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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 180 bits (457), Expect = 6e-44
Identities = 87/115 (75%), Positives = 105/115 (91%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGIN--LKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
LTP+ P+SL+ K+GIN LKPSEV+ADP+AETAEE LIKQFM++DLEKVL+SLN REKQV
Sbjct: 464 LTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQV 523
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
IRWR+G++DGR +TLQEIGE+M VSRER+RQIE+CAFRKLKNK+R HLQQY+VS
Sbjct: 524 IRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 578
[2][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 180 bits (457), Expect = 6e-44
Identities = 87/115 (75%), Positives = 105/115 (91%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGIN--LKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
LTP+ P+SL+ K+GIN LKPSEV+ADP+AETAEE LIKQFM++DLEKVL+SLN REKQV
Sbjct: 121 LTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQV 180
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
IRWR+G++DGR +TLQEIGE+M VSRER+RQIE+CAFRKLKNK+R HLQQY+VS
Sbjct: 181 IRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS 235
[3][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 174 bits (441), Expect = 4e-42
Identities = 86/115 (74%), Positives = 104/115 (90%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGIN--LKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
L+P+ P+SL+ K+G+N LKPSEV+ADPEA T+E+ LIK+FM++DL+KVLDSL REKQV
Sbjct: 458 LSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQV 517
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
IRWRFGM+DGRM+TLQEIGEMM VSRERVRQIE+ AFRKLKNKKR NHLQQY+V+
Sbjct: 518 IRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 572
[4][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 174 bits (441), Expect = 4e-42
Identities = 86/115 (74%), Positives = 104/115 (90%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGIN--LKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
L+P+ P+SL+ K+G+N LKPSEV+ADPEA T+E+ LIK+FM++DL+KVLDSL REKQV
Sbjct: 456 LSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQV 515
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
IRWRFGM+DGRM+TLQEIGEMM VSRERVRQIE+ AFRKLKNKKR NHLQQY+V+
Sbjct: 516 IRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570
[5][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 173 bits (439), Expect = 8e-42
Identities = 86/115 (74%), Positives = 103/115 (89%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGIN--LKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
L+P+ P+SL+ K+G+N LKPSEV+ADPEA T E+ LIK+FM++DL+KVLDSL REKQV
Sbjct: 456 LSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQV 515
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
IRWRFGM+DGRM+TLQEIGEMM VSRERVRQIE+ AFRKLKNKKR NHLQQY+V+
Sbjct: 516 IRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570
[6][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 172 bits (437), Expect = 1e-41
Identities = 85/115 (73%), Positives = 104/115 (90%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGINL--KPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
L+P+ P+SL+ K+GINL KPSEV+ADPEAET+E+ L+KQFM++DL+KVLDSL+ REKQV
Sbjct: 456 LSPKPPRSLDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKVLDSLSTREKQV 515
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
IRWRFGM+DGRM+TLQEIGE M VSRERVRQI+ AFRKLKNKKR +HLQQY+V+
Sbjct: 516 IRWRFGMEDGRMKTLQEIGETMGVSRERVRQIDTSAFRKLKNKKRNSHLQQYLVA 570
[7][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 170 bits (430), Expect = 8e-41
Identities = 82/115 (71%), Positives = 103/115 (89%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGIN--LKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
LTP+ P+SL+ K+G+N LKPSEV+ADPEAETAEE L+KQFMK+DLEKVL++LN RE QV
Sbjct: 455 LTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQV 514
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
+RWRFG++DGRM+TLQEIGE+M VSRER+RQIE+ AFRKLKNKKR L+QY+++
Sbjct: 515 VRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLLA 569
[8][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 167 bits (422), Expect = 7e-40
Identities = 80/113 (70%), Positives = 102/113 (90%), Gaps = 2/113 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVG--INLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
+TP+ P+SL+ K+G +NLKPSEV+ADPEAETAE+ L KQFM++DLEKVLD+L+ REKQV
Sbjct: 461 MTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQV 520
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
IRWRFG++DGRM+TLQEIGE+M VSRER+RQIE+ AFRKL+NKK+ +LQQY+
Sbjct: 521 IRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573
[9][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 163 bits (413), Expect = 8e-39
Identities = 82/115 (71%), Positives = 98/115 (85%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGIN--LKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
LTP+ P+SL+ K+G N LK SEV ADPEAETAE+ L+K+FMKKDLE+VL+SL+ RE QV
Sbjct: 450 LTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQV 509
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
IRWRFGM+DGRM+TLQEIGE+M VSRER+RQIE AFRKLKNK R L+QY+VS
Sbjct: 510 IRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYLVS 564
[10][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 160 bits (404), Expect = 9e-38
Identities = 81/115 (70%), Positives = 96/115 (83%), Gaps = 2/115 (1%)
Frame = -3
Query: 579 LTPETPKSLETKVGIN--LKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQV 406
LTP+ P+SL+ K+G N LK SEV ADPEAETAE+ L+K+FMKKDL KVL SL+ RE QV
Sbjct: 453 LTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQV 512
Query: 405 IRWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
+RWRFGM+DGRM+TLQEIGE+M VSRERVRQIE AFRKLKNK R L+QY+V+
Sbjct: 513 VRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYMVA 567
[11][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 124 bits (311), Expect = 5e-27
Identities = 63/112 (56%), Positives = 85/112 (75%), Gaps = 1/112 (0%)
Frame = -3
Query: 573 PETPKSLETKVG-INLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL++K+G ++ EV ADP AETAEE L + MK+D+ K LD+L RE+QV+
Sbjct: 449 PKYSVSLDSKIGSTDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTL 508
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVVS 241
RFG++DGR+RTLQEIG M VSRER+RQIE+ AFRKL++KKR N L+ Y+V+
Sbjct: 509 RFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLVT 560
[12][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 124 bits (310), Expect = 7e-27
Identities = 63/111 (56%), Positives = 84/111 (75%), Gaps = 1/111 (0%)
Frame = -3
Query: 573 PETPKSLETKVG-INLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL++K+G ++ EV ADP AETAEE L + MK+D+ K LD+L RE+QV+
Sbjct: 449 PKYSVSLDSKIGSTDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTL 508
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVV 244
RFG++DGR+RTLQEIG M VSRER+RQIE+ AFRKL++KKR N L+ Y+V
Sbjct: 509 RFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[13][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 124 bits (310), Expect = 7e-27
Identities = 63/111 (56%), Positives = 84/111 (75%), Gaps = 1/111 (0%)
Frame = -3
Query: 573 PETPKSLETKVG-INLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL++K+G ++ EV ADP AETAEE L + MK+D+ K LD+L RE+QV+
Sbjct: 449 PKYSVSLDSKIGSTDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTL 508
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVV 244
RFG++DGR+RTLQEIG M VSRER+RQIE+ AFRKL++KKR N L+ Y+V
Sbjct: 509 RFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[14][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 124 bits (310), Expect = 7e-27
Identities = 63/111 (56%), Positives = 84/111 (75%), Gaps = 1/111 (0%)
Frame = -3
Query: 573 PETPKSLETKVG-INLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL++K+G ++ EV ADP AETAEE L + MK+D+ K LD+L RE+QV+
Sbjct: 448 PKYSVSLDSKIGSTDMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTL 507
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVV 244
RFG++DGR+RTLQEIG M VSRER+RQIE+ AFRKL++KKR N L+ Y+V
Sbjct: 508 RFGLEDGRIRTLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 558
[15][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 121 bits (303), Expect = 4e-26
Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Frame = -3
Query: 573 PETPKSLETKVG-INLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL++K+G ++ EV ADP AETAEE L + MKKD+ K LD+L REKQV+
Sbjct: 123 PKYSVSLDSKIGSTDMTYQEVTADPSAETAEEMLNRMSMKKDVHKALDTLTTREKQVVVL 182
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVV 244
RFG++D R+RTLQEIG +M VSRER+RQIE+ AFRKL++KKR L+ Y+V
Sbjct: 183 RFGLEDDRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKRVKALKDYLV 233
[16][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 120 bits (301), Expect = 8e-26
Identities = 62/111 (55%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Frame = -3
Query: 573 PETPKSLETKVG-INLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL++K+G ++ EV ADP AETAEE L + MKKD+ LD+L REKQV+
Sbjct: 424 PKYSVSLDSKIGSTDMTYQEVTADPSAETAEEMLNRMSMKKDVHMALDTLTTREKQVVVL 483
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVV 244
RFG++DGR+RTLQEIG +M VSRER+RQIE+ AFRKL++KK+ L+ Y+V
Sbjct: 484 RFGLEDGRIRTLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKALKDYLV 534
[17][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 116 bits (290), Expect = 1e-24
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Frame = -3
Query: 573 PETPKSLETKVGI-NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL +KVG ++ E+ D ETAEE L + MK+D+++ LD L+ RE+QVIR+
Sbjct: 425 PKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRY 484
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGMDDGR+RTL +IG +M VSRER+RQIE AFRKL+ +K+ LQ Y+
Sbjct: 485 RFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[18][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 116 bits (290), Expect = 1e-24
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Frame = -3
Query: 573 PETPKSLETKVGI-NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL +KVG ++ E+ D ETAEE L + MK+D+++ LD L+ RE+QVIR+
Sbjct: 228 PKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRY 287
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGMDDGR+RTL +IG +M VSRER+RQIE AFRKL+ +K+ LQ Y+
Sbjct: 288 RFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 337
[19][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 116 bits (290), Expect = 1e-24
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Frame = -3
Query: 573 PETPKSLETKVGI-NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL +KVG ++ E+ D ETAEE L + MK+D+++ LD L+ RE+QVIR+
Sbjct: 382 PKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRY 441
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGMDDGR+RTL +IG +M VSRER+RQIE AFRKL+ +K+ LQ Y+
Sbjct: 442 RFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 491
[20][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 116 bits (290), Expect = 1e-24
Identities = 58/110 (52%), Positives = 79/110 (71%), Gaps = 1/110 (0%)
Frame = -3
Query: 573 PETPKSLETKVGI-NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ SL +KVG ++ E+ D ETAEE L + MK+D+++ LD L+ RE+QVIR+
Sbjct: 425 PKYTVSLTSKVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRY 484
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGMDDGR+RTL +IG +M VSRER+RQIE AFRKL+ +K+ LQ Y+
Sbjct: 485 RFGMDDGRLRTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[21][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 110 bits (274), Expect = 1e-22
Identities = 56/108 (51%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
Frame = -3
Query: 564 PKSLETKVGINL--KPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG ++ K SE++AD +E+ E + K+ KKDL++VLD+L REKQV+R R+
Sbjct: 386 PTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRY 445
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
G+DDGRM++L E+GE S+SRERVRQIE A RKL+ R HL+ Y+
Sbjct: 446 GLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 493
[22][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 110 bits (274), Expect = 1e-22
Identities = 56/108 (51%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
Frame = -3
Query: 564 PKSLETKVGINL--KPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG ++ K SE++AD +E+ E + K+ KKDL++VLD+L REKQV+R R+
Sbjct: 483 PTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRY 542
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
G+DDGRM++L E+GE S+SRERVRQIE A RKL+ R HL+ Y+
Sbjct: 543 GLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590
[23][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 109 bits (273), Expect = 1e-22
Identities = 57/110 (51%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Frame = -3
Query: 573 PETPKSLETKVGI-NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ S +KVG ++ E++ D AETAEE L + MKKD+ LDSL+ R+KQV+R+
Sbjct: 412 PKYSVSFTSKVGCTDVTYQEIMPDTSAETAEETLHRWLMKKDVNTALDSLSPRKKQVMRY 471
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++ GR RTL +IG++M VSRER+RQIE AFRKL++K R LQ Y+
Sbjct: 472 RFGIEGGRARTLHDIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQHYL 521
[24][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 108 bits (269), Expect = 4e-22
Identities = 57/110 (51%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Frame = -3
Query: 573 PETPKSLETKVGI-NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
P+ S +KVG ++ E++ D AETAEE L + MKKD+ L+SL+ REK V+R+
Sbjct: 413 PKYSVSFTSKVGCTDVTYQEIMPDTSAETAEEVLHRWLMKKDVNTALESLSPREKLVMRY 472
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++ GR RTL +IG++M VSRER+RQIE AFRKL++KKR LQ Y+
Sbjct: 473 RFGIEGGRPRTLHDIGQIMGVSRERIRQIELGAFRKLRSKKRVQSLQHYL 522
[25][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 104 bits (260), Expect = 4e-21
Identities = 53/110 (48%), Positives = 82/110 (74%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLEKVLDSL+ RE+ V+R
Sbjct: 280 QLPISLETPIGKE-EDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRL 338
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 339 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 388
[26][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 104 bits (260), Expect = 4e-21
Identities = 53/110 (48%), Positives = 82/110 (74%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLEKVLDSL+ RE+ V+R
Sbjct: 282 QLPISLETPIGKE-EDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRL 340
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 341 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 390
[27][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 104 bits (260), Expect = 4e-21
Identities = 53/110 (48%), Positives = 82/110 (74%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLEKVLDSL+ RE+ V+R
Sbjct: 281 QLPISLETPIGKE-EDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRL 339
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 340 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
[28][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 102 bits (255), Expect = 2e-20
Identities = 51/110 (46%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPS--EVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+TP S++ +G S E++AD + E+ E+ LI+Q +K+D++ VL +LN RE++V+R
Sbjct: 477 KTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQVLKQDVDGVLCTLNPREREVLRL 536
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDG+ RTL+EIG + V+RER+RQIEA A RKL+ R L++Y+
Sbjct: 537 RFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRNGVLREYL 586
[29][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 102 bits (253), Expect = 3e-20
Identities = 49/110 (44%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPS--EVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P S+E +G + + E++AD + ++ E+ ++KQ M++D+E VL +LN RE++V+R
Sbjct: 463 KAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGVLRTLNPREREVLRL 522
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR +TL+EIG++ V+RER+RQIEA A RKL+ R + L++Y+
Sbjct: 523 RFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSILREYL 572
[30][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 101 bits (252), Expect = 4e-20
Identities = 51/110 (46%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLE VLD+L+ RE+ V+R
Sbjct: 266 QLPISLETPIGKE-EDSRLGDFIEADGETPEDQVSKSLLREDLENVLDTLSARERDVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 325 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 374
[31][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 101 bits (252), Expect = 4e-20
Identities = 51/110 (46%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLE VLD+L+ RE+ V+R
Sbjct: 278 QLPISLETPIGKE-EDSRLGDFIESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRL 336
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 337 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 386
[32][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 101 bits (252), Expect = 4e-20
Identities = 51/110 (46%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLE VLD+L+ RE+ V+R
Sbjct: 271 QLPISLETPIGKE-EDSRLGDFIEADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRL 329
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 330 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 379
[33][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 101 bits (252), Expect = 4e-20
Identities = 51/110 (46%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLE VLD+L+ RE+ V+R
Sbjct: 282 QLPISLETPIGKE-EDSRLGDFIESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRL 340
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 341 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 390
[34][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 267 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 325
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 326 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 375
[35][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 307 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[36][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 307 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[37][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 305 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 363
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 364 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 413
[38][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 268 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 326
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 327 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 376
[39][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 307 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[40][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 307 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[41][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 307 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[42][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 316 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 374
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 375 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424
[43][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 100 bits (249), Expect = 8e-20
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 307 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 366 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[44][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 100 bits (248), Expect = 1e-19
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLE VLD+L+ RE+ V++
Sbjct: 262 QLPISLETPIGKE-EDSRLGDFIESDGETPEDQVSKSLLREDLETVLDTLSPRERDVLKL 320
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 321 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 370
[45][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 99.8 bits (247), Expect = 1e-19
Identities = 50/110 (45%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VL+SL+ RE+ V+R
Sbjct: 277 QLPISLETPIGKE-EDSRLGDFIESDGETPEDEVSKNLLREDLESVLNSLSPRERDVLRL 335
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 336 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 385
[46][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 99.0 bits (245), Expect = 2e-19
Identities = 50/110 (45%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + E ET EE++ K +++DLE VL++L RE+ V++
Sbjct: 295 QLPISLETPIGKE-EDSRLGDFIESEGETPEERVAKVLLREDLESVLETLTPRERDVLKL 353
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 354 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
[47][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 98.6 bits (244), Expect = 3e-19
Identities = 49/110 (44%), Positives = 81/110 (73%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VL++L+ RE+ V+R
Sbjct: 291 QLPISLETPIGKE-EDSRLGDFIEADGETPEDKVAKNLLREDLEAVLNTLSPRERDVLRL 349
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 350 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 399
[48][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 98.6 bits (244), Expect = 3e-19
Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+++ K +++DLE VLD+L+ RE+ V+R
Sbjct: 270 QLPISLETPIGKE-EDSRLGDFIEADGENPEDEVSKNLLREDLENVLDTLSPRERDVLRL 328
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 329 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 378
[49][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 98.2 bits (243), Expect = 4e-19
Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VL +L+ RE+ V+R
Sbjct: 290 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRL 348
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 349 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[50][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 98.2 bits (243), Expect = 4e-19
Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VL +L+ RE+ V+R
Sbjct: 295 QLPISLETPIGKE-EDSRLGDFIESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRL 353
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 354 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
[51][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 98.2 bits (243), Expect = 4e-19
Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VL +L+ RE+ V+R
Sbjct: 290 QLPISLETPIGKE-EDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRL 348
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 349 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[52][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 97.4 bits (241), Expect = 7e-19
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VLD+L RE+ V+R
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[53][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 97.4 bits (241), Expect = 7e-19
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VLD+L RE+ V+R
Sbjct: 254 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRL 313
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 314 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[54][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 97.4 bits (241), Expect = 7e-19
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VLD+L RE+ V+R
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[55][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 97.4 bits (241), Expect = 7e-19
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VLD+L RE+ V+R
Sbjct: 254 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRL 313
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 314 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[56][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 97.4 bits (241), Expect = 7e-19
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 372
[57][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 97.4 bits (241), Expect = 7e-19
Identities = 54/112 (48%), Positives = 73/112 (65%), Gaps = 3/112 (2%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP---SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIR 400
+ P SL +G K + L D AE E+ K +K+DLE VL++LN RE+ V+R
Sbjct: 404 QAPVSLAQTMGGENKGRTIEDTLIDANAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLR 463
Query: 399 WRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYVV 244
R+G+DDGR++TL+EIG + SV+RER+RQIEA A RKLK R LQ+Y V
Sbjct: 464 LRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNQVLQEYFV 515
[58][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 97.1 bits (240), Expect = 9e-19
Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLE VL +L+ RE+ V++
Sbjct: 309 QLPISLETPIGKE-EDSRLGDFIESDGETPEDQVSKHLLREDLETVLCTLSPRERDVLKL 367
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 368 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 417
[59][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 97.1 bits (240), Expect = 9e-19
Identities = 49/110 (44%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+Q+ K +++DLE VL +L+ RE+ V++
Sbjct: 269 QLPISLETPIGKE-EDSRLGDFIESDGETPEDQVSKNLLREDLETVLCTLSPRERDVLKL 327
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 328 RYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 377
[60][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 96.7 bits (239), Expect = 1e-18
Identities = 48/110 (43%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + ET E+++ K +++DLE VL++L RE+ V++
Sbjct: 294 QLPISLETPIGKE-EDSRLGDFIESDGETPEDRVAKVLLREDLESVLETLTARERDVLKL 352
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ +V+RER+RQIEA A RKL++ R + L++Y+
Sbjct: 353 RYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 402
[61][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 96.7 bits (239), Expect = 1e-18
Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 3/110 (2%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV---LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIR 400
+ P SL +G + K V L D AE E+ K +K+DLE VL++LN RE+ V+R
Sbjct: 218 QAPVSLAQTMGGDNKGRTVEDTLVDVTAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLR 277
Query: 399 WRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
R+G+DDGR++TL+EIG + SV+RER+RQIEA A RKLK R + LQ+Y
Sbjct: 278 LRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNSILQEY 327
[62][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 96.3 bits (238), Expect = 2e-18
Identities = 48/110 (43%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ E + +K+ LE VLD+L RE+ V+R
Sbjct: 227 QEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 286
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 287 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 336
[63][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 95.9 bits (237), Expect = 2e-18
Identities = 48/110 (43%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + EE + +K+ LE VLD+L RE+ V+R
Sbjct: 259 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTLTDREENVLRL 318
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 319 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[64][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
4571 RepID=A8YVM2_LACH4
Length = 356
Score = 95.9 bits (237), Expect = 2e-18
Identities = 47/110 (42%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VL++L RE+ V+R
Sbjct: 246 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRL 305
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 306 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 355
[65][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
DSM 20075 RepID=C9LZ42_LACHE
Length = 370
Score = 95.9 bits (237), Expect = 2e-18
Identities = 47/110 (42%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VL++L RE+ V+R
Sbjct: 260 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRL 319
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 320 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[66][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
RepID=C2KFH9_9LACO
Length = 370
Score = 95.9 bits (237), Expect = 2e-18
Identities = 47/110 (42%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VL++L RE+ V+R
Sbjct: 260 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRL 319
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 320 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[67][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
RepID=C2HPX4_LACAC
Length = 370
Score = 95.9 bits (237), Expect = 2e-18
Identities = 47/110 (42%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VL++L RE+ V+R
Sbjct: 260 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRL 319
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 320 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
[68][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
16047 RepID=C2EK73_9LACO
Length = 370
Score = 95.9 bits (237), Expect = 2e-18
Identities = 47/110 (42%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VL++L RE+ V+R
Sbjct: 260 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETLTDREENVLRL 319
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 320 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFM 369
[69][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 95.5 bits (236), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + MKK LE VLD+L RE+ V+R
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[70][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 95.5 bits (236), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + MKK LE VLD+L RE+ V+R
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[71][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 95.5 bits (236), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + MKK LE VLD+L RE+ V+R
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[72][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 95.5 bits (236), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + MKK LE VLD+L RE+ V+R
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[73][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 95.5 bits (236), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + MKK LE VLD+L RE+ V+R
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[74][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 95.5 bits (236), Expect = 3e-18
Identities = 45/89 (50%), Positives = 68/89 (76%)
Frame = -3
Query: 507 DPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRFGMDDGRMRTLQEIGEMMSVSR 328
+ + E+ EE + K ++ DLE V++SL+ RE+ V+R R+G+DDGR++TL+EIG++ SV+R
Sbjct: 338 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTR 397
Query: 327 ERVRQIEACAFRKLKNKKRANHLQQYVVS 241
ERVRQIEA A RKL+ R++ L+ YV S
Sbjct: 398 ERVRQIEAKAIRKLRQPYRSSILRDYVAS 426
[75][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[76][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[77][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 95.1 bits (235), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + E + +K+ LE VLD+L RE+ V+R
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 323
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 324 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[78][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[79][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 30 QEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 89
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 90 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 139
[80][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[81][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE+VLD+L RE+ V+R
Sbjct: 272 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRL 331
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G + V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 332 RFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 381
[82][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[83][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[84][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 232 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 291
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 292 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 341
[85][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[86][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 95.1 bits (235), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + MKK LE VLD+L RE+ V+R
Sbjct: 271 QEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 330
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 331 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 380
[87][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 95.1 bits (235), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + E + +K+ LE VLD+L RE+ V+R
Sbjct: 267 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 326
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 327 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[88][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[89][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[90][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 257 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 316
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 317 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 366
[91][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[92][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[93][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 95.1 bits (235), Expect = 3e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + E + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[94][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[95][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[96][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 95.1 bits (235), Expect = 3e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
[97][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 94.7 bits (234), Expect = 5e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + E + +K+ LE VLD+L RE+ V+R
Sbjct: 259 QEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 318
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 319 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[98][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 94.7 bits (234), Expect = 5e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE VLD+L RE+ V+R
Sbjct: 306 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 366 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[99][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 94.7 bits (234), Expect = 5e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE VLD+L RE+ V+R
Sbjct: 242 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 301
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 302 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 351
[100][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 94.7 bits (234), Expect = 5e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE VLD+L RE+ V+R
Sbjct: 306 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 366 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[101][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 94.7 bits (234), Expect = 5e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + E + +K+ LE VLD+L RE+ V+R
Sbjct: 259 QEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 318
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 319 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
[102][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 94.7 bits (234), Expect = 5e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE VLD+L RE+ V+R
Sbjct: 312 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 371
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 372 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 421
[103][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 94.7 bits (234), Expect = 5e-18
Identities = 48/110 (43%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + MKK LE VLD+L RE+ V+R
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRL 329
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 330 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
[104][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 94.7 bits (234), Expect = 5e-18
Identities = 47/110 (42%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K+ LE VLD+L RE+ V+R
Sbjct: 306 QEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLESVLDTLTDREENVLRL 365
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 366 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 415
[105][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 94.7 bits (234), Expect = 5e-18
Identities = 44/89 (49%), Positives = 69/89 (77%)
Frame = -3
Query: 507 DPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRFGMDDGRMRTLQEIGEMMSVSR 328
+ + E+ EE + K ++ DLE V++SL+ RE+ V+R R+G+DDGR++TL+EIG++ SV+R
Sbjct: 355 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTR 414
Query: 327 ERVRQIEACAFRKLKNKKRANHLQQYVVS 241
ERVRQIEA A RKL+ R++ L+ YV++
Sbjct: 415 ERVRQIEAKAIRKLRQPYRSSILRDYVLA 443
[106][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 94.7 bits (234), Expect = 5e-18
Identities = 44/89 (49%), Positives = 69/89 (77%)
Frame = -3
Query: 507 DPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRFGMDDGRMRTLQEIGEMMSVSR 328
+ + E+ EE + K ++ DLE V++SL+ RE+ V+R R+G+DDGR++TL+EIG++ SV+R
Sbjct: 355 EADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTR 414
Query: 327 ERVRQIEACAFRKLKNKKRANHLQQYVVS 241
ERVRQIEA A RKL+ R++ L+ YV++
Sbjct: 415 ERVRQIEAKAIRKLRQPYRSSILRDYVLA 443
[107][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 94.7 bits (234), Expect = 5e-18
Identities = 48/110 (43%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA T + + +K+ LE VLD+L +RE+ V+R
Sbjct: 267 QEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRL 326
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 327 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[108][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 94.4 bits (233), Expect = 6e-18
Identities = 48/110 (43%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPS--EVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A E + +K+ LE+VLD+L +RE+ V+R
Sbjct: 215 QEPVSLETPIGEENDSNLGDFIEDHDAPAPAEAAAYELLKEQLEEVLDTLTEREENVLRL 274
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGMDDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 275 RFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 324
[109][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 94.4 bits (233), Expect = 6e-18
Identities = 46/110 (41%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA++ + + +K+ LE V+D+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHAAYELLKEQLEDVIDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[110][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[111][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESVLDTLTDREENVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
[112][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EAE+ EE +++ L+ +L++L +RE++V+R
Sbjct: 248 QEPVSLETPIGEEDDSHLGDFITDEEAESPEESASFVLLREHLDGILNTLTEREEKVLRL 307
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 308 RFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYI 357
[113][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[114][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[115][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 323
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 324 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[116][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[117][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLESVLDTLTDREENVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
[118][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 94.0 bits (232), Expect = 8e-18
Identities = 46/91 (50%), Positives = 66/91 (72%)
Frame = -3
Query: 519 EVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRFGMDDGRMRTLQEIGEMM 340
E L D AE ++ K +K+DLE VL++L+ RE+ V+R R+GMDDGR++TL+EIG +
Sbjct: 479 ETLVDDHAEHPDDATGKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVF 538
Query: 339 SVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
SV+RER+RQIEA A RKL+ R L++Y+
Sbjct: 539 SVTRERIRQIEAKALRKLRQPSRNGILREYL 569
[119][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 261 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 320
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 321 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 370
[120][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[121][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 93.6 bits (231), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 352 QLPISLETPIGKE-EDSRLGDFIESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 410
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 411 RYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 460
[122][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[123][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[124][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 93.6 bits (231), Expect = 1e-17
Identities = 46/110 (41%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 256 QEPVSLETPIGEEDDSHLGDFIEDQDAQSPADHAAYELLKEQLEDVLDTLTDREENVLRL 315
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 316 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 365
[125][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 93.6 bits (231), Expect = 1e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D E ++ + + +K+ LE VLD+L RE+ V+R
Sbjct: 259 QEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 318
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 319 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 368
[126][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
[127][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[128][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 93.6 bits (231), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 335 QLPISLETPIGKE-EDSRLGDFIESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 393
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 394 RYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 443
[129][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[130][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[131][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[132][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[133][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[134][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[135][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[136][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[137][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[138][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 279 QEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 338
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 339 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
[139][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + +K+ LE VLD+L +RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIPDDEAPAPADAAAYELLKEQLEDVLDTLTEREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 367
[140][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[141][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEGDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[142][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[143][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[144][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 93.2 bits (230), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 270 QEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVLDTLTDREENVLRL 329
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 330 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 379
[145][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 362 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 420
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 421 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 470
[146][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 342 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 400
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 401 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
[147][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 326 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 384
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 385 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 434
[148][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A+ E +++ LE+VL+SL REK+V+R
Sbjct: 251 QEPVSLETPIGEEEDSHLGDFIEDEDAQAPAEAASFMLLREQLEEVLNSLTPREKRVLRL 310
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 311 RFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360
[149][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 331 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 389
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 390 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 439
[150][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 93.2 bits (230), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +K+ LE VLD+L RE+ V+R
Sbjct: 269 QEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEGVLDTLTDREENVLRL 328
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 329 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 378
[151][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 341 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 399
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 400 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 449
[152][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 342 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 400
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 401 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
[153][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 370 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 428
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 429 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 478
[154][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 349 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 407
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 408 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 457
[155][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
RepID=C9AAM5_ENTCA
Length = 368
Score = 93.2 bits (230), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[156][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
RepID=C8ZYV7_ENTGA
Length = 368
Score = 93.2 bits (230), Expect = 1e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[157][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 394 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 452
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 453 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 502
[158][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 338 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 396
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 397 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 446
[159][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 347 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 405
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 406 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 455
[160][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 360 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 418
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 419 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 468
[161][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 93.2 bits (230), Expect = 1e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 351 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRL 409
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 410 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 459
[162][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 92.8 bits (229), Expect = 2e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + +K+ LE VLD+L +RE+ V+R
Sbjct: 267 QEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRL 326
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 327 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[163][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 92.8 bits (229), Expect = 2e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + +K+ LE VLD+L +RE+ V+R
Sbjct: 265 QEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
[164][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 92.8 bits (229), Expect = 2e-17
Identities = 48/110 (43%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ LE+VL+SL RE++V+R
Sbjct: 278 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFTLLKEQLEEVLESLTPREEKVLRL 337
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 338 RFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 387
[165][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 92.8 bits (229), Expect = 2e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 309 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRL 367
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 368 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 417
[166][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 92.8 bits (229), Expect = 2e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + +K+ LE VLD+L +RE+ V+R
Sbjct: 266 QEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRL 325
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 326 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375
[167][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 92.8 bits (229), Expect = 2e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A ++ + +K+ LE VLD+L RE+ V+R
Sbjct: 251 QEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAAAYELLKEQLEDVLDTLTDREENVLRL 310
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 311 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 360
[168][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 92.8 bits (229), Expect = 2e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 309 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRL 367
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 368 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 417
[169][TOP]
>UniRef100_Q71HU9 RNA polymerase sigma factor (Fragment) n=1 Tax=Lactobacillus
delbrueckii subsp. lactis RepID=Q71HU9_LACDL
Length = 167
Score = 92.8 bits (229), Expect = 2e-17
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K L +VLD+L RE+ V+R
Sbjct: 57 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRL 116
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDG RTL+E+G + V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 117 RFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFL 166
[170][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 92.8 bits (229), Expect = 2e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + +K+ LE VLD+L +RE+ V+R
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTEREENVLRL 323
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 324 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
[171][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 92.8 bits (229), Expect = 2e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + Q +K+ LE VLD+L RE+ V+R
Sbjct: 268 QEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYQMLKEQLESVLDTLTDREENVLRL 327
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 328 RFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDFL 377
[172][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 92.8 bits (229), Expect = 2e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + +K+ LE VLD+L RE+ V+R
Sbjct: 267 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 326
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 327 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[173][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 92.8 bits (229), Expect = 2e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + +K+ LE VLD+L RE+ V+R
Sbjct: 279 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDREENVLRL 338
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 339 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
[174][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 92.8 bits (229), Expect = 2e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + +K+ LE VLD+L RE+ V+R
Sbjct: 279 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLESVLDTLTDREENVLRL 338
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 339 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
[175][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 92.4 bits (228), Expect = 2e-17
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + +K+ LE VLD+L RE+ V+R
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 323
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 324 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
[176][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 92.4 bits (228), Expect = 2e-17
Identities = 47/110 (42%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[177][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 92.4 bits (228), Expect = 2e-17
Identities = 45/110 (40%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + DP+A+ E+ +++ L++VL +L +RE++V+R
Sbjct: 260 QEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRL 319
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 320 RFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
[178][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 92.4 bits (228), Expect = 2e-17
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E+ + +K L +VLD+L RE+ V+R
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDG RTL+E+G + V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 322 RFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFL 371
[179][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 92.4 bits (228), Expect = 2e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A ++ + +K+ LE VLD+L RE+ V+R
Sbjct: 254 QEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAAAYELLKEQLEDVLDTLTDREENVLRL 313
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 314 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 363
[180][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 92.4 bits (228), Expect = 2e-17
Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D E + +K+ L++VLD+L +RE++V+R
Sbjct: 272 QEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRL 331
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGMDDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 332 RFGMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 381
[181][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
RepID=RPOD_LISMO
Length = 374
Score = 92.4 bits (228), Expect = 2e-17
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + +K+ LE VLD+L RE+ V+R
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 323
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 324 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
[182][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
Length = 374
Score = 92.4 bits (228), Expect = 2e-17
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + +K+ LE VLD+L RE+ V+R
Sbjct: 264 QEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRL 323
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 324 RFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
[183][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 92.0 bits (227), Expect = 3e-17
Identities = 46/110 (41%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPS--EVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET VG + + + D +A + + +K+ LE+VLD+L +RE+ V+R
Sbjct: 206 QEPVSLETPVGEESDSNLGDFIEDQDALAPADAAAFELLKEQLEEVLDTLTEREENVLRL 265
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 266 RFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 315
[184][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 92.0 bits (227), Expect = 3e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 287 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 345
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 346 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 395
[185][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 92.0 bits (227), Expect = 3e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 284 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 342
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 343 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[186][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 92.0 bits (227), Expect = 3e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 284 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 342
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 343 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[187][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 92.0 bits (227), Expect = 3e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 285 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 343
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 344 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
[188][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 92.0 bits (227), Expect = 3e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 288 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 346
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 347 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 396
[189][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 92.0 bits (227), Expect = 3e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 285 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 343
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 344 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
[190][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 92.0 bits (227), Expect = 3e-17
Identities = 47/110 (42%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ LE+VLD+L +RE++V+R
Sbjct: 265 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLDTLTEREERVLRL 324
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 325 RFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 374
[191][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 92.0 bits (227), Expect = 3e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + + E E+ + K +++DLE VL +L+ RE+ V+R
Sbjct: 284 QLPISLETPIGKE-EDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRL 342
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 343 RYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[192][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 91.7 bits (226), Expect = 4e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + ++E E + K +++DLE VL +L+ RE+ V+R
Sbjct: 329 QLPISLETPIGKE-EDSRLGDFIESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRL 387
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 388 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 437
[193][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 91.7 bits (226), Expect = 4e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ L +VLDSLN+REK+V++
Sbjct: 307 QEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKL 366
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 367 RFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
[194][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 91.7 bits (226), Expect = 4e-17
Identities = 48/110 (43%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPSEV--LADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + S + + ++E E + K +++DLE VL +L+ RE+ V+R
Sbjct: 316 QLPISLETPIGKE-EDSRLGDFIESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRL 374
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+G+DDGRM+TL+EIG++ V+RER+RQIEA A RKL++ R L++Y+
Sbjct: 375 RYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 424
[195][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 91.7 bits (226), Expect = 4e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ L +VLDSLN+REK+V++
Sbjct: 301 QEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKL 360
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 361 RFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 410
[196][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 91.7 bits (226), Expect = 4e-17
Identities = 46/108 (42%), Positives = 75/108 (69%), Gaps = 2/108 (1%)
Frame = -3
Query: 564 PKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SLET +G + + + D +A + +E Q +K++++ VL+ L +RE++V+R RF
Sbjct: 349 PVSLETPIGEEDDSHLGDFIEDKDALSPDEYANNQLLKEEIKMVLEGLTEREEKVLRLRF 408
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
G++DGR RTL+E+G+ +V+RER+RQIEA A RKLK+ R+ L+ +V
Sbjct: 409 GLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLRDFV 456
[197][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
RepID=C6VQS5_LACPJ
Length = 368
Score = 91.7 bits (226), Expect = 4e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTLTNREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[198][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
RepID=C2FI52_LACPL
Length = 368
Score = 91.7 bits (226), Expect = 4e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + + +K+ LE VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDQDATSPADAAAYELLKEQLEGVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 367
[199][TOP]
>UniRef100_A8U8N7 RNA polymerase sigma factor n=1 Tax=Carnobacterium sp. AT7
RepID=A8U8N7_9LACT
Length = 373
Score = 91.7 bits (226), Expect = 4e-17
Identities = 46/110 (41%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + E + +K+ LE VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAAYELLKEQLEDVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+++G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 372
[200][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 91.7 bits (226), Expect = 4e-17
Identities = 45/91 (49%), Positives = 65/91 (71%)
Frame = -3
Query: 519 EVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRFGMDDGRMRTLQEIGEMM 340
+ L D E E + K +K+DLE VL++LN RE+ V+R R+G+DDGR++TL+EIG +
Sbjct: 494 DTLIDDYTEHPEGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVF 553
Query: 339 SVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
SV+RER+RQIEA A RKL+ R L++Y+
Sbjct: 554 SVTRERIRQIEAKALRKLRQPSRNGILREYL 584
[201][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 91.3 bits (225), Expect = 5e-17
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A+ + + +K LE+VLDSL RE++V+R
Sbjct: 250 QEPVSLETPIGEEDDSHLGDFIEDQDAKPPADAAAFELLKGQLEEVLDSLTPREQKVLRL 309
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDG+ RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 310 RFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRHPMRSKRLKDYL 359
[202][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 91.3 bits (225), Expect = 5e-17
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + +K+ LE VLD+L RE+ V+R
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDREENVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 322 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 371
[203][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 90.9 bits (224), Expect = 7e-17
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + +K+ LE VLD+L RE+ V+R
Sbjct: 266 QEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLDTLTDREENVLRL 325
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 326 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375
[204][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 90.9 bits (224), Expect = 7e-17
Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 2/107 (1%)
Frame = -3
Query: 564 PKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG + + + + D EA +AE +I + + D+ VL +L++RE+QVIR RF
Sbjct: 211 PVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATLDEREQQVIRLRF 270
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
G+DDG+ RTL +IG++ +SRERVRQIE KL+N +RA+ L+ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
[205][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 90.9 bits (224), Expect = 7e-17
Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 2/107 (1%)
Frame = -3
Query: 564 PKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG + + + + D EA +AE +I + + D+ VL +L++RE+QVIR RF
Sbjct: 211 PVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRF 270
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
G+DDG+ RTL +IG++ +SRERVRQIE KL+N +RA+ L+ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
[206][TOP]
>UniRef100_UPI00016C0A4F RNA polymerase, sigma 70 subunit, RpoD family protein n=1
Tax=Epulopiscium sp. 'N.t. morphotype B'
RepID=UPI00016C0A4F
Length = 364
Score = 90.5 bits (223), Expect = 8e-17
Identities = 47/110 (42%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P +LET +G + + LAD +A E +K+ L +VLD+L RE++V++
Sbjct: 254 QEPVALETPIGEEEDTNLGDFLADEDAPAPAEAAAFTLLKEQLIEVLDTLTDREQKVLKL 313
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 314 RFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLRDYL 363
[207][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 90.5 bits (223), Expect = 8e-17
Identities = 43/112 (38%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Frame = -3
Query: 576 TPETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVI 403
T + P SLET +G + + + + D + E+ ++KQ ++ L++VL +L++RE+QV+
Sbjct: 476 TSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQALRLQLDEVLSTLSEREEQVL 535
Query: 402 RWRFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
R+RFG++D TL+++G+ V+RER+RQIEA A RKL++ RA +L+ ++
Sbjct: 536 RYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKLRHPHRAKYLKPFI 587
[208][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7W4_MYCVP
Length = 329
Score = 90.5 bits (223), Expect = 8e-17
Identities = 48/107 (44%), Positives = 72/107 (67%), Gaps = 2/107 (1%)
Frame = -3
Query: 564 PKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG + + + + D EA +AE +I + + D+ VL +L++RE+QVIR RF
Sbjct: 221 PVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRF 280
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
G+DDG+ RTL +IG++ +SRERVRQIE KL+N +RA+ L+ Y
Sbjct: 281 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 327
[209][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D E E+ E Q +K LE+VL +L +RE+ V+R
Sbjct: 354 QEPVSLETPIGEENDSHLGDFIEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRL 413
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DG+ RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 414 RFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFM 463
[210][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA+ E+ +++ L +VL SL RE++V+R
Sbjct: 259 QEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEASYALLREQLNEVLQSLTPREQKVLRL 318
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA RKL++ R+ L+ Y+
Sbjct: 319 RFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 368
[211][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 90.5 bits (223), Expect = 8e-17
Identities = 45/110 (40%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D A + + + +K+ +E VLD+L RE+ V+R
Sbjct: 263 QEPVSLETPIGEEDDSHLGDFIEDHAATSPADHAAYELLKEQIESVLDTLTDREENVLRL 322
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 323 RFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 372
[212][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D E + +K+ L++VLD+L +RE++V+R
Sbjct: 260 QEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRL 319
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGM+DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 320 RFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 369
[213][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D E + +K+ L++VLD+L +RE++V+R
Sbjct: 261 QEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRL 320
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGM+DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 321 RFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
[214][TOP]
>UniRef100_B0AAF1 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0AAF1_9CLOT
Length = 306
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/109 (42%), Positives = 72/109 (66%), Gaps = 2/109 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P+S+E+ +G + + +V+ D EA + EE + + +K +E VLD+L++REK VI+
Sbjct: 193 QRPQSIESTIGQEDDTELEQVIPDKEAHSPEEIVTRSLLKDQIEYVLDTLSEREKGVIKL 252
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
RFG+ DG +TL+E+G +V+RER RQIE A RKL + R+N L Y
Sbjct: 253 RFGLGDGEKKTLEEVGRAFNVTRERARQIEKKALRKLAHPSRSNKLLDY 301
[215][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D E + +K+ L++VLD+L +RE++V+R
Sbjct: 261 QEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRL 320
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGM+DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 321 RFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
[216][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D E + +K+ L++VLD+L +RE++V+R
Sbjct: 259 QEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRL 318
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGM+DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 319 RFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 368
[217][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D E + +K+ L++VLD+L +RE++V+R
Sbjct: 273 QEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRL 332
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGM+DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 333 RFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 382
[218][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 90.5 bits (223), Expect = 8e-17
Identities = 46/110 (41%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D E E+ E Q +K LE+VL +L +RE+ V+R
Sbjct: 347 QEPVSLETPIGEEDDSHLGDFIEDNEGESPIESTSDQMLKDQLEEVLGTLTEREENVLRL 406
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DG+ RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 407 RFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFM 456
[219][TOP]
>UniRef100_UPI0001B45B52 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium
intracellulare ATCC 13950 RepID=UPI0001B45B52
Length = 319
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 564 PKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG + + + D EA +AE +I + + D+ VL +L++RE QVIR RF
Sbjct: 211 PVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRF 270
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
G+DDG+ RTL +IG++ +SRERVRQIE KL+N +RA+ L+ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
[220][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 90.1 bits (222), Expect = 1e-16
Identities = 45/110 (40%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKPS--EVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D +A + + +K+ LE VLD+L +RE+ V+R
Sbjct: 257 QEPVSLETPIGEENDSNLGDFIEDQDALAPADAASYELLKEQLEHVLDTLTEREENVLRL 316
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G++ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 317 RFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 366
[221][TOP]
>UniRef100_A0QIP2 RNA polymerase sigma factor n=2 Tax=Mycobacterium avium
RepID=A0QIP2_MYCA1
Length = 319
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Frame = -3
Query: 564 PKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG + + + D EA +AE +I + + D+ VL +L++RE QVIR RF
Sbjct: 211 PVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRF 270
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
G+DDG+ RTL +IG++ +SRERVRQIE KL+N +RA+ L+ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
[222][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 90.1 bits (222), Expect = 1e-16
Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ LE+VL++L RE++V+R
Sbjct: 257 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRL 316
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 317 RFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 366
[223][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
Length = 432
Score = 90.1 bits (222), Expect = 1e-16
Identities = 45/110 (40%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +++ LE VLD+L RE+ V+R
Sbjct: 318 QEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYEMLREQLESVLDTLTDREENVLRL 377
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 378 RFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFM 427
[224][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 90.1 bits (222), Expect = 1e-16
Identities = 47/110 (42%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ LE+VL++L RE++V+R
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 322 RFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[225][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
Eklund 17B RepID=B2TMC7_CLOBB
Length = 374
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 264 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 323
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 324 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 373
[226][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 90.1 bits (222), Expect = 1e-16
Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ L +VLD+L RE++V+R
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAAAFSLLKEQLVEVLDTLTPREQKVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 322 RFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[227][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
8052 RepID=A6LRQ7_CLOB8
Length = 376
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 266 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 325
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 326 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 375
[228][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 244 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 303
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 304 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 353
[229][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 258 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 318 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367
[230][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ LE+VL++L RE +V+R
Sbjct: 223 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKEQLEEVLETLTAREMKVLRL 282
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ YV
Sbjct: 283 RFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYV 332
[231][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 251 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 310
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 311 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360
[232][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 258 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 318 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367
[233][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
RepID=B2V2K8_CLOBA
Length = 374
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 264 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 323
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 324 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 373
[234][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
Length = 432
Score = 90.1 bits (222), Expect = 1e-16
Identities = 45/110 (40%), Positives = 72/110 (65%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D EA + + + +++ LE VLD+L RE+ V+R
Sbjct: 318 QEPVSLETPIGEEDDSHLGDFIEDNEAVSPADSAAYEMLREQLESVLDTLTDREENVLRL 377
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G + V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 378 RFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFM 427
[235][TOP]
>UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
20162 RepID=C2APA0_TSUPA
Length = 330
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = -3
Query: 564 PKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG + + + + D EA +AE +I M D+ VL +L++RE+QVIR R+
Sbjct: 222 PVSLDMPVGSDEEAPLGDFIEDAEAASAESAVISTLMHSDVRSVLATLDEREQQVIRLRY 281
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
G+DDG+ RTL +IG++ +SRERVRQIE KL+N +RA+ L+ Y
Sbjct: 282 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGERADRLRAY 328
[236][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CM66_9FIRM
Length = 372
Score = 90.1 bits (222), Expect = 1e-16
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D E + +K+ L++VLD+L +RE++V+R
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFGM+DGR RTL+E+G V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 322 RFGMNDGRARTLEEVGREFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 371
[237][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
RepID=B1QWY9_CLOBU
Length = 369
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 259 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 318
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 319 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 368
[238][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 251 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 310
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 311 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360
[239][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 90.1 bits (222), Expect = 1e-16
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D EA E +K+ L VLD+L RE++V+R
Sbjct: 258 QEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ +V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 318 RFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 367
[240][TOP]
>UniRef100_UPI00017F5605 RNA polymerase sigma factor (sigma-43) n=1 Tax=Clostridium
difficile QCD-23m63 RepID=UPI00017F5605
Length = 388
Score = 89.7 bits (221), Expect = 1e-16
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ +E VL SLN RE++V++
Sbjct: 278 QDPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAYSLLKEQIEDVLGSLNDREQKVLKL 337
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 338 RFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 387
[241][TOP]
>UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA
Length = 372
Score = 89.7 bits (221), Expect = 1e-16
Identities = 44/110 (40%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D + + E+ + ++ L +VLD+L RE+ V+R
Sbjct: 262 QEPVSLETPIGEEDDSHLGDFIEDKDTTSPEQHAASEMLRDQLAEVLDTLTDREENVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDG RTL+E+G + V+RER+RQIEA A RKL++ R+N L+ ++
Sbjct: 322 RFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFL 371
[242][TOP]
>UniRef100_Q18BX5 RNA polymerase sigma factor n=1 Tax=Clostridium difficile 630
RepID=Q18BX5_CLOD6
Length = 390
Score = 89.7 bits (221), Expect = 1e-16
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ +E VL SLN RE++V++
Sbjct: 280 QDPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAYSLLKEQIEDVLGSLNDREQKVLKL 339
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 340 RFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 389
[243][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 89.7 bits (221), Expect = 1e-16
Identities = 47/110 (42%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ L +VLD+L RE++V+R
Sbjct: 262 QEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFSLLKEQLIEVLDTLTPREQKVLRL 321
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 322 RFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
[244][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCQ2_MYCGI
Length = 329
Score = 89.7 bits (221), Expect = 1e-16
Identities = 48/107 (44%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
Frame = -3
Query: 564 PKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRWRF 391
P SL+ VG + + + + D EA +AE +I + + D+ VL +L++RE+QVIR RF
Sbjct: 221 PVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRF 280
Query: 390 GMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQY 250
G+DDG+ RTL +IG++ +SRERVRQIE KL+N RA+ L+ Y
Sbjct: 281 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSY 327
[245][TOP]
>UniRef100_C9XSQ7 RNA polymerase sigma factor (Sigma-43) n=2 Tax=Clostridium
difficile RepID=C9XSQ7_CLODI
Length = 388
Score = 89.7 bits (221), Expect = 1e-16
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ +E VL SLN RE++V++
Sbjct: 278 QDPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAYSLLKEQIEDVLGSLNDREQKVLKL 337
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 338 RFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 387
[246][TOP]
>UniRef100_B0ABJ4 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0ABJ4_9CLOT
Length = 385
Score = 89.7 bits (221), Expect = 1e-16
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K +E+VL SLN+RE++V++
Sbjct: 275 QDPVSLETPIGEEEDSHLGDFIPDEDALAPAEAAAYSLLKDQIEEVLGSLNEREQKVLKL 334
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG++DGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ Y+
Sbjct: 335 RFGLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYL 384
[247][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 89.7 bits (221), Expect = 1e-16
Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGINLKP--SEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + D +A E +K+ LE+VL++L RE++V+R
Sbjct: 258 QEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETLTPREEKVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDGR RTL+E+G+ V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 367
[248][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M18 RepID=Q8P1I9_STRP8
Length = 369
Score = 89.4 bits (220), Expect = 2e-16
Identities = 43/110 (39%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D E + + +++ L++VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDG+MRTL+++G++ +V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[249][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M3 RepID=Q8K811_STRP3
Length = 369
Score = 89.4 bits (220), Expect = 2e-16
Identities = 43/110 (39%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D E + + +++ L++VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDG+MRTL+++G++ +V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFI 367
[250][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
18311 RepID=Q5M3E3_STRT2
Length = 369
Score = 89.4 bits (220), Expect = 2e-16
Identities = 43/110 (39%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = -3
Query: 570 ETPKSLETKVGI--NLKPSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNQREKQVIRW 397
+ P SLET +G + + + D E + + +++ L++VLD+L RE+ V+R
Sbjct: 258 QEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRL 317
Query: 396 RFGMDDGRMRTLQEIGEMMSVSRERVRQIEACAFRKLKNKKRANHLQQYV 247
RFG+DDG+MRTL+++G++ +V+RER+RQIEA A RKL++ R+ L+ ++
Sbjct: 318 RFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLKDFI 367