 301
Query: 215 DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 72
K+C TWE+IS++ GLSRERVRQV LVA+EKLKHAAR+K L A+L ++
Sbjct: 302 GKQCHTWEDISRQFGLSRERVRQVRLVAMEKLKHAARRKHLNALLEDY 349
[25][TOP]
>UniRef100_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens
RepID=A9SW01_PHYPA
Length = 677
Score = 119 bits (299), Expect = 1e-25
Identities = 67/170 (39%), Positives = 104/170 (61%), Gaps = 4/170 (2%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDRE 399
+RLP H+H+ L IR A+ L G T ++ I++ N+T K++N + K+ SLD+E
Sbjct: 504 VRLPVHVHDTLGRIRKAKSTLLSEGCTASVQEISEATNLTGTKIKNTLQVTKKLVSLDKE 563
Query: 398 TFPS-LNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ L G+T H+ VAD+ EN PW V+ +K++V+KL+ L RER+IVRL+Y
Sbjct: 564 IGRNTLQSGDGETLHSLVADRDIENQPWTIVERMLMKDDVDKLLTSQLGPRERDIVRLHY 623
Query: 221 GL---DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D ++ E IS R G+SRERVRQ+ A+ KL+ +R++ L+ L
Sbjct: 624 GVGREDGSVMSLESISYRYGVSRERVRQLETAAMRKLQIKSREQGLDRYL 673
[26][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 90.9 bits (224), Expect = 6e-17
Identities = 58/169 (34%), Positives = 103/169 (60%), Gaps = 3/169 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYR-LEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ + Q + L++ G P+I+ IA+ +N+++KK + E + + SL+
Sbjct: 111 IRIPVHMVESVNKLLKIQKQFLQKLGREPSIEEIAEEMNISEKKAKVLLEIVQGIVSLEE 170
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
NG GD +ADK++ + P ++ LKE+V+++++ TL RE +++RL +
Sbjct: 171 PVGEDENGKLGD----IIADKEAVD-PVEELESMLLKEQVDEVLS-TLAPREEKVLRLRF 224
Query: 221 GLDK-KCLTWEEISKRIG-LSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD K T EE+ K +G +SRERVRQ+ AL++L+H R + L+ L
Sbjct: 225 GLDDGKIRTLEEVGKELGGISRERVRQIETKALKRLRHPNRSRRLKEFL 273
[27][TOP]
>UniRef100_Q1PW65 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1PW65_9BACT
Length = 551
Score = 90.1 bits (222), Expect = 1e-16
Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E +S IRN +L +++G PTI+ IA+ + ++ + R + SLDR
Sbjct: 383 IRIPVHMIETMSKIRNISKKLLQDKGREPTIEEIAREVKISVPEARRVLKISRHQISLDR 442
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
S + GD F+ D+++E+ P + LK+++ ++ TL REREI++L Y
Sbjct: 443 PVGESEDSSFGD----FIEDEKAES-PVAAATQEMLKDKIESVLE-TLTYREREIIKLRY 496
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D T EE+ K ++RERVRQ+ A+ KL+H R ++LE L
Sbjct: 497 GIGDGYTYTLEEVGKIFKVTRERVRQIEAKAVRKLQHPIRSRKLEGFL 544
[28][TOP]
>UniRef100_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV14_SULAA
Length = 282
Score = 88.2 bits (217), Expect = 4e-16
Identities = 68/169 (40%), Positives = 100/169 (59%), Gaps = 3/169 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P +S ++NA +L+E G PT + IAK L + KKV+NA + + SLD
Sbjct: 118 VRIPIKESLFISKVKNAYEKLKESLGREPTEEEIAKELKTSVKKVKNALAIVRQPISLD- 176
Query: 401 ETFPSLNGLPGD-TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
P G D T + ++ K +E++ V+ LKEE +L+NV L EREREI++L
Sbjct: 177 --MPLGEGGEEDFTLLDILSKKGTEDVEKDLVES-TLKEEFERLLNV-LDEREREIIKLR 232
Query: 224 YGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
YGL+ + T EE+ + +G+SRERVRQ+ AL+KLK A KK L+ L
Sbjct: 233 YGLEGLEPKTLEEVGEMLGISRERVRQLEQRALKKLKAVALKKHLQNFL 281
[29][TOP]
>UniRef100_C1ZAZ0 RNA polymerase sigma factor n=1 Tax=Planctomyces limnophilus DSM
3776 RepID=C1ZAZ0_PLALI
Length = 550
Score = 86.3 bits (212), Expect = 2e-15
Identities = 60/178 (33%), Positives = 99/178 (55%), Gaps = 2/178 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E +S +R A+ L+E G PT++ A+ ++ ++ R + SLDR
Sbjct: 380 IRIPVHMIETMSKLRKVAKKLLQEMGREPTLEETAEAAGVSLEETRRVMKISRHPISLDR 439
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
S + GD F+ D +E+ P + + LK++++ ++ TL REREI++L Y
Sbjct: 440 PVGESEDSYFGD----FIEDDNTES-PVMAATQEMLKDKIDNVLK-TLTYREREIIKLRY 493
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH*YDGLII 51
GL D T EE+ + ++RERVRQ+ A+ KL+H R K+L+ L DGL+I
Sbjct: 494 GLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKGFL-----DGLMI 546
[30][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 84.3 bits (207), Expect = 6e-15
Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G P+ + IAK +N+T+ KVR + + SL+
Sbjct: 201 IRIPVHMVETINKLVRVQRQLLQELGRDPSPEEIAKEMNITEDKVREILKIAQEPVSLET 260
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E + L+E++++++ TL ERE+ ++RL +
Sbjct: 261 PIGEEEDSHLGDFIEDHEARAPAEEASFT-----LLREQLDEVLK-TLTEREQRVLRLRF 314
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ ++ G++RER+RQ+ L KL+H +R K+L+ L
Sbjct: 315 GLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 362
[31][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 84.0 bits (206), Expect = 8e-15
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IAK +++T KVR + + SL+
Sbjct: 163 IRIPVHMVETINKLIRVSRQLLQEIGREPTPEEIAKEMDLTPDKVREIMKIAQEPVSLET 222
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E + LKE++ ++++ TL ERE ++RL +
Sbjct: 223 PIGEENDSNLGDFIEDHDAPAPAEAAAYE-----LLKEQLEEVLD-TLTEREENVLRLRF 276
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
G+D + T EE+ K G++RER+RQ+ AL KL+H +R K L+
Sbjct: 277 GMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKRLK 321
[32][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
DSM 12112 RepID=C4DZ35_9FUSO
Length = 379
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNA-QYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ A + L+E G PT D +A+ + M +KV+N E SL+
Sbjct: 216 IRIPVHMIETINKIKKASRIHLQETGKEPTDDYLAEIVEMPVEKVKNILEMNQDPISLET 275
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D + N P LKE++N ++ L ERE +++RL Y
Sbjct: 276 PVGSEDDSELGD----FVEDDKFLN-PHEATVRSVLKEKLNDVLRKELNEREEQVLRLRY 330
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + A+ KLK+ +KK LE
Sbjct: 331 GLDDGAPKTLEEVGKIFDVTRERIRQIEVKAINKLKNIKKKKGLE 375
[33][TOP]
>UniRef100_A3ZZZ4 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645
RepID=A3ZZZ4_9PLAN
Length = 567
Score = 84.0 bits (206), Expect = 8e-15
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ + LS +RN Q RL +E PT+D IA+ + ++VR + + SLDR
Sbjct: 400 IRIPVHMIDVLSKLRNVQKRLLQELRREPTMDEIARRAEIDLEEVRRVMDIGRQPVSLDR 459
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
S + G+ F+ D E P L++ + L+ TL REREI++L Y
Sbjct: 460 PIGESEDSSFGE----FIEDSHEET-PIRSASNQILRDRIQGLLK-TLTYREREIIKLRY 513
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D T EE+ + ++RERVRQ+ A+ KL+H R ++LE L
Sbjct: 514 GLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSQQLEGFL 561
[34][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UQQ5_9AQUI
Length = 571
Score = 83.6 bits (205), Expect = 1e-14
Identities = 60/166 (36%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I A RL +E G PT + IAK+L MT KVR + + SL+
Sbjct: 409 IRIPVHMIETINRIIKASKRLFQELGREPTPEEIAKHLGMTPDKVRKVLRSAQEPISLET 468
Query: 401 ETFPSLNGLPGDTY-HNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
G DT+ +F+ DK N P V L+E++ +++ TL ++EREI+R
Sbjct: 469 PI-----GDDEDTFLKDFIEDKSVPN-PEEYVSRKLLREQLERVLE-TLSDKEREILRYR 521
Query: 224 YGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
YGL D T E++ K ++RER+RQ+ A+ KL+H +R K L+
Sbjct: 522 YGLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKLRHPSRAKYLK 567
[35][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
18311 RepID=Q5M3E3_STRT2
Length = 369
Score = 83.2 bits (204), Expect = 1e-14
Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L+
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[36][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 83.2 bits (204), Expect = 1e-14
Identities = 56/168 (33%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IAK + +++ KVR + + SL+
Sbjct: 208 IRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D ++ P L+E++++++ TL ERE++++RL +
Sbjct: 268 PIGEEEDSHLGD----FVEDPDAK-APVEEASYTLLREQLDEVLK-TLTEREQKVLRLRF 321
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 322 GLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
[37][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
RepID=Q03JL2_STRTD
Length = 369
Score = 83.2 bits (204), Expect = 1e-14
Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L+
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[38][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
RepID=Q3D699_STRAG
Length = 369
Score = 83.2 bits (204), Expect = 1e-14
Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L+
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[39][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
RepID=Q3CZ52_STRAG
Length = 369
Score = 83.2 bits (204), Expect = 1e-14
Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L+
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[40][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
RepID=C2LRD4_STRSL
Length = 369
Score = 83.2 bits (204), Expect = 1e-14
Identities = 55/165 (33%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L+
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[41][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 83.2 bits (204), Expect = 1e-14
Identities = 59/165 (35%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLE-ERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP HL++ +S IR L E G +PT + IAK ++M+ +K+RN ++ SL+R
Sbjct: 263 IRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLER 322
Query: 401 ETFPSLNGLPGDTYHNFV-ADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
P N +F+ AD++S P V++ L++++ +IN +L RER++VR+
Sbjct: 323 ---PLKNDDDTSQLSDFIEADQES---PEEHVEKSMLRDDLENVIN-SLSPRERDVVRMR 375
Query: 224 YGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
YGLD + T EEI + ++RERVRQ+ A+ KL+ R L
Sbjct: 376 YGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSIL 420
[42][TOP]
>UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfotomaculum acetoxidans DSM 771
RepID=C8W3K2_9FIRM
Length = 359
Score = 82.8 bits (203), Expect = 2e-14
Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK +N+T+ KVR + + SL+
Sbjct: 197 IRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAKEMNITEDKVREIMKIAQEPVSLET 256
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E + L+E+++ ++ TL +RE++++RL +
Sbjct: 257 PIGEEEDSHLGDFIEDHDARAPAEEASFT-----LLREQLDDVLK-TLTDREQKVLRLRF 310
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ ++ G++RER+RQ+ L KL+H +R K+L+ L
Sbjct: 311 GLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 358
[43][TOP]
>UniRef100_C5NX65 RNA polymerase sigma factor n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NX65_9BACL
Length = 361
Score = 82.8 bits (203), Expect = 2e-14
Identities = 54/168 (32%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P + IAK +NMT +KVR + + SL+
Sbjct: 199 IRIPVHMVETINRLIRIQRQLLQDLGREPKPEEIAKKMNMTPEKVREILKIAQEPVSLET 258
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK++++ +E LKE++ +++ TL +RE +++L +
Sbjct: 259 PIGEEDDSHLGD----FIEDKEAQSPVEHAANE-LLKEQLEEILE-TLTDREENVLKLRF 312
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D K T EE+ G++RER+RQ+ A+ KLKH ++ +L+ +
Sbjct: 313 GLKDGKTHTLEEVGSAFGVTRERIRQIEAKAIRKLKHPSKLNKLKGFM 360
[44][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
Length = 369
Score = 82.8 bits (203), Expect = 2e-14
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[45][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 82.4 bits (202), Expect = 2e-14
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IAK + ++ KVR + + SL+
Sbjct: 213 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMELSTDKVREIMKIAQEPVSLET 272
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL ERE ++RL +
Sbjct: 273 PI-----GEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLD-TLTEREENVLRLRF 326
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 327 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[46][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M18 RepID=Q8P1I9_STRP8
Length = 369
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ + MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[47][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M3 RepID=Q8K811_STRP3
Length = 369
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ + MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[48][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
Length = 369
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ + MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[49][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
zooepidemicus H70 RepID=C0MGY0_STRS7
Length = 369
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ + MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[50][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
4047 RepID=C0M883_STRE4
Length = 369
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ + MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[51][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
RepID=B9DRV6_STRU0
Length = 369
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ + MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[52][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
zooepidemicus MGCS10565 RepID=B4U2H7_STREM
Length = 369
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ + MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[53][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
RepID=A2RFA3_STRPG
Length = 369
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ + MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMEMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[54][TOP]
>UniRef100_A4VWA5 RNA polymerase sigma factor n=6 Tax=Streptococcus suis
RepID=A4VWA5_STRSY
Length = 372
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT +KVR + + SL+
Sbjct: 209 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPEKVREILKIAQEPVSLET 268
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 269 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 322
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K L
Sbjct: 323 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPL 366
[55][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 82.4 bits (202), Expect = 2e-14
Identities = 57/168 (33%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA +++T +KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMDLTPEKVREIQKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D ++ P LKE++ +++ TL ERE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIPDDEAP-APADAAAYELLKEQLEDVLD-TLTEREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 320 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 367
[56][TOP]
>UniRef100_O33662 RNA polymerase sigma factor rpoD n=2 Tax=Streptococcus mutans
RepID=RPOD_STRMU
Length = 371
Score = 82.4 bits (202), Expect = 2e-14
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 208 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 268 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 321
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K+L
Sbjct: 322 GLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRKLRHPSRSKQL 365
[57][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 82.0 bits (201), Expect = 3e-14
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+ +++T +KVR + + SL+
Sbjct: 212 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPVSLET 271
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE+ + LKE++ +++ TL +RE ++RL +
Sbjct: 272 PIGEEDDSHLGDFIEDQEATSPSEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 325
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 326 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[58][TOP]
>UniRef100_B2VA41 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2VA41_SULSY
Length = 281
Score = 82.0 bits (201), Expect = 3e-14
Identities = 62/169 (36%), Positives = 100/169 (59%), Gaps = 3/169 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P ++ ++ +L EE G PT + IAK LN + KKV+NA + SLD
Sbjct: 117 VRIPVKESLFIAKVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLD- 175
Query: 401 ETFPSLNGLPGD-TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
P G D T + ++ K +E+I ++E + +E+ +++V L ERE+EI+++
Sbjct: 176 --MPLGEGGEEDFTLLDVLSKKGTEDIEKELIEE-TIHKELESMLDV-LDEREKEIIKMR 231
Query: 224 YGLD-KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
YGLD ++ T EE+ +++G+SRERVRQ+ AL+KLK A KK L+ L
Sbjct: 232 YGLDGEEPKTLEEVGEKLGISRERVRQLEQRALKKLKAVALKKHLKDFL 280
[59][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 82.0 bits (201), Expect = 3e-14
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+ +++T +KVR + + SL+
Sbjct: 215 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPVSLET 274
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE+ + LKE++ +++ TL +RE ++RL +
Sbjct: 275 PIGEEDDSHLGDFIEDQEATSPSEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 328
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 329 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[60][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 82.0 bits (201), Expect = 3e-14
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+ +++T +KVR + + SL+
Sbjct: 213 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPVSLET 272
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE+ + LKE++ +++ TL +RE ++RL +
Sbjct: 273 PIGEEDDSHLGDFIEDQEATSPSEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 326
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 327 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[61][TOP]
>UniRef100_UPI0001BB55B2 RNA polymerase sigma factor RpoD n=1 Tax=Streptococcus sp.
2_1_36FAA RepID=UPI0001BB55B2
Length = 370
Score = 81.6 bits (200), Expect = 4e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 207 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 267 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 320
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K L
Sbjct: 321 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPL 364
[62][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 81.6 bits (200), Expect = 4e-14
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I+K + +T +KVR + + SL+
Sbjct: 199 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEISKEMEITPEKVREILKIAQEPVSLET 258
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 259 PI-----GEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLEDVLD-TLTDREENVLRLRF 312
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 313 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 360
[63][TOP]
>UniRef100_A8AXP5 RNA polymerase sigma factor n=1 Tax=Streptococcus gordonii str.
Challis RepID=A8AXP5_STRGC
Length = 370
Score = 81.6 bits (200), Expect = 4e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 207 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 267 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 320
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K L
Sbjct: 321 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPL 364
[64][TOP]
>UniRef100_A3CM49 RNA polymerase sigma factor n=1 Tax=Streptococcus sanguinis SK36
RepID=A3CM49_STRSV
Length = 370
Score = 81.6 bits (200), Expect = 4e-14
Identities = 55/164 (33%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 207 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 267 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRF 320
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+H +R K L
Sbjct: 321 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPL 364
[65][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
RepID=C6JGK6_9FIRM
Length = 375
Score = 81.6 bits (200), Expect = 4e-14
Identities = 57/171 (33%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IAK ++M+ ++VR + + SL+
Sbjct: 213 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMDMSVERVREILKISQEPVSLET 272
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + D A LKE++ ++++ TL +RE++++R
Sbjct: 273 PIGEEEDSHLGD----FIQD---DNVP-VPADAAAFTLLKEQLVEVLS-TLTDREQKVLR 323
Query: 230 LYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GLD + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 324 LRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 374
[66][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 81.6 bits (200), Expect = 4e-14
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+ +++T +KVR + + SL+
Sbjct: 213 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEEMDLTPEKVREILKIAQEPVSLET 272
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE+ + LKE++ +++ TL +RE ++RL +
Sbjct: 273 PIGEEDDSHLGDFIEDQDATSPSEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 326
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 327 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[67][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 81.6 bits (200), Expect = 4e-14
Identities = 54/168 (32%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E+G PT + IA+ ++++ ++VR + + SL+
Sbjct: 206 IRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIAREMDISVERVREIMKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D Q P LKE++ +++ TL RE +++RL +
Sbjct: 266 PIGEEEDSHLGD----FIED-QDAPAPAEAASFMLLKEQLEEVLE-TLTPREEKVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 320 GLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 367
[68][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 81.3 bits (199), Expect = 5e-14
Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+++++T +KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A S++ + LKE++ +++ TL +RE ++RL +
Sbjct: 271 PIGEEDDSHLGDFIEDQEATSPSDHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 325 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[69][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 81.3 bits (199), Expect = 5e-14
Identities = 55/168 (32%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ L+E+G PT + IAK +NM +KVR + + SL+
Sbjct: 255 IRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLET 314
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE + LKE++ ++++ +L ERE+++++L +
Sbjct: 315 PIGEEEDSHLGDFIPDDDALAPSEAAAYS-----MLKEQLLEVLD-SLNEREKKVLKLRF 368
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 369 GLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
[70][TOP]
>UniRef100_B1XMU3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=B1XMU3_SYNP2
Length = 398
Score = 81.3 bits (199), Expect = 5e-14
Identities = 54/161 (33%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEE-RGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E+L+ I+ AQ ++ + +G TP++D +A+ L MT ++VR + + + SL+
Sbjct: 234 IRLPVHVTEKLNKIKKAQRQISQTQGCTPSLDDVAQALEMTPEQVREVLQKVPRSVSLEI 293
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G DT + + Q + P + +L+ +++ L+ L +RERE+++L Y
Sbjct: 294 RV-----GKDRDTELGDLLETQDAS-PEENLVRESLQRDLHNLLT-ELTDREREVIQLRY 346
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARK 102
GL D K + EI + + LSRERVRQ+ AL+KL+ R+
Sbjct: 347 GLGDGKTYSLAEIGRMLELSRERVRQIEAKALQKLRQPKRR 387
[71][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 81.3 bits (199), Expect = 5e-14
Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+++++T +KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A S++ + LKE++ +++ TL +RE ++RL +
Sbjct: 271 PIGEEDDSHLGDFIEDQEATSPSDHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 325 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[72][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 81.3 bits (199), Expect = 5e-14
Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+++++T +KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A S++ + LKE++ +++ TL +RE ++RL +
Sbjct: 271 PIGEEDDSHLGDFIEDQEATSPSDHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 325 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[73][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 81.3 bits (199), Expect = 5e-14
Identities = 55/168 (32%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ L+E+G PT + IAK +NM +KVR + + SL+
Sbjct: 249 IRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLET 308
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE + LKE++ ++++ +L ERE+++++L +
Sbjct: 309 PIGEEEDSHLGDFIPDDDALAPSEAAAYS-----MLKEQLLEVLD-SLNEREKKVLKLRF 362
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 363 GLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 410
[74][TOP]
>UniRef100_A0LHK2 RNA polymerase sigma factor n=1 Tax=Syntrophobacter fumaroxidans
MPOB RepID=A0LHK2_SYNFM
Length = 599
Score = 81.3 bits (199), Expect = 5e-14
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++E G PT + IA+ + +KVR + + SL+
Sbjct: 436 IRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMEFPVEKVRKVLKIAKEPISLET 495
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK+ + P V L E+ K + TL RE +++R+ +
Sbjct: 496 PIGEEEDSHLGD----FIEDKRVAS-PVDAVINLNLSEQTRKAL-ATLTPREEKVLRMRF 549
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ + ++RER+RQ+ AL KL+H +R+KEL++ +
Sbjct: 550 GIGEKADHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRRKELKSFI 597
[75][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 81.3 bits (199), Expect = 5e-14
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+++++T KVR + + SL+
Sbjct: 212 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPDKVREILKIAQEPVSLET 271
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE+ + LKE++ +++ TL +RE ++RL +
Sbjct: 272 PIGEEDDSHLGDFIEDQDATSPSEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 325
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 326 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[76][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 81.3 bits (199), Expect = 5e-14
Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+++++T +KVR + + SL+
Sbjct: 209 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTPEKVREILKIAQEPVSLET 268
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A S++ + LKE++ +++ TL +RE ++RL +
Sbjct: 269 PIGEEDDSHLGDFIEDQEATSPSDHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 322
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 323 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 370
[77][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 80.9 bits (198), Expect = 7e-14
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P+ + IAK + +T +KVR + + SL+
Sbjct: 202 IRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAKEMELTPEKVREILKIAQEPVSLET 261
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 262 PI-----GEEDDSHLGDFIEDQDAMAPQDAAAYELLKEQLEDVLD-TLTDREENVLRLRF 315
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 316 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 363
[78][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MZ09_9FUSO
Length = 392
Score = 80.9 bits (198), Expect = 7e-14
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G PT + +A+ L + +KV++ E SL+
Sbjct: 230 IRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLET 289
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D + N P+ LKE++++++ TL ERE ++R Y
Sbjct: 290 PVGSEEDSELGD----FVEDDKFAN-PYDATTRVLLKEQLDEVLK-TLNEREEMVLRYRY 343
Query: 221 GLDKKCL-TWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 344 GLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRRKKLE 388
[79][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
Length = 392
Score = 80.9 bits (198), Expect = 7e-14
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G PT + +A+ L + +KV++ E SL+
Sbjct: 230 IRIPVHMIETINKIKKESRIILQETGKEPTAEELAEKLELPVEKVKSILEMNQDPISLET 289
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D + N P+ LKE++++++ TL ERE ++R Y
Sbjct: 290 PVGSEEDSELGD----FVEDDKFAN-PYDATTRILLKEQLDEVLK-TLNEREEMVLRYRY 343
Query: 221 GLDKKCL-TWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 344 GLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRRKKLE 388
[80][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 80.9 bits (198), Expect = 7e-14
Identities = 54/168 (32%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA L+M ++VR + + SL+
Sbjct: 220 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVERVREILKISQEPVSLET 279
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE+++++++ TL ERE++++RL +
Sbjct: 280 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRF 333
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 334 GMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 381
[81][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 80.5 bits (197), Expect = 9e-14
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ L+E G PT + I K ++++ +KVR + + SL+
Sbjct: 154 IRIPVHMVETINKLVRVSRQLLQELGREPTPEEIGKEMDISPEKVREIQKVSQEPVSLET 213
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D Q P LKE++ ++++ TL ERE ++RL +
Sbjct: 214 PVGEESDSNLGD----FIED-QDALAPADAAAFELLKEQLEEVLD-TLTEREENVLRLRF 267
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ + G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 268 GLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 315
[82][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 80.5 bits (197), Expect = 9e-14
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L E G PT + IAK + ++ KVR + + SL+
Sbjct: 205 IRIPVHMVETINKLIRVSRQLLLELGREPTPEEIAKEMELSTDKVREIMKISQEPVSLET 264
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D Q P LKE++ +++ TL ERE ++RL +
Sbjct: 265 PIGEENDSNLGD----FIED-QDALAPADAASYELLKEQLEHVLD-TLTEREENVLRLRF 318
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 319 GLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 366
[83][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 80.5 bits (197), Expect = 9e-14
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L+E G PT + +AK + M ++KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRVQRQLLQELGREPTPEELAKEMGMPEEKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P LKE++ +++ TL RE +++RL +
Sbjct: 270 PIGEEEDSHLGD----FIPDEDAP-APAEAAAYTMLKEQLMDVLD-TLTPREEKVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 324 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 371
[84][TOP]
>UniRef100_C4ZEX0 RNA polymerase sigma factor n=1 Tax=Eubacterium rectale ATCC 33656
RepID=C4ZEX0_EUBR3
Length = 434
Score = 80.5 bits (197), Expect = 9e-14
Identities = 57/171 (33%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P+ + IAK +NM ++VR + + SL+
Sbjct: 272 IRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAKEMNMPVERVREILKISQEPVSLET 331
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + D A LKE++ +++ TL ERE++++
Sbjct: 332 PIGEEEDSHLGD----FIKD---DNVP-VPADAAAFTLLKEQLEEVLG-TLTEREQKVLT 382
Query: 230 LYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GL D + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 383 LRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 433
[85][TOP]
>UniRef100_B2KBW8 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191
RepID=B2KBW8_ELUMP
Length = 571
Score = 80.5 bits (197), Expect = 9e-14
Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E +S + + +E G P+++ +K+L ++ +KV+ + + SL
Sbjct: 408 IRIPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLSMEKVKGVLKIMQDPISLST 467
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ +F+ DK N P + ++ K+EV++++N TL ERE +I+RL +
Sbjct: 468 PVGEDEDS----NLEDFIEDKAGAN-PTVTASDFLRKQEVSEVLN-TLSEREAKIIRLRF 521
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
G+D T EE+ K ++RERVRQ+ A+ KL+H +R K L+
Sbjct: 522 GIDSGYPRTLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKMLK 566
[86][TOP]
>UniRef100_A9B077 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B077_HERA2
Length = 386
Score = 80.5 bits (197), Expect = 9e-14
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E +S ++ ++L++ PT + IA+ + +T KVR EA SL+
Sbjct: 224 IRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIAEAMGITASKVRRTLEASMHPLSLEM 283
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G GD F+ D + P L+E++ +++ L ERER+I++L Y
Sbjct: 284 PVGQEGEGRMGD----FIEDDRVST-PVDAAAMTMLREQIEEVLQ-KLPERERKIIQLRY 337
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ G++RER+RQ+ VAL KL+H K+L L
Sbjct: 338 GLKDGRYRTLEEVGLEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 385
[87][TOP]
>UniRef100_P96035 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
RepID=P96035_SYNSP
Length = 398
Score = 80.5 bits (197), Expect = 9e-14
Identities = 53/161 (32%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEE-RGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E+L+ I+ AQ ++ + +G TP++D +A+ L MT ++VR + + + SL+
Sbjct: 234 IRLPVHVTEKLNKIKKAQRQISQTQGCTPSLDDVAQALEMTPEQVREVLQKVPRSVSLEI 293
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G DT + + Q + P + +L+ +++ L+ L +RERE+++L Y
Sbjct: 294 RV-----GKDRDTELGDLLETQDAS-PEENLVRESLQRDLHNLLT-ELTDREREVIQLRY 346
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARK 102
GL D K + EI + + +SRERVRQ+ AL+KL+ R+
Sbjct: 347 GLGDGKTYSLAEIGRMLDVSRERVRQIEAKALQKLRQPKRR 387
[88][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
10507 RepID=C0CQD9_9FIRM
Length = 374
Score = 80.5 bits (197), Expect = 9e-14
Identities = 57/171 (33%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IAK + M+ +VR + + SL+
Sbjct: 212 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMEMSVDRVREILKISQEPVSLET 271
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + D A LKE++ ++++ TL +RE++++R
Sbjct: 272 PIGEEEDSHLGD----FIQD---DNVP-VPADAAAFTLLKEQLVEVLS-TLTDREQKVLR 322
Query: 230 LYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GLD + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 323 LRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 373
[89][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 80.5 bits (197), Expect = 9e-14
Identities = 54/168 (32%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA L+M ++VR + + SL+
Sbjct: 208 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVERVREILKISQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE+++++++ TL ERE++++RL +
Sbjct: 268 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRF 321
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 322 GMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 369
[90][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 80.5 bits (197), Expect = 9e-14
Identities = 54/168 (32%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA L+M ++VR + + SL+
Sbjct: 209 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAQLDMPVERVREILKISQEPVSLET 268
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE+++++++ TL ERE++++RL +
Sbjct: 269 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRF 322
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 323 GMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
[91][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 80.5 bits (197), Expect = 9e-14
Identities = 54/168 (32%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK L+M ++VR + + SL+
Sbjct: 209 IRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAKELDMPVERVREILKISQEPVSLET 268
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE+++++++ TL ERE++++RL +
Sbjct: 269 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRF 322
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 323 GMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
[92][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 80.5 bits (197), Expect = 9e-14
Identities = 54/168 (32%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA L+M ++VR + + SL+
Sbjct: 207 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVERVREILKISQEPVSLET 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE+++++++ TL ERE++++RL +
Sbjct: 267 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRF 320
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 321 GMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 368
[93][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 80.5 bits (197), Expect = 9e-14
Identities = 54/168 (32%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK L+M ++VR + + SL+
Sbjct: 221 IRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAKELDMPVERVREILKISQEPVSLET 280
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE+++++++ TL ERE++++RL +
Sbjct: 281 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRF 334
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 335 GMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 382
[94][TOP]
>UniRef100_A3ZMW7 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645
RepID=A3ZMW7_9PLAN
Length = 519
Score = 80.5 bits (197), Expect = 9e-14
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E +S +RN A+ L+E+G PT++ A+ T ++ R SLDR
Sbjct: 357 IRIPVHMVETMSRVRNVARQLLQEKGREPTLEETARRAGTTVEEARRVLAMSRYPISLDR 416
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
S + GD + D ++E+ P IG + L+ +++++ TL REREI++L Y
Sbjct: 417 PVGNSEDSQFGD----LLPDGEAES-PAIGAAQEMLRTRISRVLK-TLSYREREIIKLRY 470
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D T EE+ ++RER+RQ+ A+ KL+ +R +EL L
Sbjct: 471 GLGDGYSYTLEEVGHIFKVTRERIRQIEAKAVRKLQQPSRSQELVGFL 518
[95][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 80.5 bits (197), Expect = 9e-14
Identities = 56/168 (33%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA + ++ +KVR + + SL+
Sbjct: 215 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLET 274
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+++ P LKE++ +++ TL ERE ++RL +
Sbjct: 275 PIGEEDDSHLGD----FIEDQEALT-PADAAAYELLKEQLEDVLD-TLTEREENVLRLRF 328
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 329 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[96][TOP]
>UniRef100_UPI00016C45A8 transcription initiation factor sigma 70 n=1 Tax=Gemmata
obscuriglobus UQM 2246 RepID=UPI00016C45A8
Length = 556
Score = 80.1 bits (196), Expect = 1e-13
Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E +S +RN +L +E G PT+ A ++ ++ + + + SLDR
Sbjct: 387 IRIPVHMIETMSKLRNVSKQLLQELGREPTVQETADAAKISYEECKRVLKISRQPISLDR 446
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
S + GD F+ D E+ P LK+++ ++ TL REREI++L Y
Sbjct: 447 PVGESEDSYFGD----FIEDNSVES-PVNAATNEMLKDKIEGVLK-TLTYREREIIKLRY 500
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D T EE+ + ++RERVRQ+ A+ KL+H R ++LE L
Sbjct: 501 GLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFL 548
[97][TOP]
>UniRef100_Q7VIQ9 RNA polymerase sigma factor n=1 Tax=Helicobacter hepaticus
RepID=Q7VIQ9_HELHP
Length = 623
Score = 80.1 bits (196), Expect = 1e-13
Identities = 57/174 (32%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYR-LEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I + ++E G P ID IAK + + KV+N + + SLD
Sbjct: 459 IRIPIHMIETINRIHKIMRKHVQETGKEPDIDFIAKEVGLPIDKVKNVIKITKEPVSLDA 518
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVE---REREIVR 231
+G GD FV DK S +G ++ LKE++ I+ L + RE+ ++R
Sbjct: 519 PIGSDDDGKFGD----FVEDKSS-----VGPMDYILKEDLKVQIDEVLEQLNDREKAVIR 569
Query: 230 LYYGL--DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 75
+ +GL D+ T EEI K + ++RERVRQ+ A++KLKH ++L+ + E
Sbjct: 570 MRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEE 623
[98][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 80.1 bits (196), Expect = 1e-13
Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA + ++ KVR + + SL+
Sbjct: 214 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSTDKVREIMKIAQEPVSLET 273
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL ERE ++RL +
Sbjct: 274 PI-----GEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLD-TLTEREENVLRLRF 327
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 328 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375
[99][TOP]
>UniRef100_C5CDI4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1
RepID=C5CDI4_KOSOT
Length = 405
Score = 80.1 bits (196), Expect = 1e-13
Identities = 51/168 (30%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNA-QYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ + + L+E G PT++ + K T +K+ A + SL+
Sbjct: 235 IRVPVHMVETINKVNKVIREHLQEHGEYPTVEELGKLTGKTPEKIEEILAASKETVSLES 294
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
++G T +FV D+ E P + L+E+++++++ TL RE ++++ Y
Sbjct: 295 P----ISGDEESTMGDFVHDESIEK-PEEAAIKMLLREQIDEVLD-TLSPREAMVLKMRY 348
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D K T EE+ + ++RER+RQ+ + AL KL+H +R K+L+A+L
Sbjct: 349 GLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALL 396
[100][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E+G PT + I + + M +KVR + + SL+
Sbjct: 196 IRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIGEEMGMPAEKVREILKIAQEPVSLET 255
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P L+E+++ +++ TL +RE+ ++ L +
Sbjct: 256 PIGEEEDSHLGD----FIEDEDAP-APASAASFTLLREQLDDVLD-TLTDREKRVLELRF 309
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 310 GLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
[101][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 2/170 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + +++ G P + I + +T KVR + + SL+
Sbjct: 302 IRIPVHMVETINKLIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLET 361
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + E+ P + LK+++ +++ TL ERE ++RL +
Sbjct: 362 PIGEENDSHLGD----FIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRF 415
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 75
GL D K T EE+ + G++RER+RQ+ AL KL+H +R K+L+ + E
Sbjct: 416 GLEDGKTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFMEE 465
[102][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
RepID=C9L8C6_RUMHA
Length = 330
Score = 80.1 bits (196), Expect = 1e-13
Identities = 57/171 (33%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IA+ +NM+ ++VR + + SL+
Sbjct: 168 IRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAEEMNMSVERVREILKISQEPVSLET 227
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + D A LKE++ +++ TL ERE++++R
Sbjct: 228 PIGEEEDSHLGD----FIQD---DNVP-VPADAAAFTLLKEQLVEVLG-TLTEREQKVLR 278
Query: 230 LYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GLD + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 279 LRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 329
[103][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 80.1 bits (196), Expect = 1e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L+E G PT + +AK + M ++KVR + + SL+
Sbjct: 195 IRIPVHMVETINKLIRVQRQLLQELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLET 254
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P LKE++ +++ TL RE +++RL +
Sbjct: 255 PIGEEEDSHLGD----FIPDEDAP-APAEAAAFTMLKEQLMDVLD-TLTPREEKVLRLRF 308
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 309 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356
[104][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 80.1 bits (196), Expect = 1e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L+E G PT + +AK + M ++KVR + + SL+
Sbjct: 195 IRIPVHMVETINKLIRIQRQLLQELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLET 254
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P LKE++ +++ TL RE +++RL +
Sbjct: 255 PIGEEEDSHLGD----FIPDEDAP-APAEAAAFTMLKEQLMDVLD-TLTPREEKVLRLRF 308
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 309 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356
[105][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 80.1 bits (196), Expect = 1e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L+E G PT + +AK + M ++KVR + + SL+
Sbjct: 195 IRIPVHMVETINKLIRVQRQLLQELGREPTPEELAKEMGMPEEKVREIMKIAQEPVSLET 254
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P LKE++ +++ TL RE +++RL +
Sbjct: 255 PIGEEEDSHLGD----FIPDEDAP-APAEAAAFTMLKEQLMDVLD-TLTPREEKVLRLRF 308
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 309 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356
[106][TOP]
>UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0ET20_9FIRM
Length = 367
Score = 80.1 bits (196), Expect = 1e-13
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ +R ++ L+E G PT + IAK +NM K+ + SLD
Sbjct: 205 IRVPVHMVETINKTLRTSRMLLQELGREPTNEEIAKKMNMPVAKIDEILKTSRDPVSLDT 264
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D +S P LKEE+ + + +L ERER +++L +
Sbjct: 265 PIGEEEDSQLGD----FIED-ESLLSPVDSASFSMLKEELEEAM-ASLTERERNVIKLRF 318
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD K T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 319 GLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDFL 366
[107][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 80.1 bits (196), Expect = 1e-13
Identities = 56/171 (32%), Positives = 101/171 (59%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P+ + IA+ +++ ++VR + + SL+
Sbjct: 201 IRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAEEMDIPVERVREILKISQEPVSLET 260
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D EN+P + D A LKE++++++ TL ERE++++R
Sbjct: 261 PIGEEEDSHLGD----FIQD---ENVP-VPADAAAFTLLKEQLDEVLG-TLTEREQKVLR 311
Query: 230 LYYGLD-KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GLD + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 312 LRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 362
[108][TOP]
>UniRef100_A6C4Z7 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797
RepID=A6C4Z7_9PLAN
Length = 561
Score = 80.1 bits (196), Expect = 1e-13
Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 2/179 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E +S +R +L +E G PT++ A+ ++ ++ R + SLDR
Sbjct: 375 IRIPVHMIETMSKLRKVSKQLLQENGREPTLEETAEVAGISLEETRRVLKISRHPISLDR 434
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
S + GD F+ D S++ P + LK++++ ++ TL REREI++L +
Sbjct: 435 PVGESEDSYFGD----FIEDSDSDS-PVNTASQEMLKDKIDHVLK-TLTYREREIIKLRF 488
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH*YDGLIIE 48
GL D T EE+ + ++RERVRQ+ A+ KL+H R K+L+ + +GL+ E
Sbjct: 489 GLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLQGFI-----EGLVPE 542
[109][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
Length = 418
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G + +I+A+ L M +K++ E + SL+
Sbjct: 255 IRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVEKIKAIQEMNQEPISLET 314
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D+++ + P+ + L+EE++ ++ TL RE +++R Y
Sbjct: 315 PVGSEEDSELGD----FVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRY 368
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 369 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKLE 413
[110][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 80.1 bits (196), Expect = 1e-13
Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLE-ERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP HL++ +S IR L E G +PT + IA+ ++M+ +K+R+ ++ SL+R
Sbjct: 280 IRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLER 339
Query: 401 ETFPSLNGLPGDTYHNFV-ADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
P N +F+ AD++S P V++ L++++ +IN +L RER++VR+
Sbjct: 340 ---PLKNDDDASQLSDFIEADQES---PEEHVEKSMLRDDLENVIN-SLSPRERDVVRMR 392
Query: 224 YGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
YGLD + T EEI + ++RERVRQ+ A+ KL+ R L
Sbjct: 393 YGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSIL 437
[111][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 80.1 bits (196), Expect = 1e-13
Identities = 57/165 (34%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLE-ERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP HL++ +S IR L E G +PT + IA+ ++M+ +K+R+ ++ SL+R
Sbjct: 280 IRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLER 339
Query: 401 ETFPSLNGLPGDTYHNFV-ADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
P N +F+ AD++S P V++ L++++ +IN +L RER++VR+
Sbjct: 340 ---PLKNDDDASQLSDFIEADQES---PEEHVEKSMLRDDLENVIN-SLSPRERDVVRMR 392
Query: 224 YGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
YGLD + T EEI + ++RERVRQ+ A+ KL+ R L
Sbjct: 393 YGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSIL 437
[112][TOP]
>UniRef100_Q2JIA4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIA4_SYNJB
Length = 366
Score = 79.7 bits (195), Expect = 1e-13
Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E+L+ I+ AQ +L +E+G TPTI+ IA L MT +VR + + SL+
Sbjct: 202 IRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELEMTPPQVRELLVRVPRSVSLET 261
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ + GD + P + AL ++ +L++ L RER+++R+ +
Sbjct: 262 KVGKDKDTELGDLLET------DDISPEETMMREALHRDLQQLLS-DLTSRERDVIRMRF 314
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + + EI + + LSRERVRQ+ AL+KL+ R+ + L
Sbjct: 315 GLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 362
[113][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 79.7 bits (195), Expect = 1e-13
Identities = 51/168 (30%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P+ + IAK ++++ +KVR + + SL+
Sbjct: 205 IRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAKEMDISGEKVREILKIAQEPVSLET 264
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E + L+E++++++ TL +RE++++RL +
Sbjct: 265 PIGEEEDSHLGDFIEDADARAPAEEASFT-----LLREQLDEVLK-TLTDREQKVLRLRF 318
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ ++ G++RER+RQ+ L KL+H +R K+L+ L
Sbjct: 319 GLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 366
[114][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 79.7 bits (195), Expect = 1e-13
Identities = 50/168 (29%), Positives = 99/168 (58%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ ++E G PT + IA+ + ++ +KVR + + SL+
Sbjct: 207 IRIPVHMVETINKLVRVSRQLVQELGREPTPEEIAEKMGISPEKVREIMKVAQEPVSLET 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D++++ P L+E++N+++ +L RE++++RL +
Sbjct: 267 PIGEEEDSHLGD----FIEDQEAQ-APAEEASYALLREQLNEVLQ-SLTPREQKVLRLRF 320
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ ++ G++RER+RQ+ L KL+H +R K+L+ L
Sbjct: 321 GLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 368
[115][TOP]
>UniRef100_C3WID8 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 2_1_31
RepID=C3WID8_9FUSO
Length = 269
Score = 79.7 bits (195), Expect = 1e-13
Identities = 53/165 (32%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G + +I+A+ L M +K++ E + SL+
Sbjct: 106 IRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVEKIKAIQEMNQEPISLET 165
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D+++ + P+ + L+EE++ ++ TL RE +++R Y
Sbjct: 166 PVGSEEDSELGD----FVEDQKTTS-PYEATNRAILREELDGVLK-TLSPREEKVLRYRY 219
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 220 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKLE 264
[116][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
RepID=C0BBA6_9FIRM
Length = 371
Score = 79.7 bits (195), Expect = 1e-13
Identities = 54/168 (32%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA L+M +VR + + SL+
Sbjct: 209 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPVDRVREILKISQEPVSLET 268
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE+++++++ TL ERE++++RL +
Sbjct: 269 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAQTLLKEQLDEVLS-TLTEREQKVLRLRF 322
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 323 GMSDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
[117][TOP]
>UniRef100_A8S2D4 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8S2D4_9CLOT
Length = 406
Score = 79.7 bits (195), Expect = 1e-13
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E ++ IR AQ L + G P+++ +A+ +NM+ K+V +A SL+
Sbjct: 244 IRLPVHMVEAVNKIRRAQRSLSVKLGREPSMEEVAEEVNMSGKRVAELIQASGDTVSLET 303
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ G +FVAD + + + + L+EE++ ++ L RERE++ L +
Sbjct: 304 P----VGDEEGSNLGDFVADDANASTE-DKAESFLLREEIDSMLQ-GLNPREREVIILRF 357
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL+ LT EE+ KR ++RER+RQ+ AL KL++ ++ K++ L
Sbjct: 358 GLETGHPLTLEEVGKRFNVTRERIRQIETAALRKLRNPSKSKKIRDFL 405
[118][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 79.7 bits (195), Expect = 1e-13
Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 2/170 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + +++ G P + I + +T KVR + + SL+
Sbjct: 295 IRIPVHMVETINKLIRIQRTLIQDLGRDPMPEEIGAEMELTADKVREIQKIAQEPVSLET 354
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + E+ P + LK+++ +++ TL ERE ++RL +
Sbjct: 355 PIGEEDDSHLGD----FIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRF 408
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 75
GL D K T EE+ + G++RER+RQ+ AL KL+H +R K+L+ + E
Sbjct: 409 GLEDGKTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFMEE 458
[119][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 79.7 bits (195), Expect = 1e-13
Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK ++M KVR + + SL+
Sbjct: 216 IRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMDMPVDKVREIMKIAQEPVSLET 275
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D ++ P LKE++ K++N TL RE +++RL +
Sbjct: 276 PIGEEEDSHLGD----FIPDDEAP-APADAAAFRMLKEQLLKILN-TLTPREEKVLRLRF 329
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 330 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 377
[120][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
nucleatum RepID=Q8RE13_FUSNN
Length = 331
Score = 79.3 bits (194), Expect = 2e-13
Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G + +I+A+ L M K++ E + SL+
Sbjct: 168 IRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLET 227
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D+++ + P+ + L+EE++ ++ TL RE +++R Y
Sbjct: 228 PVGSEEDSELGD----FVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRY 281
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 282 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKLE 326
[121][TOP]
>UniRef100_Q6AK94 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila
RepID=Q6AK94_DESPS
Length = 447
Score = 79.3 bits (194), Expect = 2e-13
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H E S A Y L +E G PT I+K N+ K+ + EA + SL+
Sbjct: 286 IRLPVHFLELRSQFFKAFYALFKELGREPTPLEISKTTNLPMDKILSILEASREPISLET 345
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G T +F+ +++S++ P+ V L V ++++ TL +RE +I+RL +
Sbjct: 346 PV-----GDDDSTLGDFLENQESQS-PYEAVQNRELSGRVTEILS-TLSDREEKIIRLRF 398
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
G+ +K T EEI KR +SRER+RQ+ AL +L+H++R+ +L+
Sbjct: 399 GIGEKAEYTLEEIGKRFNVSRERIRQIEKKALNRLRHSSRRDKLK 443
[122][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 79.3 bits (194), Expect = 2e-13
Identities = 55/168 (32%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IA+ +++T +KVR + + SL+
Sbjct: 214 IRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEKMDLTPEKVREIMKIAQEPVSLET 273
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P LKE++ +++ TL +RE ++RL +
Sbjct: 274 PIGEEDDSHLGD----FIEDQDALE-PSDAAAYELLKEQLEDVLD-TLTDREENVLRLRF 327
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 328 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375
[123][TOP]
>UniRef100_A8ZUC3 RNA polymerase sigma factor n=1 Tax=Desulfococcus oleovorans Hxd3
RepID=A8ZUC3_DESOH
Length = 738
Score = 79.3 bits (194), Expect = 2e-13
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++ERG P+ + IA+ + + +KVR + + SL+
Sbjct: 575 IRIPVHMIETINKLIRTSRYLVQERGYEPSPEEIAEKMEIPLEKVRRVLKIAREPISLET 634
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK+ IP L E+ K++ TL RE +++R+ +
Sbjct: 635 PIGEEEDSHLGD----FIEDKKFM-IPSEAAVSMNLSEQTRKVL-ATLTPREEKVLRMRF 688
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
G+ +K T EE+ + ++RER+RQ+ AL KL+H R K L+
Sbjct: 689 GIGEKADHTLEEVGRDFAVTRERIRQIEAKALRKLRHPTRSKMLK 733
[124][TOP]
>UniRef100_A7NS26 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NS26_ROSCS
Length = 399
Score = 79.3 bits (194), Expect = 2e-13
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E +S ++ A ++L++ PT + IA + ++ KVR EA SL+
Sbjct: 237 IRLPVHMGEAISQVKRASHKLQQMMQREPTPEEIADAMGISSTKVRRTLEASMHPLSLEM 296
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G GD F+ D + P L+E++ +++ L ERER+I++L Y
Sbjct: 297 PVGQEGEGRMGD----FIEDDRIST-PAEAAAASMLREQLEEVLQ-KLPERERKIIQLRY 350
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ G++RER+RQ+ VAL KL+H K+L L
Sbjct: 351 GLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 398
[125][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
RepID=D0BQ42_9FUSO
Length = 416
Score = 79.3 bits (194), Expect = 2e-13
Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G + +I+A+ L M K++ E + SL+
Sbjct: 253 IRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLET 312
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D+++ + P+ + L+EE++ ++ TL RE +++R Y
Sbjct: 313 PVGSEEDSELGD----FVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRY 366
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 367 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKLE 411
[126][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
RepID=C7XNV3_9FUSO
Length = 418
Score = 79.3 bits (194), Expect = 2e-13
Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G + +I+A+ L M K++ E + SL+
Sbjct: 255 IRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLET 314
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D+++ + P+ + L+EE++ ++ TL RE +++R Y
Sbjct: 315 PVGSEEDSELGD----FVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRY 368
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 369 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKLE 413
[127][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
14600 RepID=C4G971_9FIRM
Length = 614
Score = 79.3 bits (194), Expect = 2e-13
Identities = 54/168 (32%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P+ + IA+ + T +VR + + SL+
Sbjct: 452 IRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAREMETTPDRVREILKISQEPVSLET 511
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + +P LKE++N++++ TL ERER+++ L +
Sbjct: 512 PIGEEEDSHLGD----FIQDENAP-VPAEAATFTLLKEQLNEVLD-TLTERERKVLILRF 565
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 566 GLEDGRGRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 613
[128][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
RepID=C3WX07_9FUSO
Length = 417
Score = 79.3 bits (194), Expect = 2e-13
Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G + +I+A+ L M K++ E + SL+
Sbjct: 254 IRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLET 313
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D+++ + P+ + L+EE++ ++ TL RE +++R Y
Sbjct: 314 PVGSEEDSELGD----FVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRY 367
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 368 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKLE 412
[129][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
RepID=C3WPP3_9FUSO
Length = 340
Score = 79.3 bits (194), Expect = 2e-13
Identities = 53/165 (32%), Positives = 94/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G + +I+A+ L M K++ E + SL+
Sbjct: 177 IRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQEPISLET 236
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D+++ + P+ + L+EE++ ++ TL RE +++R Y
Sbjct: 237 PVGSEEDSELGD----FVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRY 290
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 291 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKLE 335
[130][TOP]
>UniRef100_C1ZU97 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodothermus
marinus DSM 4252 RepID=C1ZU97_RHOMR
Length = 279
Score = 79.3 bits (194), Expect = 2e-13
Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP + +S IR RL +E P+ + +A+ LN+ +K+R A + + S+D
Sbjct: 117 VRLPLNRIGTISKIRKVSARLAQEHERAPSAEELAEELNIDVEKIREALQHTGRALSMDA 176
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ D N + + P G+ E +LK ++ + ++ TL RE EI+RLY+
Sbjct: 177 PFTDDDDNSLLDVLPN-----EEDTSPDEGLMEESLKIDIERALS-TLHPREAEIIRLYF 230
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
G+ ++ LT EEI +R GL+RERVRQ+ AL KL+ R++EL+
Sbjct: 231 GIGREHPLTLEEIGQRFGLTRERVRQIKEKALRKLRQKHRREELQ 275
[131][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 79.3 bits (194), Expect = 2e-13
Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P+ + I + +++T +KVR + + SL+
Sbjct: 213 IRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLET 272
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A S++ + LKE++ +I+ TL +RE ++RL +
Sbjct: 273 PIGEEDDSHLGDFIEDSEAQSPSDHAAYE-----LLKEQLEDVID-TLTDREENVLRLRF 326
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 327 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[132][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P+ + IA + ++ +KVR + + SL+
Sbjct: 215 IRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAAEMELSVEKVREIMKIAQEPVSLET 274
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL ERE ++RL +
Sbjct: 275 PI-----GEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLD-TLTEREENVLRLRF 328
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 329 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[133][TOP]
>UniRef100_Q2JT33 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JT33_SYNJA
Length = 364
Score = 79.0 bits (193), Expect = 3e-13
Identities = 55/168 (32%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E+L+ I+ AQ +L +E+G TPTI+ IA L MT +VR + + SL+
Sbjct: 200 IRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELEMTVPQVRELLVRVPRSVSLET 259
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ + GD + P + AL ++ +L+ L RER+++R+ +
Sbjct: 260 KVGKDKDTELGDLLET------DDISPEETMMREALHRDLQQLL-ADLTSRERDVIRMRF 312
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + + EI + + LSRERVRQ+ AL+KL+ R+ + L
Sbjct: 313 GLGDGRTYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 360
[134][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 79.0 bits (193), Expect = 3e-13
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P+ + IA+ +++T +KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEEMDLTPEKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E+ + LKE++ +++ TL +RE ++RL +
Sbjct: 270 PIGEEDDSHLGDFIEDQDATSPAEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 324 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
[135][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
audaxviator MP104C RepID=B1I1U1_DESAP
Length = 360
Score = 79.0 bits (193), Expect = 3e-13
Identities = 52/168 (30%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IA+ +++++ KVR + + SL+
Sbjct: 198 IRIPVHMVETINKLIRISRQLLQELGREPLPEEIAREMDISEDKVREIQKIAQEPVSLET 257
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ ++ P L+E+++ ++ TL ERE+ ++RL +
Sbjct: 258 PIGEEEDSHLGD----FIEDQDAQ-APAEEASFTLLREQLDDVLK-TLTEREQRVLRLRF 311
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ L KL+H +R K+L+ L
Sbjct: 312 GLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 359
[136][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
4571 RepID=A8YVM2_LACH4
Length = 356
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +NM KVR+ + + SL+
Sbjct: 194 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPTNKVRDILKIAQEPVSLET 253
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ +++ TL +RE ++RL +
Sbjct: 254 PIGEEDDSHLGD----FIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRF 307
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L
Sbjct: 308 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQL 351
[137][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
DSM 20075 RepID=C9LZ42_LACHE
Length = 370
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +NM KVR+ + + SL+
Sbjct: 208 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPTNKVRDILKIAQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ +++ TL +RE ++RL +
Sbjct: 268 PIGEEDDSHLGD----FIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRF 321
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L
Sbjct: 322 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQL 365
[138][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 79.0 bits (193), Expect = 3e-13
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M +KVR + + SL+
Sbjct: 254 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLET 313
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 314 PI-----GEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRF 367
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 368 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[139][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IA ++++ +KVR + + SL+
Sbjct: 212 IRIPVHMVETINKLIRVSRQLLQELGREPAPEEIAAEMDLSVEKVREIMKIAQEPVSLET 271
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL ERE ++RL +
Sbjct: 272 PI-----GEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLD-TLTEREENVLRLRF 325
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 326 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[140][TOP]
>UniRef100_C5ZWP6 RNA polymerase sigma factor n=1 Tax=Helicobacter canadensis MIT
98-5491 RepID=C5ZWP6_9HELI
Length = 616
Score = 79.0 bits (193), Expect = 3e-13
Identities = 56/166 (33%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYR-LEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I + L+E G P ID IA+ + + KV+N + + SL+
Sbjct: 452 IRIPIHMIETINRINKIMRKYLQEEGKEPDIDKIAEEVGLPVDKVKNVIKITKEPISLEA 511
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
P NG G + +FV DK S P + + LKE+++ +++ L ERE+ ++R+ +
Sbjct: 512 ---PIGNGEDGK-FGDFVEDKGSVG-PMESILKEDLKEQIDDVLD-QLNEREKAVIRMRF 565
Query: 221 GL--DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GL D+ T EEI K + ++RERVRQ+ A++KLKH ++L+
Sbjct: 566 GLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLK 611
[141][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 79.0 bits (193), Expect = 3e-13
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M +KVR + + SL+
Sbjct: 190 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLET 249
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 250 PI-----GEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRF 303
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 304 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 351
[142][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
RepID=C2KFH9_9LACO
Length = 370
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +NM KVR+ + + SL+
Sbjct: 208 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPTNKVRDILKIAQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ +++ TL +RE ++RL +
Sbjct: 268 PIGEEDDSHLGD----FIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRF 321
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L
Sbjct: 322 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQL 365
[143][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 79.0 bits (193), Expect = 3e-13
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M +KVR + + SL+
Sbjct: 254 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLET 313
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 314 PI-----GEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRF 367
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 368 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[144][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
RepID=C2HPX4_LACAC
Length = 370
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +NM KVR+ + + SL+
Sbjct: 208 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPTNKVRDILKIAQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ +++ TL +RE ++RL +
Sbjct: 268 PIGEEDDSHLGD----FIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRF 321
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L
Sbjct: 322 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQL 365
[145][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 79.0 bits (193), Expect = 3e-13
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M +KVR + + SL+
Sbjct: 260 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLET 319
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 320 PI-----GEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRF 373
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 374 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 421
[146][TOP]
>UniRef100_C0UV59 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
BAA-798 RepID=C0UV59_9BACT
Length = 338
Score = 79.0 bits (193), Expect = 3e-13
Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 3/169 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E ++ + A +L +E G PT + +A+ + M +KVR A SL+
Sbjct: 176 IRLPVHITETMNHLYKASRKLSQELGREPTCEELAEYMGMNPEKVRLIMRASRHPLSLEG 235
Query: 401 ETFPSLNGLPGDT-YHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
G GD+ F+ D +E + + E LK E++K++N +L E+ER+++ L
Sbjct: 236 PV-----GTDGDSSLGQFIPDSTTETPVDLAIGE-VLKRELSKVLN-SLTEKERKVMVLR 288
Query: 224 YGLDKKCL-TWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
YGL+ T EE+ R+G++RERVRQ+ ALEKL+ + L L
Sbjct: 289 YGLEGSSPHTLEEVGHRLGVTRERVRQIEAKALEKLRKPGKLNHLRDFL 337
[147][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 79.0 bits (193), Expect = 3e-13
Identities = 55/171 (32%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ L+E G PT + IAK +++ ++VR + + SL+
Sbjct: 286 IRIPVHMVETINKLLRVSRQLLQELGREPTPEEIAKEMDIPVERVREIQKISQEPVSLET 345
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + +E A LKE++ +++ TL ERE++++R
Sbjct: 346 PIGEEEDSHLGD----FIQD---DNVP-VPAEEAASTILKEQLVEVLG-TLTEREQKVLR 396
Query: 230 LYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GLD + T EE+ + ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 397 LRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSRKLRDFL 447
[148][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 79.0 bits (193), Expect = 3e-13
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M +KVR + + SL+
Sbjct: 254 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLET 313
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 314 PI-----GEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLD-TLTDREENVLRLRF 367
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 368 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[149][TOP]
>UniRef100_B2DVB6 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae
CDC0288-04 RepID=B2DVB6_STRPN
Length = 369
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRIVLREQLDEILD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+ +R K L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPL 363
[150][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
RepID=A5ZYP8_9FIRM
Length = 330
Score = 79.0 bits (193), Expect = 3e-13
Identities = 57/171 (33%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA+ + M +VR + + SL+
Sbjct: 168 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAEEMKMPVDRVREILKISQEPVSLET 227
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + D A LKE++ +++ TL ERE++++R
Sbjct: 228 PIGEEEDSHLGD----FIQD---DNVP-VPADAAAFTLLKEQLIEVLG-TLTEREQKVLR 278
Query: 230 LYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GLD + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 279 LRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 329
[151][TOP]
>UniRef100_P0A4J0 RNA polymerase sigma factor rpoD n=24 Tax=Streptococcus pneumoniae
RepID=RPOD_STRR6
Length = 369
Score = 79.0 bits (193), Expect = 3e-13
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRIVLREQLDEILD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL KL+ +R K L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPL 363
[152][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M KVR + + SL+
Sbjct: 207 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMNTDKVREILKIAQEPVSLET 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 267 PI-----GEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLD-TLTDREENVLRLRF 320
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 321 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[153][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 78.6 bits (192), Expect = 3e-13
Identities = 52/168 (30%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L+E G PT + IA +++ ++VR + + SL+
Sbjct: 199 IRIPVHMVETINKLIRVQRQLLQELGREPTPEEIAHEMDIPVERVREIQKIAQEPVSLET 258
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ ++ P L+E++ +++N +L RE+ ++RL +
Sbjct: 259 PIGEEEDSHLGD----FIEDEDAQ-APAEAASFMLLREQLEEVLN-SLTPREKRVLRLRF 312
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 313 GLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360
[154][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 78.6 bits (192), Expect = 3e-13
Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA ++++ ++VR + + SL+
Sbjct: 205 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLET 264
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE +I LKE++ +++ TL RE +++RL +
Sbjct: 265 PIGEEEDSHLGDFIPDEDAPAPSEAASFI-----LLKEQLEEVLE-TLTPREEKVLRLRF 318
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 319 GLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 366
[155][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 78.6 bits (192), Expect = 3e-13
Identities = 54/168 (32%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA ++++ ++VR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE +I LKE++ +++ TL RE +++RL +
Sbjct: 270 PIGEEEDSHLGDFIPDEDAPAPSEAASFI-----LLKEQLEEVLE-TLTPREEKVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 324 GLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[156][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 78.6 bits (192), Expect = 3e-13
Identities = 52/168 (30%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P+ + I + +++T +KVR + + SL+
Sbjct: 213 IRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLET 272
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A S++ + LKE++ +++ TL +RE ++RL +
Sbjct: 273 PIGEEDDSHLGDFIEDSEAQSPSDHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 326
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 327 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[157][TOP]
>UniRef100_C7GGM6 RNA polymerase sigma factor RpoD n=1 Tax=Roseburia intestinalis
L1-82 RepID=C7GGM6_9FIRM
Length = 397
Score = 78.6 bits (192), Expect = 3e-13
Identities = 56/171 (32%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G PT + IA +NM ++VR + + SL+
Sbjct: 235 IRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMNMPVERVREILKISQEPVSLET 294
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + D A LKE++ +++ TL ERE++++
Sbjct: 295 PIGEEEDSHLGD----FIQD---DNVP-VPADAAAFTLLKEQLEEVLG-TLTEREQKVLT 345
Query: 230 LYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GL D + T EE+ + ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 346 LRFGLEDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 396
[158][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 78.6 bits (192), Expect = 3e-13
Identities = 51/168 (30%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P + I +N+ +KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRIQRQMLQDLGREPIPEEIGAEMNLPTEKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +++ + LKE++ +++ TL +RE ++RL +
Sbjct: 271 PIGEEDDSHLGDFIEDHAATSPADHAAYE-----LLKEQIESVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 325 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 372
[159][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CM66_9FIRM
Length = 372
Score = 78.6 bits (192), Expect = 3e-13
Identities = 52/168 (30%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK ++M ++VR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAKEMDMPVERVREILKISQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE+++++++ TL ERE++++RL +
Sbjct: 270 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRF 323
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D + T EE+ + ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 324 GMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 371
[160][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 78.6 bits (192), Expect = 3e-13
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P+ + +A+ +++T +KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEEMDLTPEKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 270 PI-----GEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLD-TLTDREENVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 324 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
[161][TOP]
>UniRef100_UPI0001977D18 RNA polymerase sigma factor RpoD n=1 Tax=Helicobacter cinaedi CCUG
18818 RepID=UPI0001977D18
Length = 623
Score = 78.2 bits (191), Expect = 4e-13
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYR-LEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I + ++E G P I+ IAK + + KV+N + + SLD
Sbjct: 459 IRIPIHMIETINRIHKIMRKHIQETGKEPDIEYIAKEVGLPIDKVKNVIKITKEPVSLDA 518
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVE---REREIVR 231
+G GD FV DK S +G ++ LKE++ I+ L + RE+ ++R
Sbjct: 519 PIGSDDDGKFGD----FVEDKSS-----VGPMDYILKEDLKVQIDDVLEQLNDREKAVIR 569
Query: 230 LYYGL--DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 75
+ +GL D+ T EEI K + ++RERVRQ+ A++KLKH ++L+ + E
Sbjct: 570 MRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEE 623
[162][TOP]
>UniRef100_B8G5W2 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8G5W2_CHLAD
Length = 361
Score = 78.2 bits (191), Expect = 4e-13
Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLE-ERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP HL E + +R A YRLE E PT + +A LNM+ +KV+ A + SL++
Sbjct: 199 IRLPVHLSESIVHLRRAIYRLEQELEREPTPEELAHALNMSLRKVKRLLRASTQPISLEQ 258
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G +T +AD+ + + P ++ L+ E+N +N L ERER+I++L Y
Sbjct: 259 PLNADQEGRVSET----LADETAAS-PMEIAEQNMLQAELNAALN-ELPERERKILQLRY 312
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKH 114
GL D + T EE+ G++RER RQ+ AL +L+H
Sbjct: 313 GLLDGQRRTLEEVGATFGITRERTRQIEAEALRRLRH 349
[163][TOP]
>UniRef100_A9F3S6 RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum 'So ce 56'
RepID=A9F3S6_SORC5
Length = 639
Score = 78.2 bits (191), Expect = 4e-13
Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++E G PT + IA+ + + KVR + + SL+
Sbjct: 476 IRIPVHMIETINKLIRTSRYLVQEYGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLET 535
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK S P V L E+ K++ TL RE +++R+ +
Sbjct: 536 PIGEEEDSHLGD----FIEDK-SVISPAEAVINMNLAEQTRKVLK-TLTPREEKVLRMRF 589
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ + ++RER+RQ+ AL KL+H +R K+L++ +
Sbjct: 590 GIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKQLKSFI 637
[164][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 78.2 bits (191), Expect = 4e-13
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK +NM +KVR + + SL+
Sbjct: 196 IRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLET 255
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE + LKE++ +++ TL RE +++RL +
Sbjct: 256 PIGEEEDSHLGDFIPDDDAPAPSEAAAFT-----LLKEQLVDVLD-TLTPREEKVLRLRF 309
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 310 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
[165][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 78.2 bits (191), Expect = 4e-13
Identities = 56/168 (33%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK +NM +KVR + + SL+
Sbjct: 196 IRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLET 255
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE + LKE++ +++ TL RE +++RL +
Sbjct: 256 PIGEEEDSHLGDFIPDDDAPAPSEAAAFT-----LLKEQLVDVLD-TLTPREEKVLRLRF 309
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 310 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
[166][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
RepID=C2FI52_LACPL
Length = 368
Score = 78.2 bits (191), Expect = 4e-13
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M +KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 266 PI-----GEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 320 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[167][TOP]
>UniRef100_C1UL13 RNA polymerase sigma factor n=1 Tax=Haliangium ochraceum DSM 14365
RepID=C1UL13_9DELT
Length = 697
Score = 78.2 bits (191), Expect = 4e-13
Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++Y ++E G PT + IA+ + + KVR + + SL+
Sbjct: 534 IRIPVHMIETINKLVRTSRYLVQELGREPTPEEIAERMELPLDKVRKVLKIAKEPISLET 593
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK S P V L E+ K++ TL RE +++R+ +
Sbjct: 594 PIGEEEDSHLGD----FIEDK-SVTSPSDAVISVNLAEQTRKVL-ATLTPREEKVLRMRF 647
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ + ++RER+RQ+ AL KL+H +R K L+A +
Sbjct: 648 GIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLKAFV 695
[168][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
16841 RepID=C0FXF0_9FIRM
Length = 426
Score = 78.2 bits (191), Expect = 4e-13
Identities = 56/171 (32%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P+ + IA +NM ++VR + + SL+
Sbjct: 264 IRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAAEMNMPVERVREILKISQEPVSLET 323
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + D A LKE++ +++ TL ERE++++
Sbjct: 324 PIGEEEDSHLGD----FIQD---DNVP-VPADAAAFTLLKEQLEEVLG-TLTEREQKVLT 374
Query: 230 LYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GL D + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 375 LRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 425
[169][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 78.2 bits (191), Expect = 4e-13
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P+ + I + +++ +KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAPEKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G GD++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 271 PI-----GEEGDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 325 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[170][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ ++++ TL +RE ++RL +
Sbjct: 270 PIGEEDDSHLGD----FIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 324 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[171][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 77.8 bits (190), Expect = 6e-13
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + + K ++++ KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRVQRQLLQDYGREPTPEEVGKEMDLSPDKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL +RE ++RL +
Sbjct: 271 PI-----GEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 325 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[172][TOP]
>UniRef100_O67464 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
RepID=O67464_AQUAE
Length = 575
Score = 77.8 bits (190), Expect = 6e-13
Identities = 59/170 (34%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I A +L +E G PT + IA+ L++ +KV+ + + SL+
Sbjct: 413 IRIPVHMIETINKIIKASKKLFQENGREPTPEEIAEYLDIPVEKVKKVMKFSQEPISLET 472
Query: 401 ETFPSLNGLPGDTY-HNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
G DT+ +F+ DK N P V L+E++ K+++ TL E+EREI+
Sbjct: 473 PI-----GDDDDTFLKDFIEDKSIPN-PEEQVTRKLLREQLQKVLS-TLSEKEREILMYR 525
Query: 224 YGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLF 78
YGL D T E++ K ++RER+RQ+ AL KL+H AR K L+ F
Sbjct: 526 YGLVDGTEYTLEQVGKMFNVTRERIRQIENKALRKLRHPARAKYLKDFEF 575
[173][TOP]
>UniRef100_B8G6G0 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8G6G0_CHLAD
Length = 381
Score = 77.8 bits (190), Expect = 6e-13
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E +S ++ +RL++ PT + IA + ++ KVR EA SL+
Sbjct: 219 IRLPVHMGEAISQVKRTSHRLQQTMQREPTPEEIADAMGISAGKVRRTLEASMHPLSLEM 278
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G GD F+ D + P L+E++ +++ + L ERER+I++L Y
Sbjct: 279 PVGQEGEGRMGD----FIEDDRIST-PAEAAAASLLREQLEEVL-MKLPERERKIIQLRY 332
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ G++RER+RQ+ VAL KL+H K+L L
Sbjct: 333 GLKDGRYRTLEEVGIEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 380
[174][TOP]
>UniRef100_B8FBL3 RNA polymerase sigma factor n=1 Tax=Desulfatibacillum alkenivorans
AK-01 RepID=B8FBL3_DESAA
Length = 595
Score = 77.8 bits (190), Expect = 6e-13
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++E G PT + IA+ + +KVR + + SL+
Sbjct: 432 IRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAQKMEFPLEKVRRVLKIAKEPISLET 491
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK+ +P L E+ K++ TL RE +++R+ +
Sbjct: 492 PIGEEEDSHLGD----FIEDKKFM-LPSEAAISLNLAEQTRKVL-ATLTPREEKVLRMRF 545
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ K ++RER+RQ+ AL KL+H +R ++L++ +
Sbjct: 546 GIGEKADHTLEEVGKDFSVTRERIRQIEAKALRKLRHPSRSQKLKSFI 593
[175][TOP]
>UniRef100_B4U677 RNA polymerase sigma factor n=1 Tax=Hydrogenobaculum sp. Y04AAS1
RepID=B4U677_HYDS0
Length = 578
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/166 (33%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I +L +E G P+ + IAK LNM+ +KVR ++I + SL+
Sbjct: 415 IRIPVHMIETINKISKVSKKLFQEYGREPSPEEIAKALNMSPEKVRKILKSIQEPISLET 474
Query: 401 ETFPSLNGLPGDTY-HNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
G DT+ +F+ D N P L+E++ K+IN TL ++ERE++
Sbjct: 475 PI-----GDDEDTHLKDFIEDSSISN-PEEATARRLLREQIEKIIN-TLSDKEREVIMYR 527
Query: 224 YGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
+GL D T E++ L+RER+RQ+ A+ K++H +R K L+
Sbjct: 528 FGLVDGIEHTLEQVGTMFNLTRERIRQIESKAIRKIRHPSRAKYLK 573
[176][TOP]
>UniRef100_A9WGV1 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WGV1_CHLAA
Length = 381
Score = 77.8 bits (190), Expect = 6e-13
Identities = 56/168 (33%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E +S ++ +RL++ PT + IA + ++ KVR EA SL+
Sbjct: 219 IRLPVHMGEAISQVKRTSHRLQQTMQREPTPEEIADAMGISAGKVRRTLEASMHPLSLEM 278
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G GD F+ D + P L+E++ +++ + L ERER+I++L Y
Sbjct: 279 PVGQEGEGRMGD----FIEDDRIST-PAEAAAASLLREQLEEVL-MKLPERERKIIQLRY 332
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ G++RER+RQ+ VAL KL+H K+L L
Sbjct: 333 GLKDGRYRTLEEVGIEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 380
[177][TOP]
>UniRef100_A7HK63 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum
Rt17-B1 RepID=A7HK63_FERNB
Length = 372
Score = 77.8 bits (190), Expect = 6e-13
Identities = 50/167 (29%), Positives = 95/167 (56%), Gaps = 2/167 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYR-LEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ + ++E G P+I+ IA+ + K+ +A + SL+
Sbjct: 205 IRVPVHMVETINKIQKIKREYVQEHGEEPSIEYIAEQVGKPVDKIEEILQAAPETLSLET 264
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+AD +S P ++EE++KL+ TL +RE++++++ Y
Sbjct: 265 PVNEEDDSSMGD----FIAD-ESIGSPKKEAIRTLMREEIDKLLE-TLNDREKKVLKMRY 318
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAM 84
GL + K +T EE+ + G++RER+RQ+ + AL KL+H +R + L +
Sbjct: 319 GLYNGKPMTLEEVGQFFGVTRERIRQIEVKALRKLRHPSRSRYLRLL 365
[178][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/168 (32%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK +++ ++KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRVSRQLLQEFGREPKPEEIAKEMDLPEEKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + P LKE++ ++++ TL RE++++RL +
Sbjct: 270 PIGEEEDSHLGD----FIPDDDAP-APAEAAAFSLLKEQLIEVLD-TLTPREQKVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K+ ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 324 GLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[179][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5V244_ROSS1
Length = 401
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E ++ + A R+++ G PT D IA L + +KVR EA + SL+
Sbjct: 239 IRLPVHVGETINRVMRASNRIQQTTGRDPTPDEIALELGIPVEKVRRVLEAARQTISLET 298
Query: 401 ETFPSLNGLPGDTY-HNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
G GDT +F+ D + P L+E+++ + L ERER I++L
Sbjct: 299 PI-----GTEGDTVLADFIEDGKGVT-PMDSASHHILREQIDSALE-KLPERERRIIQLR 351
Query: 224 YGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKH 114
YGL D T EE+ + G++RER+RQ+ L KL+H
Sbjct: 352 YGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRH 389
[180][TOP]
>UniRef100_A5UPS4 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UPS4_ROSS1
Length = 402
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E +S ++ ++L++ PT + IA + ++ KVR EA SL+
Sbjct: 240 IRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTKVRRTLEASMHPLSLEM 299
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G GD F+ D + P L+E++ +++ L ERER+I++L Y
Sbjct: 300 PVGQEGEGRMGD----FIEDDRIST-PAEAAAASMLREQLEEVLQ-KLPERERKIIQLRY 353
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ G++RER+RQ+ VAL KL+H K+L L
Sbjct: 354 GLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 401
[181][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 77.8 bits (190), Expect = 6e-13
Identities = 52/168 (30%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L++ G P+ + IA+ + ++ ++VR + + SL+
Sbjct: 213 IRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISVERVREIMKIAQEPVSLET 272
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D Q P LKE++ ++++ TL ERE ++RL +
Sbjct: 273 PIGEEEDSHLGD----FIED-QDAPAPAEAASFMLLKEQLEEVLD-TLTEREERVLRLRF 326
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 327 GLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 374
[182][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
Length = 357
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK ++M+ KVR + + SL+
Sbjct: 195 IRIPVHMVETINKLIRVSRQLLQELGRDPLPEEIAKEMDMSVDKVREIMKIAQEPVSLET 254
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P LKE++ +++ TL RE +++RL +
Sbjct: 255 PIGEEEDSHLGD----FIPDEDAP-APAEAAAFTMLKEQLIDVLD-TLTPREEKVLRLRF 308
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 309 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 356
[183][TOP]
>UniRef100_C6JI10 RNA polymerase sigma factor n=1 Tax=Fusobacterium varium ATCC 27725
RepID=C6JI10_FUSVA
Length = 414
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ A+ L+E G T +++ + L M KV+ E SL+
Sbjct: 252 IRIPVHMIETINKIKKEARIYLQETGKDATPEVLGERLGMEVDKVKAIQEMNQDPISLET 311
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D + N P+ + L+E++N ++N TL RE ++R Y
Sbjct: 312 PVGSEEDSELGD----FVEDHKMLN-PYELTNRSLLREQLNGVLN-TLSSREERVLRYRY 365
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 366 GLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRKLRHPSRRKKLE 410
[184][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M KVR+ + + SL+
Sbjct: 202 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMGTDKVRDILKIAQEPVSLET 261
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ ++++ TL +RE ++RL +
Sbjct: 262 PIGEEDDSHLGD----FIEDKDATS-PEQHASYEMLKEQLEEVLD-TLTDREENVLRLRF 315
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 316 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[185][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ ++++ TL +RE ++RL +
Sbjct: 270 PIGEEDDSHLGD----FIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 324 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[186][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/168 (32%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M KVR+ + + SL+
Sbjct: 202 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMGTDKVRDILKIAQEPVSLET 261
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ ++++ TL +RE ++RL +
Sbjct: 262 PIGEEDDSHLGD----FIEDKDATS-PEQHASYEMLKEQLEEVLD-TLTDREENVLRLRF 315
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 316 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[187][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTDKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ ++++ TL +RE ++RL +
Sbjct: 271 PIGEEDDSHLGD----FIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 325 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 372
[188][TOP]
>UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991
RepID=A8RBC2_9FIRM
Length = 398
Score = 77.8 bits (190), Expect = 6e-13
Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 7/170 (4%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTID-IIAKNLNMTQKKVRNATEAINKVFSLD 405
+R+P H+ E ++ + Q +L ++ G PT + I AK N++ +KVR + + SL+
Sbjct: 233 IRIPVHMVETINKLTRIQRQLVQDLGRDPTAEEIAAKMENISPEKVREIQKIALEPVSLE 292
Query: 404 RETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA----LKEEVNKLINVTLVEREREI 237
+ GD F+ DK++ + DE+A LK+E+N ++ L ERE ++
Sbjct: 293 TPIGEEDDSHLGD----FIEDKEA-----LSPDEYANNQLLKDEINTVLQ-GLTEREEKV 342
Query: 236 VRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
+RL +GL D + T EE+ K ++RER+RQ+ AL KLKH R K L+
Sbjct: 343 LRLRFGLYDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLK 392
[189][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P+ + I + +++ +KVR + + SL+
Sbjct: 175 IRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLPPEKVREILKIAQEPVSLET 234
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A SE+ + LKE++ +++ TL +RE ++RL +
Sbjct: 235 PIGEEDDSHLGDFIEDSEAQSPSEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 288
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 289 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 336
[190][TOP]
>UniRef100_Q6MR57 RNA polymerase sigma factor n=1 Tax=Bdellovibrio bacteriovorus
RepID=Q6MR57_BDEBA
Length = 609
Score = 77.4 bits (189), Expect = 7e-13
Identities = 50/168 (29%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++Y ++E G PT + IA ++M KVR + + SL+
Sbjct: 446 IRIPVHMIETINKLVRTSRYLIQELGREPTPEEIADKMDMPVDKVRKVLKIAKEPISLET 505
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK+ N P + L E+ ++++ TL RE +++R+ +
Sbjct: 506 PVGEEEDSHLGD----FIEDKKVIN-PAEAIVNLNLAEQTRRVLS-TLTPREEKVLRMRF 559
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ ++ T EE+ + ++RER+RQ+ AL KL+H +R +L+A +
Sbjct: 560 GIGEESDHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRSNKLKAFV 607
[191][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QRZ3_PERMH
Length = 577
Score = 77.4 bits (189), Expect = 7e-13
Identities = 55/164 (33%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R A+ ++E G PT + IAK + M +KVR + SL+
Sbjct: 414 IRIPVHMIETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEKVRKILRTSQEPISLET 473
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
GD F+ DK + P V AL++++ ++++ TL ERE +++R +
Sbjct: 474 PIGDDDESHLGD----FIEDKTVMS-PEQHVLRQALRQQLEEVLS-TLSEREEQVLRYRF 527
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GL D T E++ K+ G++RER+RQ+ AL KL+H R K L
Sbjct: 528 GLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLRHPHRAKYL 571
[192][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 77.4 bits (189), Expect = 7e-13
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P D IAK + M+ KVR + + SL+
Sbjct: 197 IRIPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLET 256
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + P LKE++ +++ TL RE +++RL +
Sbjct: 257 PIGEEEDSHLGD----FIPDDDAP-APAEAAAFTLLKEQLIDVLD-TLTPREEKVLRLRF 310
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 311 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
[193][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
BAA-835 RepID=B2UM02_AKKM8
Length = 688
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/168 (30%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ + Q +L +E G PT + IA+ +++ ++VR+ + + SL
Sbjct: 522 IRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQPISLQA 581
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
S + GD F+ DK +EN P LKE++ +++ TL +RERE++ +
Sbjct: 582 PVGDSDDTSFGD----FIEDKAAEN-PMEEASFSFLKEKIKDVLD-TLTDREREVIEQRF 635
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D T EE+ ++ ++RER+RQ+ AL KL+H R +++ L
Sbjct: 636 GLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPTRISKIKGFL 683
[194][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 77.4 bits (189), Expect = 7e-13
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK +++ ++VR + + SL+
Sbjct: 209 IRIPVHMVETINKLIRVSRQLLQEYGREPMPEEIAKEMDIPVERVREIMKIAQEPVSLET 268
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E +I LKE++ +++ TL RE +++RL +
Sbjct: 269 PIGEEEDSHLGDFIEDQDAPAPAEAASFI-----LLKEQLEEVLE-TLTAREMKVLRLRF 322
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 323 GLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 370
[195][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 77.4 bits (189), Expect = 7e-13
Identities = 53/168 (31%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IA ++++++KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAAEMDLSEEKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P LKE++ ++++ TL RE++++RL +
Sbjct: 270 PIGEEEDSHLGD----FIPDEDAP-APAEAAAFSLLKEQLVEVLD-TLTPREQKVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K+ ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 324 GLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[196][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 77.4 bits (189), Expect = 7e-13
Identities = 53/168 (31%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I + +++ +KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEEMDLAPEKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+++ + P LKE++ +++ TL +RE ++RL +
Sbjct: 271 PIGEEDDSHLGD----FIEDQEATS-PADHAAYELLKEQLEDVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 325 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[197][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 77.4 bits (189), Expect = 7e-13
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P D IAK + M+ KVR + + SL+
Sbjct: 197 IRIPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLET 256
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + P LKE++ +++ TL RE +++RL +
Sbjct: 257 PIGEEEDSHLGD----FIPDDDAP-APAEAAAFTLLKEQLIDVLD-TLTAREEKVLRLRF 310
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K ++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 311 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
[198][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
RepID=C6VQS5_LACPJ
Length = 368
Score = 77.4 bits (189), Expect = 7e-13
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M +KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LKE++ +++ TL RE ++RL +
Sbjct: 266 PI-----GEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLD-TLTNREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 320 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[199][TOP]
>UniRef100_C3WG18 RNA polymerase sigma factor n=1 Tax=Fusobacterium mortiferum ATCC
9817 RepID=C3WG18_FUSMR
Length = 351
Score = 77.4 bits (189), Expect = 7e-13
Identities = 54/165 (32%), Positives = 93/165 (56%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ A+ L+E G T +++A+ L M +KV+ E SL+
Sbjct: 189 IRIPVHMIETINKIKKEARIYLQETGKDATPEVLAERLGMEVEKVKAIQEMNQDPISLET 248
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D + N P+ + L+E+++ ++N +L RE +++R Y
Sbjct: 249 PVGSEEDSELGD----FVEDNKMLN-PYELTNRSLLREQLDGVLN-SLSSREEKVLRYRY 302
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 303 GLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRKLRHPSRRKKLE 347
[200][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 77.4 bits (189), Expect = 7e-13
Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + IA+ ++++ KVR + + SL+
Sbjct: 215 IRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIAEEMDISPDKVREIIKIAQEPVSLET 274
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A S++ + LKE++ +++ TL +RE ++RL +
Sbjct: 275 PIGEEDDSHLGDFIEDQDATSPSDHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 328
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 329 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[201][TOP]
>UniRef100_B9XH89 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514
RepID=B9XH89_9BACT
Length = 614
Score = 77.4 bits (189), Expect = 7e-13
Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E + + AQ +L +E G T + IA + ++ ++V++ + + S+
Sbjct: 447 IRIPVHMIEIIGKLMRAQKQLLQEFGREATPEEIADEMQISVERVKSILKMAQQPISMQA 506
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
S+ T+ +F+ DK +EN P LK+++N ++ TL ERER IV L +
Sbjct: 507 ----SVGDSDDATFGDFIEDKSAEN-PSDMTSYSLLKDKLNDVL-ATLTERERRIVELRF 560
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D T EE+ K+ ++RER+RQ+ AL KL+H R + L+ L
Sbjct: 561 GLVDGYARTLEEVGKQYKVTRERIRQIEAKALRKLRHPTRVRHLKGFL 608
[202][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
RepID=B0ME78_9FIRM
Length = 370
Score = 77.4 bits (189), Expect = 7e-13
Identities = 55/171 (32%), Positives = 99/171 (57%), Gaps = 5/171 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IA+ +++ +VR + + SL+
Sbjct: 208 IRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAEEMDIPVDRVREILKISQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVR 231
+ GD F+ D +N+P + D A LKE++++++ TL ERE++++R
Sbjct: 268 PIGEEEDSHLGD----FIQD---DNVP-VPADAAAFTLLKEQLSEVLG-TLTEREQKVLR 318
Query: 230 LYYGLD-KKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GLD + T EE+ K ++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 319 LRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 369
[203][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +++ +KVR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +EN + LKE++ +++ TL +RE ++RL +
Sbjct: 271 PIGEEDDSHLGDFIEDHDATSPAENAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T E++ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 325 GLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 372
[204][TOP]
>UniRef100_Q2INW6 RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter dehalogenans
2CP-C RepID=Q2INW6_ANADE
Length = 805
Score = 77.0 bits (188), Expect = 1e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++E G PT + IA+ + + KVR + + SL+
Sbjct: 642 IRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLET 701
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + P V L E+ K++ TL RE +++R+ +
Sbjct: 702 PIGEEEDSHLGD----FIEDKSLVS-PSDAVINMNLAEQTRKVL-ATLTPREEKVLRMRF 755
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ + ++RER+RQ+ AL KL+H +R K L++ +
Sbjct: 756 GIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLKSFV 803
[205][TOP]
>UniRef100_B8JDL7 RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter dehalogenans
2CP-1 RepID=B8JDL7_ANAD2
Length = 802
Score = 77.0 bits (188), Expect = 1e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++E G PT + IA+ + + KVR + + SL+
Sbjct: 639 IRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLET 698
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + P V L E+ K++ TL RE +++R+ +
Sbjct: 699 PIGEEEDSHLGD----FIEDKSLVS-PSDAVINMNLAEQTRKVL-ATLTPREEKVLRMRF 752
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ + ++RER+RQ+ AL KL+H +R K L++ +
Sbjct: 753 GIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLKSFV 800
[206][TOP]
>UniRef100_B5E4I8 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae G54
RepID=B5E4I8_STRP4
Length = 369
Score = 77.0 bits (188), Expect = 1e-12
Identities = 53/164 (32%), Positives = 91/164 (55%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G PT + IA+ ++MT KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ EN P L+E+++++++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGD----FIEDEVIEN-PVDYTTRIVLREQLDEILD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
GLD K T E++ K ++RER+RQ+ AL K + +R K L
Sbjct: 320 GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKXRQPSRSKPL 363
[207][TOP]
>UniRef100_B4UDK5 RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter sp. K
RepID=B4UDK5_ANASK
Length = 805
Score = 77.0 bits (188), Expect = 1e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++E G PT + IA+ + + KVR + + SL+
Sbjct: 642 IRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLET 701
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + P V L E+ K++ TL RE +++R+ +
Sbjct: 702 PIGEEEDSHLGD----FIEDKSLVS-PSDAVINMNLAEQTRKVL-ATLTPREEKVLRMRF 755
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ + ++RER+RQ+ AL KL+H +R K L++ +
Sbjct: 756 GIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLKSFV 803
[208][TOP]
>UniRef100_A9NGS4 RNA polymerase sigma factor n=1 Tax=Acholeplasma laidlawii PG-8A
RepID=A9NGS4_ACHLI
Length = 419
Score = 77.0 bits (188), Expect = 1e-12
Identities = 52/168 (30%), Positives = 94/168 (55%), Gaps = 5/168 (2%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ +IR + ++E G TI+ IA+ +++T +KV+N + SL+
Sbjct: 254 IRIPVHMVETINKMIRIQRQLVQELGRDATIEEIAEKMDITPEKVQNIQRIAKEPISLEA 313
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINV---TLVEREREIVR 231
+ GD F++D + N ++ ++E V K ++ TL +RE +++R
Sbjct: 314 PVGEEEDSSLGD----FISDPNALN-----PHDYMMQEMVKKTLDEVLETLTDREEKVLR 364
Query: 230 LYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
L YGL D K T EE+ + G++RER+RQ+ AL KL+ R+ +L+
Sbjct: 365 LRYGLLDGKTHTLEEVGREFGVTRERIRQIEAKALRKLRSPQRQNKLK 412
[209][TOP]
>UniRef100_A7I1A4 RNA polymerase sigma factor n=1 Tax=Campylobacter hominis ATCC
BAA-381 RepID=A7I1A4_CAMHC
Length = 624
Score = 77.0 bits (188), Expect = 1e-12
Identities = 55/167 (32%), Positives = 97/167 (58%), Gaps = 4/167 (2%)
Frame = -3
Query: 578 LRLPTHLHERLSLIR--NAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLD 405
+R+P H+ E ++ I N +Y ++E G P I I+AK + ++ K++ + + SL+
Sbjct: 460 IRIPIHMIETINRINKINRKY-VQENGKEPDITILAKEVGLSIDKIKQVIKITKEPISLE 518
Query: 404 RETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
+G GD FV DK + + P + + LKE+++K+++ L ERER ++R+
Sbjct: 519 APVGNEDDGKFGD----FVEDKGTIS-PIDQILKNDLKEQIDKVLD-QLNERERAVIRMR 572
Query: 224 YGL--DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
+GL D+ T EEI K + ++RERVRQ+ A++KLKH ++L+
Sbjct: 573 FGLLDDESDRTLEEIGKELSVTRERVRQIEASAIKKLKHPKVGRDLK 619
[210][TOP]
>UniRef100_A7H8C8 RNA polymerase sigma factor n=1 Tax=Anaeromyxobacter sp. Fw109-5
RepID=A7H8C8_ANADF
Length = 819
Score = 77.0 bits (188), Expect = 1e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++E G PT + IA+ + + KVR + + SL+
Sbjct: 656 IRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLET 715
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + P V L E+ K++ TL RE +++R+ +
Sbjct: 716 PIGEEEDSHLGD----FIEDKSLVS-PSDAVINMNLAEQTRKVL-ATLTPREEKVLRMRF 769
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ + ++RER+RQ+ AL KL+H +R K L++ +
Sbjct: 770 GIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLKSFV 817
[211][TOP]
>UniRef100_A6QAZ8 RNA polymerase sigma factor n=1 Tax=Sulfurovum sp. NBC37-1
RepID=A6QAZ8_SULNB
Length = 612
Score = 77.0 bits (188), Expect = 1e-12
Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 6/174 (3%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNA-QYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I + L+E G P ++ IAK + +T KV+N + + SL+
Sbjct: 448 IRIPIHMIETINRINKIIRKHLQETGKEPDLETIAKEVGLTVDKVKNVIKITKEPVSLET 507
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLV---EREREIVR 231
+G GD F+ DK + + + LK+++N I+ L ERE+ ++R
Sbjct: 508 PVGDEDDGRFGD----FIEDKTT-----LSPTDAVLKDDLNNQIDEVLDQLNEREKAVIR 558
Query: 230 LYYGL--DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 75
+ +GL D+ T EEI K + ++RERVRQ+ A++KLKH ++L+ + E
Sbjct: 559 MRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEE 612
[212][TOP]
>UniRef100_P77840 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
RepID=P77840_CHLAU
Length = 343
Score = 77.0 bits (188), Expect = 1e-12
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 4/169 (2%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEE---RGITPTIDIIAKNLNMTQKKVRNATEAINKVFSL 408
+RLP H+ E +S ++ +RL++ R TP + IA + ++ KVR EA SL
Sbjct: 181 IRLPVHMGEAISQVKRTSHRLQQTMQRDATP--EEIADAMGISAGKVRRTLEASMHPLSL 238
Query: 407 DRETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRL 228
+ G GD F+ D + P L+E++ +++ + L ERER+I++L
Sbjct: 239 EMPVGQEGEGRMGD----FIEDDRIST-PAEAPAASLLREQLEEVL-MKLPERERKIIQL 292
Query: 227 YYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAM 84
YGL D + T EE+ G++RER+RQ+ VAL KL+H K+L A+
Sbjct: 293 RYGLKDGRYRTLEEVGIEFGITRERIRQIEAVALRKLRHPHLGKKLRAI 341
[213][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 77.0 bits (188), Expect = 1e-12
Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L++ G PT + IAK + + +VR + + SL+
Sbjct: 211 IRIPVHMVETINKLIRVSRQLLQQLGREPTPEEIAKEMEIGVDRVREIMKIAQEPVSLET 270
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D Q P LKE++ +++ TL RE +++RL +
Sbjct: 271 PIGEEEDSHLGD----FIED-QDAPAPADAASFMLLKEQLEDVLD-TLTPREEKVLRLRF 324
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ + G++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 325 GLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 372
[214][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 77.0 bits (188), Expect = 1e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +++ +KVR + + SL+
Sbjct: 207 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLET 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E+ + LKE++ +++ TL +RE ++RL +
Sbjct: 267 PIGEEDDSHLGDFIEDQEATSPAEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 320
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 321 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[215][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 77.0 bits (188), Expect = 1e-12
Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I ++M+ KVR + + SL+
Sbjct: 220 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMSTDKVREILKIAQEPVSLET 279
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ ++++ TL +RE ++RL +
Sbjct: 280 PIGEEDDSHLGD----FIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRF 333
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ + G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 334 GLNDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 381
[216][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 77.0 bits (188), Expect = 1e-12
Identities = 53/168 (31%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +++ +KVR+ + + SL+
Sbjct: 216 IRIPVHMVETINKLIRIQRNLLQDLGREPTPEEIGAEMDVATEKVRDILKIAQEPVSLET 275
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D ++ + P LKE++ +++ TL +RE ++RL +
Sbjct: 276 PIGEEDDSHLGD----FIEDNEAVS-PADSAAYQMLKEQLESVLD-TLTDREENVLRLRF 329
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K G++RER+RQ+ AL KL+H +R K+L L
Sbjct: 330 GLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDFL 377
[217][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 77.0 bits (188), Expect = 1e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +++ +KVR + + SL+
Sbjct: 207 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLET 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E+ + LKE++ +++ TL +RE ++RL +
Sbjct: 267 PIGEEDDSHLGDFIEDQEATSPAEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 320
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 321 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[218][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
RepID=B9YB48_9FIRM
Length = 408
Score = 77.0 bits (188), Expect = 1e-12
Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNL-NMTQKKVRNATEAINKVFSLD 405
+R+P H+ E ++ + Q +L ++ G PT + IA+ + N+T KVR + + SL+
Sbjct: 243 IRIPVHMVETINKLTRVQRQLVQDLGREPTAEEIAEKMENITPDKVREIQKIALEPVSLE 302
Query: 404 RETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
+ GD F+ DK + + P + LK+E+N ++ L ERE +++RL
Sbjct: 303 TPIGEEDDSHLGD----FIEDKDAMS-PDQYANNQLLKDEINNVLQ-GLTEREEKVLRLR 356
Query: 224 YGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
+GL D + T EE+ K ++RER+RQ+ AL KLKH R K L
Sbjct: 357 FGLYDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRL 401
[219][TOP]
>UniRef100_B0ABJ4 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0ABJ4_9CLOT
Length = 385
Score = 77.0 bits (188), Expect = 1e-12
Identities = 53/168 (31%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK ++M+++KVR + SL+
Sbjct: 223 IRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAKEMDMSEEKVREIMKIAQDPVSLET 282
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D+ + P LK+++ +++ +L ERE+++++L +
Sbjct: 283 PIGEEEDSHLGD----FIPDEDAL-APAEAAAYSLLKDQIEEVLG-SLNEREQKVLKLRF 336
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K ++RER+RQ+ AL KL+H +R K+L L
Sbjct: 337 GLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 384
[220][TOP]
>UniRef100_Q59996 Probable RNA polymerase sigma-C factor n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPSC_SYNY3
Length = 404
Score = 77.0 bits (188), Expect = 1e-12
Identities = 52/164 (31%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E+L+ I+ AQ ++ +E+G TP ID +A+ L MT ++VR + + SL+
Sbjct: 240 IRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREVLTQVPRSVSLEL 299
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ G DT + + +++ P + AL+ ++ +++ + L RE+E++ L +
Sbjct: 300 KV-----GQDKDTELMDLLETDTQS-PEDELMREALQNDMQEIL-LDLTPREQEVIALRF 352
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
G D + EI + + LSRERVRQ+ AL+KL+H R+ +
Sbjct: 353 GFQDGVAHSLSEIGRILNLSRERVRQIEAKALQKLRHPRRRDRI 396
[221][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 76.6 bits (187), Expect = 1e-12
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ ++ +L E G P+ + IA+ L+M+ KVR + SL+
Sbjct: 202 IRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSVDKVREIMRVAQEPVSLET 261
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P + LKE++ ++ TL RE +++RL +
Sbjct: 262 PIGEEEDSHLGD----FIPDDDAP-VPAEAASQTLLKEQLADVLK-TLTPREEKVLRLRF 315
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K ++RER+RQ+ AL KL+H +R K+L L
Sbjct: 316 GLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDFL 363
[222][TOP]
>UniRef100_UPI00017F5605 RNA polymerase sigma factor (sigma-43) n=1 Tax=Clostridium
difficile QCD-23m63 RepID=UPI00017F5605
Length = 388
Score = 76.6 bits (187), Expect = 1e-12
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK + MT+ KVR + SL+
Sbjct: 226 IRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAKEMEMTEDKVREIMKIAQDPVSLET 285
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + P LKE++ ++ +L +RE+++++L +
Sbjct: 286 PIGEEEDSHLGD----FIPDDDAP-APAEAAAYSLLKEQIEDVLG-SLNDREQKVLKLRF 339
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K ++RER+RQ+ AL KL+H +R K+L L
Sbjct: 340 GLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 387
[223][TOP]
>UniRef100_Q18BX5 RNA polymerase sigma factor n=1 Tax=Clostridium difficile 630
RepID=Q18BX5_CLOD6
Length = 390
Score = 76.6 bits (187), Expect = 1e-12
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK + MT+ KVR + SL+
Sbjct: 228 IRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAKEMEMTEDKVREIMKIAQDPVSLET 287
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + P LKE++ ++ +L +RE+++++L +
Sbjct: 288 PIGEEEDSHLGD----FIPDDDAP-APAEAAAYSLLKEQIEDVLG-SLNDREQKVLKLRF 341
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K ++RER+RQ+ AL KL+H +R K+L L
Sbjct: 342 GLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 389
[224][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 76.6 bits (187), Expect = 1e-12
Identities = 51/168 (30%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L+E G P+ + IA+N+++ ++VR + + SL+
Sbjct: 272 IRIPVHMVETINKLVRVQRQLLQELGREPSPEEIAENMDIPVERVREIQKISQEPVSLET 331
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P LKE++ +++ TL ERE++++RL +
Sbjct: 332 PIGEEEDSHLGD----FIQD-DNVPVPAEAAASTLLKEQLVEVLG-TLTEREQKVLRLRF 385
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 386 GMDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLRDYL 433
[225][TOP]
>UniRef100_B1ZU80 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1
RepID=B1ZU80_OPITP
Length = 353
Score = 76.6 bits (187), Expect = 1e-12
Identities = 58/165 (35%), Positives = 90/165 (54%), Gaps = 4/165 (2%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP HL +++S +R L EE G PT + +A L + KV + + SLD
Sbjct: 158 IRLPVHLVDKISKMRRTAMALTEELGREPTDEELAIELQIPTSKVAHLKSVSVRPASLDA 217
Query: 401 ETFPSLNGLPGD--TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRL 228
G GD T+ V D + + P+ G+ E L +++ ++ +L ERE EI+RL
Sbjct: 218 PV-----GEEGDSATFGEIVGDDNAVS-PFEGLREKNLNSDLHAMV-ASLDEREAEIIRL 270
Query: 227 YYGLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKE 96
+GLD K LT EE+ +R ++RER+RQ+ +AL K++ A K E
Sbjct: 271 RFGLDGKDELTLEEVGRRFHVTRERIRQLEYLALSKMRKAMAKHE 315
[226][TOP]
>UniRef100_A6Q2X9 RNA polymerase sigma factor n=1 Tax=Nitratiruptor sp. SB155-2
RepID=A6Q2X9_NITSB
Length = 608
Score = 76.6 bits (187), Expect = 1e-12
Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 3/158 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I + L+E G P ++ IA+ + M +KV+N + + SL+
Sbjct: 444 IRIPIHMIETINRINKIVRKHLQETGKEPDVETIAEEVGMPVEKVKNVIKITKEPVSLEA 503
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+G GD F+ DK + N P + + +K ++ +++ L ERE+ +VR+ +
Sbjct: 504 PIGNEEDGKFGD----FIEDKNAPN-PLEVIMKEDMKSKIEEILE-NLNEREKAVVRMRF 557
Query: 221 GL--DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKH 114
GL D+ T EEI K + ++RERVRQ+ A++KLKH
Sbjct: 558 GLMPDESDRTLEEIGKELNVTRERVRQIESSAIKKLKH 595
[227][TOP]
>UniRef100_C9XSQ7 RNA polymerase sigma factor (Sigma-43) n=2 Tax=Clostridium
difficile RepID=C9XSQ7_CLODI
Length = 388
Score = 76.6 bits (187), Expect = 1e-12
Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK + MT+ KVR + SL+
Sbjct: 226 IRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAKEMEMTEDKVREIMKIAQDPVSLET 285
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + P LKE++ ++ +L +RE+++++L +
Sbjct: 286 PIGEEEDSHLGD----FIPDDDAP-APAEAAAYSLLKEQIEDVLG-SLNDREQKVLKLRF 339
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ K ++RER+RQ+ AL KL+H +R K+L L
Sbjct: 340 GLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 387
[228][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 76.6 bits (187), Expect = 1e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +++ +KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E+ + LKE++ +++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGDFIEDQDATSPAEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 320 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[229][TOP]
>UniRef100_C4C6T9 RNA polymerase sigma factor n=1 Tax=Sebaldella termitidis ATCC
33386 RepID=C4C6T9_9FUSO
Length = 387
Score = 76.6 bits (187), Expect = 1e-12
Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRN-AQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ I+ ++ L+E G T + +AK L + KV++ E SL+
Sbjct: 225 IRIPVHMIETINKIKKESRIILQETGKEATAEELAKKLEIPVDKVKSILEMNQDPISLET 284
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD FV D + N P+ LKE+++ ++ TL ERE ++R Y
Sbjct: 285 PVGSEEDSELGD----FVEDDKFLN-PYDATTRVLLKEQLDGVLK-TLSEREEMVLRYRY 338
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD T EE+ K ++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 339 GLDDGSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRRKKLE 383
[230][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
16047 RepID=C2EK73_9LACO
Length = 370
Score = 76.6 bits (187), Expect = 1e-12
Identities = 52/165 (31%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LI+ + L++ G PT + I +N+ KVR+ + + SL+
Sbjct: 208 IRIPVHMVETINKLIKIQRQLLQDLGREPTPEEIGAEMNVPTNKVRDILKIAQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + + P LKE++ +++ TL +RE ++RL +
Sbjct: 268 PIGEEDDSHLGD----FIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRF 321
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD + T EE+ K G++RER+RQ+ AL KL+H +R +L+
Sbjct: 322 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLK 366
[231][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 76.6 bits (187), Expect = 1e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G PT + I +++ +KVR + + SL+
Sbjct: 206 IRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPTEKVREILKIAQEPVSLET 265
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E+ + LKE++ +++ TL +RE ++RL +
Sbjct: 266 PIGEEDDSHLGDFIEDQDATSPAEHAAYE-----LLKEQLEDVLD-TLTDREENVLRLRF 319
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 320 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[232][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
DSM 15897 RepID=UPI000196B4EB
Length = 418
Score = 76.3 bits (186), Expect = 2e-12
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRL-EERGITPTIDIIAKNLN-MTQKKVRNATEAINKVFSLD 405
+R+P H+ E ++ + Q +L +E G PT + IA+ ++ MT KVR I K+ SL+
Sbjct: 254 IRIPVHMVETINKLTRIQRQLVQELGREPTAEEIAEKMDGMTPAKVRE----IQKI-SLE 308
Query: 404 RETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLY 225
+ + G D++ + + P LK+E+N+++ + L +RE +++RL
Sbjct: 309 PVSLETPIGEEDDSHLGDFIEDEGAMSPDDYASNELLKDELNEVL-LELTDREEKVLRLR 367
Query: 224 YGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
+GLD + T EE+ K ++RER+RQ+ AL KLKH +R K L+ L
Sbjct: 368 FGLDDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPSRSKRLKDFL 416
[233][TOP]
>UniRef100_Q2NAR6 RNA polymerase sigma factor n=1 Tax=Erythrobacter litoralis
HTCC2594 RepID=Q2NAR6_ERYLH
Length = 675
Score = 76.3 bits (186), Expect = 2e-12
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ L E+G PT + +A+ L+M +KVR + + SL+
Sbjct: 512 IRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLET 571
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + IP + LKE V +++ +L RE ++R+ +
Sbjct: 572 PIGDEEDSHLGD----FIEDKNAI-IPVDAAIQANLKETVTRVL-ASLTPREERVLRMRF 625
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ T EE+ ++ ++RER+RQ+ AL KLKH +R +++ + L
Sbjct: 626 GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFL 673
[234][TOP]
>UniRef100_Q2G651 RNA polymerase sigma factor n=1 Tax=Novosphingobium aromaticivorans
DSM 12444 RepID=Q2G651_NOVAD
Length = 667
Score = 76.3 bits (186), Expect = 2e-12
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ L E+G PT + +A+ L+M +KVR + + SL+
Sbjct: 504 IRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLET 563
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + IP + LKE V +++ +L RE ++R+ +
Sbjct: 564 PIGDEEDSHLGD----FIEDKNAI-IPVDAAIQANLKETVTRVL-ASLTPREERVLRMRF 617
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ T EE+ ++ ++RER+RQ+ AL KLKH +R +++ + L
Sbjct: 618 GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFL 665
[235][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 76.3 bits (186), Expect = 2e-12
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P + I ++M +KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRIQRQMLQDLGREPMPEEIGAEMDMPTEKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E+ + LKE++ +++ TL +RE ++RL +
Sbjct: 270 PIGEEDDSHLGDFIEDQDATSPAEHAAYE-----LLKEQLESVLD-TLTDREENVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 324 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
[236][TOP]
>UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9KZ85_THERP
Length = 369
Score = 76.3 bits (186), Expect = 2e-12
Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEE-RGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E ++ I+ +RL++ PT +A+ L+M ++K+R EA SL+
Sbjct: 207 IRLPVHVGETINRIKKISHRLQQILEREPTQLEVARALDMPEEKIRQILEAARLPVSLEA 266
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G GD + + +++ P + L++++ + ++ L ERER I+ L Y
Sbjct: 267 PI-----GQDGDAFLGDFIEDETQPAPLEIASQQLLRQQLEEALS-RLTERERRIIILRY 320
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ + G++RER+RQ+ AL KL+H + + L L
Sbjct: 321 GLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPSCSRFLRGYL 368
[237][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 76.3 bits (186), Expect = 2e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ ++E G P + IA+ ++M++ KVR + + SL+
Sbjct: 198 IRIPVHMVETINKLIRVSRQLVQELGREPLPEEIAEQMDMSEDKVREILKIAQEPVSLET 257
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G D++ + Q P LK ++ ++++ +L RE++++RL +
Sbjct: 258 PI-----GEEDDSHLGDFIEDQDAKPPADAAAFELLKGQLEEVLD-SLTPREQKVLRLRF 311
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD K T EE+ K G++RER+RQ+ AL KL+H R K L+ L
Sbjct: 312 GLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRHPMRSKRLKDYL 359
[238][TOP]
>UniRef100_B0S1K1 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 29328
RepID=B0S1K1_FINM2
Length = 388
Score = 76.3 bits (186), Expect = 2e-12
Identities = 58/172 (33%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L++ G PT + IAK + + +KVR + + SL+
Sbjct: 226 IRIPVHMVETINRLVRIERQLLQDLGRDPTNEEIAKEMGIEVEKVREVRKIAQEPVSLET 285
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA----LKEEVNKLINVTLVEREREIV 234
+ GD F+ D + I DE A L+EE+ ++N TL ERER+++
Sbjct: 286 PIGEEEDSHLGD----FIEDDTA-----IAPDEAANFTMLREELEGILN-TLNERERKVL 335
Query: 233 RLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GL D T EE+ K ++RER+RQ+ AL KLKH +R ++L+ L
Sbjct: 336 ALRFGLVDGTPRTLEEVGKDFDVTRERIRQIEAKALRKLKHPSRSQKLKDFL 387
[239][TOP]
>UniRef100_A9WI86 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WI86_CHLAA
Length = 360
Score = 76.3 bits (186), Expect = 2e-12
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLE-ERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP HL E + +R A YRLE E PT + +A LNM+ +KV+ A + SL++
Sbjct: 198 IRLPVHLSESIVHLRRAIYRLEQELEREPTAEELAHALNMSVRKVKRLIRASTQPISLEQ 257
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G +T +AD+ + P ++ L E+ +N L ERER+I++L Y
Sbjct: 258 PLNNEQEGRVSET----LADETVAS-PMEIAEQKMLHAELTAALN-ELPERERKILQLRY 311
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ G++RER RQ+ AL +L+H + + L + L
Sbjct: 312 GLIDGQRRTLEEVGATFGITRERTRQIEAEALRRLRHPSVGQRLHSYL 359
[240][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NGG2_ROSCS
Length = 405
Score = 76.3 bits (186), Expect = 2e-12
Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E ++ + R+++ G PT D IA L + +KVR EA + SL+
Sbjct: 243 IRLPVHVGETINRVMRTSNRIQQTTGRDPTPDEIALELGIPVEKVRRVLEAARQTISLET 302
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
P + + D F+ D + P L+E+++ + L ERER I++L Y
Sbjct: 303 PIGPEGDSVLAD----FIEDGKGAT-PMESASSHILREQIDSALE-KLPERERRIIQLRY 356
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKH 114
GL D T EE+ + G++RER+RQ+ L KL+H
Sbjct: 357 GLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRH 393
[241][TOP]
>UniRef100_Q1N7S8 RNA polymerase sigma factor n=1 Tax=Sphingomonas sp. SKA58
RepID=Q1N7S8_9SPHN
Length = 682
Score = 76.3 bits (186), Expect = 2e-12
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ L E+G PT + +A+ L+M +KVR + + SL+
Sbjct: 519 IRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLET 578
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + IP + LKE V +++ +L RE ++R+ +
Sbjct: 579 PIGDEEDSHLGD----FIEDKNAI-IPVDAAIQANLKETVTRVL-ASLTPREERVLRMRF 632
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ T EE+ ++ ++RER+RQ+ AL KLKH +R +++ + L
Sbjct: 633 GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFL 680
[242][TOP]
>UniRef100_Q091D4 RNA polymerase sigma factor n=1 Tax=Stigmatella aurantiaca DW4/3-1
RepID=Q091D4_STIAU
Length = 706
Score = 76.3 bits (186), Expect = 2e-12
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++Y ++E G PT + IA+ + + KVR + + SL+
Sbjct: 543 IRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLET 602
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ DK + P V L E+ K++ TL RE +++R+ +
Sbjct: 603 PIGEEEDSHLGD----FIEDKSLVS-PADAVINMNLAEQTRKVL-ATLTPREEKVLRMRF 656
Query: 221 GLDKKC-LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ +K T EE+ + ++RER+RQ+ AL KL+H +R K L + +
Sbjct: 657 GIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLRSFV 704
[243][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 76.3 bits (186), Expect = 2e-12
Identities = 52/165 (31%), Positives = 92/165 (55%), Gaps = 2/165 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IAK +++ +VR + + SL+
Sbjct: 171 IRIPVHMVETINKLIRVSRQLLQEFGREPNPEEIAKEMDIPVDRVREIMKIAQEPVSLET 230
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E +I LKE++ +++ TL RE +++RL +
Sbjct: 231 PIGEEEDSHLGDFIEDQDAPAPAEAASFI-----LLKEQLEEVLE-TLTAREMKVLRLRF 284
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELE 90
GLD + T EE+ + G++RER+RQ+ AL KL+H +R K+L+
Sbjct: 285 GLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLK 329
[244][TOP]
>UniRef100_P71106 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
RepID=P71106_CHLAU
Length = 346
Score = 76.3 bits (186), Expect = 2e-12
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLE-ERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP HL E + +R A YRLE E PT + +A LNM+ +KV+ A + SL++
Sbjct: 184 IRLPVHLSESIVHLRRAIYRLEQELEREPTAEELAHALNMSVRKVKRLIRASTQPISLEQ 243
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
G +T +AD+ + P ++ L E+ +N L ERER+I++L Y
Sbjct: 244 PLNNEQEGRVSET----LADETVAS-PMEIAEQKMLHAELTAALN-ELPERERKILQLRY 297
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL D + T EE+ G++RER RQ+ AL +L+H + + L + L
Sbjct: 298 GLIDGQRRTLEEVGATFGITRERTRQIEAEALRRLRHPSVGQRLHSYL 345
[245][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 76.3 bits (186), Expect = 2e-12
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 8/170 (4%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNL-NMTQKKVRNATEAINKVFSLD 405
+R+P H+ E ++ + Q L + G PT + IA + N+T +KVR I K+ +LD
Sbjct: 294 IRIPVHMVETINKLTRIQRSLVQTLGREPTAEEIAAEMENITPEKVRE----IQKI-ALD 348
Query: 404 RETFPSLNGLPGDTY-HNFVADKQSENIPWIGVDEWA----LKEEVNKLINVTLVERERE 240
+ + G D++ +F+ DK + + DE+A LKEE+ K++ L ERE +
Sbjct: 349 PVSLETPIGEEDDSHLGDFIEDKDA-----LSPDEYANNQLLKEEI-KMVLEGLTEREEK 402
Query: 239 IVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKEL 93
++RL +GL D + T EE+ K ++RER+RQ+ AL KLKH R K L
Sbjct: 403 VLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRL 452
[246][TOP]
>UniRef100_C5EQH6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EQH6_9FIRM
Length = 409
Score = 76.3 bits (186), Expect = 2e-12
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLSLIRNAQYRLEER-GITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+RLP H+ E ++ IR AQ L R G P+ + IA+ + M +K+V +A SL+
Sbjct: 246 IRLPVHMVEAVNKIRRAQRSLSVRLGREPSTEEIAEEVGMPEKRVTELIQASGDTVSLET 305
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ G +FVAD + + + + L+EE++ ++ L RERE++ L +
Sbjct: 306 P----VGDEEGSNLGDFVADDANASTE-DKAESFLLREEIDAMLQ-GLNPREREVIILRF 359
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GL+ LT EE+ +R ++RER+RQ+ AL KL++ ++ +++ L
Sbjct: 360 GLETGHPLTLEEVGRRFNVTRERIRQIETAALRKLRNPSKSRKIRDFL 407
[247][TOP]
>UniRef100_C2HGK9 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 53516
RepID=C2HGK9_PEPMA
Length = 389
Score = 76.3 bits (186), Expect = 2e-12
Identities = 58/172 (33%), Positives = 94/172 (54%), Gaps = 6/172 (3%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R + L++ G PT + IAK + + +KVR + + SL+
Sbjct: 227 IRIPVHMVETINRLVRIERQLLQDLGRDPTNEEIAKEMGIEVEKVREVRKIAQEPVSLET 286
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWA----LKEEVNKLINVTLVEREREIV 234
+ GD F+ D + I DE A L+EE+ ++N TL ERER+++
Sbjct: 287 PIGEEEDSHLGD----FIEDDTA-----IAPDEAANFTMLREELEGILN-TLNERERKVL 336
Query: 233 RLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
L +GL D T EE+ K ++RER+RQ+ AL KLKH +R ++L+ L
Sbjct: 337 ALRFGLVDGTPRTLEEVGKDFDVTRERIRQIEAKALRKLKHPSRSQKLKDFL 388
[248][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 76.3 bits (186), Expect = 2e-12
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR + L++ G P + I ++M +KVR + + SL+
Sbjct: 210 IRIPVHMVETINKLIRIQRQMLQDLGREPMPEEIGAEMDMPTEKVREILKIAQEPVSLET 269
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD + A +E+ + LKE++ +++ TL +RE ++RL +
Sbjct: 270 PIGEEDDSHLGDFIEDQDATSPAEHAAYE-----LLKEQLESVLD-TLTDREENVLRLRF 323
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
GLD + T EE+ K G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 324 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
[249][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
RepID=B6FR93_9CLOT
Length = 370
Score = 76.3 bits (186), Expect = 2e-12
Identities = 52/168 (30%), Positives = 95/168 (56%), Gaps = 2/168 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ LIR ++ L+E G P + IA+ L+M ++VR + + SL+
Sbjct: 208 IRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAEELDMPVERVREILKISQEPVSLET 267
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P LKE++ ++++ TL +RE++++RL +
Sbjct: 268 PIGEEEDSHLGD----FIQD-DNVPVPAEAAAATLLKEQLGEVLD-TLTDREQKVLRLRF 321
Query: 221 GL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 81
G+ D + T EE+ K ++RER+RQ+ AL KL+H +R ++L L
Sbjct: 322 GMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 369
[250][TOP]
>UniRef100_A8RMR2 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8RMR2_9CLOT
Length = 378
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/170 (31%), Positives = 96/170 (56%), Gaps = 2/170 (1%)
Frame = -3
Query: 578 LRLPTHLHERLS-LIRNAQYRLEERGITPTIDIIAKNLNMTQKKVRNATEAINKVFSLDR 402
+R+P H+ E ++ L+R ++ L+E G PT + IA L++ ++V + + SL+
Sbjct: 215 IRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARLDLPVERVSEIMKMSQEPVSLET 274
Query: 401 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 222
+ GD F+ D + +P L E++ +++ +TL ERE++++RL +
Sbjct: 275 PIGEEEDSHLGD----FIQD-DNVLVPQDAAAFTLLHEQLMEVL-LTLTEREQKVLRLRF 328
Query: 221 GLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 75
GLD + T EE+ K+ ++RER+RQ+ AL KL+H +R K+L+ L E
Sbjct: 329 GLDDGRPRTLEEVGKQFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLDE 378