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[1][TOP]
>UniRef100_B8R4A7 DNA-directed RNA polymerase n=1 Tax=Trifolium subterraneum
RepID=B8R4A7_TRISU
Length = 682
Score = 335 bits (860), Expect = 1e-90
Identities = 159/171 (92%), Positives = 164/171 (95%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKM KN
Sbjct: 512 LMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMRKN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NSKYMKKKEPFFCNSYDAIGAYRQK+INFDSPFWLRWPID+ IMSSREVP+E+HYES GT
Sbjct: 572 NSKYMKKKEPFFCNSYDAIGAYRQKRINFDSPFWLRWPIDECIMSSREVPVEIHYESLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
YYEIYEHYLVIR IKKEIRCIYIRTTVGHISFYREIEEAIQGFSR DSY I
Sbjct: 632 YYEIYEHYLVIRGIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRADSYAI 682
[2][TOP]
>UniRef100_UPI0001596BBD RNA polymerase beta n=1 Tax=Medicago truncatula RepID=UPI0001596BBD
Length = 668
Score = 325 bits (832), Expect = 2e-87
Identities = 158/171 (92%), Positives = 161/171 (94%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNPFNCRNSKNEK+S N
Sbjct: 498 LMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSKNEKISNN 557
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NSKYMKKKEPFFCNSYDAIGAYRQK+IN DSPFWLRW IDQ IMSSREVPIEVHYESFGT
Sbjct: 558 NSKYMKKKEPFFCNSYDAIGAYRQKRINLDSPFWLRWRIDQCIMSSREVPIEVHYESFGT 617
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
YYEIY HYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR SYGI
Sbjct: 618 YYEIYGHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRAYSYGI 668
[3][TOP]
>UniRef100_B5LMM5 DNA-directed RNA polymerase n=1 Tax=Cicer arietinum
RepID=B5LMM5_CICAR
Length = 684
Score = 316 bits (809), Expect = 9e-85
Identities = 153/171 (89%), Positives = 159/171 (92%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNPFNCRNS+NEK+S N
Sbjct: 514 LMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPFNCRNSQNEKISDN 573
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY+KK EPFFCNSYDAIGAYRQK+INFDSPFWLRW IDQ I+SSREVPIEVHYES GT
Sbjct: 574 NYKYIKKNEPFFCNSYDAIGAYRQKRINFDSPFWLRWRIDQCILSSREVPIEVHYESLGT 633
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
YYEIY HYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR SYGI
Sbjct: 634 YYEIYGHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRAYSYGI 684
[4][TOP]
>UniRef100_Q8HVY4 DNA-directed RNA polymerase subunit beta' n=1 Tax=Glycine max
RepID=RPOC1_SOYBN
Length = 687
Score = 289 bits (739), Expect = 1e-76
Identities = 141/174 (81%), Positives = 152/174 (87%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNC---RNSKNEKM 171
LMFS TNLLSPA+GDPISVPTQDMLIGLY+LTSGNRRGI + RYNP NC RN KNE++
Sbjct: 514 LMFSHTNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGIYSNRYNPRNCGNFRNLKNERI 573
Query: 172 SKNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
NN KY KKKEPFFCNSYDAIGAY+QK+INFDSP WLRW +DQRI+SSREVPIEVHYES
Sbjct: 574 RDNNYKYTKKKEPFFCNSYDAIGAYQQKRINFDSPLWLRWRLDQRIISSREVPIEVHYES 633
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTY+EIYEHYLV+RS KKEIR IYIRT VGHISFYREIEEAIQGF R SY I
Sbjct: 634 LGTYHEIYEHYLVVRSTKKEIRSIYIRTNVGHISFYREIEEAIQGFCRAYSYDI 687
[5][TOP]
>UniRef100_A4GGA6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Phaseolus vulgaris
RepID=RPOC1_PHAVU
Length = 684
Score = 284 bits (726), Expect = 4e-75
Identities = 135/171 (78%), Positives = 149/171 (87%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+ DPISVPTQDMLIGLY+LTSGNRRGI + RYNP NCRN KNE++ N
Sbjct: 514 LMFSHTNLLSPAIADPISVPTQDMLIGLYILTSGNRRGIYSNRYNPRNCRNLKNERIPNN 573
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY KKKEPFFCNSYDAIGAY+QK+I FDSP WLRW +D RI+SSREVPIEVHYES GT
Sbjct: 574 NYKYTKKKEPFFCNSYDAIGAYQQKRITFDSPLWLRWRLDLRIISSREVPIEVHYESLGT 633
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
Y+EIY HYLV+RSIKK++R IYIRT VGHISFYREIEEA+QGF R SY I
Sbjct: 634 YHEIYGHYLVVRSIKKQMRSIYIRTNVGHISFYREIEEAVQGFCRAYSYDI 684
[6][TOP]
>UniRef100_Q9BBS8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lotus japonicus
RepID=RPOC1_LOTJA
Length = 682
Score = 283 bits (723), Expect = 8e-75
Identities = 139/171 (81%), Positives = 152/171 (88%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPI+VPTQDMLIGLY+LTSGNRRGI A RYN N +NSKNEK+
Sbjct: 514 LMFSHTNLLSPAIGDPIAVPTQDMLIGLYILTSGNRRGICANRYNRSNWKNSKNEKI--R 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+ KYMKKKEPFF NSYDAIGA+RQKKINFDSPFWLRW +D+ IMSSRE PIEVHYES GT
Sbjct: 572 DKKYMKKKEPFFSNSYDAIGAFRQKKINFDSPFWLRWRLDKCIMSSREAPIEVHYESLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
Y++IYEHYLVIRSIKK+I CIYIRTT+GHISFYREIEEAIQGF R SYGI
Sbjct: 632 YHDIYEHYLVIRSIKKQICCIYIRTTIGHISFYREIEEAIQGFCRGYSYGI 682
[7][TOP]
>UniRef100_Q49L07 DNA-directed RNA polymerase subunit beta' n=1 Tax=Eucalyptus globulus
subsp. globulus RepID=RPOC1_EUCGG
Length = 682
Score = 281 bits (718), Expect = 3e-74
Identities = 133/170 (78%), Positives = 148/170 (87%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI RYNP+N RN +NE+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICTNRYNPWNRRNYQNERTYDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY KKKEPFFCNSYDAIGAYRQK+IN DSP WLRW +DQRI++SREVPIE+HYES GT
Sbjct: 572 NYKYRKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREVPIEIHYESLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY HYL++RS+KKEI CIYIRTTVGHIS +REIEEAIQGF R S+G
Sbjct: 632 YHEIYGHYLIVRSVKKEIICIYIRTTVGHISLFREIEEAIQGFCRACSFG 681
[8][TOP]
>UniRef100_A4QL10 DNA-directed RNA polymerase subunit beta' n=1 Tax=Draba nemorosa
RepID=RPOC1_DRANE
Length = 680
Score = 275 bits (704), Expect = 1e-72
Identities = 132/169 (78%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N KNEK+ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNDKNEKLYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KYMK EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 NYKYMK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTT GHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFCIYIRTTAGHISFYREIEEAIQGFSQACSY 678
[9][TOP]
>UniRef100_Q09G55 DNA-directed RNA polymerase subunit beta' n=1 Tax=Platanus
occidentalis RepID=RPOC1_PLAOC
Length = 682
Score = 275 bits (703), Expect = 2e-72
Identities = 129/170 (75%), Positives = 148/170 (87%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLT GNRRGI A RYNP N RN +NE++ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPRNRRNYQNERIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K+KEP+FC+SYDA+GAYRQK+IN DSP WLRW +DQR+++SREVPIEV YES GT
Sbjct: 572 NYRYTKEKEPYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIASREVPIEVQYESLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY HYL++RS+KKEI CIYIRTTVGHISFYREIEEAIQGF R SYG
Sbjct: 632 YHEIYGHYLIVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRACSYG 681
[10][TOP]
>UniRef100_A4QJA6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Aethionema
cordifolium RepID=RPOC1_AETCO
Length = 680
Score = 274 bits (701), Expect = 3e-72
Identities = 132/169 (78%), Positives = 147/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KYMK EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+ +SREVPIEVHYESFGT
Sbjct: 572 NYKYMK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVSASREVPIEVHYESFGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RSIKKE C+YIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSIKKETFCVYIRTTVGHISFYREIEEAIQGFSQACSY 678
[11][TOP]
>UniRef100_Q68S15 DNA-directed RNA polymerase subunit beta' n=1 Tax=Panax ginseng
RepID=RPOC1_PANGI
Length = 682
Score = 274 bits (700), Expect = 4e-72
Identities = 131/170 (77%), Positives = 145/170 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI RYNP N RN +NE++ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNERIYDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY KKKEPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR++S++E P+EVHYES GT
Sbjct: 572 NYKYTKKKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAPLEVHYESLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
YYEIY YL++RSIKKEI IYIRTTVGHIS YREIEEAIQGF + SYG
Sbjct: 632 YYEIYGQYLIVRSIKKEILYIYIRTTVGHISLYREIEEAIQGFCQACSYG 681
[12][TOP]
>UniRef100_A5C9K2 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A5C9K2_VITVI
Length = 188
Score = 273 bits (698), Expect = 7e-72
Identities = 129/169 (76%), Positives = 145/169 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP N RN +NE++ N
Sbjct: 18 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERIDDN 77
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K+KEPFFCNSYDAIGAYR K+IN SP WLRW +DQR+++S+E PIEVHYES GT
Sbjct: 78 NYRYTKEKEPFFCNSYDAIGAYRHKRINLYSPLWLRWQLDQRLIASKEAPIEVHYESLGT 137
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKEI CIYIRTTVGHIS YREIEEAIQGF R SY
Sbjct: 138 YHEIYGHYLIVRSVKKEIPCIYIRTTVGHISLYREIEEAIQGFCRACSY 186
[13][TOP]
>UniRef100_Q0ZJ29 DNA-directed RNA polymerase subunit beta' n=1 Tax=Vitis vinifera
RepID=RPOC1_VITVI
Length = 682
Score = 273 bits (698), Expect = 7e-72
Identities = 129/169 (76%), Positives = 145/169 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP N RN +NE++ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K+KEPFFCNSYDAIGAYR K+IN SP WLRW +DQR+++S+E PIEVHYES GT
Sbjct: 572 NYRYTKEKEPFFCNSYDAIGAYRHKRINLYSPLWLRWQLDQRLIASKEAPIEVHYESLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKEI CIYIRTTVGHIS YREIEEAIQGF R SY
Sbjct: 632 YHEIYGHYLIVRSVKKEIPCIYIRTTVGHISLYREIEEAIQGFCRACSY 680
[14][TOP]
>UniRef100_A4QJS4 DNA-directed RNA polymerase subunit beta' n=1 Tax=Olimarabidopsis
pumila RepID=RPOC1_OLIPU
Length = 680
Score = 273 bits (698), Expect = 7e-72
Identities = 131/169 (77%), Positives = 147/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++S+
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERISET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 NYKYTK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFCIYIRTTVGHISFYREIEEAIQGFSQACSY 678
[15][TOP]
>UniRef100_A4QLI5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lobularia maritima
RepID=RPOC1_LOBMA
Length = 680
Score = 273 bits (698), Expect = 7e-72
Identities = 131/169 (77%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N KNE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYKNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KYMK EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 NYKYMK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTT GHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFCIYIRTTAGHISFYREIEEAIQGFSQACSY 678
[16][TOP]
>UniRef100_Q4FFY0 DNA-directed RNA polymerase (Fragment) n=1 Tax=Typha latifolia
RepID=Q4FFY0_TYPLA
Length = 684
Score = 272 bits (695), Expect = 1e-71
Identities = 126/169 (74%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GNRRGI A RYNP+NC N +N+ + N
Sbjct: 516 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCGNYQNKTVDNN 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K+KEP+FC+SYDA+GAYRQK+I+ DSP WLRW +DQR++ SREVPIEV YES GT
Sbjct: 576 NYRYTKEKEPYFCSSYDALGAYRQKRISLDSPLWLRWKLDQRVIGSREVPIEVQYESLGT 635
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++ S+KKEIRCIYIRTT+GHISFYREIEEAIQGF R SY
Sbjct: 636 YHEIYGHYLMVGSVKKEIRCIYIRTTLGHISFYREIEEAIQGFCRAYSY 684
[17][TOP]
>UniRef100_A9Y369 DNA-directed RNA polymerase n=1 Tax=Papaver somniferum
RepID=A9Y369_PAPSO
Length = 682
Score = 271 bits (694), Expect = 2e-71
Identities = 127/169 (75%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPIS+PTQDML+GLYVLT GNRRGI A RYNP N N +NEK+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNRRGICANRYNPCNHLNYQNEKIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K+KEP+FC+SYDA+GAYRQK+IN DSP WLRW +DQR++ SREVPIEV Y+SFGT
Sbjct: 572 NYKYTKEKEPYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIGSREVPIEVQYDSFGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 632 YHEIYGHYLIVRSVKKETLCIYIRTTVGHISFYREIEEAIQGFSQACSY 680
[18][TOP]
>UniRef100_A9Y368 DNA-directed RNA polymerase n=1 Tax=Papaver somniferum
RepID=A9Y368_PAPSO
Length = 682
Score = 271 bits (694), Expect = 2e-71
Identities = 127/169 (75%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPIS+PTQDML+GLYVLT GNRRGI A RYNP N N +NEK+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISIPTQDMLMGLYVLTIGNRRGICANRYNPCNHLNYQNEKIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K+KEP+FC+SYDA+GAYRQK+IN DSP WLRW +DQR++ SREVPIEV Y+SFGT
Sbjct: 572 NYKYTKEKEPYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIGSREVPIEVQYDSFGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 632 YHEIYGHYLIVRSVKKETLCIYIRTTVGHISFYREIEEAIQGFSQACSY 680
[19][TOP]
>UniRef100_Q09X26 DNA-directed RNA polymerase subunit beta' n=1 Tax=Morus indica
RepID=RPOC1_MORIN
Length = 684
Score = 271 bits (694), Expect = 2e-71
Identities = 131/172 (76%), Positives = 147/172 (85%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP N RN +NE++ N
Sbjct: 512 LMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNYRNYQNERIDDN 571
Query: 181 NSKYMK--KKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
KY K +KEPFFCNSYDAIGAYRQK+I+ DSP WLRW +DQR+++SRE PIEVHY+S
Sbjct: 572 KYKYTKTQEKEPFFCNSYDAIGAYRQKRIHLDSPLWLRWRLDQRVITSREAPIEVHYQSL 631
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
GTY+EIY H L++RSIKKEI CIY+RTTVGHIS YREIEEAIQGF R SYG
Sbjct: 632 GTYHEIYGHLLIVRSIKKEILCIYLRTTVGHISLYREIEEAIQGFFRACSYG 683
[20][TOP]
>UniRef100_P56763 DNA-directed RNA polymerase subunit beta' n=1 Tax=Arabidopsis
thaliana RepID=RPOC1_ARATH
Length = 680
Score = 271 bits (693), Expect = 2e-71
Identities = 131/169 (77%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDAIGAYRQKKIN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 NYKYTK--EPFFCNSYDAIGAYRQKKINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKENFCIYIRTTVGHISFYREIEEAIQGFSQACSY 678
[21][TOP]
>UniRef100_A4QK09 DNA-directed RNA polymerase subunit beta' n=1 Tax=Arabis hirsuta
RepID=RPOC1_ARAHI
Length = 680
Score = 271 bits (693), Expect = 2e-71
Identities = 131/169 (77%), Positives = 147/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +NS+NE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNSQNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KYMK EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 NYKYMK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE IYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFFIYIRTTVGHISFYREIEEAIQGFSQACSY 678
[22][TOP]
>UniRef100_A6MMB3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chloranthus
spicatus RepID=RPOC1_CHLSC
Length = 688
Score = 271 bits (692), Expect = 3e-71
Identities = 129/172 (75%), Positives = 147/172 (85%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNS--KNEKMS 174
LMFS NLLSP +GDPISVPTQDMLIGLYVLT GNRRGI A RYNP NCRN +NE +
Sbjct: 516 LMFSHMNLLSPTIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPCNCRNDNDQNETVD 575
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
NN KY K+KEP+FC+SYDA+GAYRQK+I+ DSP WLRW +DQR+++SREVPIEV YES
Sbjct: 576 DNNYKYTKEKEPYFCSSYDALGAYRQKRIHLDSPLWLRWRLDQRVIASREVPIEVQYESS 635
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
GT++EIY HYL++RS+KKEI CIYIRTTVGHISFYREIEEAIQGF R SYG
Sbjct: 636 GTHHEIYGHYLIVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYSYG 687
[23][TOP]
>UniRef100_A4QK96 DNA-directed RNA polymerase subunit beta' n=1 Tax=Barbarea verna
RepID=RPOC1_BARVE
Length = 680
Score = 271 bits (692), Expect = 3e-71
Identities = 130/169 (76%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNQKNYQNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 NYKYTK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFCIYIRTTVGHISFYREIEEAIQGFSQACSY 678
[24][TOP]
>UniRef100_A4QL97 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lepidium virginicum
RepID=RPOC1_LEPVR
Length = 680
Score = 270 bits (690), Expect = 6e-71
Identities = 129/169 (76%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGISANRYNPCNRKNYQNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+ KY K EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 HYKYTK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFCIYIRTTVGHISFYREIEEAIQGFSQACSY 678
[25][TOP]
>UniRef100_A4QKS2 DNA-directed RNA polymerase subunit beta' n=1 Tax=Crucihimalaya
wallichii RepID=RPOC1_CRUWA
Length = 680
Score = 270 bits (690), Expect = 6e-71
Identities = 130/169 (76%), Positives = 145/169 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N KNE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNPKNYKNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDA GAYRQK+IN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 NYKYTK--EPFFCNSYDANGAYRQKRINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETYCIYIRTTVGHISFYREIEEAIQGFSQACSY 678
[26][TOP]
>UniRef100_B2XWP0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Fagopyrum
esculentum subsp. ancestrale RepID=RPOC1_FAGEA
Length = 676
Score = 270 bits (689), Expect = 7e-71
Identities = 131/170 (77%), Positives = 147/170 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP++ +N KNEK + +
Sbjct: 508 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWSRKNYKNEKWNDH 567
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KYMK EPFFCNSYDAIGAYRQK+IN DSP WLRW +D R+++SRE PIEVHYES GT
Sbjct: 568 NYKYMK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDHRVVASREAPIEVHYESLGT 625
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY +YL++RS+KKEI IYIRTTVGHISFYREIEEAIQGF R SYG
Sbjct: 626 YHEIYGNYLIVRSVKKEIIFIYIRTTVGHISFYREIEEAIQGFYRACSYG 675
[27][TOP]
>UniRef100_C0LE65 DNA-directed RNA polymerase n=1 Tax=Jatropha curcas
RepID=C0LE65_9ROSI
Length = 680
Score = 269 bits (688), Expect = 9e-71
Identities = 131/171 (76%), Positives = 147/171 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP N RNS+NE++ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNSQNERIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N+KY K EPFF NSYDAIGA+R+K+IN DSP WLRW +DQR + SRE P+EVHYES GT
Sbjct: 572 NNKYTK--EPFFSNSYDAIGAFRRKRINLDSPLWLRWQLDQRAIVSREAPLEVHYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
Y+EIYEHYL++R+IKKEI CIYIRTTVGHISFYREIEEAIQGF + S GI
Sbjct: 630 YHEIYEHYLIVRNIKKEIICIYIRTTVGHISFYREIEEAIQGFCQACSDGI 680
[28][TOP]
>UniRef100_Q4VZP2 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cucumis sativus
RepID=RPOC1_CUCSA
Length = 680
Score = 269 bits (688), Expect = 9e-71
Identities = 131/170 (77%), Positives = 145/170 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLS A+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP N +N KNEK+ N
Sbjct: 512 LMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 572 NYKYTK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
++EIY +YL+++SIKKEI CIYIRTTVGHIS YREIEEAIQGF R SYG
Sbjct: 630 HHEIYGYYLIVKSIKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYG 679
[29][TOP]
>UniRef100_B1A926 DNA-directed RNA polymerase subunit beta' n=1 Tax=Carica papaya
RepID=RPOC1_CARPA
Length = 680
Score = 269 bits (688), Expect = 9e-71
Identities = 129/169 (76%), Positives = 144/169 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLTSG RRGI A RYNP N +N +NE++ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGTRRGICANRYNPCNRKNYQNERIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 572 NYKYTK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREAPIEVHYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKEI CIYIRTTVGHIS YREIEEAIQGF R SY
Sbjct: 630 YHEIYGHYLIVRSVKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSY 678
[30][TOP]
>UniRef100_Q4FFX9 DNA-directed RNA polymerase (Fragment) n=1 Tax=Yucca schidigera
RepID=Q4FFX9_9ASPA
Length = 693
Score = 269 bits (687), Expect = 1e-70
Identities = 124/165 (75%), Positives = 142/165 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GNRRGI A RYNP+NC N +N+ + N
Sbjct: 526 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPYNCGNYQNKTVDNN 585
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
KY KKKEP+FC+SYD +GAYRQK+IN DSPFWLRW +DQR++ SREVPIEV YES GT
Sbjct: 586 YYKYTKKKEPYFCSSYDVLGAYRQKRINLDSPFWLRWRLDQRVIGSREVPIEVQYESLGT 645
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
Y+EIY HYL+ S+KKEIRCIYIRTT+GH+SFYREIEEA+QGF R
Sbjct: 646 YHEIYGHYLIGGSVKKEIRCIYIRTTIGHVSFYREIEEAVQGFCR 690
[31][TOP]
>UniRef100_A4QKI3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Capsella
bursa-pastoris RepID=RPOC1_CAPBU
Length = 680
Score = 269 bits (687), Expect = 1e-70
Identities = 129/169 (76%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDAIGAYRQK+I+ DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 572 NYKYTK--EPFFCNSYDAIGAYRQKRIDLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFCIYIRTTVGHISFYREIEEAIQGFSQACSY 678
[32][TOP]
>UniRef100_A4QLS4 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nasturtium
officinale RepID=RPOC1_NASOF
Length = 680
Score = 268 bits (686), Expect = 2e-70
Identities = 127/169 (75%), Positives = 146/169 (86%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++S+EVPIEVHYESFG
Sbjct: 572 NYKYTK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASKEVPIEVHYESFGN 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE CIYIRTTVGHISFYRE+EEA+QGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFCIYIRTTVGHISFYRELEEAVQGFSQACSY 678
[33][TOP]
>UniRef100_A4QJJ0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Aethionema
grandiflorum RepID=RPOC1_AETGR
Length = 680
Score = 268 bits (686), Expect = 2e-70
Identities = 129/169 (76%), Positives = 145/169 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTS RRGI A RYNP N +N +NE++ +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSATRRGICANRYNPCNRKNYQNERIYET 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KYMK EPFFCNSYDAIGAY QK+IN DSP WLRW +DQR+ +SREVPIEVHYESFGT
Sbjct: 572 NYKYMK--EPFFCNSYDAIGAYWQKRINLDSPLWLRWQLDQRVSASREVPIEVHYESFGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE C+YIRTTVGHISFYREIEEAIQGFS+ SY
Sbjct: 630 YHEIYAHYLIVRSVKKETFCVYIRTTVGHISFYREIEEAIQGFSQACSY 678
[34][TOP]
>UniRef100_A0A326 DNA-directed RNA polymerase subunit beta' n=1 Tax=Coffea arabica
RepID=RPOC1_COFAR
Length = 683
Score = 268 bits (685), Expect = 2e-70
Identities = 128/170 (75%), Positives = 144/170 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLTSGNRRGI RYNP+N RN + +K N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICVNRYNPWNRRNYQTKKSDNN 574
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K EPFFCNSYDAIGAYRQK+IN DSP WLRWP+DQR+++SRE+PIEVHYES G
Sbjct: 575 NYEYTK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWPLDQRVIASREIPIEVHYESLGI 632
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
YYEIY HYL+++SIKKEI +YIRTTVGHIS YREIEEAIQGFS SYG
Sbjct: 633 YYEIYGHYLIVKSIKKEILFLYIRTTVGHISLYREIEEAIQGFSHACSYG 682
[35][TOP]
>UniRef100_A6MM27 DNA-directed RNA polymerase subunit beta' n=1 Tax=Buxus microphylla
RepID=RPOC1_BUXMI
Length = 685
Score = 267 bits (682), Expect = 5e-70
Identities = 128/173 (73%), Positives = 148/173 (85%), Gaps = 3/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNS---KNEKM 171
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP N N +NE++
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRGNRVNFQNERI 571
Query: 172 SKNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
NN KY K+K+P+FC+SYDAIGAYRQK+IN DSP WLRW +DQRI++SREVPIEVHYES
Sbjct: 572 DDNNYKYTKEKDPYFCSSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREVPIEVHYES 631
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
GTY+EIY +YL+++S+KKEI CIYIRTTVGHI FYR+IEEA+QGF R SYG
Sbjct: 632 LGTYHEIYVNYLIVKSVKKEILCIYIRTTVGHIYFYRKIEEAVQGFFRACSYG 684
[36][TOP]
>UniRef100_P46819 DNA-directed RNA polymerase subunit beta' n=1 Tax=Sinapis alba
RepID=RPOC1_SINAL
Length = 688
Score = 266 bits (679), Expect = 1e-69
Identities = 128/169 (75%), Positives = 145/169 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++ +
Sbjct: 520 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYET 579
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KYMK EPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR+++S+EVPIEVHYESFG
Sbjct: 580 NYKYMK--EPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASKEVPIEVHYESFGN 637
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKE IYIRTTVGHIS YREIEEAIQGFS+ SY
Sbjct: 638 YHEIYAHYLIVRSVKKETLYIYIRTTVGHISLYREIEEAIQGFSQACSY 686
[37][TOP]
>UniRef100_A6MMT5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Illicium oligandrum
RepID=RPOC1_ILLOL
Length = 689
Score = 266 bits (679), Expect = 1e-69
Identities = 126/170 (74%), Positives = 143/170 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GN RGI A RYNP N RN +NE + N
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNHRGICANRYNPCNYRNYQNETVDDN 578
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K+KEP FC+SYDA+GAYRQK+IN SP WLRW +DQR+++SREVPIEV YES GT
Sbjct: 579 NYQYTKEKEPHFCSSYDALGAYRQKRINLYSPLWLRWRLDQRVIASREVPIEVQYESLGT 638
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY HY ++RSIKKEI CIYIRTT+GHISFYREIEEA+QGF R SYG
Sbjct: 639 YHEIYGHYQIVRSIKKEILCIYIRTTIGHISFYREIEEAVQGFCRAYSYG 688
[38][TOP]
>UniRef100_Q589B9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Silene latifolia
RepID=RPOC1_SILLA
Length = 687
Score = 264 bits (674), Expect = 4e-69
Identities = 127/170 (74%), Positives = 144/170 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLY+LTSG RRGI A RYNP+N +N +NE++
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGTRRGICANRYNPWNRKNDQNERIDDK 574
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KYM+ EPFFCNSYDAIGAY QK+IN DSP WLRW +DQRI++SRE P+EVHYES GT
Sbjct: 575 NYKYME--EPFFCNSYDAIGAYCQKRINLDSPLWLRWRLDQRIIASREAPVEVHYESLGT 632
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY HYL+IR+IKKEI +YIRTTVGHI YREIEEAIQGFSR SYG
Sbjct: 633 YHEIYAHYLIIRNIKKEIIFVYIRTTVGHIYLYREIEEAIQGFSRACSYG 682
[39][TOP]
>UniRef100_Q8S8Y0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Atropa belladonna
RepID=RPOC1_ATRBE
Length = 681
Score = 264 bits (674), Expect = 4e-69
Identities = 129/170 (75%), Positives = 144/170 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI RYNP N RN +N+K S +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNQKRS-D 570
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NS Y KEPFF NSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 571 NSYYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGT 630
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
+YEIY HYL++RS+KK+I IYIRTTVGHI+ YREIEEAIQGFSR SYG
Sbjct: 631 FYEIYGHYLIVRSLKKQILFIYIRTTVGHIALYREIEEAIQGFSRAYSYG 680
[40][TOP]
>UniRef100_Q0G9M8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Liriodendron
tulipifera RepID=RPOC1_LIRTU
Length = 681
Score = 263 bits (673), Expect = 5e-69
Identities = 126/169 (74%), Positives = 144/169 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLY+LT GNRRGI + RYNP N RN +NE + N
Sbjct: 513 LMFSHMNLLSPAIGDPISVPTQDMLIGLYILTIGNRRGICSNRYNPCNRRNYQNETVDYN 572
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
KY K+KEP+FC+SYDA+GAYRQK+IN DSP WLRW +DQR+++SREVPIEV YES GT
Sbjct: 573 --KYTKEKEPYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIASREVPIEVQYESLGT 630
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KKEI CIYIRTTVGHISFYREIEEAIQGF R Y
Sbjct: 631 YHEIYGHYLIVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYLY 679
[41][TOP]
>UniRef100_B1NWE1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Manihot esculenta
RepID=RPOC1_MANES
Length = 680
Score = 263 bits (671), Expect = 9e-69
Identities = 128/171 (74%), Positives = 144/171 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP N RN +N+++ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDGN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EP F NSYDA+GAYRQK+I+ DSP WLRW +DQR ++SRE PIEVHYES GT
Sbjct: 572 NDKYTK--EPLFSNSYDALGAYRQKRIHLDSPLWLRWQLDQRAITSREAPIEVHYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
Y+EIYEHYL++R+IKKEI CIYIRTTVGHIS YREIEEAIQGF + S GI
Sbjct: 630 YHEIYEHYLIVRNIKKEILCIYIRTTVGHISLYREIEEAIQGFCQACSDGI 680
[42][TOP]
>UniRef100_Q09FX0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nandina domestica
RepID=RPOC1_NANDO
Length = 680
Score = 261 bits (668), Expect = 2e-68
Identities = 126/170 (74%), Positives = 144/170 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLT+GN RGI A RYNP N RN +NEK+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTTGNHRGICANRYNPSNHRNYQNEKIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EP+FC+SYDA+GAYRQK+I DSP WLRW +DQR+++SREVPIEV YES GT
Sbjct: 572 NYKYTK--EPYFCSSYDALGAYRQKRIYLDSPLWLRWRLDQRVIASREVPIEVQYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY HYL++R++KKEI CI IRTTVGHISFYREIEEAIQGF R SYG
Sbjct: 630 YHEIYGHYLIVRNVKKEILCIDIRTTVGHISFYREIEEAIQGFCRACSYG 679
[43][TOP]
>UniRef100_Q2L8Z4 DNA-directed RNA polymerase subunit beta' n=1 Tax=Gossypium hirsutum
RepID=RPOC1_GOSHI
Length = 685
Score = 261 bits (668), Expect = 2e-68
Identities = 125/169 (73%), Positives = 144/169 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI A RYNP+N ++ +NE++ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPWNRKSYQNERIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N Y +EPFFCNSYDAIGAYRQK+IN DSP WLRW ++Q +++SRE PIEVHYES GT
Sbjct: 572 N--YKSTREPFFCNSYDAIGAYRQKRINLDSPLWLRWQLEQCVIASREAPIEVHYESSGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++RS+KK+I CIYIRTTVGHIS YREIEEAIQGF R SY
Sbjct: 630 YHEIYGHYLIVRSLKKKILCIYIRTTVGHISLYREIEEAIQGFFRAYSY 678
[44][TOP]
>UniRef100_Q0G9X1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Daucus carota
RepID=RPOC1_DAUCA
Length = 677
Score = 261 bits (668), Expect = 2e-68
Identities = 125/163 (76%), Positives = 142/163 (87%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGNRRGI RYNP N RN +N+++ +N
Sbjct: 512 LMFSHINLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPSNHRN-QNKRIYEN 570
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K+KEPFFCNSYDAIGAYRQK+IN DSP WLRW +DQR++++RE P+EVHYES GT
Sbjct: 571 NYKYTKEKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIAAREAPLEVHYESLGT 630
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGF 489
YY+IY YL++RSIKKEI IYIRTTVGHIS YREIEEAIQGF
Sbjct: 631 YYDIYGQYLIVRSIKKEILSIYIRTTVGHISIYREIEEAIQGF 673
[45][TOP]
>UniRef100_A9QC66 DNA-directed RNA polymerase (Fragment) n=1 Tax=Trachelium caeruleum
RepID=A9QC66_TRACE
Length = 689
Score = 261 bits (667), Expect = 3e-68
Identities = 125/169 (73%), Positives = 141/169 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGN+RGI RYNP N RN +N+K+ K
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNQRGICVNRYNPCNRRNYQNKKIDKK 578
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K+KEPFF NSYDAI AYRQK I DSP WLRW +DQR++++RE PIE+HYES GT
Sbjct: 579 NYKYTKEKEPFFSNSYDAISAYRQKGIKLDSPLWLRWRLDQRVIAAREAPIEIHYESLGT 638
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
YYEIY HYL++RSIKK+I IYIRTTVGHIS YREIEEAIQGF + SY
Sbjct: 639 YYEIYGHYLIVRSIKKDILYIYIRTTVGHISLYREIEEAIQGFCQACSY 687
[46][TOP]
>UniRef100_A8SE82 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ceratophyllum
demersum RepID=RPOC1_CERDE
Length = 680
Score = 260 bits (665), Expect = 4e-68
Identities = 126/170 (74%), Positives = 142/170 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPAMGDPISVPTQDMLIGLYVLT GNRRGI A RYN +C K + +KN
Sbjct: 512 LMFSHMNLLSPAMGDPISVPTQDMLIGLYVLTIGNRRGICANRYN--SCNRGKYQNETKN 569
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NSKY K KEP+F ++YDA+GAYRQK+IN D+P WLRW +DQR ++SREVPIEV YES GT
Sbjct: 570 NSKYTKAKEPYFSSAYDALGAYRQKRINLDNPLWLRWRLDQRAIASREVPIEVQYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY YL++RS+KKEI CIYIRTTVGHISFYREIEEAIQGF R SYG
Sbjct: 630 YHEIYGQYLIVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYSYG 679
[47][TOP]
>UniRef100_Q4FFY4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acorus americanus
RepID=Q4FFY4_ACOAM
Length = 696
Score = 259 bits (663), Expect = 8e-68
Identities = 122/170 (71%), Positives = 142/170 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GNRRGI RYNP N RN +N+ + N
Sbjct: 526 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNRRGIFVNRYNPCNRRNYQNKTVDNN 585
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K+ K+K+P+F +SYDA+GAY+QK+IN SP WLRW +DQR++ SREVPIEV YES GT
Sbjct: 586 NYKHTKEKKPYFLSSYDALGAYQQKRINLHSPLWLRWRLDQRVIGSREVPIEVQYESLGT 645
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y EIY HYL++RS+KKEI CIYIRTTVGHISFYREIEE++QGF R SYG
Sbjct: 646 YQEIYGHYLIVRSVKKEILCIYIRTTVGHISFYREIEESVQGFCRAYSYG 695
[48][TOP]
>UniRef100_Q06H06 DNA-directed RNA polymerase subunit beta' n=1 Tax=Drimys granadensis
RepID=RPOC1_DRIGR
Length = 681
Score = 259 bits (663), Expect = 8e-68
Identities = 124/170 (72%), Positives = 145/170 (85%), Gaps = 2/170 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSK- 177
LMFS NLLSPA+GDPIS+PTQDMLIGLYVLT GNRRGI A RYNP+N RN +N+ + +
Sbjct: 512 LMFSHMNLLSPAIGDPISIPTQDMLIGLYVLTIGNRRGICANRYNPWNRRNYQNKTVYEY 571
Query: 178 -NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
NN +Y K+KEP+FC+SYDA+GAYRQK+IN DSP WLRW +DQR+++ REVPIEV YES
Sbjct: 572 NNNYRYTKEKEPYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIAPREVPIEVQYESL 631
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDS 504
GTY+EIY HYL++RS+KKE CIYIRTTVGHISFYREIEEAIQGF R S
Sbjct: 632 GTYHEIYGHYLLVRSVKKESLCIYIRTTVGHISFYREIEEAIQGFCRAYS 681
[49][TOP]
>UniRef100_Q7YJX9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Calycanthus
floridus var. glaucus RepID=RPOC1_CALFG
Length = 678
Score = 259 bits (663), Expect = 8e-68
Identities = 126/168 (75%), Positives = 143/168 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSP +GDPISVPTQDMLIGLYVLT GNRRGI A RYNP+N NS+NE+++
Sbjct: 512 LMFSHMNLLSPTIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPWNRGNSQNERVNDT 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N Y KK EP+FC+S DA+GAYRQK+IN DSP WLRW +DQR+++SREVPIEV YES GT
Sbjct: 572 NYMYTKK-EPYFCSSSDALGAYRQKRINLDSPLWLRWRLDQRVIASREVPIEVQYESLGT 630
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDS 504
Y+EIY HYL++RSIKKEI CIYIRTTVGHISFYREIEEAIQGF R S
Sbjct: 631 YHEIYGHYLIVRSIKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYS 678
[50][TOP]
>UniRef100_A9LYH6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Acorus
RepID=RPOC1_ACOAM
Length = 682
Score = 259 bits (663), Expect = 8e-68
Identities = 122/170 (71%), Positives = 142/170 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GNRRGI RYNP N RN +N+ + N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNRRGIFVNRYNPCNRRNYQNKTVDNN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K+ K+K+P+F +SYDA+GAY+QK+IN SP WLRW +DQR++ SREVPIEV YES GT
Sbjct: 572 NYKHTKEKKPYFLSSYDALGAYQQKRINLHSPLWLRWRLDQRVIGSREVPIEVQYESLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y EIY HYL++RS+KKEI CIYIRTTVGHISFYREIEE++QGF R SYG
Sbjct: 632 YQEIYGHYLIVRSVKKEILCIYIRTTVGHISFYREIEESVQGFCRAYSYG 681
[51][TOP]
>UniRef100_Q2VEI5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Solanum tuberosum
RepID=RPOC1_SOLTU
Length = 687
Score = 259 bits (662), Expect = 1e-67
Identities = 127/169 (75%), Positives = 142/169 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGN RGI RYNP N RN +N+K S +
Sbjct: 518 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRS-D 576
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NS Y KEPFF NSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 577 NSYYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGT 636
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
+YEIY HYL++RS+KK+I IYIRTTVGHI+ YREIEEAIQGFSR SY
Sbjct: 637 FYEIYGHYLIVRSLKKKILFIYIRTTVGHIALYREIEEAIQGFSRAYSY 685
[52][TOP]
>UniRef100_Q2MIJ6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Solanum
RepID=RPOC1_SOLBU
Length = 681
Score = 259 bits (662), Expect = 1e-67
Identities = 127/169 (75%), Positives = 142/169 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGN RGI RYNP N RN +N+K S +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRS-D 570
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NS Y KEPFF NSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 571 NSYYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGT 630
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
+YEIY HYL++RS+KK+I IYIRTTVGHI+ YREIEEAIQGFSR SY
Sbjct: 631 FYEIYGHYLIVRSLKKKILFIYIRTTVGHIALYREIEEAIQGFSRAYSY 679
[53][TOP]
>UniRef100_C3KEF8 DNA-directed RNA polymerase n=1 Tax=Ceratophyllum demersum
RepID=C3KEF8_CERDE
Length = 680
Score = 259 bits (661), Expect = 1e-67
Identities = 125/170 (73%), Positives = 142/170 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GNRRGI A RYN +C K + +KN
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYN--SCNRGKYQNETKN 569
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NSKY K KEP+F ++YDA+GAYRQK+IN D+P WLRW +DQR ++SREVPIEV YES GT
Sbjct: 570 NSKYTKAKEPYFSSAYDALGAYRQKRINLDNPLWLRWRLDQRAIASREVPIEVQYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY YL++RS+KKEI CIYIRTTVGHISFYREIEEAIQGF R SYG
Sbjct: 630 YHEIYGQYLIVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYSYG 679
[54][TOP]
>UniRef100_P12116 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nicotiana tabacum
RepID=RPOC1_TOBAC
Length = 680
Score = 259 bits (661), Expect = 1e-67
Identities = 127/170 (74%), Positives = 142/170 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGN RGI RYNP N RN +N+K S +
Sbjct: 511 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRS-D 569
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NS Y KEPFF NSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 570 NSHYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
+YEIY HYL++RS+KK+I IYIRTTVGHI+ YREIEEAIQGFSR S G
Sbjct: 630 FYEIYGHYLIVRSLKKQILFIYIRTTVGHIALYREIEEAIQGFSRAYSSG 679
[55][TOP]
>UniRef100_Q3C1G8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nicotiana
sylvestris RepID=RPOC1_NICSY
Length = 681
Score = 259 bits (661), Expect = 1e-67
Identities = 127/170 (74%), Positives = 142/170 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGN RGI RYNP N RN +N+K S +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNHRGICVNRYNPCNRRNYQNQKRS-D 570
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NS Y KEPFF NSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 571 NSHYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGT 630
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
+YEIY HYL++RS+KK+I IYIRTTVGHI+ YREIEEAIQGFSR S G
Sbjct: 631 FYEIYGHYLIVRSLKKQILFIYIRTTVGHIALYREIEEAIQGFSRAYSSG 680
[56][TOP]
>UniRef100_Q06RE0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Jasminum nudiflorum
RepID=RPOC1_JASNU
Length = 691
Score = 259 bits (661), Expect = 1e-67
Identities = 125/172 (72%), Positives = 143/172 (83%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPIS+PTQDML+GLYVLTSGNRRGI RYNP+N RN +N++ N
Sbjct: 512 LMFSHMNLLSPAIGDPISIPTQDMLVGLYVLTSGNRRGICVNRYNPWNHRNYENQRSKNN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K EP F NSYDAIGAYRQK+I DSP WLRWP+DQR+++SRE PIEVHYES GT
Sbjct: 572 NYRYTK--EPLFSNSYDAIGAYRQKRIKLDSPLWLRWPLDQRVIASRESPIEVHYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRV--DSYG 510
YYEIY HYL++RSIKKEI +YIRTTVGHIS YREIEEAI+GFS+ SYG
Sbjct: 630 YYEIYGHYLIVRSIKKEILFLYIRTTVGHISLYREIEEAIEGFSQACSSSYG 681
[57][TOP]
>UniRef100_C3UNW3 DNA-directed RNA polymerase n=1 Tax=Megaleranthis saniculifolia
RepID=C3UNW3_9MAGN
Length = 680
Score = 258 bits (660), Expect = 2e-67
Identities = 125/169 (73%), Positives = 143/169 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLT GNRRGI A RYNP+N RN +NEK+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNHRNYQNEKIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EP+FC+SYDA+GAY QK+IN DSP WLRW +DQR+++ REVPIEV ESFGT
Sbjct: 572 NHKYTK--EPYFCSSYDALGAYWQKRINLDSPLWLRWRLDQRVIAPREVPIEVQCESFGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++R++KKEI CI IRTTVGHISFYREIEEAIQGF R SY
Sbjct: 630 YHEIYGHYLIVRNVKKEILCIDIRTTVGHISFYREIEEAIQGFCRACSY 678
[58][TOP]
>UniRef100_Q33C47 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nicotiana
tomentosiformis RepID=RPOC1_NICTO
Length = 681
Score = 258 bits (659), Expect = 2e-67
Identities = 127/170 (74%), Positives = 142/170 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSGN RGI RYNP N N +N+K S +
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNPRGICVNRYNPCNRINYQNKKRS-D 570
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NS Y KEPFF NSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 571 NSHYKYTKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASRETPIEVHYESLGT 630
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
+YEIY HYL++RS+KK+I IYIRTTVGHI+ YREIEEAIQGFSR SYG
Sbjct: 631 FYEIYGHYLIVRSLKKQILFIYIRTTVGHIALYREIEEAIQGFSRAYSYG 680
[59][TOP]
>UniRef100_A6MMJ8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Dioscorea
elephantipes RepID=RPOC1_DIOEL
Length = 685
Score = 258 bits (658), Expect = 3e-67
Identities = 120/171 (70%), Positives = 143/171 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GNRRGI A RYN +NCRNS+N+ ++ N
Sbjct: 515 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNTYNCRNSQNKILNNN 574
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
Y+K K + C+SYDA+GAYRQK+I+ DSP WLRW +DQR++ SREVPIE+ YES GT
Sbjct: 575 KYNYIKMKATYCCSSYDALGAYRQKRIDLDSPLWLRWRLDQRVIGSREVPIEIQYESLGT 634
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
Y+EIY HYL++RS+KK+IR IYIRTT+GHISFYREIEEA+QGF SY I
Sbjct: 635 YHEIYRHYLIVRSVKKKIRWIYIRTTIGHISFYREIEEAVQGFCWAYSYVI 685
[60][TOP]
>UniRef100_A4GYP9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Populus trichocarpa
RepID=RPOC1_POPTR
Length = 689
Score = 257 bits (656), Expect = 5e-67
Identities = 124/170 (72%), Positives = 141/170 (82%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLTSGNRRGI A RYNPFNCRN +NEK+ N
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICANRYNPFNCRNFQNEKIDAN 578
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+K KEPFFCNSYDAIGAYRQK+IN +SP WLRW +DQ +++SRE PIE H+ S GT
Sbjct: 579 ANKDKYIKEPFFCNSYDAIGAYRQKRINLESPLWLRWQLDQGLIASREAPIEGHFGSLGT 638
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY HYL++RSIKK+I IYIRTTVGHI YREIEEAIQGF + S G
Sbjct: 639 YHEIYGHYLIVRSIKKKILSIYIRTTVGHIYLYREIEEAIQGFCQACSDG 688
[61][TOP]
>UniRef100_Q6EW57 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nymphaea alba
RepID=RPOC1_NYMAL
Length = 684
Score = 256 bits (655), Expect = 6e-67
Identities = 125/172 (72%), Positives = 144/172 (83%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDML+GLYVLT GNRRGI A RYNP N RN +NE+M +
Sbjct: 512 LMFSHTNLLSPAIGDPISVPTQDMLMGLYVLTMGNRRGICANRYNPCNPRNHQNERMDHS 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N +Y K KEP+FC+SYDA+GAYRQK I+ S WLRW +DQR+++S REVPIEV YES
Sbjct: 572 NYEYRKGKEPYFCSSYDALGAYRQKGIDLYSTLWLRWRLDQRVIASINREVPIEVQYESL 631
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
GTY+EIY+HY V+RS+KK + CIYIRTTVGHISFYREIEEAIQGF R SYG
Sbjct: 632 GTYHEIYDHYRVVRSVKKGMLCIYIRTTVGHISFYREIEEAIQGFCRSYSYG 683
[62][TOP]
>UniRef100_Q06GR9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Piper cenocladum
RepID=RPOC1_PIPCE
Length = 688
Score = 256 bits (654), Expect = 8e-67
Identities = 123/174 (70%), Positives = 144/174 (82%), Gaps = 5/174 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNE----- 165
LMFS NLLSPA+G PISVPTQDMLIGLYVLT GNR+G+ A RYNP+N RN +NE
Sbjct: 512 LMFSHMNLLSPAIGSPISVPTQDMLIGLYVLTIGNRQGVCANRYNPWNRRNYQNETVDHT 571
Query: 166 KMSKNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHY 345
K + N +Y K+KEP+FC+SYDA+GAYRQK+I+ D+P WLRW +DQRI+S REVPIEV Y
Sbjct: 572 KYDRTNYRYTKEKEPYFCSSYDALGAYRQKRIHLDTPLWLRWRLDQRIISLREVPIEVQY 631
Query: 346 ESFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
ES GTY+EIY YL+++S+KKEI CIYIRTTVGHISFYREIEEAIQGF R SY
Sbjct: 632 ESLGTYHEIYRPYLIVKSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYSY 685
[63][TOP]
>UniRef100_Q56P12 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lactuca sativa
RepID=RPOC1_LACSA
Length = 689
Score = 256 bits (654), Expect = 8e-67
Identities = 124/163 (76%), Positives = 136/163 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSP +GDPIS PTQDML GLYVLTSGNRRGI RYNP N RN +NE N
Sbjct: 512 LMFSHMNLLSPTIGDPISAPTQDMLSGLYVLTSGNRRGICVNRYNPCNRRNYQNED---N 568
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY KKKEPFFCN YDAIGAYRQK+IN SP WLRW +DQR++++REVPIE+HYES GT
Sbjct: 569 NYKYTKKKEPFFCNPYDAIGAYRQKRINLGSPLWLRWRLDQRVIAAREVPIEIHYESVGT 628
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGF 489
YYEIY HYL++RSIKKEI IYIRTT+GHIS YREIEEAIQGF
Sbjct: 629 YYEIYGHYLIVRSIKKEILYIYIRTTLGHISLYREIEEAIQGF 671
[64][TOP]
>UniRef100_Q14FG6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Populus alba
RepID=RPOC1_POPAL
Length = 682
Score = 256 bits (653), Expect = 1e-66
Identities = 123/170 (72%), Positives = 141/170 (82%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLTSGNRRGI A RYNPFNCRN +NEK+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICANRYNPFNCRNFQNEKIDAN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+K KEPFFCNSYDAIGAYRQK+IN +SP WLRW +DQ +++SRE PIE H+ S GT
Sbjct: 572 ANKDKYIKEPFFCNSYDAIGAYRQKRINLESPLWLRWQLDQGLIASREAPIEGHFGSLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y+EIY HYL++R+IKK+I IYIRTTVGHI YREIEEAIQGF + S G
Sbjct: 632 YHEIYGHYLIVRNIKKKILSIYIRTTVGHIYLYREIEEAIQGFCQACSDG 681
[65][TOP]
>UniRef100_A7Y3B6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ipomoea purpurea
RepID=RPOC1_IPOPU
Length = 687
Score = 256 bits (653), Expect = 1e-66
Identities = 126/168 (75%), Positives = 139/168 (82%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTS NRRGI RY N RNS+ ++ +
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSENRRGICLNRYTKCNRRNSQTKRSDNS 578
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY KKEP FCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 579 NYKY--KKEPVFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGT 636
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDS 504
YYEIY HYL++RS+KKEI IYIRTTVGHIS YREIEEAIQGFSR S
Sbjct: 637 YYEIYGHYLIVRSLKKEIIFIYIRTTVGHISLYREIEEAIQGFSRAGS 684
[66][TOP]
>UniRef100_Q1KXX1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Helianthus annuus
RepID=RPOC1_HELAN
Length = 689
Score = 256 bits (653), Expect = 1e-66
Identities = 123/163 (75%), Positives = 136/163 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSP +GDPIS PTQDML GLYVLTSGNRRGI RYNP N RN +NE N
Sbjct: 512 LMFSHMNLLSPTIGDPISAPTQDMLSGLYVLTSGNRRGICVNRYNPCNRRNYQNED---N 568
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY KKKEPFFCN+YDAIGAYRQK+IN SP WLRW +DQR++++RE PIE+HYES GT
Sbjct: 569 NYKYTKKKEPFFCNAYDAIGAYRQKRINLGSPLWLRWRLDQRVIAAREAPIEIHYESLGT 628
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGF 489
YYEIY HYL++RSIKKEI IYIRTT+GHIS YREIEEAIQGF
Sbjct: 629 YYEIYGHYLIVRSIKKEILYIYIRTTLGHISLYREIEEAIQGF 671
[67][TOP]
>UniRef100_Q5QA71 DNA-directed RNA polymerase subunit beta' n=1 Tax=Acorus gramineus
RepID=RPOC1_ACOGR
Length = 682
Score = 255 bits (652), Expect = 1e-66
Identities = 120/170 (70%), Positives = 140/170 (82%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GN RGI RYNP N RN +N+ + N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTMGNHRGIFVNRYNPCNRRNYQNKTVDNN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K+ K+K+P+F +SYDA+GAY+QK+IN P WLRW +DQR++ SREVPIEV YES GT
Sbjct: 572 NYKHTKEKKPYFFSSYDALGAYQQKRINLHRPLWLRWRLDQRVIGSREVPIEVQYESLGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
Y EIY HYL++RS+KKEI CIYIRTTVGHISFYREIEE++QGF R SYG
Sbjct: 632 YQEIYGHYLIVRSVKKEILCIYIRTTVGHISFYREIEESVQGFCRAYSYG 681
[68][TOP]
>UniRef100_Q4FFY2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Nuphar advena
RepID=Q4FFY2_NUPAD
Length = 686
Score = 255 bits (651), Expect = 2e-66
Identities = 123/171 (71%), Positives = 142/171 (83%), Gaps = 2/171 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDML+GLYVLT GNRRGI A RYNP N RN +NE+ N
Sbjct: 516 LMFSHTNLLSPAIGDPISVPTQDMLMGLYVLTMGNRRGICANRYNPCNSRNYQNERTDHN 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N KY K KEP+FC+SYDA+GAYRQK I+ S WLRW +DQR+++S RE+PIEV YES
Sbjct: 576 NYKYRKGKEPYFCSSYDALGAYRQKGIDLYSTLWLRWRLDQRVIASINREIPIEVQYESL 635
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
GTY+EIY+HY V+RS+KK + CIYIRTTVGHISFYREIEEA+QGF R SY
Sbjct: 636 GTYHEIYDHYRVVRSVKKGMLCIYIRTTVGHISFYREIEEAVQGFCRSYSY 686
[69][TOP]
>UniRef100_A1XFU6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nuphar advena
RepID=RPOC1_NUPAD
Length = 693
Score = 255 bits (651), Expect = 2e-66
Identities = 123/171 (71%), Positives = 142/171 (83%), Gaps = 2/171 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDML+GLYVLT GNRRGI A RYNP N RN +NE+ N
Sbjct: 519 LMFSHTNLLSPAIGDPISVPTQDMLMGLYVLTMGNRRGICANRYNPCNSRNYQNERTDHN 578
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N KY K KEP+FC+SYDA+GAYRQK I+ S WLRW +DQR+++S RE+PIEV YES
Sbjct: 579 NYKYRKGKEPYFCSSYDALGAYRQKGIDLYSTLWLRWRLDQRVIASINREIPIEVQYESL 638
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
GTY+EIY+HY V+RS+KK + CIYIRTTVGHISFYREIEEA+QGF R SY
Sbjct: 639 GTYHEIYDHYRVVRSVKKGMLCIYIRTTVGHISFYREIEEAVQGFCRSYSY 689
[70][TOP]
>UniRef100_Q09MI7 DNA-directed RNA polymerase subunit beta' n=1 Tax=Citrus sinensis
RepID=RPOC1_CITSI
Length = 680
Score = 255 bits (651), Expect = 2e-66
Identities = 124/170 (72%), Positives = 140/170 (82%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSP +GDPIS+PTQDMLIGLYVLTSGNRRGI A RYN +N RN +E++ N
Sbjct: 512 LMFSHMNLLSPTIGDPISIPTQDMLIGLYVLTSGNRRGICANRYNTWNRRNYPDERIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+ Y K EP FCNSYDAIGAYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GT
Sbjct: 572 SYTYTK--EPLFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRLIASREAPIEVHYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
+EIY HYL++RS+KKEI IYIRTTVGHIS YREIEEAIQGF R SYG
Sbjct: 630 SHEIYGHYLIVRSVKKEILSIYIRTTVGHISLYREIEEAIQGFCRACSYG 679
[71][TOP]
>UniRef100_A9QBZ3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Scaevola aemula
RepID=A9QBZ3_9ASTR
Length = 680
Score = 254 bits (648), Expect = 4e-66
Identities = 127/173 (73%), Positives = 142/173 (82%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLTSGNRRGI RYN N +N +NE N
Sbjct: 511 LMFSHINLLSPAIGDPISVPTQDMLLGLYVLTSGNRRGICLNRYNQSNRKNYQNED---N 567
Query: 181 NSKYM--KKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
N KY K+KEPFF NSYDAIGAYRQK+IN DSP WLRW +DQR+++ REVPIE+HYES
Sbjct: 568 NYKYKSTKEKEPFFSNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIAVREVPIEIHYESL 627
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTYYEIY HYL++RSIKKEI IYIRTTVGHIS YREIEEAIQGF + SY +
Sbjct: 628 GTYYEIYGHYLIVRSIKKEIIYIYIRTTVGHISLYREIEEAIQGFCQACSYDL 680
[72][TOP]
>UniRef100_P11705 DNA-directed RNA polymerase subunit beta' n=1 Tax=Spinacia oleracea
RepID=RPOC1_SPIOL
Length = 677
Score = 254 bits (648), Expect = 4e-66
Identities = 123/163 (75%), Positives = 139/163 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLY+LTSGNRRGI A RYNP+N + +NE++
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGICANRYNPWNHKTYQNERIDDT 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K MK EPFFCN YDAIGAYRQK+I+ DSP WLRW +DQRI++S+E PIEVHYES GT
Sbjct: 572 NYKSMK--EPFFCNFYDAIGAYRQKRIHLDSPLWLRWQLDQRIIASKEAPIEVHYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGF 489
Y+EIY HYL+IRS+KKEI IYIRTTVGHIS YREIEEAIQGF
Sbjct: 630 YHEIYAHYLIIRSVKKEIIDIYIRTTVGHISLYREIEEAIQGF 672
[73][TOP]
>UniRef100_B0Z4M6 DNA-directed RNA polymerase subunit beta' n=5 Tax=Oenothera
RepID=RPOC1_OENAR
Length = 679
Score = 253 bits (647), Expect = 5e-66
Identities = 122/169 (72%), Positives = 141/169 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPAMGDPISVPTQDMLIGLY+LTSGN RGI RYNP+N N +NE++S N
Sbjct: 512 LMFSHMNLLSPAMGDPISVPTQDMLIGLYILTSGNPRGICTNRYNPWNRSNYQNERISDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KKKEPFFCNSYDAIGAYRQK+I+ DSP WLRW +DQR+++SREVPIEV YES GT
Sbjct: 572 N---WKKKEPFFCNSYDAIGAYRQKRIHLDSPLWLRWRLDQRVIASREVPIEVQYESLGT 628
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HY+++RS+K EI +YIRTTVGHIS +RE+EEAIQGF R Y
Sbjct: 629 YHEIYGHYIIVRSVKTEILWMYIRTTVGHISLFREMEEAIQGFCRARWY 677
[74][TOP]
>UniRef100_A9QBA4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Elaeis oleifera
RepID=A9QBA4_ELAOL
Length = 685
Score = 253 bits (646), Expect = 7e-66
Identities = 120/169 (71%), Positives = 140/169 (82%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT NRRGI A R+NP+N N +N + N
Sbjct: 517 LMFSHINLLSPAIGDPISVPTQDMLIGLYVLTIRNRRGICANRHNPYNRGNYQNNTVDNN 576
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+ KY K+KE +F +SYD +GAYRQK+I+ DSP WLRW +DQR++ SREVPIEV YES GT
Sbjct: 577 DYKYTKEKELYFSSSYDVLGAYRQKRISLDSPLWLRWRLDQRVIGSREVPIEVQYESLGT 636
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIYEHYL++ S+KKEI CIYIRTT+GHISFYREIEEAIQGF R SY
Sbjct: 637 YHEIYEHYLIVGSVKKEIHCIYIRTTLGHISFYREIEEAIQGFCRAYSY 685
[75][TOP]
>UniRef100_Q4FFY1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ranunculus macranthus
RepID=Q4FFY1_RANMC
Length = 688
Score = 252 bits (643), Expect = 2e-65
Identities = 122/169 (72%), Positives = 142/169 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLT GNRRGI A RYNP+N RNS+NEK+ N
Sbjct: 520 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNHRNSQNEKIDDN 579
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N Y K EP+FC+SYDA+GA+RQK+IN DSP WLRW +DQR+++ REVPIEV ESFGT
Sbjct: 580 NHTYTK--EPYFCSSYDALGAFRQKRINLDSPLWLRWRLDQRVIAPREVPIEVQCESFGT 637
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++R++ K+I CI IRTTVG ISFYREIEEAIQGF R SY
Sbjct: 638 YHEIYGHYLIVRNVNKKIFCIDIRTTVGLISFYREIEEAIQGFCRACSY 686
[76][TOP]
>UniRef100_A1XGM9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Ranunculus
macranthus RepID=RPOC1_RANMC
Length = 680
Score = 252 bits (643), Expect = 2e-65
Identities = 122/169 (72%), Positives = 142/169 (84%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDML+GLYVLT GNRRGI A RYNP+N RNS+NEK+ N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNHRNSQNEKIDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N Y K EP+FC+SYDA+GA+RQK+IN DSP WLRW +DQR+++ REVPIEV ESFGT
Sbjct: 572 NHTYTK--EPYFCSSYDALGAFRQKRINLDSPLWLRWRLDQRVIAPREVPIEVQCESFGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
Y+EIY HYL++R++ K+I CI IRTTVG ISFYREIEEAIQGF R SY
Sbjct: 630 YHEIYGHYLIVRNVNKKIFCIDIRTTVGLISFYREIEEAIQGFCRACSY 678
[77][TOP]
>UniRef100_C8XU08 RNA polymerase beta n=1 Tax=Coix lacryma-jobi RepID=C8XU08_COILA
Length = 683
Score = 251 bits (642), Expect = 2e-65
Identities = 127/174 (72%), Positives = 144/174 (82%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C NS N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCGNSPNKKINYN 569
Query: 181 NS---KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
N+ KY K+KEP F +SYDA+GAYRQK+I +SP WLRW +DQRI+ SREVPIEV YES
Sbjct: 570 NNNYYKYTKEKEPHFSSSYDALGAYRQKRIGLNSPLWLRWKLDQRIVGSREVPIEVQYES 629
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
FGTY+EIY HYLV+ + KKEIR IYIRTT+GHISFYREIEEAIQGFSR SY I
Sbjct: 630 FGTYHEIYAHYLVVGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSRAYSYTI 683
[78][TOP]
>UniRef100_B2LMI1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Guizotia
abyssinica RepID=RPOC1_GUIAB
Length = 696
Score = 251 bits (642), Expect = 2e-65
Identities = 121/163 (74%), Positives = 135/163 (82%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSP +GDPIS PTQDML GLYVLTSGNRRGI RYNP N RN +NE N
Sbjct: 519 LMFSHMNLLSPTIGDPISAPTQDMLSGLYVLTSGNRRGICVNRYNPCNRRNYQNED---N 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY KKKEPFFCN+YDAIGAYRQK+I+ SP WLRW +DQR++++RE PIE+HYES GT
Sbjct: 576 NYKYTKKKEPFFCNAYDAIGAYRQKRIHLGSPLWLRWRLDQRVIAAREAPIEIHYESLGT 635
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGF 489
YYEIY HYL++RSIKKEI IYIRTT+GHI YREIEEAIQGF
Sbjct: 636 YYEIYGHYLIVRSIKKEILYIYIRTTLGHIYLYREIEEAIQGF 678
[79][TOP]
>UniRef100_A1E9R5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Sorghum bicolor
RepID=RPOC1_SORBI
Length = 683
Score = 251 bits (640), Expect = 3e-65
Identities = 127/174 (72%), Positives = 143/174 (82%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C NS N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCGNSPNKKINYN 569
Query: 181 NS---KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
N+ KY K KEP F +SYDA+GAYRQK+I +SP WLRW +DQRI+ SREVPIEV YES
Sbjct: 570 NNNYYKYTKDKEPHFSSSYDALGAYRQKRIGLNSPLWLRWKLDQRIVGSREVPIEVQYES 629
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
FGTY+EIY HYLV+ + KKEIR IYIRTT+GHISFYREIEEAIQGFSR SY I
Sbjct: 630 FGTYHEIYAHYLVVGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSRAYSYTI 683
[80][TOP]
>UniRef100_C7SM28 RNA polymerase beta (Fragment) n=1 Tax=Joinvillea plicata
RepID=C7SM28_9POAL
Length = 419
Score = 250 bits (639), Expect = 5e-65
Identities = 124/172 (72%), Positives = 141/172 (81%), Gaps = 1/172 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN NC N N+K+ N
Sbjct: 250 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--NCGNYPNQKVIYN 307
Query: 181 -NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
N KY K KEP+FC+ YDA+GAYRQK+I+ DSP WLRW +DQR++ SREVPIEV YES G
Sbjct: 308 TNYKYTKDKEPYFCSFYDALGAYRQKRISLDSPLWLRWKLDQRVIGSREVPIEVQYESLG 367
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
T +EIY HYL++ + KKEIRCIYIRTT+GHISFYREIEEAIQGFS+ SY I
Sbjct: 368 TSHEIYAHYLIVGNRKKEIRCIYIRTTLGHISFYREIEEAIQGFSQAYSYTI 419
[81][TOP]
>UniRef100_Q6L3A6 DNA-directed RNA polymerase subunit beta' n=2 Tax=Saccharum
RepID=RPOC1_SACHY
Length = 683
Score = 250 bits (639), Expect = 5e-65
Identities = 126/174 (72%), Positives = 143/174 (82%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C NS N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCGNSPNKKINYN 569
Query: 181 NS---KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
N+ KY K KEP F +SYDA+GAYRQK+I +SP WLRW +DQRI+ SREVPIEV YES
Sbjct: 570 NNNYYKYTKDKEPHFSSSYDALGAYRQKRIGLNSPLWLRWKLDQRIVGSREVPIEVQYES 629
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
FGTY+EIY HYLV+ + KKEIR IYIRTT+GHISFYREIEEA+QGFSR SY I
Sbjct: 630 FGTYHEIYAHYLVVGNRKKEIRSIYIRTTLGHISFYREIEEAVQGFSRAYSYTI 683
[82][TOP]
>UniRef100_P60287 DNA-directed RNA polymerase subunit beta' n=1 Tax=Amborella
trichopoda RepID=RPOC1_AMBTC
Length = 680
Score = 250 bits (639), Expect = 5e-65
Identities = 121/167 (72%), Positives = 140/167 (83%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GNRRGI RYNP N RN +NE + N
Sbjct: 512 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICTNRYNPCNYRNYQNEIVDDN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N KY K+KEP+FC+SYDA+GAYRQK+I+ SP WLRW +DQ +++S REVPIEV YES
Sbjct: 572 NYKYTKEKEPYFCSSYDALGAYRQKRIDLYSPLWLRWRLDQCVIASINREVPIEVQYESL 631
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
G Y+EI+EHY +++S+KKEI CIYIRTTVGHISFYREIEEAIQGF R
Sbjct: 632 GIYHEIHEHYRIVKSVKKEIVCIYIRTTVGHISFYREIEEAIQGFCR 678
[83][TOP]
>UniRef100_B5ANL5 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chasmanthium
latifolium RepID=B5ANL5_9POAL
Length = 184
Score = 250 bits (638), Expect = 6e-65
Identities = 127/174 (72%), Positives = 142/174 (81%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMS-- 174
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C NS N+K+S
Sbjct: 13 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCGNSPNKKVSYN 70
Query: 175 -KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
KN KY K KEP F +SYDA+GAYRQK+I +SP WLRW +DQRI+ SREVPIEV YES
Sbjct: 71 KKNYYKYTKDKEPHFSSSYDALGAYRQKRIGLNSPLWLRWKLDQRIIGSREVPIEVQYES 130
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
FGTY+EIY HYL++ + KKEIR IYIRTT+GHISFYREIEEAIQGFSR SY I
Sbjct: 131 FGTYHEIYAHYLIVGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSRAYSYTI 184
[84][TOP]
>UniRef100_A9L987 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lemna minor
RepID=RPOC1_LEMMI
Length = 690
Score = 250 bits (638), Expect = 6e-65
Identities = 122/170 (71%), Positives = 140/170 (82%), Gaps = 1/170 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLT GN RGI A RYN FNC+N +N + +
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTIGNPRGICANRYNFFNCKNDENAPLDND 578
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQR-IMSSREVPIEVHYESFG 357
N + K+KEP F +SYDA+GAYR+K+I DSP WLRW +DQR I+ SREVP+EV YESFG
Sbjct: 579 NYQATKEKEPHFSSSYDALGAYRRKRIRLDSPLWLRWRLDQRVIIGSREVPLEVQYESFG 638
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
TY+EIY HYL++RS+KKEI IYIRTTVGHISFYREIEEAIQGF R SY
Sbjct: 639 TYHEIYRHYLIVRSVKKEICSIYIRTTVGHISFYREIEEAIQGFYRAYSY 688
[85][TOP]
>UniRef100_A9QBJ7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Musa acuminata
RepID=A9QBJ7_MUSAC
Length = 695
Score = 249 bits (635), Expect = 1e-64
Identities = 121/172 (70%), Positives = 144/172 (83%), Gaps = 4/172 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPF--NCRNSKNEKMS 174
LMFS NLLSPA+GDPISVPTQDMLIGLY+LT GNRRGI A RYNP+ +C N +N+K+
Sbjct: 524 LMFSHMNLLSPAIGDPISVPTQDMLIGLYLLTIGNRRGICANRYNPYRYSCGNYQNKKVD 583
Query: 175 --KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYE 348
KN+ +Y +KKEP+F +SYDA+GAY+QK+I+ DSP WLRW +DQR++ SREVPIEV YE
Sbjct: 584 NKKNDYRYTEKKEPYFSSSYDALGAYQQKRISLDSPLWLRWRLDQRVIGSREVPIEVQYE 643
Query: 349 SFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDS 504
S GTY+EIY HYL+ S+ KEIRCIYIRTT+GHISFYREIEEAIQGF R S
Sbjct: 644 SLGTYHEIYGHYLIEGSVTKEIRCIYIRTTLGHISFYREIEEAIQGFCRAYS 695
[86][TOP]
>UniRef100_B7T3F2 DNA-directed RNA polymerase n=1 Tax=Geranium macrorrhizum
RepID=B7T3F2_9ROSI
Length = 683
Score = 248 bits (633), Expect = 2e-64
Identities = 117/173 (67%), Positives = 144/173 (83%), Gaps = 3/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYN---PFNCRNSKNEKM 171
LMFS NLL+P++GDPI VPTQDMLIGLY+LTSGNRRG+ RYN P NC+ ++ E++
Sbjct: 511 LMFSHMNLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVNRYNLWNPINCQ-TETERI 569
Query: 172 SKNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
NNS+ MK KEP FCNSYDAIGAY+QK+I+ DS FWL+W +DQR++ SR VP+EVHYES
Sbjct: 570 DDNNSRSMKGKEPLFCNSYDAIGAYQQKRIHLDSSFWLQWRLDQRLIVSRGVPVEVHYES 629
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
GT++EIY H+L++RS+KKEI CIYIRTT+GHI YREIEEAIQGF +V SYG
Sbjct: 630 LGTHHEIYGHFLIVRSVKKEILCIYIRTTLGHIFLYREIEEAIQGFYQVSSYG 682
[87][TOP]
>UniRef100_P16024 DNA-directed RNA polymerase subunit beta' n=1 Tax=Zea mays
RepID=RPOC1_MAIZE
Length = 683
Score = 248 bits (633), Expect = 2e-64
Identities = 126/174 (72%), Positives = 142/174 (81%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNR GI A RYN +C NS N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRLGICANRYN--SCGNSPNKKVNYN 569
Query: 181 NS---KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
N+ KY K KEP F +SYDA+GAYRQK+I +SP WLRW +DQRI+ SREVPIEV YES
Sbjct: 570 NNNYYKYTKDKEPHFSSSYDALGAYRQKRIGLNSPLWLRWKLDQRIVGSREVPIEVQYES 629
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
FGTY+EIY HYLV+ + KKEIR IYIRTT+GHISFYREIEEAIQGFSR SY I
Sbjct: 630 FGTYHEIYAHYLVVGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSRAYSYTI 683
[88][TOP]
>UniRef100_B2ZEA0 DNA-directed RNA polymerase n=1 Tax=Phyllostachys propinqua
RepID=B2ZEA0_9POAL
Length = 682
Score = 248 bits (632), Expect = 3e-64
Identities = 123/173 (71%), Positives = 142/173 (82%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C N N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCANYPNQKVNYN 569
Query: 181 NS--KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
N+ KY K KEP F NSYDA+GAYRQK+I+ DSP WLRW +DQR++ SREVPIEV YES
Sbjct: 570 NNNYKYTKDKEPHFSNSYDALGAYRQKRISLDSPLWLRWKLDQRVIGSREVPIEVQYESL 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTY+EIY HYL++ + KKEIR IYIR+T+GHISFYREIEEAIQGFS+ SY I
Sbjct: 630 GTYHEIYAHYLIVGNRKKEIRSIYIRSTLGHISFYREIEEAIQGFSQAYSYTI 682
[89][TOP]
>UniRef100_B7T311 DNA-directed RNA polymerase n=1 Tax=Erodium texanum
RepID=B7T311_EROTE
Length = 679
Score = 247 bits (630), Expect = 5e-64
Identities = 114/166 (68%), Positives = 139/166 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLL+P++GDPI VPTQDMLIGLY+LTSGNR+G+ RYN N RN + +++
Sbjct: 512 LMFSHMNLLAPSIGDPICVPTQDMLIGLYILTSGNRQGLCGNRYNLSNRRNCQTDRIDDK 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
NS+YMK KEP FCNSYDAIGAYRQK+I DSPFWLRW +DQ ++ SR VP+EVHYES GT
Sbjct: 572 NSRYMKGKEPVFCNSYDAIGAYRQKRIRLDSPFWLRWRLDQGLIVSRGVPVEVHYESSGT 631
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRV 498
+++IY H+L++RS+KKEI CIYIRTT+GHI YREIEEAIQGFS+V
Sbjct: 632 HHQIYGHFLIVRSVKKEILCIYIRTTLGHIFLYREIEEAIQGFSQV 677
[90][TOP]
>UniRef100_C6GJ47 DNA-directed RNA polymerase n=2 Tax=Bambuseae RepID=C6GJ47_BAMOL
Length = 682
Score = 246 bits (629), Expect = 7e-64
Identities = 123/173 (71%), Positives = 142/173 (82%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C N N+K+S N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCGNYPNQKVSYN 569
Query: 181 NS--KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
N+ KY K KEP F +SYDA+GAYRQK+I+ DSP WLRW +DQR++ SREVPIEV YES
Sbjct: 570 NNNYKYTKDKEPHFSSSYDALGAYRQKRISLDSPLWLRWKLDQRVIGSREVPIEVQYESL 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTY+EIY HYL++ + KKEIR IYIR+T+GHISFYREIEEAIQGFS+ SY I
Sbjct: 630 GTYHEIYAHYLIVGNRKKEIRSIYIRSTLGHISFYREIEEAIQGFSQAYSYTI 682
[91][TOP]
>UniRef100_A1E9Z9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Agrostis
stolonifera RepID=RPOC1_AGRST
Length = 682
Score = 246 bits (627), Expect = 1e-63
Identities = 123/173 (71%), Positives = 140/173 (80%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMS-- 174
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GN RGI A RYN +C N N+K++
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNHRGIYANRYN--SCENYPNQKVNYN 569
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
NNSKY K KEP F +SYDA+GAYRQK I+ DSP WLRW +DQR++ SREVPIEV YES
Sbjct: 570 NNNSKYTKDKEPHFSSSYDAMGAYRQKLISLDSPLWLRWKLDQRVIGSREVPIEVQYESL 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTY+EIY HYL++ + KKEIR IYIRTT+GHISFYREIEEAIQGFS+ SY I
Sbjct: 630 GTYHEIYAHYLIVGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSQAYSYTI 682
[92][TOP]
>UniRef100_Q9XPS8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Triticum aestivum
RepID=RPOC1_WHEAT
Length = 683
Score = 243 bits (621), Expect = 6e-63
Identities = 123/172 (71%), Positives = 139/172 (80%), Gaps = 3/172 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMS-- 174
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT G RRGI A RYN +CRN N K++
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGKRRGICANRYN--SCRNYPNLKVNYN 569
Query: 175 -KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
NNSKY K KEP F +SYDA+GAYRQK I+ DSP WLRW +DQR++ SREVPIEV YES
Sbjct: 570 NNNNSKYRKDKEPHFSSSYDALGAYRQKLISLDSPLWLRWNLDQRVIGSREVPIEVQYES 629
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
GTY+EIY HYL++ + KKEIR IYIRTT+GHISFYREIEEAIQGFS+ SY
Sbjct: 630 LGTYHEIYAHYLIMGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSQAYSY 681
[93][TOP]
>UniRef100_B7T415 DNA-directed RNA polymerase n=1 Tax=Monsonia vanderietiae
RepID=B7T415_9ROSI
Length = 698
Score = 242 bits (618), Expect = 1e-62
Identities = 116/172 (67%), Positives = 139/172 (80%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLL+P+MGDPI VPTQDMLIGLY+LTSGNRRG RYNP+N RN + E++ N
Sbjct: 526 LMFSHMNLLAPSMGDPICVPTQDMLIGLYILTSGNRRGPCVNRYNPWNRRNFQTERIYDN 585
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+++YM KEP FCNSYDAIGAY QK+I+ DSPFWLRW Q ++ SR VP+EVHYES GT
Sbjct: 586 SARYMNGKEPLFCNSYDAIGAYGQKRIHLDSPFWLRWRPCQGLILSRGVPVEVHYESLGT 645
Query: 361 YYEIYEHYLVIRSI--KKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
++EIY H+L++RSI KKEI CIYIRTT+GHI YREIEEAIQGF ++ YG
Sbjct: 646 HHEIYGHFLIVRSIKKKKEILCIYIRTTLGHIFLYREIEEAIQGFYQISPYG 697
[94][TOP]
>UniRef100_B7T3M3 DNA-directed RNA polymerase n=1 Tax=Geranium palmatum
RepID=B7T3M3_9ROSI
Length = 683
Score = 241 bits (616), Expect = 2e-62
Identities = 115/171 (67%), Positives = 141/171 (82%), Gaps = 2/171 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNE--KMS 174
LMFS NLL+P++GDPI VPTQDMLIGLY+LTSGNRRG+ RYN +N NS+ E ++
Sbjct: 511 LMFSHMNLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVNRYNLWNSINSQTETERID 570
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
+NN +YMK KEP FCNSYDAIGAYRQK+I+ +S FW RW +DQR++ SR VP+EVHYES
Sbjct: 571 ENNFRYMKGKEPLFCNSYDAIGAYRQKRIHLNSSFWFRWRLDQRLIVSRGVPVEVHYESA 630
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
GT++EIY H+L++RS+K EI IYIRTT+GHI FYREIEEAIQGF +V SY
Sbjct: 631 GTHHEIYGHFLIVRSLKNEIIYIYIRTTLGHIFFYREIEEAIQGFYQVSSY 681
[95][TOP]
>UniRef100_B8Y2W5 DNA-directed RNA polymerase n=1 Tax=Festuca arundinacea
RepID=B8Y2W5_FESAR
Length = 674
Score = 241 bits (615), Expect = 3e-62
Identities = 121/165 (73%), Positives = 137/165 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C N N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCVNYPNKKVNYN 569
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
MK KEP F +SYDA+GAYRQK I+ DSP WLRW +DQR++ SREVPIEV YESFGT
Sbjct: 570 ----MKDKEPHFSSSYDALGAYRQKLISLDSPLWLRWKLDQRVIGSREVPIEVQYESFGT 625
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
Y+EIY+HYLV+ + KKEIR IYIRTT+GHISFYREIEEAIQGFSR
Sbjct: 626 YHEIYDHYLVVGNRKKEIRSIYIRTTIGHISFYREIEEAIQGFSR 670
[96][TOP]
>UniRef100_A1E9I2 DNA-directed RNA polymerase subunit beta' n=1 Tax=Hordeum vulgare
RepID=RPOC1_HORVU
Length = 682
Score = 241 bits (615), Expect = 3e-62
Identities = 121/171 (70%), Positives = 138/171 (80%), Gaps = 2/171 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMS-- 174
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT G RRGI A RYN F RN N K++
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGKRRGICANRYNSF--RNYPNLKVNYN 569
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
NNSKY K KEP F +SYDA+GAYRQK I+ DSP WLRW +DQR++ SREVPIE+ YES
Sbjct: 570 NNNSKYRKDKEPHFSSSYDALGAYRQKLISLDSPLWLRWNLDQRVIGSREVPIEIQYESL 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
GTY+EIY HYL++ + KKEIR IYIRTT+GHISFYREIEEA+QGFS+ SY
Sbjct: 630 GTYHEIYAHYLIMGNRKKEIRSIYIRTTLGHISFYREIEEAVQGFSQAYSY 680
[97][TOP]
>UniRef100_Q8S1Q5 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q8S1Q5_ORYSJ
Length = 682
Score = 239 bits (609), Expect = 1e-61
Identities = 122/173 (70%), Positives = 138/173 (79%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C N N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCGNYPNQKVNYN 569
Query: 181 NS--KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
N+ KY K KE F +SYDA+GAYRQK+I DSP WLRW +DQR++ REVPIEV YES
Sbjct: 570 NNNPKYTKDKESLFSSSYDALGAYRQKQICLDSPLWLRWKLDQRVIGLREVPIEVQYESL 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTY EIY HYLV+ + KKEIR IYIRTT+GHISFYREIEEAIQGFS+ SY I
Sbjct: 630 GTYREIYAHYLVVGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSQAYSYTI 682
[98][TOP]
>UniRef100_Q6Z1U9 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
RepID=Q6Z1U9_ORYSJ
Length = 682
Score = 239 bits (609), Expect = 1e-61
Identities = 122/173 (70%), Positives = 138/173 (79%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C N N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCGNYPNQKVNYN 569
Query: 181 NS--KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
N+ KY K KE F +SYDA+GAYRQK+I DSP WLRW +DQR++ REVPIEV YES
Sbjct: 570 NNNPKYTKDKESLFSSSYDALGAYRQKQICLDSPLWLRWKLDQRVIGLREVPIEVQYESL 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTY EIY HYLV+ + KKEIR IYIRTT+GHISFYREIEEAIQGFS+ SY I
Sbjct: 630 GTYREIYAHYLVVGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSQAYSYTI 682
[99][TOP]
>UniRef100_B7T3U4 DNA-directed RNA polymerase n=1 Tax=Monsonia speciosa
RepID=B7T3U4_9ROSI
Length = 696
Score = 239 bits (609), Expect = 1e-61
Identities = 112/168 (66%), Positives = 140/168 (83%), Gaps = 2/168 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLL+P+MGDPI VPTQDMLIGLY+LTSGNRRG RY+P+N RNS+ +++ N
Sbjct: 526 LMFSHMNLLAPSMGDPICVPTQDMLIGLYILTSGNRRGPCVNRYSPWNRRNSQTDRIYDN 585
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+++Y +EP FCNSYDAIGAYRQK+I+ DSPFWLRW Q ++ SR VP+EVHYES GT
Sbjct: 586 SARYRNGREPLFCNSYDAIGAYRQKRIHLDSPFWLRWRPCQGLILSRGVPVEVHYESLGT 645
Query: 361 YYEIYEHYLVIRSIK--KEIRCIYIRTTVGHISFYREIEEAIQGFSRV 498
++EIY H+L+++SIK KE+RCIYIRTT+GHI YREIEEAIQGFS++
Sbjct: 646 HHEIYGHFLIVKSIKKQKEMRCIYIRTTLGHIFLYREIEEAIQGFSQI 693
[100][TOP]
>UniRef100_P0C506 DNA-directed RNA polymerase subunit beta' n=4 Tax=Oryza
RepID=RPOC1_ORYSJ
Length = 682
Score = 239 bits (609), Expect = 1e-61
Identities = 122/173 (70%), Positives = 138/173 (79%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C N N+K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCGNYPNQKVNYN 569
Query: 181 NS--KYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
N+ KY K KE F +SYDA+GAYRQK+I DSP WLRW +DQR++ REVPIEV YES
Sbjct: 570 NNNPKYTKDKESLFSSSYDALGAYRQKQICLDSPLWLRWKLDQRVIGLREVPIEVQYESL 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTY EIY HYLV+ + KKEIR IYIRTT+GHISFYREIEEAIQGFS+ SY I
Sbjct: 630 GTYREIYAHYLVVGNRKKEIRSIYIRTTLGHISFYREIEEAIQGFSQAYSYTI 682
[101][TOP]
>UniRef100_Q3BAQ1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Phalaenopsis
aphrodite subsp. formosana RepID=RPOC1_PHAAO
Length = 679
Score = 238 bits (607), Expect = 2e-61
Identities = 120/170 (70%), Positives = 136/170 (80%), Gaps = 2/170 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFN--CRNSKNEKMS 174
LMFS NLLSPA+GDP+SVPTQDMLIGLYVLT GN RGI A RYN N CRN K EK+
Sbjct: 512 LMFSHMNLLSPAIGDPVSVPTQDMLIGLYVLTIGNPRGICANRYNQSNSNCRNYKKEKVY 571
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
KN+ KY K E +F +SYDA+GAYRQK+I+ DSP WLRW +DQR++ SREVPIE+ YESF
Sbjct: 572 KNDFKYTK--ELYFSSSYDALGAYRQKRIHLDSPLWLRWRLDQRVVGSREVPIEIQYESF 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDS 504
G Y EIY+HY +I S+K EI CIYIRTT GHISFYREIEEAIQGF R S
Sbjct: 630 GNYNEIYKHYQIIGSVKIEICCIYIRTTAGHISFYREIEEAIQGFWRAYS 679
[102][TOP]
>UniRef100_A9QBS1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Passiflora biflora
RepID=A9QBS1_PASBI
Length = 679
Score = 238 bits (606), Expect = 3e-61
Identities = 116/168 (69%), Positives = 136/168 (80%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLTS N +GI A RYN N RNSKNE++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTSRNHQGICANRYNLANRRNSKNERIDSN 571
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
KY K EPFFCNSYDAI AYRQK+IN DSP WLRW +D+ ++SRE+PIE +YES GT
Sbjct: 572 RDKYTK--EPFFCNSYDAIVAYRQKRINLDSPLWLRWQLDRPFIASREIPIEGYYESLGT 629
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDS 504
Y+EIY YL++R++KK+ CIYIRTTVG+I FYR+IEEAIQGF +V S
Sbjct: 630 YHEIYADYLIVRNLKKQNLCIYIRTTVGNIFFYRQIEEAIQGFCQVSS 677
[103][TOP]
>UniRef100_B3TN43 DNA-directed RNA polymerase subunit beta' n=1 Tax=Brachypodium
distachyon RepID=RPOC1_BRADI
Length = 682
Score = 236 bits (602), Expect = 9e-61
Identities = 119/173 (68%), Positives = 137/173 (79%), Gaps = 2/173 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMS-- 174
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GN RGI A RYN +C N N+K++
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNPRGICANRYN--SCGNYPNQKVNYN 569
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
NNS Y + KEP F +SYDA+GAYRQK I+ DSP WLRW +DQR + SREVPIEV YES
Sbjct: 570 NNNSTYTRDKEPIFYSSYDALGAYRQKLISLDSPLWLRWKLDQRAIGSREVPIEVQYESL 629
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
GTY+EIY HYL++ + KKEI IYIRTT+GHISFYREIEEA+QGFS+ SY I
Sbjct: 630 GTYHEIYAHYLIVGNRKKEICSIYIRTTLGHISFYREIEEAVQGFSQAYSYTI 682
[104][TOP]
>UniRef100_A8Y9G1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Lolium perenne
RepID=RPOC1_LOLPR
Length = 676
Score = 236 bits (601), Expect = 1e-60
Identities = 119/171 (69%), Positives = 137/171 (80%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRGI A RYN +C N +K++ N
Sbjct: 512 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRGICANRYN--SCVNYPTKKVNYN 569
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
MK KEP F +SYDA+GAYRQK I+ DSP WLRW +DQR++ SREVPIEV YES GT
Sbjct: 570 ----MKDKEPHFSSSYDALGAYRQKLISLDSPLWLRWKLDQRVIGSREVPIEVQYESLGT 625
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYGI 513
Y+EIY HYL++ + KKEIR IYIRTT+GHISFYRE+EEAIQGFS+ SY I
Sbjct: 626 YHEIYAHYLIVGNRKKEIRSIYIRTTLGHISFYRELEEAIQGFSQAYSYTI 676
[105][TOP]
>UniRef100_A8W3B5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cuscuta exaltata
RepID=RPOC1_CUSEX
Length = 691
Score = 234 bits (596), Expect = 4e-60
Identities = 114/167 (68%), Positives = 132/167 (79%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTS RGI RY N R + + +
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSEKHRGICTNRYTNCNIRTLQTKSSDYS 578
Query: 181 NSKYMK--KKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
NSKY PFFCNSYDAIGAYRQK+IN +SP WLRW +D+R+++SRE PIEVHYES
Sbjct: 579 NSKYKNPYNNGPFFCNSYDAIGAYRQKRINLESPLWLRWRLDRRVITSRETPIEVHYESR 638
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GTY+EIY H+L++RS+KK+I IY+RTTVGHIS YREIEEAIQGFSR
Sbjct: 639 GTYFEIYGHFLIVRSLKKKILFIYLRTTVGHISLYREIEEAIQGFSR 685
[106][TOP]
>UniRef100_B7T2U0 DNA-directed RNA polymerase n=1 Tax=Erodium chrysanthum
RepID=B7T2U0_9ROSI
Length = 707
Score = 231 bits (588), Expect = 4e-59
Identities = 107/170 (62%), Positives = 135/170 (79%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLL+P++GDPI VPTQDMLIGLY+LTSGNRRG+ RYN +N R + E++
Sbjct: 537 LMFSHMNLLAPSIGDPICVPTQDMLIGLYILTSGNRRGLCVNRYNLWNHRKGQTERVGHK 596
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
++ K KEP F NSYDAIGAYRQK+I DSP WLRW +DQ ++ SR +P+EVHYES GT
Sbjct: 597 KARDRKGKEPLFYNSYDAIGAYRQKRIRLDSPLWLRWRLDQGLVVSRGLPVEVHYESSGT 656
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
+++IY H+L++RS+KK I C YIRTT+GH+ F REIEEAIQGFS++ SYG
Sbjct: 657 HHQIYGHFLIVRSLKKAILCRYIRTTLGHLFFSREIEEAIQGFSQISSYG 706
[107][TOP]
>UniRef100_A7M957 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cuscuta reflexa
RepID=RPOC1_CUSRE
Length = 691
Score = 229 bits (584), Expect = 1e-58
Identities = 113/167 (67%), Positives = 132/167 (79%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRN--SKNEKMS 174
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTS NRR I RY N + +K+ S
Sbjct: 519 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSDNRRDICTNRYTKCNIQTLQTKSSDSS 578
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
+ SK K PFFCNSYDAIGAYRQK+IN +SP WLRW +D+R+++S E PIEVHYES
Sbjct: 579 NSKSKNWYKNRPFFCNSYDAIGAYRQKQINLESPLWLRWRLDRRVITSSETPIEVHYESR 638
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GT+ EIY H+L++RS+KK+I IY+RTTVGHIS YREIEEAIQGFSR
Sbjct: 639 GTFSEIYGHFLIVRSLKKKILFIYLRTTVGHISLYREIEEAIQGFSR 685
[108][TOP]
>UniRef100_B7T485 DNA-directed RNA polymerase n=1 Tax=Pelargonium cotyledonis
RepID=B7T485_9ROSI
Length = 689
Score = 228 bits (582), Expect = 2e-58
Identities = 108/170 (63%), Positives = 133/170 (78%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLL PA+GDP+ +PTQDMLIGLY+LTSGNRRGI A RY+ +N R +NE++
Sbjct: 517 LMFSTMNLLGPAIGDPVCIPTQDMLIGLYMLTSGNRRGICANRYHLWNRRTYQNERIDDK 576
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K KE F NSYDAIGAYRQK+I+ DSPFWLRW +D ++ SR VP+EVHYES GT
Sbjct: 577 NYRYTKGKELLFLNSYDAIGAYRQKRIHLDSPFWLRWRLDGLLIVSRGVPVEVHYESLGT 636
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
++EIY H+L++RS+KKE CIYIRTTVGH+ YREIEEA Q S + + G
Sbjct: 637 HHEIYGHFLIVRSVKKEKGCIYIRTTVGHLVLYREIEEASQRISLISNQG 686
[109][TOP]
>UniRef100_Q9TJZ1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Arabidopsis thaliana
RepID=Q9TJZ1_ARATH
Length = 155
Score = 222 bits (566), Expect = 1e-56
Identities = 106/141 (75%), Positives = 120/141 (85%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTSG RRGI A RYNP N +N +NE++ +
Sbjct: 17 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYET 76
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N KY K EPFFCNSYDAIGAYRQKKIN DSP WLRW +DQR+++SREVPIEVHYESFG
Sbjct: 77 NYKYTK--EPFFCNSYDAIGAYRQKKINLDSPLWLRWQLDQRVIASREVPIEVHYESFGN 134
Query: 361 YYEIYEHYLVIRSIKKEIRCI 423
Y+EIY HYL++RS+KKE CI
Sbjct: 135 YHEIYAHYLIVRSVKKENFCI 155
[110][TOP]
>UniRef100_Q9TM48 DNA-directed RNA polymerase (Fragment) n=1 Tax=Allium cepa
RepID=Q9TM48_ALLCE
Length = 157
Score = 212 bits (540), Expect = 1e-53
Identities = 97/141 (68%), Positives = 118/141 (83%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVP+QDMLIGLYVLT GNRRGI RYNP+NC N +N+ + N
Sbjct: 17 LMFSHMNLLSPAIGDPISVPSQDMLIGLYVLTMGNRRGICENRYNPYNCANYQNKTVDNN 76
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y K+KEP+F +SY+A+GAYRQK+I DSPFWLRW +DQR++ +EVPIEV YESFGT
Sbjct: 77 NYEYTKEKEPYFGSSYNALGAYRQKRIKLDSPFWLRWRLDQRVIGLKEVPIEVQYESFGT 136
Query: 361 YYEIYEHYLVIRSIKKEIRCI 423
Y+EIY HYL++ S+KKEI CI
Sbjct: 137 YHEIYGHYLIVGSMKKEICCI 157
[111][TOP]
>UniRef100_Q49C96 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cuscuta europaea
RepID=Q49C96_CUSEU
Length = 468
Score = 203 bits (517), Expect = 6e-51
Identities = 98/148 (66%), Positives = 113/148 (76%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPISVPTQDM+IGLYVLT+ NRRGI R N RN + +
Sbjct: 321 LMFSHMNLLSPAIGDPISVPTQDMVIGLYVLTNENRRGICLNRATECNTRNFPSRSSDNH 380
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N Y K EPFFCNSYDAIGAYR+K+IN DSP WLRW +DQR ++SRE IE+HYES GT
Sbjct: 381 NYYYKYKNEPFFCNSYDAIGAYRKKQINLDSPLWLRWRLDQRAITSRETLIEIHYESQGT 440
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVG 444
YYEIY HYL++RSI+KE +YIRT VG
Sbjct: 441 YYEIYGHYLIVRSIRKETHFLYIRTPVG 468
[112][TOP]
>UniRef100_Q06FX0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Pelargonium x
hortorum RepID=RPOC1_PELHO
Length = 701
Score = 199 bits (507), Expect = 9e-50
Identities = 100/163 (61%), Positives = 120/163 (73%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSP GDPI VPTQDML GLY LT GNRRGI ATRYN +N RNS+NE++
Sbjct: 534 LMFSTQNLLSPGNGDPICVPTQDMLTGLYTLTLGNRRGICATRYNLWNRRNSQNERIDDK 593
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+ K KE FCN DAIGAYRQK+IN DSPFWL+ Q + S+E+P+EVHYES GT
Sbjct: 594 HYGSTKGKELLFCNPDDAIGAYRQKRINLDSPFWLKVTWGQHRIVSKELPVEVHYESLGT 653
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGF 489
++EIY H ++RS+K E IYIRTTVGH+ REIE+A++ F
Sbjct: 654 HHEIYGHCKIVRSVKTERHFIYIRTTVGHLFLDREIEDALKDF 696
[113][TOP]
>UniRef100_A0ZZ26 DNA-directed RNA polymerase subunit beta' n=1 Tax=Gossypium
barbadense RepID=RPOC1_GOSBA
Length = 694
Score = 120 bits (300), Expect(2) = 2e-48
Identities = 68/104 (65%), Positives = 76/104 (73%)
Frame = +2
Query: 212 FFAIPMMQLGLIGRKKSISIVLFGSDGQ*INALCLREKFLLKFTMNLLVPIMRFMNII** 391
FF I +M+L L+GRK+SI IVL S G NAL L+EK KFTMNL VPIMRFM+II
Sbjct: 580 FFLIHVMRLELMGRKESIQIVLCDSGGNQSNALLLQEKLPSKFTMNLRVPIMRFMDIIQQ 639
Query: 392 *EV*KKKFVVYTFEPLLVIFLFIEKSKKLYKVFLESIHMVSNQI 523
EV KKKF VYTFEPLLVIFLF EKSKKLYK F HM+ N +
Sbjct: 640 QEVQKKKFFVYTFEPLLVIFLFTEKSKKLYKGFFGPTHMIPNHM 683
Score = 96.7 bits (239), Expect(2) = 2e-48
Identities = 47/72 (65%), Positives = 56/72 (77%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NL SPA+GDPIS+ TQDMLIGLYVLTSGNRRGI A RYNP+N ++ +N++ N
Sbjct: 510 LMFSHMNLFSPAIGDPISILTQDMLIGLYVLTSGNRRGICANRYNPWNLKSYQNQRFDNN 569
Query: 181 NSKYMKKKEPFF 216
N Y +EPFF
Sbjct: 570 N--YKSTREPFF 579
[114][TOP]
>UniRef100_Q4FFY3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q4FFY3_GINBI
Length = 684
Score = 184 bits (467), Expect = 4e-45
Identities = 99/171 (57%), Positives = 118/171 (69%), Gaps = 2/171 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLL PA+GDPISVPTQDML+GLY+LT N +GI RY+P+N +
Sbjct: 515 LMFSHTNLLYPAIGDPISVPTQDMLLGLYILTVENNQGIYGNRYHPYN-----------S 563
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N K K+ F + DA+ AYRQK+I+ SP WLRW +D RI +S RE PIEV YES
Sbjct: 564 NKKIFYCKKLSFSSYDDALRAYRQKRIHLYSPLWLRWRVDLRITTSVNREAPIEVQYESL 623
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
GT+ EI+EHY +IRS+ EI IYIRTTVG I F REIEEAIQGFSR +
Sbjct: 624 GTFREIHEHYRIIRSMMGEILSIYIRTTVGRIRFNREIEEAIQGFSRASEH 674
[115][TOP]
>UniRef100_A9QB28 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas micronesica
RepID=A9QB28_9SPER
Length = 687
Score = 180 bits (456), Expect = 8e-44
Identities = 99/171 (57%), Positives = 118/171 (69%), Gaps = 2/171 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDML+GLY+LT GN +GI RY+P+ SK
Sbjct: 518 LMFSHTNLLSPAIGDPISVPTQDMLLGLYILTVGNNQGIYGNRYHPY---------YSKY 568
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N KK P F + DA+GA+ QK+I DSP WLRW + RI++S RE PIEV YES
Sbjct: 569 NIFSCKK--PSFYSYDDALGAHWQKRIELDSPLWLRWGVGLRIITSVDREAPIEVQYESL 626
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
G ++EIYEHY + ++ EI IYIRTTVG I F REIEEAIQGFSR +
Sbjct: 627 GIFHEIYEHYRIGKNEVGEILSIYIRTTVGRIRFDREIEEAIQGFSRASEH 677
[116][TOP]
>UniRef100_A6H5F8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cycas
taitungensis RepID=RPOC1_CYCTA
Length = 681
Score = 179 bits (453), Expect = 2e-43
Identities = 95/171 (55%), Positives = 116/171 (67%), Gaps = 2/171 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDML+GLY+LT GN +GI RY+P+ +
Sbjct: 512 LMFSHTNLLSPAIGDPISVPTQDMLLGLYILTVGNNQGIYGNRYHPYYSKY--------- 562
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
K K+P F + DA+GA+ QK+I DSP W RW + RI++S RE PIEV YES
Sbjct: 563 --KIFSCKKPSFYSYDDALGAHWQKRIELDSPLWFRWGVGLRIITSVDREAPIEVQYESL 620
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
G ++EIYEHY + ++ EI IYIRTTVG I F REIEEAIQGFSR +
Sbjct: 621 GIFHEIYEHYRIGKNEVGEILSIYIRTTVGRIRFDREIEEAIQGFSRASEH 671
[117][TOP]
>UniRef100_C3W0R3 DNA-directed RNA polymerase n=1 Tax=Cedrus deodara
RepID=C3W0R3_CEDDE
Length = 696
Score = 172 bits (436), Expect = 2e-41
Identities = 91/168 (54%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T GN +GI RY+P+N +
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYIATIGNNQGIYGNRYHPYN-----------S 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 576 EKKSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVKQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+R
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFAR 683
[118][TOP]
>UniRef100_C3VZB6 DNA-directed RNA polymerase n=1 Tax=Abies firma RepID=C3VZB6_ABIFI
Length = 696
Score = 172 bits (436), Expect = 2e-41
Identities = 90/168 (53%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+ NLLSPA+GDPIS+PTQDML+GLY+ T GN +GI RY+P++ N
Sbjct: 527 LMFSEKNLLSPAIGDPISIPTQDMLLGLYISTIGNNQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWP-IDQRIMSS--REVPIEVHYES 351
K +K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSRKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWEEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GT++EI+EHY + + + EI IYIRTTVG F RE+EEAIQGF+R
Sbjct: 636 LGTFHEIHEHYRIRKGRRGEILNIYIRTTVGRTRFNREMEEAIQGFAR 683
[119][TOP]
>UniRef100_B7ZIN7 DNA-directed RNA polymerase n=1 Tax=Keteleeria davidiana
RepID=B7ZIN7_KETDA
Length = 696
Score = 171 bits (432), Expect = 5e-41
Identities = 90/168 (53%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+ NLLSPA+GDPIS+PTQDML+GLY+ T GN +GI RY+P++ N
Sbjct: 527 LMFSEKNLLSPAIGDPISIPTQDMLLGLYISTVGNNKGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWEEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GT++EI+EHY + + + EI IYIRTTVG F RE+EEAIQGF+R
Sbjct: 636 LGTFHEIHEHYRIRKGRRGEILNIYIRTTVGRTRFNREMEEAIQGFAR 683
[120][TOP]
>UniRef100_C1IXE8 DNA-directed RNA polymerase n=1 Tax=Picea sitchensis
RepID=C1IXE8_PICSI
Length = 696
Score = 169 bits (429), Expect = 1e-40
Identities = 90/168 (53%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T GN +GI RY+P++ +
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVGNSQGIYGNRYHPYH-----------S 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 576 EKKSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+R
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFAR 683
[121][TOP]
>UniRef100_C3W1R9 DNA-directed RNA polymerase n=1 Tax=Larix occidentalis
RepID=C3W1R9_LAROX
Length = 696
Score = 167 bits (422), Expect = 7e-40
Identities = 89/168 (52%), Positives = 115/168 (68%), Gaps = 3/168 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T GN +GI RY+P++ +
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVGNNQGIYGNRYHPYH-----------S 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 576 EKKRFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GT +EI+EH+ + + EI IYIRTTVG F RE+EEAIQGF+R
Sbjct: 636 LGTLHEIHEHFRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFAR 683
[122][TOP]
>UniRef100_C3W2I0 DNA-directed RNA polymerase n=1 Tax=Pinus pinaster
RepID=C3W2I0_PINPS
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[123][TOP]
>UniRef100_C3W1T3 DNA-directed RNA polymerase n=1 Tax=Pinus merkusii
RepID=C3W1T3_9CONI
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[124][TOP]
>UniRef100_C3W124 DNA-directed RNA polymerase n=1 Tax=Pinus leiophylla var.
chihuahuana RepID=C3W124_PINLE
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KRFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[125][TOP]
>UniRef100_C3W0J9 DNA-directed RNA polymerase n=1 Tax=Pinus canariensis
RepID=C3W0J9_9CONI
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[126][TOP]
>UniRef100_C3W014 DNA-directed RNA polymerase n=1 Tax=Pinus attenuata
RepID=C3W014_PINAT
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KRFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[127][TOP]
>UniRef100_C3VYS9 DNA-directed RNA polymerase n=1 Tax=Pinus thunbergii
RepID=C3VYS9_PINTH
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[128][TOP]
>UniRef100_C3VYL0 DNA-directed RNA polymerase n=1 Tax=Pinus taeda RepID=C3VYL0_PINTA
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KRFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[129][TOP]
>UniRef100_C3VXU6 DNA-directed RNA polymerase n=1 Tax=Pinus resinosa
RepID=C3VXU6_PINRE
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[130][TOP]
>UniRef100_C3VXL1 DNA-directed RNA polymerase n=3 Tax=Pinus RepID=C3VXL1_PINPO
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KCFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[131][TOP]
>UniRef100_P52733 DNA-directed RNA polymerase subunit beta' n=1 Tax=Pinus thunbergii
RepID=RPOC1_PINTH
Length = 696
Score = 166 bits (420), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[132][TOP]
>UniRef100_C3VXW8 DNA-directed RNA polymerase n=1 Tax=Pinus rzedowskii
RepID=C3VXW8_PINRZ
Length = 696
Score = 166 bits (419), Expect = 1e-39
Identities = 89/167 (53%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVENSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGELDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[133][TOP]
>UniRef100_C1IXL0 DNA-directed RNA polymerase n=2 Tax=Pinus RepID=C1IXL0_PINCO
Length = 696
Score = 164 bits (416), Expect = 3e-39
Identities = 88/167 (52%), Positives = 113/167 (67%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSP +GDPIS+PTQDML+GLY+ T N +GI RY+P++ N
Sbjct: 527 LMFSETNLLSPTIGDPISIPTQDMLLGLYISTVQNSQGIYGNRYHPYHSEN--------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 578 --KRFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGEVDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[134][TOP]
>UniRef100_C3W073 DNA-directed RNA polymerase n=2 Tax=Strobus RepID=C3W073_9CONI
Length = 696
Score = 164 bits (415), Expect = 4e-39
Identities = 88/167 (52%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ +
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVENSQGIYGNRYHPYH-----------S 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 576 EKKSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGELDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[135][TOP]
>UniRef100_C3VZN7 DNA-directed RNA polymerase n=1 Tax=Pinus aristata
RepID=C3VZN7_9CONI
Length = 696
Score = 164 bits (415), Expect = 4e-39
Identities = 88/167 (52%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ +
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVENSQGIYGNRYHPYH-----------S 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 576 EKKSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGELDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[136][TOP]
>UniRef100_C1IXS8 DNA-directed RNA polymerase n=2 Tax=Strobus RepID=C1IXS8_PINGE
Length = 696
Score = 164 bits (415), Expect = 4e-39
Identities = 88/167 (52%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ +
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVENSQGIYGNRYHPYH-----------S 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 576 EKKSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGELDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[137][TOP]
>UniRef100_A4QM10 DNA-directed RNA polymerase n=1 Tax=Pinus koraiensis
RepID=A4QM10_PINKO
Length = 480
Score = 164 bits (415), Expect = 4e-39
Identities = 88/167 (52%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ +
Sbjct: 311 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVENSQGIYGNRYHPYH-----------S 359
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 360 EKKSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGELDLRIITSVNQEAPIEVQYES 419
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 420 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 466
[138][TOP]
>UniRef100_Q85WS8 DNA-directed RNA polymerase subunit beta' n=10 Tax=Strobus
RepID=RPOC1_PINKO
Length = 696
Score = 164 bits (415), Expect = 4e-39
Identities = 88/167 (52%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TNLLSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ +
Sbjct: 527 LMFSETNLLSPAIGDPISIPTQDMLLGLYISTVENSQGIYGNRYHPYH-----------S 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 576 EKKSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGELDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[139][TOP]
>UniRef100_C3TS83 DNA-directed RNA polymerase n=1 Tax=Pinus krempfii
RepID=C3TS83_PINKR
Length = 696
Score = 163 bits (413), Expect = 7e-39
Identities = 87/167 (52%), Positives = 114/167 (68%), Gaps = 3/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS+TN+LSPA+GDPIS+PTQDML+GLY+ T N +GI RY+P++ +
Sbjct: 527 LMFSETNILSPAIGDPISIPTQDMLLGLYISTVENSQGIYGNRYHPYH-----------S 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K K+P F + D + AYRQK+I+ SP WLRW +D RI++S +E PIEV YES
Sbjct: 576 EKKSFSCKKPSFYSYDDVLRAYRQKRIDLYSPLWLRWGELDLRIITSVNQEAPIEVQYES 635
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFS 492
GT++EI+EHY + + EI IYIRTTVG F RE+EEAIQGF+
Sbjct: 636 LGTFHEIHEHYRIRKGRMGEILNIYIRTTVGRTRFNREMEEAIQGFA 682
[140][TOP]
>UniRef100_B2Y1V6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Welwitschia
mirabilis RepID=RPOC1_WELMI
Length = 696
Score = 155 bits (393), Expect = 2e-36
Identities = 84/169 (49%), Positives = 109/169 (64%), Gaps = 3/169 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSP+ G PI++PTQDML+GLY+LT+ + I RY+P SK+
Sbjct: 529 LMFSHTNLLSPSSGSPITIPTQDMLLGLYILTADKNQDISEFRYHP-----------SKS 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPI-DQRIMSS--REVPIEVHYES 351
K KK P F N D AY+QK++ +SP WLRW + D I++S REVPIE+ +E
Sbjct: 578 KKKISSKKNPCFSNYDDVFIAYQQKRVQLNSPLWLRWRVADGGILTSVDREVPIEIQHEP 637
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRV 498
FGT EIYEHY + ++ +I IYIRTTVG I F REIE+A FS++
Sbjct: 638 FGTSQEIYEHYAIQKNRMGKISNIYIRTTVGRILFNREIEKAFLSFSKL 686
[141][TOP]
>UniRef100_A7KVM5 RNA polymerase beta subunit 1 (Fragment) n=1 Tax=Olea europaea
RepID=A7KVM5_OLEEU
Length = 94
Score = 152 bits (385), Expect = 1e-35
Identities = 70/90 (77%), Positives = 79/90 (87%)
Frame = +1
Query: 241 AYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGTYYEIYEHYLVIRSIKKEIRC 420
AYRQK+IN DSP WLRW +DQR+++SRE PIEVHYES GTYYEIY HYL++RSIKKEI
Sbjct: 1 AYRQKRINLDSPLWLRWRLDQRVIASRESPIEVHYESLGTYYEIYGHYLIVRSIKKEILF 60
Query: 421 IYIRTTVGHISFYREIEEAIQGFSRVDSYG 510
IYIRTTVGHIS YREIEEA+QGFS+ SYG
Sbjct: 61 IYIRTTVGHISLYREIEEAVQGFSQACSYG 90
[142][TOP]
>UniRef100_B9VH98 DNA-directed RNA polymerase n=1 Tax=Syntrichia ruralis
RepID=B9VH98_TORRU
Length = 679
Score = 152 bits (384), Expect = 2e-35
Identities = 79/171 (46%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA G+P+SVP+QDML+GLY+LT N +GI + +P+ + +KN
Sbjct: 509 LMFSHTNLLSPATGEPVSVPSQDMLLGLYILTIENHQGIYGNKNHPYKXKKTKN------ 562
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMS--SREVPIEVHYESF 354
+ K P+F + D I A + KKI SP WLRW ID RIM+ SRE PIE+ Y
Sbjct: 563 ----ILNKIPYFYSYDDVIKAQKHKKIKLHSPLWLRWSIDLRIMTSRSREKPIEIQYNIS 618
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
G++ +IYEHY ++ K++I +Y+ TTVG I F ++IEEA+QG + +
Sbjct: 619 GSFSKIYEHYQFKKNKKEKIISVYLYTTVGRIIFNQQIEEAVQGTLKASEF 669
[143][TOP]
>UniRef100_Q85CL6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Anthoceros
formosae RepID=RPOC1_ANTFO
Length = 681
Score = 152 bits (383), Expect = 2e-35
Identities = 86/172 (50%), Positives = 114/172 (66%), Gaps = 3/172 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSP G+P+SVP+QDML+G+YV T + RGI +Y+P++ RN KN
Sbjct: 512 LMFSHTNLLSPVTGNPVSVPSQDMLLGIYVSTIRSNRGIYQNQYHPYDYRN-------KN 564
Query: 181 NSKYMKKKEPFFCNSYDAI-GAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYES 351
S M F+ +SYD I A +QK+IN SP WLRW +D I++S REVPIE+ YES
Sbjct: 565 FSYKM-----FYFHSYDDILKAEKQKQINLHSPLWLRWQVDLHIVTSIDREVPIEIQYES 619
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
GT +IYE+Y ++ K++I +YI TT G I F ++IEEAIQGF V +
Sbjct: 620 LGTSSQIYENYQFRKNRKEKILSMYICTTAGRILFNQQIEEAIQGFFEVSQH 671
[144][TOP]
>UniRef100_B1VKH4 DNA-directed RNA polymerase subunit beta' n=2 Tax=Cryptomeria
japonica RepID=RPOC1_CRYJA
Length = 698
Score = 148 bits (373), Expect = 3e-34
Identities = 86/171 (50%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NL+SP +GDPI VPTQDML+GLY T +GI RY+P
Sbjct: 532 LMFSHLNLISPTIGDPICVPTQDMLLGLYRSTLQKNQGIYENRYHP-------------- 577
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW--PIDQRIMSS--REVPIEVHYE 348
NS K P F + DA+ AY QK+I+ DSP WLRW ID I++S RE+PIEV YE
Sbjct: 578 NSSKKKIVSPSFYSYDDALKAYEQKQIDLDSPLWLRWGREIDTSIINSVNRELPIEVQYE 637
Query: 349 SFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVD 501
GT+YEIY+H+ + + EI YIRTTVG I F REIEEAI+G D
Sbjct: 638 CLGTFYEIYDHFRIRKGRVGEILNKYIRTTVGRIRFNREIEEAIKGLWTYD 688
[145][TOP]
>UniRef100_A2T323 DNA-directed RNA polymerase subunit beta' n=1 Tax=Angiopteris
evecta RepID=RPOC1_ANGEV
Length = 687
Score = 144 bits (364), Expect = 4e-33
Identities = 79/163 (48%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA GDPI+VP+QDML+GLYVLT N +GI RY P NE+
Sbjct: 516 LMFSHTNLLSPATGDPIAVPSQDMLLGLYVLTIENSQGIYGNRYYP-------NERTKDP 568
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
S + + P+F N D + A Q++++ SP WLRW D RI++S RE+PIE+ YES
Sbjct: 569 ISSF--SRIPYFSNYDDILRAKEQERVDLHSPLWLRWQKDLRIITSLTRELPIEIQYESS 626
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQ 483
G ++IYE+Y + + ++I +YI TT G I F ++IEEAIQ
Sbjct: 627 GISFQIYENYQIRKGQSEDILSLYILTTAGRILFNQQIEEAIQ 669
[146][TOP]
>UniRef100_A9U640 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
patens RepID=A9U640_PHYPA
Length = 238
Score = 144 bits (362), Expect = 6e-33
Identities = 79/164 (48%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA GDP+SVP+QDML+GLY+LT N +GI +KN +N
Sbjct: 68 LMFSHTNLLSPATGDPVSVPSQDMLLGLYILTIKNHQGI----------YGNKNHPYKQN 117
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N+K K P+F + D I AY QKK+ S WL W R ++S RE PIEV Y S
Sbjct: 118 NNKIFLNKTPYFSSYDDVIKAYNQKKVRLHSALWLWWGSKLRTITSINREKPIEVQYNSS 177
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQG 486
G ++IYEHY + ++ ++ +YI TTVG I F ++IEEAIQG
Sbjct: 178 GISFKIYEHYQLKKNKNEKNFSVYICTTVGRIIFNQQIEEAIQG 221
[147][TOP]
>UniRef100_P60288 DNA-directed RNA polymerase subunit beta' n=1 Tax=Physcomitrella
patens RepID=RPOC1_PHYPA
Length = 679
Score = 144 bits (362), Expect = 6e-33
Identities = 79/164 (48%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA GDP+SVP+QDML+GLY+LT N +GI +KN +N
Sbjct: 509 LMFSHTNLLSPATGDPVSVPSQDMLLGLYILTIKNHQGI----------YGNKNHPYKQN 558
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N+K K P+F + D I AY QKK+ S WL W R ++S RE PIEV Y S
Sbjct: 559 NNKIFLNKTPYFSSYDDVIKAYNQKKVRLHSALWLWWGSKLRTITSINREKPIEVQYNSS 618
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQG 486
G ++IYEHY + ++ ++ +YI TTVG I F ++IEEAIQG
Sbjct: 619 GISFKIYEHYQLKKNKNEKNFSVYICTTVGRIIFNQQIEEAIQG 662
[148][TOP]
>UniRef100_Q9TJT6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba
RepID=Q9TJT6_GINBI
Length = 148
Score = 143 bits (361), Expect = 8e-33
Identities = 77/143 (53%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLL PA+GDPISVPTQDML+GLY+LT N +GI RY+P+N +
Sbjct: 17 LMFSHTNLLYPAIGDPISVPTQDMLLGLYILTVENNQGIYGNRYHPYN-----------S 65
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N K K+ F + DA+ AYR+K+I+ SP WLRW +D RI +S RE PIEV YES
Sbjct: 66 NKKIFYCKKLSFSSYDDALRAYREKRIHLYSPLWLRWRVDLRITTSVNREAPIEVQYESL 125
Query: 355 GTYYEIYEHYLVIRSIKKEIRCI 423
GT+ EI+EHY +IRS+ EI I
Sbjct: 126 GTFREIHEHYRIIRSMMGEILSI 148
[149][TOP]
>UniRef100_Q9TJU3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Cycas revoluta
RepID=Q9TJU3_CYCRE
Length = 148
Score = 140 bits (354), Expect = 5e-32
Identities = 77/143 (53%), Positives = 96/143 (67%), Gaps = 2/143 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSPA+GDPISVPTQDML+GLY+LT GN +GI RY+P+ SK
Sbjct: 17 LMFSHTNLLSPAIGDPISVPTQDMLLGLYILTVGNNQGIYGNRYHPY---------YSKY 67
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N K+P F + DA+GA+ QK+I DSP WLRW + RI++S RE PIEV YES
Sbjct: 68 N--IFSCKKPSFYSYDDALGAHWQKRIELDSPLWLRWGVGLRIITSVDREAPIEVQYESL 125
Query: 355 GTYYEIYEHYLVIRSIKKEIRCI 423
G ++EIYEHY + ++ EI I
Sbjct: 126 GIFHEIYEHYRIGKNEVGEILSI 148
[150][TOP]
>UniRef100_P06273 DNA-directed RNA polymerase subunit beta' n=1 Tax=Marchantia
polymorpha RepID=RPOC1_MARPO
Length = 684
Score = 138 bits (348), Expect = 3e-31
Identities = 76/164 (46%), Positives = 104/164 (63%), Gaps = 2/164 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM S NLLSPA G+PISVP+QDML+GLY+LT N +GI +YNP K
Sbjct: 512 LMLSHKNLLSPATGEPISVPSQDMLLGLYILTIENNQGIYGNKYNP----------SKKY 561
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMS--SREVPIEVHYESF 354
+SK + P+F + + A +QK+I S WLRW I+ RI++ ++E PIE+ Y+SF
Sbjct: 562 DSKKKFSQIPYFSSYDNVFRALQQKQIYLHSSLWLRWQINLRIITLLNQEGPIEIQYKSF 621
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQG 486
G ++IYEHY + ++ +EI YI TT G I F ++IEEAIQG
Sbjct: 622 GNSFQIYEHYQLRKNKNQEIISTYICTTAGRILFNQQIEEAIQG 665
[151][TOP]
>UniRef100_A6BM51 DNA-directed RNA polymerase subunit beta' n=1 Tax=Gnetum
parvifolium RepID=RPOC1_GNEPA
Length = 747
Score = 137 bits (344), Expect = 7e-31
Identities = 76/169 (44%), Positives = 104/169 (61%), Gaps = 3/169 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSP+ G PI+ PTQDML+GLY+LT+ R I + F CR S K
Sbjct: 525 LMFSHTNLLSPSNGSPITKPTQDMLLGLYILTTEKPRNI-----SQFRCRPSNPTK---- 575
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPI-DQRIMSS--REVPIEVHYES 351
K++ + FCN D AY++ +++ +P W RW + + I++S +EVPIE Y+S
Sbjct: 576 --KFLPEANLCFCNYDDVFIAYQKNRVSLKNPLWFRWKVVNGTILTSVDQEVPIEFQYQS 633
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRV 498
GT +IYEHY + R+ ++ IYIRTTVG I F REIE A FS++
Sbjct: 634 LGTSQQIYEHYTIQRARSGKVLTIYIRTTVGRIIFNREIENAFLAFSKL 682
[152][TOP]
>UniRef100_Q8WI25 DNA-directed RNA polymerase subunit beta' n=1 Tax=Psilotum nudum
RepID=RPOC1_PSINU
Length = 674
Score = 132 bits (333), Expect = 1e-29
Identities = 75/164 (45%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM S TNLLSPA GDPI+VPTQDML+GL++LT + +GI RY P++ RN +
Sbjct: 517 LMLSHTNLLSPATGDPIAVPTQDMLLGLHILTIEDSQGIYGVRYFPYSKRNCTS------ 570
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
K P+F + D + A Q++I+F SP WLRW R+++S RE PIE+ YES
Sbjct: 571 -----FFKIPYFNSYDDVLRAKEQRQIHFYSPIWLRWKGFLRVITSINREFPIEIQYESS 625
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQG 486
IYE+Y + + K +YIRTT G + F ++IEEAIQG
Sbjct: 626 NISVHIYENYQIRKDKKGNRLSLYIRTTAGRVLFNQQIEEAIQG 669
[153][TOP]
>UniRef100_C5HY45 DNA-directed RNA polymerase n=1 Tax=Alsophila spinulosa
RepID=C5HY45_9FILI
Length = 687
Score = 130 bits (328), Expect = 5e-29
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Frame = +1
Query: 4 MFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKNN 183
MFS TNLLSPA GDP+SVP+QDML+GLY+LT NR+GI R++ F +S N
Sbjct: 517 MFSHTNLLSPATGDPVSVPSQDMLLGLYILTIDNRQGIYGNRHSTF-IGSSPN------- 568
Query: 184 SKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESFG 357
P+F + YD + A K+I+F S WLRW ID + +SS RE+PIE YE G
Sbjct: 569 -------IPYFTSYYDILRAKELKQIDFYSSLWLRWGIDLQTISSRIRELPIESQYEPSG 621
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
T + Y++Y + + + I +YI TT G I F ++++EA+QG S+
Sbjct: 622 TSFHSYDNYQIRKCREGHILGMYILTTAGRILFNQQLKEAMQGISK 667
[154][TOP]
>UniRef100_B0YPL9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Aneura mirabilis
RepID=RPOC1_ANEMR
Length = 699
Score = 130 bits (328), Expect = 5e-29
Identities = 73/174 (41%), Positives = 103/174 (59%), Gaps = 6/174 (3%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM S N+LSPA G+P+ +P+QDML+GLY LT NRRGI +Y+ + N
Sbjct: 512 LMLSRRNVLSPATGEPLCIPSQDMLLGLYALTMENRRGIYGNKYS-----------LDSN 560
Query: 181 NSKYMKK----KEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVH 342
Y+K K P+F D A++Q++I+ S WLRW + R+++S RE PIE+
Sbjct: 561 KETYLKNFSFPKIPYFHGYEDVYKAHQQREIHSHSVLWLRWQTNFRMITSTPREEPIEIQ 620
Query: 343 YESFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDS 504
YE+ G Y IY HY + + ++EI IYI TTVG + F + I+EAIQG + S
Sbjct: 621 YETSGISYRIYNHYQLEINAQREIISIYICTTVGRVLFNQRIDEAIQGTCQASS 674
[155][TOP]
>UniRef100_B7ZIF2 DNA-directed RNA polymerase n=1 Tax=Ephedra equisetina
RepID=B7ZIF2_EPHEU
Length = 695
Score = 125 bits (315), Expect = 2e-27
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 3/169 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TN+LS + G PI++PTQDML+GLY+LT + I RY+PF +
Sbjct: 527 LMFSYTNILSTSHGSPITIPTQDMLLGLYILTVEKPQDIYEIRYHPFQSKEII------- 579
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIM---SSREVPIEVHYES 351
+ +KK +F + A+++K++ ++P WL+W + + ++REVPIE+ Y
Sbjct: 580 ---FFRKKNTYFLSFNHVFIAFQKKQVQLNNPLWLKWKVANGSILTPTAREVPIEIQYHP 636
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRV 498
G +IYEHY+ ++I CIYIRTTVG + F REI+ AI+ S++
Sbjct: 637 KGLSQQIYEHYVTQNDRIEQIICIYIRTTVGRVLFNREIKNAIKTTSKL 685
[156][TOP]
>UniRef100_Q5SCX9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Huperzia lucidula
RepID=RPOC1_HUPLU
Length = 676
Score = 125 bits (315), Expect = 2e-27
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM S TNLLSPA GDPI VP+QDML+GLY LT RGI RYN +S +
Sbjct: 520 LMLSQTNLLSPATGDPICVPSQDMLLGLYPLTIEVNRGIYGNRYN-----------LSPS 568
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQ--RIMSSR--EVPIEVHYE 348
++ P+F + DA+ A QK IN S WLRWP+ RI++S+ E PIE+ Y+
Sbjct: 569 -----LRQIPYFYSYDDALRAKSQKLINLHSFLWLRWPVSDNLRILNSKDQEEPIEIQYD 623
Query: 349 SFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
G + IYEH+ + + +++ IYI TT G F ++IE A+QGFS++ +
Sbjct: 624 PLGNSHRIYEHFQIRKDREEKKLSIYICTTAGRTIFDQQIEAALQGFSKITPF 676
[157][TOP]
>UniRef100_A7P7C3 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera
RepID=A7P7C3_VITVI
Length = 692
Score = 120 bits (302), Expect = 5e-26
Identities = 74/163 (45%), Positives = 85/163 (52%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA+GDPIS+PTQDMLIGLYVLTSGNR+GI
Sbjct: 225 LMFSHMNLLSPAIGDPISIPTQDMLIGLYVLTSGNRQGI--------------------- 263
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+ + KE Y+++G Y
Sbjct: 264 YQRLIASKEAPIEVHYESLGTY-------------------------------------- 285
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGF 489
EIY HYL++RS+KKEI CIYIRTTVGHIS YREIEEAIQGF
Sbjct: 286 -LEIYGHYLIVRSVKKEIPCIYIRTTVGHISLYREIEEAIQGF 327
[158][TOP]
>UniRef100_UPI0000191AF8 RNA polymerase beta'''' subunit n=1 Tax=Adiantum capillus-veneris
RepID=UPI0000191AF8
Length = 698
Score = 115 bits (288), Expect = 2e-24
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA GDP+SVP+QDML+GLY LT +R+GI R+ F ++++
Sbjct: 516 LMFSHLNLLSPATGDPVSVPSQDMLLGLYALTIESRQGIYRNRHLGF------IDRVNVY 569
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
++K + F + D + A ++++ S WLRW ID +I+SS RE+ E HYES
Sbjct: 570 STKLL-----HFSSYCDLLRAKESRQVDSHSLLWLRWKIDLQIISSKIRELSSESHYESS 624
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GT + YE+ + + I +Y+ TT G I F ++++EA+QG S+
Sbjct: 625 GTSFHFYENCRIRKCRDGSISSMYVLTTAGRILFNQQLKEAMQGVSK 671
[159][TOP]
>UniRef100_Q85FM8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Adiantum
capillus-veneris RepID=RPOC1_ADICA
Length = 694
Score = 115 bits (288), Expect = 2e-24
Identities = 67/167 (40%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS NLLSPA GDP+SVP+QDML+GLY LT +R+GI R+ F ++++
Sbjct: 512 LMFSHLNLLSPATGDPVSVPSQDMLLGLYALTIESRQGIYRNRHLGF------IDRVNVY 565
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
++K + F + D + A ++++ S WLRW ID +I+SS RE+ E HYES
Sbjct: 566 STKLL-----HFSSYCDLLRAKESRQVDSHSLLWLRWKIDLQIISSKIRELSSESHYESS 620
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSR 495
GT + YE+ + + I +Y+ TT G I F ++++EA+QG S+
Sbjct: 621 GTSFHFYENCRIRKCRDGSISSMYVLTTAGRILFNQQLKEAMQGVSK 667
[160][TOP]
>UniRef100_Q8MA11 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chaetosphaeridium
globosum RepID=RPOC1_CHAGL
Length = 661
Score = 112 bits (281), Expect = 1e-23
Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM +++NLLSPA G+PI+VP+QDML+GLYVLT ++GI
Sbjct: 512 LMLANSNLLSPANGEPITVPSQDMLLGLYVLTMSCKQGIYI------------------Y 553
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSS--REVPIEVHYESF 354
N + +KKK P+FCN D I AY +K+IN P WL+W + R SS ++ E+ ES
Sbjct: 554 NEQKLKKKIPYFCNYIDVITAYEKKQINLHDPIWLKWYGNLRGTSSTKKQKLFEIQCESR 613
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRV 498
GT +I+E++ +I+ IY+ TT G I F + +E++IQ R+
Sbjct: 614 GTRRKIFENWHFCENIRNRKFTIYLFTTPGRIIFNQLLEQSIQATVRI 661
[161][TOP]
>UniRef100_Q9TJT4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Gnetum gnemon
RepID=Q9TJT4_GNEGN
Length = 149
Score = 103 bits (258), Expect = 7e-21
Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LMFS TNLLSP+ G PI+ PTQDML+GLY+LT+ R I + F CR S K
Sbjct: 17 LMFSHTNLLSPSNGSPITKPTQDMLLGLYILTTEKPRNI-----SQFRCRPSNPTK---- 67
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW-PIDQRIMSS--REVPIEVHYES 351
K++ + FCN D AY++ +++ + W RW ++ I++S +EVPIE Y+S
Sbjct: 68 --KFLPEVNLCFCNYDDVFIAYQKNRVSLKNSLWFRWNVVNGTILTSVDQEVPIEFQYQS 125
Query: 352 FGTYYEIYEHYLVIRS 399
GT +IYEHY + R+
Sbjct: 126 LGTSQQIYEHYTIQRA 141
[162][TOP]
>UniRef100_A7R9B8 Chromosome undetermined scaffold_3619, whole genome shotgun
sequence (Fragment) n=1 Tax=Vitis vinifera
RepID=A7R9B8_VITVI
Length = 56
Score = 93.2 bits (230), Expect = 1e-17
Identities = 43/54 (79%), Positives = 47/54 (87%)
Frame = +1
Query: 346 ESFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVDSY 507
ES GTY+EIY HYL++RS+KKEI CIYIRTTVGHIS YREIEEAIQGF R SY
Sbjct: 1 ESLGTYHEIYGHYLIVRSVKKEIPCIYIRTTVGHISLYREIEEAIQGFCRACSY 54
[163][TOP]
>UniRef100_Q32RY3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Staurastrum
punctulatum RepID=RPOC1_STAPU
Length = 834
Score = 93.2 bits (230), Expect = 1e-17
Identities = 68/198 (34%), Positives = 95/198 (47%), Gaps = 37/198 (18%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPF-----------NC 147
LM+S +NLLSPA G ++VP+QDML+GLYVLT GI +R F
Sbjct: 629 LMWSPSNLLSPATGRAVAVPSQDMLLGLYVLTLEGSVGIYGSRQRSFVSSSLLFTKNHEI 688
Query: 148 RNSKNE-------------KMSK--NNSKYMK-----------KKEPFFCNSYDAIGAYR 249
+ SK E K SK NSKY K P F + D I +
Sbjct: 689 KESKEEDSQSKQDFIRSLDKKSKPIKNSKYSLYPKFIENKSSFHKFPIFYDYDDVIISIH 748
Query: 250 QKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGTYYEIYEHYLVIRSIKKEIRCIYI 429
Q +N S WLRW ++SSR+ PIE ++S G IY++ + ++ K YI
Sbjct: 749 QGHLNLFSFLWLRWEAKYPVISSRKGPIEYQFDSSGNSINIYDNSYIKKNRKGNSFSKYI 808
Query: 430 RTTVGHISFYREIEEAIQ 483
TT G + F ++I+++IQ
Sbjct: 809 LTTAGRVLFNQQIQQSIQ 826
[164][TOP]
>UniRef100_Q32RG1 DNA-directed RNA polymerase subunit beta' n=1 Tax=Zygnema
circumcarinatum RepID=RPOC1_ZYGCR
Length = 715
Score = 91.3 bits (225), Expect = 5e-17
Identities = 64/166 (38%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEK--MS 174
LM NLLSP GD I VPTQDML+GLY LT G GI Y+ N +++
Sbjct: 543 LMSPYFNLLSPGTGDAIVVPTQDMLLGLYALTLGATLGI----YSNINTYKYQSDVSFTQ 598
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIM--SSREVPIEVHYE 348
K +SK + F N DA+ AY Q I D P WL + +M S + P+E Y+
Sbjct: 599 KTDSKIIT-----FSNFSDALTAYHQGIITSDLPIWLYCRPEIAVMNNSQGDCPVEAQYQ 653
Query: 349 SFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQG 486
G Y +YEH + + YIRTT G ++IE+AIQG
Sbjct: 654 PKGIYLNVYEHSQIRTDKLGKTVQKYIRTTAGRAVLNQQIEQAIQG 699
[165][TOP]
>UniRef100_C7BEC4 DNA-directed RNA polymerase n=1 Tax=Oocystis solitaria
RepID=C7BEC4_9CHLO
Length = 706
Score = 90.9 bits (224), Expect = 6e-17
Identities = 54/158 (34%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM+S NLLSPA G P+ +P+QDM++G Y LT
Sbjct: 570 LMWSRNNLLSPATGQPLILPSQDMILGCYFLT---------------------------- 601
Query: 181 NSKYMKKKE--PFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
+K +KKK+ F N + I AY Q KIN D P W+RW + M+ +E P+E+
Sbjct: 602 -TKQLKKKKILSHFININECIKAYDQNKINIDFPVWIRWNSNFETMNEQEKPLEIQVSRL 660
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREI 468
G++ EIY Y S + + YIRTT G + F + +
Sbjct: 661 GSFIEIYSQYKRDFSFSFKEKYKYIRTTTGRVLFNKTL 698
[166][TOP]
>UniRef100_B9S1B4 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
RepID=B9S1B4_RICCO
Length = 349
Score = 85.1 bits (209), Expect = 3e-15
Identities = 35/51 (68%), Positives = 42/51 (82%)
Frame = +1
Query: 253 KKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGTYYEIYEHYLVIRSIK 405
K+IN DSP WLRW +DQR ++SRE P+EVHYES GTY+EIYEHYL+I K
Sbjct: 129 KRINLDSPLWLRWQLDQRAIASREAPVEVHYESLGTYHEIYEHYLIIEKRK 179
[167][TOP]
>UniRef100_Q2WGI4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella uncinata
RepID=Q2WGI4_SELUN
Length = 697
Score = 84.3 bits (207), Expect = 6e-15
Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Frame = +1
Query: 10 SDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKNNSK 189
S N SPA GDP+S P QDM G +V T GN +GI RY+ ++CR + +
Sbjct: 518 SHANPPSPATGDPVSAPNQDMPPGPHVPTIGNGQGIWGNRYH-YSCRGGRYNPFVPYET- 575
Query: 190 YMKKKEPFFCNSYDAIGAYRQKK---INFDSPFWLRWPI-DQRIMSS--REVPIEVHYES 351
+ P+F N +DA+ +K ++ P WLRWP D R+M+S E P+EV YE
Sbjct: 576 -LLHGVPYF-NDHDALPVTESRKGSELHLQRPLWLRWPTDDSRVMNSIDWEEPLEVQYEP 633
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQG 486
GT ++ +E+ R + ++IRTT G I + +E + +G
Sbjct: 634 TGTCHQTHENSQTGRRNGNTLG-VHIRTTAGRIISNQRMEPSSRG 677
[168][TOP]
>UniRef100_Q1ACN5 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chara vulgaris
RepID=RPOC1_CHAVU
Length = 666
Score = 84.3 bits (207), Expect = 6e-15
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 1/168 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
+M S+ NLLSPA GDPI++P+QDML+GLY+LT + + N S+ + + K+
Sbjct: 512 IMISNRNLLSPATGDPITLPSQDMLLGLYMLTLEDLQR---------NFSFSQKQCLKKH 562
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMS-SREVPIEVHYESFG 357
+ + P F + D I A ++KI+ + WL+ + I S + PIE+ Y S G
Sbjct: 563 TN---FNQMPSFISFEDVIKARVERKIHLYTSLWLKLKNIEAITSYLYQSPIEIQYNSRG 619
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQGFSRVD 501
T YE + + +I+ E IY TTVG + F ++ A+Q R+D
Sbjct: 620 TRSITYEDWNICENIEGEKISIYAYTTVGRVIFNQQFRSALQ--KRID 665
[169][TOP]
>UniRef100_C7B2E4 DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii
RepID=C7B2E4_9TRAC
Length = 696
Score = 83.2 bits (204), Expect = 1e-14
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Frame = +1
Query: 10 SDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKNNSK 189
S TN LSPA GDP+S P QDM G ++ T G+ +GI RY +CR + +
Sbjct: 517 SHTNPLSPASGDPVSAPNQDMPPGPHISTIGHGQGIRGNRYYR-SCRGNGYNPFVPYETL 575
Query: 190 YMKKKEPFFCNSYDAIGAYRQKKI---NFDSPFWLRWPI-DQRIMS--SREVPIEVHYE- 348
+ + N +DA+ + + + SP WLRWP D RIM+ RE P EV YE
Sbjct: 576 F---HGIHYFNGHDALPITELQTVIDLHLQSPLWLRWPTDDSRIMNPIDREEPFEVQYEP 632
Query: 349 SFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQG 486
+ GT ++I+E+Y +Y+RTT G I + +E +++G
Sbjct: 633 TTGTCHQIHENYQTRGG--GHTLSVYVRTTAGRIISNQRMESSLRG 676
[170][TOP]
>UniRef100_B2X2C0 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas moewusii
RepID=B2X2C0_CHLMO
Length = 2262
Score = 82.4 bits (202), Expect = 2e-14
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 2/163 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSG--NRRGIGATRYNPFNCRNSKNEKMS 174
LM S N+LSPA GDP+++P+QDML+G Y LT NR+ + N++ +K+S
Sbjct: 2121 LMLSRNNILSPATGDPLAIPSQDMLLGCYYLTINLLNRKTL-----------NTQEKKLS 2169
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
+ +F N + AY K ++ S WL+W S +E PIE+ +S+
Sbjct: 2170 GS----------YFSNMETVLKAYELKALDLHSNIWLKWNHSIENGSDQEEPIEIRIDSY 2219
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQ 483
G EIY+ + K+ +I TT G I F + I A++
Sbjct: 2220 GNRKEIYKKSQKTFNSKEHFWTHFILTTPGKILFNKLIHNALR 2262
[171][TOP]
>UniRef100_Q9MUS6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Mesostigma viride
RepID=RPOC1_MESVI
Length = 668
Score = 76.6 bits (187), Expect = 1e-12
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + +NLLSPA G PI P+QDM++G Y LT+ + R G
Sbjct: 528 LMLASSNLLSPATGLPIISPSQDMVLGCYYLTTEDIRLRGT------------------- 568
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWP--IDQRIMSSREVPIEVHYESF 354
K +F + I AY QKKIN + W+R+ ID + + ++ PIE+ +S
Sbjct: 569 -------KSHYFSSLEQVIMAYDQKKINLHTIVWVRFSGIIDSKYI--KQNPIEIRVDSL 619
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
G IY++Y + + K + YIRTT G I F + I+ ++
Sbjct: 620 GFVSYIYKNYQMRKDFKNNLISQYIRTTPGRILFNQVIQNSL 661
[172][TOP]
>UniRef100_B4B4N5 DNA-directed RNA polymerase n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4B4N5_9CHRO
Length = 625
Score = 71.6 bits (174), Expect = 4e-11
Identities = 47/160 (29%), Positives = 73/160 (45%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+
Sbjct: 490 LMLACHNILSPATGRPIVAPSQDMVLGCYYLTA--------------------------E 523
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K K E +F + DA+ AY QK ++ + W+R + P++ G+
Sbjct: 524 NPKAQKGAESYFSDLEDALMAYEQKMVDLHAYVWVRCQEQVVTDQPDDEPVKTETLEDGS 583
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
++Y H V + EI +IRTTVG I + + I++A+
Sbjct: 584 IVKLYRHRKVRETADGEILSQFIRTTVGRIIYNKTIKDAL 623
[173][TOP]
>UniRef100_B7T1S5 DNA-directed RNA polymerase n=1 Tax=Vaucheria litorea
RepID=B7T1S5_VAULI
Length = 611
Score = 71.6 bits (174), Expect = 4e-11
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGI-GATRYNPFNCRNSKNEKMSK 177
LMF+ N LSPA GDPI PTQDML+G Y LT NR + GA Y
Sbjct: 477 LMFAPNNFLSPATGDPIIQPTQDMLLGCYYLTVDNRPNLKGANHY--------------- 521
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
F N + + AY Q +++ S W+R + ++ ++ I+ Y +
Sbjct: 522 ------------FSNFDEVLCAYEQNQVDIHSSIWVRCLNNYNLIDKSQL-IKTVYLNDE 568
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+ +IY + + S +KE YIRTT G I F + + +
Sbjct: 569 STLKIYNNLQIRESKEKECIVRYIRTTPGRIIFNKNLNSLL 609
[174][TOP]
>UniRef100_B7KK78 DNA-directed RNA polymerase subunit gamma n=1 Tax=Cyanothece sp.
PCC 7424 RepID=RPOC1_CYAP7
Length = 625
Score = 70.9 bits (172), Expect = 6e-11
Identities = 44/160 (27%), Positives = 72/160 (45%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LTS
Sbjct: 490 LMLACHNILSPATGRPIVAPSQDMVLGCYYLTS--------------------------E 523
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K K E ++ + DA+ AY Q ++ + W+R ++ + PI+ GT
Sbjct: 524 NPKAQKGAESYYSDLEDALMAYEQGLVDLHAYVWVRCDLEVVTEQPDDKPIKTETSEDGT 583
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+ Y H V + ++ C +I TTVG I + + +++ +
Sbjct: 584 VTKYYRHRKVRETADGKLICQFIHTTVGRIIYNKTVQDTL 623
[175][TOP]
>UniRef100_B2XT79 DNA-directed RNA polymerase n=2 Tax=Heterosigma akashiwo
RepID=B2XT79_HETA2
Length = 626
Score = 70.1 bits (170), Expect = 1e-10
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGI-GATRYNPFNCRNSKNEKMSK 177
L+F+ N LSPA G P+ +P+QDML+G Y LT+ N +G+ GA Y
Sbjct: 492 LLFAPCNFLSPATGSPVLLPSQDMLLGCYYLTTNNLKGLKGANHY--------------- 536
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
F N DA+ AY K ++ + W+R+ + P++ ++
Sbjct: 537 ------------FSNFDDALLAYENKLVDLHALIWIRY---GGYLEDTSEPLKTIQKNDK 581
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
T IY+ + +S EI YIRTT G + F + I +A+
Sbjct: 582 TKLIIYKDKQIRQSENGEIITTYIRTTPGRLIFNKVINQAL 622
[176][TOP]
>UniRef100_Q19V99 DNA-directed RNA polymerase subunit beta' n=1 Tax=Chlorokybus
atmophyticus RepID=RPOC1_CHLAT
Length = 717
Score = 69.3 bits (168), Expect = 2e-10
Identities = 42/128 (32%), Positives = 60/128 (46%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + +NLLSPA G PI P+QDM++G Y LT+
Sbjct: 504 LMLASSNLLSPATGQPIIAPSQDMILGCYYLTT--------------------------E 537
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K+ ++ +F DA+ AY QK+I+ S W+R+ S++E PIE+ E G
Sbjct: 538 NPKFQIERGHYFSTLKDAVMAYEQKRIHLHSYIWVRFQGRIDTKSTQEEPIEIRIEESGF 597
Query: 361 YYEIYEHY 384
IY Y
Sbjct: 598 CSTIYRRY 605
[177][TOP]
>UniRef100_UPI0000DD8F93 Os04g0238800 n=1 Tax=Oryza sativa Japonica Group
RepID=UPI0000DD8F93
Length = 615
Score = 68.2 bits (165), Expect = 4e-10
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG 114
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRG
Sbjct: 64 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRG 101
[178][TOP]
>UniRef100_UPI00005E1D74 Os10g0355000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI00005E1D74
Length = 1427
Score = 68.2 bits (165), Expect = 4e-10
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG 114
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRG
Sbjct: 973 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRG 1010
[179][TOP]
>UniRef100_Q7DNA6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=Q7DNA6_ORYSJ
Length = 596
Score = 68.2 bits (165), Expect = 4e-10
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG 114
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRG
Sbjct: 64 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRG 101
[180][TOP]
>UniRef100_Q339H4 DNA-directed RNA polymerase beta chain, putative n=1 Tax=Oryza sativa
Japonica Group RepID=Q339H4_ORYSJ
Length = 1382
Score = 68.2 bits (165), Expect = 4e-10
Identities = 33/38 (86%), Positives = 34/38 (89%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG 114
LMFS NLLSPA+GDPI VPTQDMLIGLYVLT GNRRG
Sbjct: 973 LMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGNRRG 1010
[181][TOP]
>UniRef100_B0JSN9 DNA-directed RNA polymerase subunit gamma n=1 Tax=Microcystis
aeruginosa NIES-843 RepID=RPOC1_MICAN
Length = 626
Score = 68.2 bits (165), Expect = 4e-10
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT ++N K K
Sbjct: 490 LMLACHNILSPATGRPIVAPSQDMVLGCYYLT-------------------AENPKAQKG 530
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSR--EVPIEVHYESF 354
+Y F + DAI A+ Q ++ + WLR P+ +++ +++ E +E
Sbjct: 531 GGRY-------FASMDDAIRAFDQGLVDLHASVWLRLPVGEKVKTNKPDEEVLETETLPD 583
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
G+ ++ Y R EI Y+RTTVG I + + I EA+
Sbjct: 584 GSIWKYYRERKT-REKDGEIISQYVRTTVGRIIYNKTILEAL 624
[182][TOP]
>UniRef100_Q1XDN6 DNA-directed RNA polymerase subunit beta' n=1 Tax=Porphyra
yezoensis RepID=RPOC1_PORYE
Length = 629
Score = 67.4 bits (163), Expect = 7e-10
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N LSPA G PI +P+QDM++G Y LT+ N
Sbjct: 495 LMLAPHNFLSPATGQPIIMPSQDMVLGCYYLTA--------------------------N 528
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSR-EVPIEVHYESFG 357
N + +F + D + AY QKKI+ S W R+ D + + PI++ S
Sbjct: 529 NPSQQQGSNQYFASLEDVVMAYEQKKIDLHSYIWARF--DGLVDGDQPHDPIKIEKHSDN 586
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+ + + ++++ + + YIRTT G I F + I+E++
Sbjct: 587 STTKFFNNHIIKEDAENQRIVQYIRTTAGRIIFNKIIQESL 627
[183][TOP]
>UniRef100_B1X3M9 DNA-directed RNA polymerase subunit beta' n=1 Tax=Paulinella
chromatophora RepID=RPOC1_PAUCH
Length = 643
Score = 67.4 bits (163), Expect = 7e-10
Identities = 44/160 (27%), Positives = 72/160 (45%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G+P+ P+QDM++G+Y LTS P + + E+
Sbjct: 503 LMLASANILSPATGEPVITPSQDMVLGIYYLTSS----------KPAQTQPAFGERGLT- 551
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
F N+YD I AY +I + W+R+ + E+PI++ G+
Sbjct: 552 -----------FANTYDVISAYDNDRIGLHTWIWVRFSGEVEDDDESEMPIKIETAEDGS 600
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
Y E++ + K + Y+ TTVG + I +I
Sbjct: 601 YTELWRYRRERFDKDKALVSRYLLTTVGRVIMNTSIMNSI 640
[184][TOP]
>UniRef100_A8YNN2 DNA-directed RNA polymerase n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YNN2_MICAE
Length = 626
Score = 67.0 bits (162), Expect = 9e-10
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT ++N K K
Sbjct: 490 LMLACHNILSPATGRPIVAPSQDMVLGCYYLT-------------------AENPKAQKG 530
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSR--EVPIEVHYESF 354
+Y F + DAI A+ Q ++ + WLR P+ +++ +++ E +E
Sbjct: 531 GGRY-------FASMDDAIHAFDQGLVDLHASVWLRLPVGEKVKTNKPDEEVLETETLPD 583
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
G+ ++ Y R +I Y+RTTVG I + + I EA+
Sbjct: 584 GSIWKYYRERKT-REKDGQIISQYVRTTVGRIIYNKTILEAL 624
[185][TOP]
>UniRef100_B9TPV7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Ricinus communis
RepID=B9TPV7_RICCO
Length = 178
Score = 67.0 bits (162), Expect = 9e-10
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRR 111
LMFS NLLSPA+GDPISVPTQDMLIGLYVLTS NRR
Sbjct: 142 LMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSRNRR 178
[186][TOP]
>UniRef100_P42080 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cyanophora
paradoxa RepID=RPOC1_CYAPA
Length = 636
Score = 67.0 bits (162), Expect = 9e-10
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + NLLSPA G PI P+QDM++G Y LT +
Sbjct: 494 LMLASNNLLSPATGQPIVTPSQDMVLGCYYLT--------------------------VD 527
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPI-----------DQRIMSSREV 327
N K K K +F NS D + AY Q++I+ S W+R+ Q+++ RE+
Sbjct: 528 NLKNQKGKGSYFINSEDVLIAYEQQRIDLHSYIWVRFDTFSFDDILEEKNIQQVLYKREI 587
Query: 328 PIEVHYESFGTYYEIYEHYLVIRSIKKEIRCI--YIRTTVGHISFYREIEEAI 480
+ FGT ++Y + K+ C+ YI TT G + F + +++A+
Sbjct: 588 ------DEFGTVIKVYNTRRIRED--KDGFCLTQYIITTAGRVLFNKVVQKAL 632
[187][TOP]
>UniRef100_B4VKP9 DNA-directed RNA polymerase n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4VKP9_9CYAN
Length = 627
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGI-GATRYNPFNCRNSKNEKMSK 177
LM + N+LSPA G PI P+QDM++G Y LT+ N GA RY
Sbjct: 490 LMLASNNILSPATGRPIVAPSQDMVLGCYYLTAENPHATKGADRY--------------- 534
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWP-IDQRIMSSREVPIEVHYESF 354
F + DAI A+ QK++ + W+R+ Q S E I S
Sbjct: 535 ------------FASLDDAIRAFEQKQVELHAYVWVRFDGTVQNGKSDDEQVISSETSSD 582
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
G ++Y+ V + E+ Y+RTT G I + + I++A+
Sbjct: 583 GMVTKVYKDRRVRETADGELISQYVRTTPGRIIYNKAIQDAL 624
[188][TOP]
>UniRef100_Q6B8R7 DNA-directed RNA polymerase subunit beta' n=1 Tax=Gracilaria
tenuistipitata var. liui RepID=RPOC1_GRATL
Length = 628
Score = 65.5 bits (158), Expect = 3e-09
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N LSPA G PI +P+QDM++G Y LT+ YNP +S +
Sbjct: 495 LMLAPHNFLSPATGQPILMPSQDMVLGCYYLTT----------YNPAAISDSSH------ 538
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWP--IDQRIMSSREVPIEVHYESF 354
+F N DA+ AY+Q I S W+R+ ++ SS ++ I
Sbjct: 539 ----------YFSNLDDALMAYQQNNITLHSLVWVRFSGLVND---SSNQMVISSKLNID 585
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
GT +I+ +V ++ YIRTT G I F + I E++
Sbjct: 586 GTITKIFSDRIVKYDNDGQMVVQYIRTTAGRILFNKAIRESL 627
[189][TOP]
>UniRef100_B4WNB2 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WNB2_9SYNE
Length = 624
Score = 65.1 bits (157), Expect = 4e-09
Identities = 47/161 (29%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGN-RRGIGATRYNPFNCRNSKNEKMSK 177
LM + N+LSPA G PI P+QDM++G Y LT+ N + GA RY
Sbjct: 489 LMLASNNVLSPATGRPIITPSQDMVLGCYYLTADNPSKQKGAGRY--------------- 533
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
F N DAI AY Q ++ + WLR+ D PI+V + G
Sbjct: 534 ------------FANMEDAIAAYEQGNVDLHAKVWLRFVGDVETAEEDNEPIKVEEDGNG 581
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+ Y+ V + Y+ TT G I + + A+
Sbjct: 582 GSTKTYKFRRVREDESGNVISQYVETTPGRIIYNHAVLGAL 622
[190][TOP]
>UniRef100_P51251 DNA-directed RNA polymerase subunit beta' n=1 Tax=Porphyra purpurea
RepID=RPOC1_PORPU
Length = 629
Score = 65.1 bits (157), Expect = 4e-09
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N LSPA G PI +P+QDM++G Y LT+ N
Sbjct: 495 LMLAPHNFLSPATGQPIIMPSQDMVLGCYYLTA--------------------------N 528
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREV--PIEVHYESF 354
N + +F + D + AY +KK++ + W R+ ++ S +V PI++
Sbjct: 529 NPSQQRGASQYFASLEDVVIAYEKKKVDLHAYIWARF---DGVIDSDQVKFPIKIETHHD 585
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+ + ++++++ + + YIRTT G I F + I+E++
Sbjct: 586 NSVTKFFDNHIIKEDAEHQRIVQYIRTTPGRIIFNKIIQESL 627
[191][TOP]
>UniRef100_D0FXV5 Beta' subunit of RNA polymerase n=1 Tax=Dunaliella salina
RepID=D0FXV5_DUNSA
Length = 1803
Score = 64.7 bits (156), Expect = 5e-09
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVL-TSGNRRGIGATRYNPFNCRNSKNEKMSK 177
LM S N+LSPA GDP+S+P+QDM++G Y L T+ N+ + R + F
Sbjct: 1667 LMLSRNNMLSPATGDPLSIPSQDMVLGCYYLTTNSNKATLSLLRGSGF------------ 1714
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
FF + + Y ++I+ + W++W + +E P+E+ + G
Sbjct: 1715 -----------FFTDLQKVLYQYDLQQIDLHALVWVKWSGLIENGNDQEEPLEIRLSTTG 1763
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFY 459
+ E+ +Y+ ++ Y+ TT G I FY
Sbjct: 1764 HWQELSYNYIRHFDSSSQLIHQYMSTTPGRILFY 1797
[192][TOP]
>UniRef100_B9YNQ0 DNA-directed RNA polymerase n=1 Tax='Nostoc azollae' 0708
RepID=B9YNQ0_ANAAZ
Length = 625
Score = 63.9 bits (154), Expect = 8e-09
Identities = 46/160 (28%), Positives = 74/160 (46%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+ N GAT
Sbjct: 490 LMLASNNILSPATGKPIVTPSQDMVLGAYYLTAENP---GAT------------------ 528
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
K +F + D I AY+Q++++ S ++R+ + P+EV GT
Sbjct: 529 -----KGAGGYFTSLDDVIMAYQQEQVDLHSYVYVRFDGEMETSQPDTEPVEVIENEDGT 583
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+Y+ V + + + YI TT G + + + I+EA+
Sbjct: 584 QTLMYKFRRVRQDAEGNLISQYIYTTPGRVIYNKAIQEAL 623
[193][TOP]
>UniRef100_Q1KVT3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Scenedesmus
obliquus RepID=RPOC1_SCEOB
Length = 1529
Score = 63.9 bits (154), Expect = 8e-09
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Frame = +1
Query: 4 MFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSG-NRRGIGATRYNPFNCRNS-------- 156
M + NL++ A G+ I +P+QDM++G Y LT + +G N +NS
Sbjct: 1352 MLATNNLMNSATGEAIILPSQDMVLGCYYLTLDFQSKFVGVQLSNLLKKQNSFFPFSKPT 1411
Query: 157 --KNEK----MSKNNSKYMKKKEPF--FCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIM 312
EK KN K+ + + F F N + AY++K+I+ +P W++W +
Sbjct: 1412 YLGKEKTFQIQGKNFEKFGIQNKAFLLFSNFLSVLNAYQRKEISLHTPVWVKWNSNVDFG 1471
Query: 313 SSREVPIEVHYESFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHI 450
+ P+E+ + G++ EI Y + K + IRTT G I
Sbjct: 1472 NEFSKPVEIRLQINGSWEEIQPKYTTFYNYKNKQLQKIIRTTPGRI 1517
[194][TOP]
>UniRef100_Q9TL05 DNA-directed RNA polymerase subunit beta' n=1 Tax=Nephroselmis
olivacea RepID=RPOC1_NEPOL
Length = 863
Score = 63.9 bits (154), Expect = 8e-09
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + NLLSPA G PI VP+QDM++G Y LT+ N
Sbjct: 644 LMLASHNLLSPATGQPIVVPSQDMVLGWYYLTTEN------------------------- 678
Query: 181 NSKYMKKKEP-FFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREV---PIEVHYE 348
+++ E +F D AY Q +I+ S W+RW + E P+E+ +
Sbjct: 679 --PWIESTEGLYFSGLSDVEHAYHQGQIHLHSIIWVRWGGESEGSLGDEFEDNPLEIRID 736
Query: 349 SFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAIQ 483
+ G + IY Y + + ++ +IRTT G + F + + I+
Sbjct: 737 ANGHSWHIYSQYQLRYDDEGDLISQFIRTTTGRVVFNQLVHRHIE 781
[195][TOP]
>UniRef100_B2X1Z3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Oedogonium
cardiacum RepID=RPOC1_OEDCA
Length = 1947
Score = 63.5 bits (153), Expect = 1e-08
Identities = 44/152 (28%), Positives = 70/152 (46%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
L+ S NLLSPA G+PI +P+QDM++G Y LT N + S +K +
Sbjct: 1801 LVLSRNNLLSPATGEPILLPSQDMVLGCYYLTIENLQ--------------SLTQKKFRI 1846
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K + ++ F + AY++ +IN + W+ + S + P E+ G
Sbjct: 1847 NRKILNQRNYIFSDFEKIFIAYQRNQINLHTNIWVIFNNTIESDSILQEPTEIQVLFSGQ 1906
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISF 456
Y ++Y Y + +I +RTT G I F
Sbjct: 1907 YIKVYSDYYQKFNRNGKIYNQVVRTTPGRILF 1938
[196][TOP]
>UniRef100_Q06J18 DNA-directed RNA polymerase subunit beta' n=1 Tax=Bigelowiella natans
RepID=RPOC1_BIGNA
Length = 760
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
L++S NLL +MG PI P QD+++G Y LTS N T P + N K E S
Sbjct: 617 LLWSRNNLLLSSMGSPILTPGQDVVLGCYYLTS-NLLDKVKTYIKPCHL-NKKGENWS-- 672
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREV----PIEVHYE 348
+F N D + AY Q K+N + W++W + IM +EV+
Sbjct: 673 ---------IYFNNLNDVLKAYNQNKVNIHTEIWIKW--SENIMFENNSLDLRRLEVYSG 721
Query: 349 SFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISF 456
F + YE+Y + ++K YI+TTVG + F
Sbjct: 722 KFFRFQ--YENYQINYNLKGYQLSQYIKTTVGRVIF 755
[197][TOP]
>UniRef100_C7BEV4 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri
RepID=C7BEV4_CHLKE
Length = 882
Score = 63.2 bits (152), Expect = 1e-08
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRN---SKNEKM 171
LM+S ++L+PA G P+ +PTQDM++G Y LT + N +N S +
Sbjct: 707 LMWSRNHILAPASGQPLLLPTQDMVLGCYYLTILKNSKSKNYKNNLVKTKNFSFSVSRLK 766
Query: 172 SKNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW------PIDQRIMSSREVPI 333
N + K +F + Y Q I +P W+RW I + S E PI
Sbjct: 767 PGINKVFGKTSGLYFSTLNQVLQCYDQGVIQTHTPIWVRWFGLIQNFIGEHESKSLEQPI 826
Query: 334 EVHYESFGTYYEIYEHYLVIRSIKKEIRC----------IYIRTTVGHISFYR 462
E + +G I+ H + +K+ C +YIRTT G I F++
Sbjct: 827 EFRIDLYGKSEYIF-HDRELYKLKQFSNCFYKFHHTENSVYIRTTAGRIFFHK 878
[198][TOP]
>UniRef100_Q55085 DNA-directed RNA polymerase subunit gamma n=1 Tax=Synechococcus sp.
PCC 7002 RepID=RPOC1_SYNP2
Length = 636
Score = 63.2 bits (152), Expect = 1e-08
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGN---RRGIGATRYNPFNCRNSKNEKM 171
LM + N+LSPA G PI P+QDM++G Y LT+ N +RG G
Sbjct: 490 LMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPGAQRGAGR---------------- 533
Query: 172 SKNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYES 351
+F + DA+ AY Q ++ + WLR+ D + + +E
Sbjct: 534 -------------YFSSMDDALRAYEQGDVDLHAYVWLRYLGDVETNEADDRVLESETLE 580
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
G+ +IY V + + E+ +IRTT G I + + I++A+
Sbjct: 581 DGSILKIYRERKVRETAEGEMISQFIRTTPGRIIYNKTIQDAL 623
[199][TOP]
>UniRef100_Q3M5C9 DNA-directed RNA polymerase subunit gamma n=1 Tax=Anabaena
variabilis ATCC 29413 RepID=RPOC1_ANAVT
Length = 625
Score = 62.8 bits (151), Expect = 2e-08
Identities = 46/160 (28%), Positives = 76/160 (47%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+ N GAT K
Sbjct: 490 LMLASNNILSPATGRPIITPSQDMVLGAYYLTAENP---GAT----------------KG 530
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
KY F + D I A++Q++I+ + ++R+ + P+EV G+
Sbjct: 531 AGKY-------FASLDDVIMAFQQEQIDLHAYIYVRFDGEVESDQPDTDPLEVTNNDDGS 583
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+Y++ V + + Y+RTT G + + + I+EA+
Sbjct: 584 RTVLYKYRRVREDAQGNLISQYVRTTPGRVIYNKAIQEAL 623
[200][TOP]
>UniRef100_B0C2D1 DNA-directed RNA polymerase subunit gamma n=1 Tax=Acaryochloris
marina MBIC11017 RepID=RPOC1_ACAM1
Length = 623
Score = 62.8 bits (151), Expect = 2e-08
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGN-RRGIGATRYNPFNCRNSKNEKMSK 177
LM + N+LSPA G PI P+QDM++G Y LT+ N R GA +Y
Sbjct: 489 LMLASNNILSPATGRPIVTPSQDMVLGAYYLTADNPGRQNGAGKY--------------- 533
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW--PIDQRIMSSREVPIEVHYES 351
F DAI AY Q++++ + W+R+ P+D +V EV +
Sbjct: 534 ------------FAGLDDAIMAYEQQQVDLHAYVWVRFDGPVDD---GEDDVEPEVETSA 578
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
G + Y + + + YIRTT G I + + I++++
Sbjct: 579 DGVVTQTYPSRRIRKDADGTLISQYIRTTPGRIIYNKTIQDSL 621
[201][TOP]
>UniRef100_P14563 DNA-directed RNA polymerase subunit gamma n=1 Tax=Nostoc commune
RepID=RPOC1_NOSCO
Length = 621
Score = 62.0 bits (149), Expect = 3e-08
Identities = 47/160 (29%), Positives = 73/160 (45%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+ N GAT K
Sbjct: 486 LMLASNNILSPATGKPIITPSQDMVLGAYYLTAENP---GAT----------------KG 526
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
KY E D I A++Q++I+ + ++R+ + P++V GT
Sbjct: 527 AGKYFSSLE-------DVIMAFQQEQIDLHAYIYVRFDGEIESDQPDTEPVKVTENEDGT 579
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+Y+ V + K + YI TT G + + I+EA+
Sbjct: 580 RTLLYKFRRVRQDAKGNVLSQYIYTTPGRVIYNNAIQEAL 619
[202][TOP]
>UniRef100_P22704 DNA-directed RNA polymerase subunit gamma n=1 Tax=Nostoc sp. PCC
7120 RepID=RPOC1_ANASP
Length = 625
Score = 61.2 bits (147), Expect = 5e-08
Identities = 46/160 (28%), Positives = 75/160 (46%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+ N GAT K
Sbjct: 490 LMLASNNILSPATGRPIITPSQDMVLGAYYLTAENP---GAT----------------KG 530
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
KY F + D I A++Q++I+ + ++R+ D P++V G+
Sbjct: 531 AGKY-------FASLDDVIMAFQQEQIDLHAYVYVRFDGDVESDQPDTEPVKVTTNEDGS 583
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+Y++ V + + YI TT G + + + I+EA+
Sbjct: 584 RTVLYKYRRVREDAQGNVISQYIYTTPGRVIYNKAIQEAL 623
[203][TOP]
>UniRef100_A6YGE1 DNA-directed RNA polymerase n=1 Tax=Leptosira terrestris
RepID=A6YGE1_LEPTE
Length = 2003
Score = 60.8 bits (146), Expect = 7e-08
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 25/181 (13%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTS-GNRRGIGATRYNPFNCRNSKNEKMSK 177
L++S ++SPA G P+ VP+QDM++G Y LT+ N+ +Y F N K
Sbjct: 1803 LLWSRNQIMSPATGQPLMVPSQDMVLGCYYLTTYKNKNKPILNKYTNFKFINKDPIKGRV 1862
Query: 178 NNSKYM------------------------KKKEPFFCNSYDAIGAYRQKKINFDSPFWL 285
N+SK M + F N + A+R KI + W+
Sbjct: 1863 NDSKSMSSLINDEQAYKYKFAHHLLAYKMTNNNDYIFSNFQQVLLAFRLNKIKLHTVIWV 1922
Query: 286 RWPIDQRIMSSREVPIEVHYESFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYRE 465
R + + E PIE+ FG + E +R+ + IRTT G I ++
Sbjct: 1923 RSQLQSQNGIQSEFPIEIRLNVFGLTKDFREETQNLRNNLGQKTVGLIRTTPGRILLHQA 1982
Query: 466 I 468
I
Sbjct: 1983 I 1983
[204][TOP]
>UniRef100_P74177 DNA-directed RNA polymerase subunit gamma n=1 Tax=Synechocystis sp.
PCC 6803 RepID=RPOC1_SYNY3
Length = 626
Score = 60.8 bits (146), Expect = 7e-08
Identities = 47/163 (28%), Positives = 72/163 (44%), Gaps = 3/163 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG-IGATRYNPFNCRNSKNEKMSK 177
LM + N+LSPA G PI P+QDM++G Y LT+ N GA RY
Sbjct: 490 LMLACHNVLSPATGKPIVAPSQDMVLGCYYLTAENPNAQKGAGRY--------------- 534
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF- 354
F DA+ AY +++ S W+R +D+ +++ + + E
Sbjct: 535 ------------FAGIEDALRAYDHGQVDLHSQIWIR-HLDEDVVTEKPDTEVIKTEDLG 581
Query: 355 -GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
GT + Y + + EI YI+TT G I + + I EA+
Sbjct: 582 DGTVMKYYRERKIREGVDGEIITQYIQTTPGRIIYNKTIAEAL 624
[205][TOP]
>UniRef100_P49467 DNA-directed RNA polymerase subunit beta' n=1 Tax=Odontella sinensis
RepID=RPOC1_ODOSI
Length = 843
Score = 60.5 bits (145), Expect = 9e-08
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG-IGATRYNPFNCRNSKNEKMSK 177
LM + N LSPA G+PI +P+QDM++G Y LT N +G +G+ +Y
Sbjct: 709 LMLAPYNFLSPANGEPIILPSQDMVLGCYYLTVSNIKGLLGSNQY--------------- 753
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
F + D + AY Q KI + W+R+ + + + I+++ S
Sbjct: 754 ------------FASLEDVLLAYNQDKIELHTAIWIRYTDNYIEPLNFKKQIQLNDAS-- 799
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
Y EIYE+ + R Y++TT G + F ++ +
Sbjct: 800 -YIEIYENMQIRRDKDGNKIVQYLQTTTGRVIFNYTVQTTL 839
[206][TOP]
>UniRef100_A0ZH97 DNA-directed RNA polymerase n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZH97_NODSP
Length = 625
Score = 60.1 bits (144), Expect = 1e-07
Identities = 42/160 (26%), Positives = 72/160 (45%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT ++N +K
Sbjct: 490 LMLASNNVLSPATGRPIITPSQDMVLGAYYLT-------------------AENPAATKG 530
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
KY + + D I A++Q +++ + ++R+ D P+EV GT
Sbjct: 531 MGKY-------YASMDDVIMAFQQDQVDLHAYVYVRFDGDVESEKPDTEPLEVTENVDGT 583
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+Y+ + + + Y+ TT G + + + IEEA+
Sbjct: 584 RTLLYKSRRIREDAQGNLISQYVHTTPGRVIYNKAIEEAL 623
[207][TOP]
>UniRef100_B2J199 DNA-directed RNA polymerase subunit gamma n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=RPOC1_NOSP7
Length = 625
Score = 59.7 bits (143), Expect = 1e-07
Identities = 45/160 (28%), Positives = 72/160 (45%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+ N GAT
Sbjct: 490 LMLASNNILSPATGKPIITPSQDMVLGAYYLTAENP---GAT------------------ 528
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
K +F + D I A++Q +I+ + ++R+ + P++V GT
Sbjct: 529 -----KGAGNYFSSLEDVIMAFQQDQIDLHAYIYVRFDGEIESDQPDTEPVKVTENEDGT 583
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+Y+ V + K + YI TT G + + I+EA+
Sbjct: 584 RTLLYKFRRVRQDAKGNVLSQYIYTTPGRVIYNNAIQEAL 623
[208][TOP]
>UniRef100_O19897 DNA-directed RNA polymerase subunit beta' n=1 Tax=Cyanidium
caldarium RepID=RPOC1_CYACA
Length = 633
Score = 59.7 bits (143), Expect = 1e-07
Identities = 44/152 (28%), Positives = 67/152 (44%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N LSPA G PI P+QDM++G Y LT+ N
Sbjct: 491 LMLAPNNFLSPATGQPIITPSQDMVLGCYYLTN--------------------------N 524
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K +F + DAI AY+QK I+ + W+++ + ++ T
Sbjct: 525 NLANQKGSGHYFSSFEDAIIAYKQKLISLHAFIWVKFYGTINNLDIGRFIKSTLCKNKLT 584
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISF 456
+ YE+ V + I+ I C +I+T+VG I F
Sbjct: 585 TTDYYENLQVKKDIEGTITCQFIKTSVGRIFF 616
[209][TOP]
>UniRef100_A0T0D8 DNA-directed RNA polymerase subunit beta' n=1 Tax=Phaeodactylum
tricornutum RepID=RPOC1_PHATR
Length = 696
Score = 59.3 bits (142), Expect = 2e-07
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG-IGATRYNPFNCRNSKNEKMSK 177
LM + N LSPA G+PI +P+QDM++G Y LT N G +G++ Y
Sbjct: 563 LMLAPYNFLSPANGEPIIMPSQDMVLGCYYLTVNNINGLLGSSHY--------------- 607
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
F N D I AY Q K+ S W+R +Q I S + ++
Sbjct: 608 ------------FANLADVILAYSQSKLEIHSAIWIRLE-EQEINES--ILLKTTILDDE 652
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVG 444
T E YE+ + ++ ++ Y++TT G
Sbjct: 653 TKIEFYENLQIRKTKDNQLIVQYVQTTTG 681
[210][TOP]
>UniRef100_P42079 DNA-directed RNA polymerase subunit gamma n=1 Tax=Synechococcus
elongatus PCC 7942 RepID=RPOC1_SYNE7
Length = 624
Score = 58.2 bits (139), Expect = 4e-07
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG-IGATRYNPFNCRNSKNEKMSK 177
LM + N+LSPA G PI P+QDM++G Y LT+ N GA RY
Sbjct: 489 LMLASGNILSPATGQPIVTPSQDMVLGCYYLTAENPGAQKGAGRY--------------- 533
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
F N DAI A+ Q ++ + W+R+ + + P V G
Sbjct: 534 ------------FANLEDAIRAFEQGSVDLHAWVWVRFDGEVESEGESDEPESVVAADDG 581
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
T + Y + + + Y++TT G I F ++ A+
Sbjct: 582 TVTKTYRFRRIRETEDGQRLSQYVKTTPGRILFNNTVQTAL 622
[211][TOP]
>UniRef100_B7JWQ8 DNA-directed RNA polymerase subunit gamma n=2 Tax=Cyanothece
RepID=RPOC1_CYAP8
Length = 625
Score = 58.2 bits (139), Expect = 4e-07
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+ +N K K
Sbjct: 490 LMLACHNILSPATGKPIVAPSQDMVLGCYYLTA-------------------ENPKAQKG 530
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
++Y F + DAI AY Q ++ + WLR+ D + + + EV
Sbjct: 531 ANRY-------FGSIPDAIKAYEQGTVDLHAYVWLRYNGD---VVTHKPDTEVLKTETLD 580
Query: 361 YYEIYEHYLVIRSIKK--EIRCIYIRTTVGHISFYREIEEAI 480
+ +HY R +K E+ +IRTT G I + + IE+A+
Sbjct: 581 DGSVIKHYRERRVREKDGEVISQFIRTTPGRIIYNKTIEDAL 622
[212][TOP]
>UniRef100_B8HTV9 DNA-directed RNA polymerase subunit gamma n=1 Tax=Cyanothece sp.
PCC 7425 RepID=RPOC1_CYAP4
Length = 622
Score = 57.4 bits (137), Expect = 7e-07
Identities = 40/160 (25%), Positives = 68/160 (42%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+
Sbjct: 489 LMLASNNILSPATGKPIVTPSQDMVLGCYYLTA--------------------------E 522
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N K + + +F + D + AY Q ++ + W+R+ D + + E+ G
Sbjct: 523 NPKSQQGEGTYFASMNDVVMAYEQGQVELHAFIWVRY--DGEVEDDDKGEPEIQTSGDGL 580
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+Y + ++ YIRTT G I + + I+E++
Sbjct: 581 VTHLYPSKRLRFDQDGKLISQYIRTTPGRIIYNKTIQESL 620
[213][TOP]
>UniRef100_B8LEQ1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8LEQ1_THAPS
Length = 696
Score = 56.6 bits (135), Expect = 1e-06
Identities = 40/150 (26%), Positives = 67/150 (44%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N LSPA G+PI +P+QDM++G Y LT N G+ + +
Sbjct: 562 LMLAPYNFLSPANGEPIIMPSQDMVLGCYYLTVNNINGLLGSNH---------------- 605
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+F + D I AY Q +I + W+R+ + +S I+ + +
Sbjct: 606 ----------YFADLNDVILAYNQDQIEIHTSIWVRY---KHKISKPSNFIKKIILNDKS 652
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHI 450
Y E YE+ + + +I Y++TT G +
Sbjct: 653 YIEYYENIQIRKDENDQIIVQYLQTTTGRV 682
[214][TOP]
>UniRef100_A0T0R0 DNA-directed RNA polymerase subunit beta' n=1 Tax=Thalassiosira
pseudonana RepID=RPOC1_THAPS
Length = 732
Score = 56.6 bits (135), Expect = 1e-06
Identities = 40/150 (26%), Positives = 67/150 (44%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N LSPA G+PI +P+QDM++G Y LT N G+ + +
Sbjct: 598 LMLAPYNFLSPANGEPIIMPSQDMVLGCYYLTVNNINGLLGSNH---------------- 641
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+F + D I AY Q +I + W+R+ + +S I+ + +
Sbjct: 642 ----------YFADLNDVILAYNQDQIEIHTSIWVRY---KHKISKPSNFIKKIILNDKS 688
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHI 450
Y E YE+ + + +I Y++TT G +
Sbjct: 689 YIEYYENIQIRKDENDQIIVQYLQTTTGRV 718
[215][TOP]
>UniRef100_A3YVR2 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YVR2_9SYNE
Length = 634
Score = 56.2 bits (134), Expect = 2e-06
Identities = 40/160 (25%), Positives = 68/160 (42%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G+PI P+QDM++G+Y LT+ +R K
Sbjct: 494 LMLASNNILSPATGEPIITPSQDMVLGIYYLTAVDR----------------------KE 531
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+ + F D I A+ ++ ++ W+R+ + E P+ S GT
Sbjct: 532 SMPSFGDRSRTFAGLNDVINAFEERHLDLHQWVWVRFSGEVDDEDEAEAPLHEEILSDGT 591
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
E +++ + Y+ TTVG + R I +A+
Sbjct: 592 RIEQWKYRRDRFDEDGALITRYLLTTVGRVVMNRTIIDAV 631
[216][TOP]
>UniRef100_Q5MZ22 DNA-directed RNA polymerase subunit gamma n=1 Tax=Synechococcus
elongatus PCC 6301 RepID=RPOC1_SYNP6
Length = 624
Score = 56.2 bits (134), Expect = 2e-06
Identities = 43/161 (26%), Positives = 66/161 (40%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG-IGATRYNPFNCRNSKNEKMSK 177
LM + N+LSPA G PI P+QDM++G Y LT+ N GA RY
Sbjct: 489 LMLASGNILSPATGQPIVTPSQDMVLGCYYLTAENPGAQKGAGRY--------------- 533
Query: 178 NNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFG 357
F N DAI A+ Q ++ + W+R+ + + P V G
Sbjct: 534 ------------FANLEDAIRAFEQGSVDLHAWVWVRFDGEVESEGESDEPESVVAADDG 581
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
T + Y + + + Y++T G I F ++ A+
Sbjct: 582 TVTKTYRFRRIRETEDGQRLSQYVKTAPGRILFNNTVQTAL 622
[217][TOP]
>UniRef100_A6MVX3 DNA-directed RNA polymerase subunit beta' n=1 Tax=Rhodomonas salina
RepID=RPOC1_RHDSA
Length = 623
Score = 56.2 bits (134), Expect = 2e-06
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N LSPA G+PI +P+QDM++G Y LT+ +
Sbjct: 489 LMLAPYNFLSPATGEPIIMPSQDMVLGCYYLTT--------------------------H 522
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW--PIDQRIMSSREVPIEVHYESF 354
N K + +F N DA+ AY KKI S W+R+ ++ + R ++ Y
Sbjct: 523 NPSQQKSQAYYFSNLEDALLAYECKKIALHSYVWVRFEGEVEDENLKIRTSILKEKYT-- 580
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+I+ ++ +K++ YI TT G I + + +++
Sbjct: 581 ---LDIFTERIIKTDEEKKVIAQYILTTPGRILLNKTLFDSL 619
[218][TOP]
>UniRef100_Q7NDF8 DNA-directed RNA polymerase subunit gamma n=1 Tax=Gloeobacter
violaceus RepID=RPOC1_GLOVI
Length = 608
Score = 55.5 bits (132), Expect = 3e-06
Identities = 48/160 (30%), Positives = 67/160 (41%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI PTQDM++G Y LT N +K
Sbjct: 491 LMLASNNVLSPATGRPIITPTQDMVLGCYYLT-------------------VDNPDATKG 531
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
+ KY F +S DA+ AY Q I+ + WLR+ E +E
Sbjct: 532 SGKY-------FGSSEDAVIAYNQGMIDLHAKIWLRF----------EGEVET------- 567
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+ E V R + ++RTTVG I F + I+E +
Sbjct: 568 --DNPEDLRVRRDEQGNALSQFVRTTVGRIIFNQVIQETL 605
[219][TOP]
>UniRef100_D0EVW4 RNA polymerase beta' subunit n=1 Tax=Bryopsis hypnoides
RepID=D0EVW4_9CHLO
Length = 920
Score = 55.1 bits (131), Expect = 4e-06
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNS--KNEKMS 174
L++S N +SPA G PI +P+QDM++G LT N + Y N + S +N +
Sbjct: 391 LLWSLNNFISPATGQPILLPSQDMVLGSSYLTLKNSKTFQEIYYQ-LNTQKSFDRNLILK 449
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESF 354
+ + K+ F + I Y Q FW+ W + +E+ F
Sbjct: 450 IQQLSFYEIKQIFNKTQVETIQHYHQS-------FWIIWNQHFETDCKTQKLLEMKLNRF 502
Query: 355 GTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFY 459
G + +IY + S K + + I TT+G I FY
Sbjct: 503 GVFQKIYPNLQKSFSSKNKQQNQKILTTIGRILFY 537
[220][TOP]
>UniRef100_C7BEK7 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor
RepID=C7BEK7_PEDMN
Length = 712
Score = 55.1 bits (131), Expect = 4e-06
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 4/154 (2%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM+S NLLSPA G PI P+QDM++G Y LT+ N++ +S N
Sbjct: 574 LMWSRNNLLSPATGQPILGPSQDMVLGCYYLTTENQK------------------NLSSN 615
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW----PIDQRIMSSREVPIEVHYE 348
S F + + + AY QK + + W++ D +++ E+ +++
Sbjct: 616 AS--------LFYSFDEVLDAYYQKTLPIHTYVWVKCSDSIEFDDSTLNTYELRVDLDGN 667
Query: 349 SFGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHI 450
S + +Y+ Y + + + Y+RTTVG I
Sbjct: 668 SHFIFANLYQIYDKTQKLVGQ----YVRTTVGRI 697
[221][TOP]
>UniRef100_Q2JQT5 DNA-directed RNA polymerase subunit gamma n=1 Tax=Synechococcus sp.
JA-3-3Ab RepID=RPOC1_SYNJA
Length = 627
Score = 55.1 bits (131), Expect = 4e-06
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT+ +
Sbjct: 491 LMLATNNILSPATGAPIITPSQDMVLGCYYLTA--------------------------D 524
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRI-MSSREVPIEVHYESFG 357
N + +F + DA+ AY + I S W+R+ + +E ++ E G
Sbjct: 525 NPHAPDLGDRYFASLEDALIAYDRGVIGLHSKIWVRYSGPMELGKEEKESEPQIIEEPGG 584
Query: 358 TYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
T +I + + + YIRTT G I F + +++ +
Sbjct: 585 TRLKITNYRRIREDRDGNVISQYIRTTAGRIIFNKTVQDIL 625
[222][TOP]
>UniRef100_C6KII8 DNA-directed RNA polymerase n=1 Tax=Aureococcus anophagefferens
RepID=C6KII8_9STRA
Length = 602
Score = 54.7 bits (130), Expect = 5e-06
Identities = 47/152 (30%), Positives = 65/152 (42%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM N +SPA G+PI +P+QDM++G + LTS NR +K
Sbjct: 470 LMLGPNNFMSPATGEPILLPSQDMVLGSHYLTSQNR-------------------PSAKG 510
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N Y F N + AY KI S WL++ + Q S++ V +E + G+
Sbjct: 511 NHHY-------FANMDSVLQAYNCDKIALHSSIWLKF-LGQIQTSTKPVLLETTPLNDGS 562
Query: 361 YYEIYEHYLVIRSIKKEIRCIYIRTTVGHISF 456
Y IR EI YI TT G + F
Sbjct: 563 VLFTYTD-RQIRKKAGEILVTYILTTPGRVLF 593
[223][TOP]
>UniRef100_C0JX51 DNA-directed RNA polymerase n=1 Tax=Pyramimonas parkeae
RepID=C0JX51_9CHLO
Length = 667
Score = 54.7 bits (130), Expect = 5e-06
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 6/158 (3%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N LSPA G PI +P+QDM++G Y LT N N
Sbjct: 526 LMLASNNWLSPATGQPILLPSQDMVLGCYYLTVEN------------------------N 561
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSR---EVPIEVHYES 351
+ +KK+ +F + +A AY+++ ++ +P W + D++ + S E PIE+ ++
Sbjct: 562 SPLIRQKKKLYFYHLEEASIAYQRQDVDIHTPVW--FSCDKKNIESNKGAEEPIEIRFDK 619
Query: 352 FGTYYEIYEHYLVIRSIKKEI---RCIYIRTTVGHISF 456
IY+ + + ++ TTVG + F
Sbjct: 620 IRNKTTIYKRAQIQERKSNSLFSRNQYFLLTTVGRMIF 657
[224][TOP]
>UniRef100_Q2JJ18 DNA-directed RNA polymerase subunit gamma n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=RPOC1_SYNJB
Length = 627
Score = 54.7 bits (130), Expect = 5e-06
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 3/163 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRG--IGATRYNPFNCRNSKNEKMS 174
LM + N+LSPA G PI P+QDM++G Y LT+ N IG
Sbjct: 491 LMLATNNILSPATGAPIITPSQDMVLGCYYLTADNPHAPDIG------------------ 532
Query: 175 KNNSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRI-MSSREVPIEVHYES 351
+ FF + DA+ AY + I S W+R+ + +E ++ E+
Sbjct: 533 ----------DRFFASLEDALIAYDRGAIGLHSKVWVRYHGPMELGKGEKESEPQIIEEA 582
Query: 352 FGTYYEIYEHYLVIRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
G +I + + + YIRTT G I F + +++ +
Sbjct: 583 GGIRLKITNYRRIREDQNGNVISQYIRTTPGRIIFNKTVQDIL 625
[225][TOP]
>UniRef100_B1WP07 DNA-directed RNA polymerase subunit gamma n=1 Tax=Cyanothece sp.
ATCC 51142 RepID=RPOC1_CYAA5
Length = 628
Score = 54.7 bits (130), Expect = 5e-06
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT ++N + K
Sbjct: 490 LMLACHNILSPATGKPIVAPSQDMVLGCYYLT-------------------AENPQSQKG 530
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRWPIDQRIMSSREVPIEVHYESFGT 360
N +Y F N DA+ A+ ++ + WLR + + EV
Sbjct: 531 NGRY-------FGNIDDAVKAFEHGLVDLHAYVWLRSEDPNEEVVTDLPDTEVLKTETLE 583
Query: 361 YYEIYEHYLV--IRSIKKEIRCIYIRTTVGHISFYREIEEAI 480
+ +HY +R I E +IRTT G I + + I++A+
Sbjct: 584 DGSVIKHYRERRVREIDGEAVSQFIRTTPGRIIYNKTIQDAL 625
[226][TOP]
>UniRef100_Q8DL56 DNA-directed RNA polymerase subunit gamma n=1
Tax=Thermosynechococcus elongatus BP-1 RepID=RPOC1_THEEB
Length = 622
Score = 54.3 bits (129), Expect = 6e-06
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 6/166 (3%)
Frame = +1
Query: 1 LMFSDTNLLSPAMGDPISVPTQDMLIGLYVLTSGNRRGIGATRYNPFNCRNSKNEKMSKN 180
LM + N+LSPA G PI P+QDM++G Y LT ++N K+
Sbjct: 489 LMLASNNILSPATGKPIITPSQDMVLGCYYLT-------------------AENPKLPDY 529
Query: 181 NSKYMKKKEPFFCNSYDAIGAYRQKKINFDSPFWLRW--PIDQRIMSSREVPIEVHYESF 354
+ +Y + N D + AY Q + + W+R+ +D S ++ YE
Sbjct: 530 SDRY-------YANFQDVVMAYEQGHLPLHAFVWVRYDGEVDDGDTSEPQI---TTYEDG 579
Query: 355 GTYYEIYEHYLVIRSIKKEIR----CIYIRTTVGHISFYREIEEAI 480
E +R +K++ YIRTT G I + + I+EA+
Sbjct: 580 SRLLE-----YALRRVKEDANGQRISQYIRTTPGRIIYNQTIQEAL 620