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[1][TOP] >UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=Q2HW77_MEDTR Length = 224 Score = 199 bits (505), Expect = 2e-49 Identities = 103/137 (75%), Positives = 117/137 (85%), Gaps = 6/137 (4%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403 QVVF GTD+IRKSNL I +QIV+KERLSRLIL+++SKMT YARKELENC VEII+LN Sbjct: 88 QVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELENCPFKVEIIQLN 147 Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241 D++VN TKHV VLTA KQ+LL KYK+EEKQLPHMLRTD +ASYYGLE+GQVVKI Sbjct: 148 DLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLPHMLRTDAIASYYGLEKGQVVKI 207 Query: 240 SHSGEVFNSLVTYRCVV 190 SHSGE+FNSLV YRCVV Sbjct: 208 SHSGEMFNSLVMYRCVV 224 [2][TOP] >UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR Length = 233 Score = 144 bits (362), Expect = 7e-33 Identities = 69/135 (51%), Positives = 100/135 (74%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 V+F GTD I+ +N+ ++ QI+NKE L LILI++SKM +A+KELE VE+ ++ D Sbjct: 98 VMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFPFKVEVFQITD 157 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKHV +LTA KQ+++ KYK+E+KQLP ML +D + YYGL++GQ+VKI+ Sbjct: 158 LLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKIT 217 Query: 237 HSGEVFNSLVTYRCV 193 +SGE+ + LVTYRCV Sbjct: 218 YSGEIVDHLVTYRCV 232 [3][TOP] >UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9RGC5_RICCO Length = 239 Score = 136 bits (342), Expect = 1e-30 Identities = 74/135 (54%), Positives = 96/135 (71%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 VVF GT+ I+ +N+ + QI NKE L+ LILI++SKM YARKEL VEI ++D Sbjct: 104 VVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSKVEIFHISD 163 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKHV VLTA KQ+LL K+ E+KQLP ML TD ++ YYG E+GQVVKI+ Sbjct: 164 LLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRMLVTDAISRYYGFEKGQVVKIT 223 Query: 237 HSGEVFNSLVTYRCV 193 +SG + +SLVTYRCV Sbjct: 224 YSGGLVDSLVTYRCV 238 [4][TOP] >UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9ST46_RICCO Length = 238 Score = 125 bits (314), Expect = 2e-27 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 V+F G I+ S + AI QIVNK+ L+ LIL++++++T A K ++ + VE+ ++ D Sbjct: 103 VLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITD 162 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKHV VLT KQ+LLK Y IEEKQLP +LR D +A YYGLE+GQVVK++ Sbjct: 163 LLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVT 222 Query: 237 HSGEVFNSLVTYRCV 193 +SGE+ S VTYRCV Sbjct: 223 YSGEITESHVTYRCV 237 [5][TOP] >UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR Length = 248 Score = 125 bits (313), Expect = 3e-27 Identities = 67/135 (49%), Positives = 93/135 (68%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 VVF+G ++ + + I QIVN+E L+ LILIV++++T A K + VEI ++ D Sbjct: 113 VVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITD 172 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKHV VLT K+ LLKKY I+EKQLP ML+TD +A YYGL+RGQVVK++ Sbjct: 173 LLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 232 Query: 237 HSGEVFNSLVTYRCV 193 ++GE+ VTYRCV Sbjct: 233 YTGEITQMHVTYRCV 247 [6][TOP] >UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI Length = 221 Score = 124 bits (312), Expect = 4e-27 Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 VVF GTD IRK+ + I QI N+E L RLIL+++SKM +ARK ++ VE ++ + Sbjct: 87 VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 145 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 +++N TKHV +L+A K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+ Sbjct: 146 LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKIT 205 Query: 237 HSGEVFNSLVTYRCV 193 + G + +SLVTYRCV Sbjct: 206 YKGGMTDSLVTYRCV 220 [7][TOP] >UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001985D3D Length = 1260 Score = 124 bits (311), Expect = 5e-27 Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 VVF GTD IRK+ + I QI N+E L RLIL+++SKM +ARK ++ VE ++ + Sbjct: 87 VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 145 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 +++N TKHV +L+A K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+ Sbjct: 146 LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKIT 205 Query: 237 HSGEVFNSLVTYRCV 193 + G + +SLVTYRC+ Sbjct: 206 YKGGMTDSLVTYRCI 220 [8][TOP] >UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B0H1_VITVI Length = 162 Score = 124 bits (311), Expect = 5e-27 Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 VVF GTD IRK+ + I QI N+E L RLIL+++SKM +ARK ++ VE ++ + Sbjct: 28 VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 86 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 +++N TKHV +L+A K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+ Sbjct: 87 LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQKDDAIARYYGLEKGQVVKIT 146 Query: 237 HSGEVFNSLVTYRCV 193 + G + +SLVTYRCV Sbjct: 147 YKGGMTDSLVTYRCV 161 [9][TOP] >UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXN9_SOYBN Length = 237 Score = 122 bits (305), Expect = 3e-26 Identities = 68/135 (50%), Positives = 89/135 (65%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 V+F G ++ + + QI+N++ L+ LILIVE+ +T A K + VEI ++ D Sbjct: 102 VIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITD 161 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKHV VLT K LLKKY IEEKQLP ML+TD +A YYGLERGQVVK++ Sbjct: 162 LLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVT 221 Query: 237 HSGEVFNSLVTYRCV 193 +SGEV VTYRCV Sbjct: 222 YSGEVTQMHVTYRCV 236 [10][TOP] >UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7QJL2_VITVI Length = 229 Score = 122 bits (305), Expect = 3e-26 Identities = 64/135 (47%), Positives = 92/135 (68%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 V+F G D ++ + + +I QIVNK+ LS+LIL++++ +T A K ++ VE ++ D Sbjct: 94 VIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFSFQVEKFQITD 153 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKHV VLT K +LLKKY + EKQLP ML+ D +A YYGLE+GQVVK+ Sbjct: 154 LLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVI 213 Query: 237 HSGEVFNSLVTYRCV 193 ++GE+ S VTYRCV Sbjct: 214 YNGEITGSHVTYRCV 228 [11][TOP] >UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR Length = 216 Score = 116 bits (290), Expect = 1e-24 Identities = 59/135 (43%), Positives = 90/135 (66%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 V+F G ++ + I QI +++ L+ LIL++++ +T A K L+ + +EI ++ D Sbjct: 81 VIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITD 140 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKH+ VL+ KQ LLKKY IEEKQLP +L+ D ++ YYGLERGQVVK++ Sbjct: 141 LLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKKDAISRYYGLERGQVVKVT 200 Query: 237 HSGEVFNSLVTYRCV 193 + G++ S VTYRCV Sbjct: 201 YDGDITGSHVTYRCV 215 [12][TOP] >UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M1H8_ARATH Length = 233 Score = 107 bits (268), Expect = 5e-22 Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 6/136 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 VVF GT+ I ++ A+H QI N L +IL+++SKM +A+K L VE + D Sbjct: 98 VVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIED 157 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKH+ +L K++LL+K+ +E+KQLP++ D YYGL++ QVVKI+ Sbjct: 158 LLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKIT 217 Query: 237 HSGEVFNSLVTYRCVV 190 +S E VTYRC++ Sbjct: 218 YSKEPVGDFVTYRCII 233 [13][TOP] >UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1 Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH Length = 218 Score = 107 bits (266), Expect = 9e-22 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 6/135 (4%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 VVF GT ++ + + I ++++E ++ LIL+++S +T A K +E VE+ ++ D Sbjct: 83 VVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITD 142 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN +KHV VL K+ LLKK+ IEEKQLP + DP+ YYGLE GQV+K++ Sbjct: 143 LLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVT 202 Query: 237 HSGEVFNSLVTYRCV 193 + E+ S VTYRCV Sbjct: 203 YKDELSESHVTYRCV 217 [14][TOP] >UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis thaliana RepID=Q9M1J2_ARATH Length = 222 Score = 102 bits (255), Expect = 2e-20 Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 6/136 (4%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403 ++VF GT ++ + + ++ I+++E ++ LIL++++ +T A K +E VEI ++ Sbjct: 86 KIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQIT 145 Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241 D++VN TKH VL K LLKK+ IEEKQLP + + D + YYGLE+GQVVK+ Sbjct: 146 DLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKV 205 Query: 240 SHSGEVFNSLVTYRCV 193 ++ GE+ S V +RCV Sbjct: 206 NYRGELTESHVAFRCV 221 [15][TOP] >UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1 Tax=Arabidopsis thaliana RepID=Q8L947_ARATH Length = 222 Score = 102 bits (255), Expect = 2e-20 Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 6/136 (4%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403 ++VF GT ++ + + ++ I+++E ++ LIL++++ +T A K +E VEI ++ Sbjct: 86 KIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQIT 145 Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241 D++VN TKH VL K LLKK+ IEEKQLP + + D + YYGLE+GQVVK+ Sbjct: 146 DLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKV 205 Query: 240 SHSGEVFNSLVTYRCV 193 ++ GE+ S V +RCV Sbjct: 206 NYRGELTESHVAFRCV 221 [16][TOP] >UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA Length = 223 Score = 101 bits (251), Expect = 5e-20 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 7/135 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400 VVF G+ ++ S + I ++ +E L+ LIL+++S +T A K +E VE+ +L + Sbjct: 87 VVFCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFSFKVELFQLTE 146 Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++VN TKHV VL K+ L KK+ I+E+QLP +L+ DP A YYGLE+GQVV+++ Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKLLKKDPTAKYYGLEKGQVVEVT 206 Query: 237 HSGEVFNS-LVTYRC 196 + GE S V+YRC Sbjct: 207 YKGEGSESDHVSYRC 221 [17][TOP] >UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein, expressed n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXY2_ORYSJ Length = 335 Score = 101 bits (251), Expect = 5e-20 Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 7/137 (5%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406 Q+VF + ++ + + I+ Q +E LSRL+LI++SK+ AR+ ++ + V+I + Sbjct: 199 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 257 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 D++VN TKHV VL+A K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK Sbjct: 258 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 317 Query: 243 ISHSGEVFNSLVTYRCV 193 +++ GE+ V YRCV Sbjct: 318 VTYDGELTGKRVAYRCV 334 [18][TOP] >UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ Length = 227 Score = 101 bits (251), Expect = 5e-20 Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 7/137 (5%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406 Q+VF + ++ + + I+ Q +E LSRL+LI++SK+ AR+ ++ + V+I + Sbjct: 91 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 D++VN TKHV VL+A K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209 Query: 243 ISHSGEVFNSLVTYRCV 193 +++ GE+ V YRCV Sbjct: 210 VTYDGELTGKRVAYRCV 226 [19][TOP] >UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2RAP1_ORYSJ Length = 227 Score = 100 bits (248), Expect = 1e-19 Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 7/137 (5%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406 Q+VF + ++ + + I+ Q +E LSRL+LI++SK+ AR+ ++ + V+I + Sbjct: 91 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 D++VN TKHV VL+A K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209 Query: 243 ISHSGEVFNSLVTYRCV 193 + + GE+ V YRCV Sbjct: 210 VIYDGELTGKRVAYRCV 226 [20][TOP] >UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=A2ZBC5_ORYSI Length = 227 Score = 100 bits (248), Expect = 1e-19 Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 7/137 (5%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406 Q+VF + ++ + + I+ Q +E LSRL+LI++SK+ AR+ ++ + V+I + Sbjct: 91 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 D++VN TKHV VL+A K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209 Query: 243 ISHSGEVFNSLVTYRCV 193 + + GE+ V YRCV Sbjct: 210 VIYDGELTGKRVAYRCV 226 [21][TOP] >UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays RepID=B6TJI5_MAIZE Length = 264 Score = 93.6 bits (231), Expect = 1e-17 Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406 +VVF ++ + + I+ + V E LSRLILI++ K+ R+ ++ + V+ ++ Sbjct: 128 KVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQI 186 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 +++VN TKHV VLTA GK +LLK+Y + + QLP ML D +A YYGL +G VVK Sbjct: 187 TELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 246 Query: 243 ISHSGEVFNSLVTYRCV 193 + + E+ + VTYRC+ Sbjct: 247 VIYDSELTGNHVTYRCI 263 [22][TOP] >UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FYH9_MAIZE Length = 248 Score = 93.6 bits (231), Expect = 1e-17 Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406 +VVF ++ + + I+ + V E LSRLILI++ K+ R+ ++ + V+ ++ Sbjct: 112 KVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQI 170 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 +++VN TKHV VLTA GK +LLK+Y + + QLP ML D +A YYGL +G VVK Sbjct: 171 TELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 230 Query: 243 ISHSGEVFNSLVTYRCV 193 + + E+ + VTYRC+ Sbjct: 231 VIYDSELTGNHVTYRCI 247 [23][TOP] >UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum bicolor RepID=C5Y4H1_SORBI Length = 263 Score = 89.0 bits (219), Expect = 3e-16 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 7/137 (5%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406 +VVF + ++ + + ++ V E LSRLILI++ ++ AR+ ++ + V+ ++ Sbjct: 127 KVVFCPPEPVKIAAIRVVYTG-VKDENLSRLILILQGRIMSKAREAIKEIFPYKVDTFQI 185 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 +++VN TKH VLTA K +LLK+Y + + QLP ML D +A YYGL +G VVK Sbjct: 186 TELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 245 Query: 243 ISHSGEVFNSLVTYRCV 193 + + E+ + VTYRC+ Sbjct: 246 VIYDSELTGNHVTYRCI 262 [24][TOP] >UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum RepID=Q5DDM1_SCHJA Length = 206 Score = 86.3 bits (212), Expect = 2e-15 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELE--NCQHAVEIIKL 406 V F + + + A NQ+ ++++ E +TP A+ + +C++ +E Sbjct: 69 VFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFE 128 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 N+++VN T+H VLT K+ELL++Y+++E QLP M +DP+A YYGL RGQVV+ Sbjct: 129 NELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVR 188 Query: 243 ISHSGEVFNSLVTYRCVV 190 I+ E +TYR V+ Sbjct: 189 ITRPSETAGRYITYRIVL 206 [25][TOP] >UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA Length = 208 Score = 86.3 bits (212), Expect = 2e-15 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELE--NCQHAVEIIKL 406 V F + + + A NQ+ ++++ E +TP A+ + +C++ +E Sbjct: 71 VFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFE 130 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 N+++VN T+H VLT K+ELL++Y+++E QLP M +DP+A YYGL RGQVV+ Sbjct: 131 NELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVR 190 Query: 243 ISHSGEVFNSLVTYRCVV 190 I+ E +TYR V+ Sbjct: 191 ITRPSETAGRYITYRIVL 208 [26][TOP] >UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis guineensis RepID=B3TLL2_ELAGV Length = 204 Score = 85.9 bits (211), Expect = 2e-15 Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 8/114 (7%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHV------VLTAAGK 352 E ++R IL+V+ +TP+AR+ L ++ +E+ + +++VN +HV VLT+ K Sbjct: 91 ENVTRGILVVQQALTPFARQSLAEVSQKYMLEVFQDTELLVNIKEHVLVPEHQVLTSEEK 150 Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 + LL++Y ++E QLP + TDP+A YYGL+RGQVVKI E VTYR VV Sbjct: 151 KTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 204 [27][TOP] >UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE Length = 213 Score = 85.5 bits (210), Expect = 3e-15 Identities = 46/117 (39%), Positives = 73/117 (62%), Gaps = 8/117 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361 + ++RLSR IL+V+ +T +A+ ++ Q +E+ +++VVN T H + LTA Sbjct: 97 MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTA 156 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++YK++E QLP + +DP+A YYGL++GQV+KI E VTYR V Sbjct: 157 EEKRLLLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213 [28][TOP] >UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI Length = 210 Score = 84.7 bits (208), Expect = 5e-15 Identities = 47/117 (40%), Positives = 75/117 (64%), Gaps = 8/117 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E ++R I++V+S MTP A++ L + ++ +E +++++N T+H VV+T Sbjct: 94 MQEENITRAIILVQSGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ELLKKYK++E QL + DP+A YYGL+RGQVVKI E ++YR VV Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLVV 210 [29][TOP] >UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9ETS9_ORYSJ Length = 210 Score = 84.3 bits (207), Expect = 6e-15 Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 8/138 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV--EIIKL 406 V F D + ++ + +++ E +SR +L+++ +TP+AR L+ + + EI + Sbjct: 74 VFFPNDDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQE 132 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 ++++N +HV VL K+ LL++Y ++E QLP + TDP+A YYGL RGQVVK Sbjct: 133 AELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192 Query: 243 ISHSGEVFNSLVTYRCVV 190 I E VTYR VV Sbjct: 193 IIRPSETAGRYVTYRYVV 210 [30][TOP] >UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays RepID=B4FU06_MAIZE Length = 210 Score = 84.3 bits (207), Expect = 6e-15 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 9/139 (6%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARK---------ELENCQH 427 V F D + ++ + +++ E +SR +L+++ +TP+A+ LE Q Sbjct: 74 VFFPNDDKVGMKHIKK-YVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQE 132 Query: 426 AVEIIKLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVV 247 A +I + + V+ P +H VLT K+ LL++Y ++E QLP + TDP+A YYGL RGQVV Sbjct: 133 AEMLINIKEHVLVP-EHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVV 191 Query: 246 KISHSGEVFNSLVTYRCVV 190 KI E VTYR VV Sbjct: 192 KIIRPSETAGRYVTYRYVV 210 [31][TOP] >UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXZ4_SOYBN Length = 206 Score = 84.0 bits (206), Expect = 8e-15 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364 +N E + R IL+ ++ +TP+AR LE Q A ++ + + + P +H VLT Sbjct: 90 MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVP-EHQVLT 148 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 A K+ LL++Y ++E QLP + TDP+A YYGL+RGQVVKI E VTYR VV Sbjct: 149 DAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206 [32][TOP] >UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SVA4_SOYBN Length = 206 Score = 84.0 bits (206), Expect = 8e-15 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364 +N E + R IL+ ++ +TP+AR LE Q A ++ + + + P +H VLT Sbjct: 90 MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVP-EHQVLT 148 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 A K+ LL++Y ++E QLP + TDP+A YYGL+RGQVVKI E VTYR VV Sbjct: 149 DAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206 [33][TOP] >UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ Length = 210 Score = 84.0 bits (206), Expect = 8e-15 Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 8/138 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV--EIIKL 406 V F D + ++ + +++ E +SR +L+++ +TP+AR L+ + + EI + Sbjct: 74 VFFPNDDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQE 132 Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 ++++N +HV VL K+ LL++Y ++E QLP + TDP+A YYGL RGQVVK Sbjct: 133 AELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192 Query: 243 ISHSGEVFNSLVTYRCVV 190 I E VTYR VV Sbjct: 193 IIRPSETAGRYVTYRYVV 210 [34][TOP] >UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FEX9_MAIZE Length = 127 Score = 84.0 bits (206), Expect = 8e-15 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 9/120 (7%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVV 370 +++ E +SR +L+++ +TP+A+ LE Q A +I + + V+ P +H V Sbjct: 9 EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVP-EHQV 67 Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 LT K+ LL++Y ++E QLP + TDP+A YYGL RGQVVKI E VTYR VV Sbjct: 68 LTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYVV 127 [35][TOP] >UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RWG5_PHYPA Length = 208 Score = 84.0 bits (206), Expect = 8e-15 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 9/115 (7%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355 E + R IL+V+ +TP+AR+ LE Q A ++ + + V+ P H VLT Sbjct: 95 ENVHRAILVVQQNLTPFARQCVSEMASKYHLEVFQEAELLVNIKEHVLVPL-HEVLTPDE 153 Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++Y ++E QLP M DP+A YYGL+RGQVVKI E VTYR VV Sbjct: 154 KKTLLERYTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 208 [36][TOP] >UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKG6_PHYPA Length = 208 Score = 84.0 bits (206), Expect = 8e-15 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 9/115 (7%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355 E + R IL+V+ +TP+AR+ +E Q A ++ + D V+ P +H VL A Sbjct: 95 ENVHRAILVVQQNLTPFARQCVSEMSSKYHVEVFQEAELLVNIKDHVLVP-QHEVLNAEE 153 Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K LL++Y ++E QLP M DP+A YYGL+RGQVVKI E VTYR VV Sbjct: 154 KITLLQRYTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 208 [37][TOP] >UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caligus clemensi RepID=C1C1G9_9MAXI Length = 210 Score = 84.0 bits (206), Expect = 8e-15 Identities = 46/117 (39%), Positives = 75/117 (64%), Gaps = 8/117 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E ++R I++V++ MTP A++ L + ++ +E +++++N T+H VV+T Sbjct: 94 MQEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ELLKKYK++E QL + DP+A YYGL+RGQVVKI E ++YR VV Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLVV 210 [38][TOP] >UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XGH1_CAEBR Length = 211 Score = 84.0 bits (206), Expect = 8e-15 Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 8/119 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + ++ +SR I++V++ MTP A++ + + ++ +E +++VN T+H VV+ Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 TA K ELL +YK+++ QLP + + DP+A Y+GL RGQVVKI E +TYR VV Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211 [39][TOP] >UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL Length = 211 Score = 84.0 bits (206), Expect = 8e-15 Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 8/119 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + ++ +SR I++V++ MTP A++ + + ++ +E +++VN T+H VV+ Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 TA K ELL +YK+++ QLP + + DP+A Y+GL RGQVVKI E +TYR VV Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211 [40][TOP] >UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE Length = 213 Score = 83.6 bits (205), Expect = 1e-14 Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 8/117 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361 + ++RLSR IL+V+ +T +A+ ++ Q +E+ +++VVN T H + LT Sbjct: 97 MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTP 156 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++YK++E QLP + +DP+A YYGL++GQV+KI E VTYR V Sbjct: 157 EEKRLLLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213 [41][TOP] >UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE Length = 221 Score = 83.6 bits (205), Expect = 1e-14 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 8/135 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQ--HAVEIIKL 406 V F N+ K+++ + +K R I+I KM+P A+K L+ Q + +E Sbjct: 85 VYFCADKNVSKASMKTFIGSM-DKMGARRGIIIWSEKMSPAAKKTLQEMQSEYHLEDFPE 143 Query: 405 NDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 +D++VN TKH V+ K L+K+Y+++E QLP ++ TDP+A YYGL+RGQV+K Sbjct: 144 SDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRIMITDPVAKYYGLKRGQVMK 203 Query: 243 ISHSGEVFNSLVTYR 199 I + E +TYR Sbjct: 204 IERASETAGRYITYR 218 [42][TOP] >UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri RepID=C6K8L9_CAEBE Length = 211 Score = 83.2 bits (204), Expect = 1e-14 Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 8/138 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKL 406 V F I + AI Q+ ++ +SR I++V++ MTP A++ + + ++ +E Sbjct: 75 VFFPDDTKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLE 133 Query: 405 NDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 +++VN T+H VV+T+ K ELL +YK+++ QLP + + DP+A Y+GL RGQVVK Sbjct: 134 AELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193 Query: 243 ISHSGEVFNSLVTYRCVV 190 I E +TYR VV Sbjct: 194 IIRPSETAGRYITYRLVV 211 [43][TOP] >UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1 Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI Length = 205 Score = 83.2 bits (204), Expect = 1e-14 Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 10/141 (7%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415 +++ D I+K+ + + + ++++ + R IL+ ++ +TP+AR ++ +H +E Sbjct: 65 KIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124 Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253 +++VN TKH + LT+ K+ LL++YKI+E +LP + DP+ Y+GL +GQ Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQ 184 Query: 252 VVKISHSGEVFNSLVTYRCVV 190 VVKI E VTYR VV Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205 [44][TOP] >UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis thaliana RepID=O81098_ARATH Length = 205 Score = 82.8 bits (203), Expect = 2e-14 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364 + E + R IL+V+ +TP+AR LE Q A ++ + + V+ P +H VLT Sbjct: 89 MKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVP-EHQVLT 147 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++Y ++E QLP + TDP+A Y+GL+RGQVVKI E VTYR VV Sbjct: 148 TEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205 [45][TOP] >UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO Length = 205 Score = 82.0 bits (201), Expect = 3e-14 Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 10/141 (7%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415 +V+ D +K+ + I + + + + R IL+ ++ +T +AR + +H +E Sbjct: 65 RVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHIIEN 124 Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253 ++++VN TKH V LT KQ LL +Y+++E QLP + DP+A Y+GL RGQ Sbjct: 125 FMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQSADPVARYFGLSRGQ 184 Query: 252 VVKISHSGEVFNSLVTYRCVV 190 VVKI E VTYR VV Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205 [46][TOP] >UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE Length = 207 Score = 82.0 bits (201), Expect = 3e-14 Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 8/119 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E +SR +++V+ MTP A++ L + ++ +E ++++N T+H V++ Sbjct: 89 QRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILEQFVEAELMINITEHELVPEHVLM 148 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 T KQELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR VV Sbjct: 149 TPDEKQELLLRYKLKEHQLPRIQSGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLVV 207 [47][TOP] >UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona intestinalis RepID=UPI000180C3C9 Length = 210 Score = 81.6 bits (200), Expect = 4e-14 Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E + R I++V+ MTP A++ L + ++ +E ++++N T+H VVL Sbjct: 92 QRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPKYILEQFLEQELLINITEHELVPEHVVL 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T K ELL +YK+++ QLP + DP+A Y+GL+RGQVVKI E VTYR V Sbjct: 152 TPEEKSELLTRYKLKDHQLPRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYVTYRLV 209 [48][TOP] >UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S3Q9_TRIAD Length = 210 Score = 81.6 bits (200), Expect = 4e-14 Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVL 367 Q + +E ++R I+I++S MTP A++ L + ++ +E +++++N T KH+V+ Sbjct: 92 QRMQRENINRAIIIIQSGMTPTAKQSLIDMAPKYTLESFMESELMINITEHHLVPKHIVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 + K ELL +YK++E QLP + DP+A YYGL+RGQ V+I E +TYR V Sbjct: 152 SPEEKAELLARYKLKEHQLPRIQVGDPVARYYGLKRGQFVRIIRPSETAGRYITYRLV 209 [49][TOP] >UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9RKM1_RICCO Length = 225 Score = 81.3 bits (199), Expect = 5e-14 Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---ELENCQHAVEIIKLNDVVVNPTKHV------VLT 364 + E + R IL+V+ +TP+AR E+ + H +E+ + ++++VN +HV VLT Sbjct: 109 MKSENVFRAILVVQQSLTPFARTCIAEIASKFH-LEVFQESELLVNIKEHVLVPEHQVLT 167 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++Y ++E QLP + +DP+A YYGL+RGQVVKI E VTYR VV Sbjct: 168 NEEKKTLLERYTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 225 [50][TOP] >UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR Length = 206 Score = 81.3 bits (199), Expect = 5e-14 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364 + E + R IL+V+ +TP+AR LE Q A ++ + + V+ P +H VL+ Sbjct: 90 MKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVP-EHQVLS 148 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++Y ++E QLP + TDP+A YYGL+RGQVVKI E VTYR V+ Sbjct: 149 NEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206 [51][TOP] >UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FGM1_MAIZE Length = 206 Score = 81.3 bits (199), Expect = 5e-14 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 11/134 (8%) Frame = -1 Query: 558 NIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEII 412 N K + I N + + E + IL+V+ ++ +AR LE Q A ++ Sbjct: 74 NEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLV 133 Query: 411 KLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232 + D V+ P +HV+LT K+ LL++Y ++E QLP + TDP+A YYG++RGQVVKI+ + Sbjct: 134 NIKDHVLVP-EHVLLTPEDKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKITRA 192 Query: 231 GEVFNSLVTYRCVV 190 E +TYR VV Sbjct: 193 SETAGRYITYRYVV 206 [52][TOP] >UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L6X3_PLAKH Length = 205 Score = 81.3 bits (199), Expect = 5e-14 Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 10/141 (7%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415 +++ D +K+ + + + ++++ + R IL+ ++ +TP+AR ++ +H +E Sbjct: 65 KIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124 Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253 +++VN TKH + LT+ K+ LL++YKI+E +LP + DP+ Y+GL +GQ Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQ 184 Query: 252 VVKISHSGEVFNSLVTYRCVV 190 VVKI E VTYR VV Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205 [53][TOP] >UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO Length = 204 Score = 80.9 bits (198), Expect = 7e-14 Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 10/116 (8%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENCQ----------HAVEIIKLNDVVVNPTKHVVLTAA 358 E+++R I++V+ +TP+AR+ L CQ A ++ + D V+ P +H++L+ Sbjct: 90 EQVNRAIIVVQQSLTPFARQSLLECQAQKFYIEQFQEAELLVNITDHVLVP-EHILLSDE 148 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL +YK++E QLP + DP+A Y+G+ RGQVV+I E VTYR V Sbjct: 149 QKRVLLDRYKVKETQLPRIQMHDPVARYFGMRRGQVVRIIRPSETAGRYVTYRLCV 204 [54][TOP] >UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PEL2_VITVI Length = 206 Score = 80.9 bits (198), Expect = 7e-14 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364 + E + R IL+V+ +TP+AR LE Q A ++ + + V+ P +H VLT Sbjct: 90 MKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVP-EHQVLT 148 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 + K+ LL++Y ++E QLP + +DP+A Y+GL+RGQVVKI E +TYR VV Sbjct: 149 SEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 206 [55][TOP] >UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8ID59_PLAF7 Length = 205 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 10/141 (7%) Frame = -1 Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415 +++ D ++K+ + + + + ++ + R IL+ ++ +TP+AR ++ +H +E Sbjct: 65 RIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHIIEN 124 Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253 +++VN TKH + LT+ K+ LL++YKI E +LP + DP+ Y+GL +GQ Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDPVCRYFGLSKGQ 184 Query: 252 VVKISHSGEVFNSLVTYRCVV 190 VVKI E VTYR VV Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205 [56][TOP] >UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4LW54_ENTHI Length = 204 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 7/136 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLN 403 +VF K+++ + V E + R I++ K++ ++ +E + E + + Sbjct: 68 IVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLED 127 Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241 +++VN T +H++L+ KQELLKKY+++E QLP +L +DP++ YYG +RG VVKI Sbjct: 128 ELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187 Query: 240 SHSGEVFNSLVTYRCV 193 E VTYR V Sbjct: 188 IRKSETAGRYVTYRAV 203 [57][TOP] >UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative n=1 Tax=Entamoeba dispar SAW760 RepID=B0EA74_ENTDI Length = 204 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 7/136 (5%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLN 403 +VF K+++ + V E + R I++ K++ ++ +E + E + + Sbjct: 68 IVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLED 127 Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241 +++VN T +H++L+ KQELLKKY+++E QLP +L +DP++ YYG +RG VVKI Sbjct: 128 ELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187 Query: 240 SHSGEVFNSLVTYRCV 193 E VTYR V Sbjct: 188 IRKSETAGRYVTYRAV 203 [58][TOP] >UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia vitripennis RepID=UPI00015B5456 Length = 210 Score = 80.5 bits (197), Expect = 9e-14 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E++ R I++V+S MTP A++ L + ++ +E +++++N T+H +VL Sbjct: 92 QRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T K+ELL +YK++E QL + DP+A Y+GL+RGQVVKI E ++YR V Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQANDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [59][TOP] >UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1 Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA Length = 202 Score = 80.5 bits (197), Expect = 9e-14 Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 12/140 (8%) Frame = -1 Query: 576 VFTGTDNIRKSNLTAIHNQIVNKER--LSRLILI-VESKMTPYARKELENCQHA---VEI 415 + T D I + + I I N + ++R I+I E +TP A + L+N + + +E Sbjct: 62 ILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGKTIEF 121 Query: 414 IKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253 ++V++N T KH VLT KQE+LK+Y + E QLP +LRTDP++ Y G++ GQ Sbjct: 122 FSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVKPGQ 181 Query: 252 VVKISHSGEVFNSLVTYRCV 193 ++KI+ + + VTYR V Sbjct: 182 LLKITRNSDTAGHYVTYRLV 201 [60][TOP] >UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E78B Length = 210 Score = 80.1 bits (196), Expect = 1e-13 Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+ Sbjct: 92 QRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPKYILEQFLESELLINITEHELVPEHVVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T KQELL++YK++E QL + DP+A Y+GL+RGQVVKI E ++YR V Sbjct: 152 TPEEKQELLQRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYISYRLV 209 [61][TOP] >UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi RepID=Q4XTK3_PLACH Length = 126 Score = 80.1 bits (196), Expect = 1e-13 Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 8/117 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 ++++ + R IL+ ++ +TP+A+ ++ +H +E +++VN TKH + LT+ Sbjct: 10 MDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTS 69 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++YKI+E +LP + DP+ Y+GL +GQVVKI E VTYR VV Sbjct: 70 DEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLVV 126 [62][TOP] >UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO Length = 210 Score = 80.1 bits (196), Expect = 1e-13 Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+TA Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V Sbjct: 154 EDKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [63][TOP] >UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR Length = 210 Score = 80.1 bits (196), Expect = 1e-13 Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+TA Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V Sbjct: 154 EDKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [64][TOP] >UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN Length = 210 Score = 79.7 bits (195), Expect = 2e-13 Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+TA Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [65][TOP] >UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FSY0_PHATR Length = 228 Score = 79.3 bits (194), Expect = 2e-13 Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 8/119 (6%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPTKHV----- 373 ++ + E +S I+I+ +TP+A++ ++ + +E K ++++V+ TKH Sbjct: 107 VYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHFKESELLVDITKHQLVPVH 166 Query: 372 -VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 VLT K ELLK+Y++++ QLP + DP+A YYG+ RGQVVKI E VTYR Sbjct: 167 QVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYR 225 [66][TOP] >UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio RepID=UPI000056951D Length = 211 Score = 79.0 bits (193), Expect = 3e-13 Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R +++V++ MTP A++ L + ++ +E ++++N T+H +V+ Sbjct: 93 QRMQEENITRAVIVVQTGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 152 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK++E QLP + +DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 153 TKEEVTELLARYKLKETQLPRIQCSDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 210 [67][TOP] >UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus mordax RepID=C1BIS3_OSMMO Length = 210 Score = 79.0 bits (193), Expect = 3e-13 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H +V+ Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 TKEELSELLTRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [68][TOP] >UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01A87_OSTTA Length = 1124 Score = 79.0 bits (193), Expect = 3e-13 Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVNPT------KHVVLT 364 + +E + R I++V++ +TP+A++ L CQ +E + +++VN +H++L+ Sbjct: 1007 MKEENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIVDHVLVPEHILLS 1066 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++YK+++ QLP + DP+A YYG+ RGQVV+I E VTYR V Sbjct: 1067 DEQKRTLLERYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 1124 [69][TOP] >UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C1Q1_THAPS Length = 226 Score = 79.0 bits (193), Expect = 3e-13 Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 9/112 (8%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355 E +S IL++ +TP+A++ LE+ + A ++ + + + P +H+VL+ Sbjct: 113 ENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVP-EHLVLSQNE 171 Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 KQELLK+Y++ E QLP + DP+A YYG++RGQVVKI E VTYR Sbjct: 172 KQELLKRYRLRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYR 223 [70][TOP] >UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio rerio RepID=Q6DEG5_DANRE Length = 210 Score = 78.6 bits (192), Expect = 3e-13 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H +V+ Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [71][TOP] >UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG Length = 210 Score = 78.6 bits (192), Expect = 3e-13 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H +V+ Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [72][TOP] >UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Rana catesbeiana RepID=C1C3Q7_RANCA Length = 210 Score = 78.6 bits (192), Expect = 3e-13 Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H VV+ Sbjct: 92 QRMQEENITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK+ E QLP + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [73][TOP] >UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI Length = 210 Score = 78.6 bits (192), Expect = 3e-13 Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+TA Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHDLVPEHVVMTA 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 KQELL +YK++E L + DP+A Y+GL+RGQVVKI + E ++YR V Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRASETAGRYISYRLV 209 [74][TOP] >UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3 Tax=Murinae RepID=RPAB1_MOUSE Length = 210 Score = 78.6 bits (192), Expect = 3e-13 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376 ++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEH 148 Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196 VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR Sbjct: 149 VVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208 Query: 195 V 193 V Sbjct: 209 V 209 [75][TOP] >UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa n=1 Tax=Pan troglodytes RepID=UPI0000E24E5A Length = 230 Score = 78.2 bits (191), Expect = 4e-13 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376 ++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H Sbjct: 109 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 168 Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196 VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR Sbjct: 169 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 228 Query: 195 V 193 V Sbjct: 229 V 229 [76][TOP] >UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera RepID=UPI00003C0CAC Length = 210 Score = 78.2 bits (191), Expect = 4e-13 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E++ R I++V+ MTP A++ L + ++ +E +++++N T+H +VL Sbjct: 92 QRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T K+ELL +YK++E QL + DP+A Y+GL+RGQVVKI E ++YR V Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [77][TOP] >UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MXV4_9CHLO Length = 206 Score = 78.2 bits (191), Expect = 4e-13 Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 9/115 (7%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVNPTKHVV------LTAAG 355 E + R I++V++ +TP+A++ L C +E + +++VN T+HV+ L+ A Sbjct: 92 ESVFRAIIVVQASLTPFAKQSLLECASQSFYIEQFQEMELLVNITEHVLVPEHVLLSDAE 151 Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL +YK+++ QLP + DP+A YYG+ RGQVV+I E VTYR V Sbjct: 152 KRTLLARYKVKDTQLPRIQLHDPVARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 206 [78][TOP] >UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1 Tax=Theileria annulata RepID=Q4U8E3_THEAN Length = 205 Score = 78.2 bits (191), Expect = 4e-13 Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%) Frame = -1 Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346 + R IL+ ++ +TP+A+ + ++ +E +++VN TKH + LT KQ Sbjct: 94 IHRAILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQN 153 Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 LL+KYK++E Q+P + DP+A Y+GL +GQVVKI E VT+R VV Sbjct: 154 LLQKYKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLVV 205 [79][TOP] >UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva RepID=Q4N141_THEPA Length = 205 Score = 78.2 bits (191), Expect = 4e-13 Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%) Frame = -1 Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346 + R IL+ ++ +TP+A+ + ++ +E +++VN TKH + LT KQ Sbjct: 94 IHRAILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQN 153 Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 LL+KYK++E Q+P + DP+A Y+GL +GQVVKI E VT+R VV Sbjct: 154 LLQKYKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLVV 205 [80][TOP] >UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZQF0_BRAFL Length = 210 Score = 78.2 bits (191), Expect = 4e-13 Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E +SR I++V+ MTP A++ L + ++ +E +++++N T+H VV+ Sbjct: 92 QRMQEENISRAIIVVQMGMTPSAKQALVDMAPKYILEQFLESELLINITEHQLVPEHVVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 T K ELL +Y+++E QLP + DP+A Y+GL+RGQVVKI E ++YR Sbjct: 152 TPEEKAELLARYRLKEHQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYR 207 [81][TOP] >UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AE06_9CRYT Length = 205 Score = 78.2 bits (191), Expect = 4e-13 Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 10/134 (7%) Frame = -1 Query: 561 DNIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVV 394 D +K+ + I + + +++ + R ILI ++ +T +A+ + + +H +E N+++ Sbjct: 72 DESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELL 131 Query: 393 VNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232 VN T KHV+L+ K +LL++YK++E QLP + DP+A Y+GL + QVVKI Sbjct: 132 VNITRHELVPKHVLLSDEEKSQLLERYKVKETQLPRIQHADPVARYFGLAKSQVVKIIRP 191 Query: 231 GEVFNSLVTYRCVV 190 E VTYR VV Sbjct: 192 SETAGRYVTYRLVV 205 [82][TOP] >UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS Length = 210 Score = 78.2 bits (191), Expect = 4e-13 Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 8/116 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+T Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTV 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [83][TOP] >UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME Length = 210 Score = 78.2 bits (191), Expect = 4e-13 Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 8/116 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+T Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTV 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209 [84][TOP] >UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri RepID=A6N9W6_ORNPR Length = 210 Score = 78.2 bits (191), Expect = 4e-13 Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 8/119 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R I++V+ MTP A++ L + ++ +E +++++N T+H VVL Sbjct: 92 QRMQEENITRAIIVVQQGMTPSAKQALTDMAPKYILEYFLESELLINITEHELVPEHVVL 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 T K ELL +YK++E L + DP+A Y+GL+RGQVVKI E ++YR VV Sbjct: 152 TPEEKAELLARYKLKENHLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLVV 210 [85][TOP] >UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Pongo abelii RepID=RPAB1_PONAB Length = 210 Score = 78.2 bits (191), Expect = 4e-13 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376 ++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148 Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196 VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208 Query: 195 V 193 V Sbjct: 209 V 209 [86][TOP] >UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Homo sapiens RepID=RPAB1_HUMAN Length = 210 Score = 78.2 bits (191), Expect = 4e-13 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376 ++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148 Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196 VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208 Query: 195 V 193 V Sbjct: 209 V 209 [87][TOP] >UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Bos taurus RepID=RPAB1_BOVIN Length = 210 Score = 78.2 bits (191), Expect = 4e-13 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376 ++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148 Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196 VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208 Query: 195 V 193 V Sbjct: 209 V 209 [88][TOP] >UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587A08 Length = 210 Score = 77.8 bits (190), Expect = 6e-13 Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R I+ V+ KMTP A+ L + ++ +E ++++N T+H VV+ Sbjct: 92 QRMQEENITRAIITVQEKMTPSAKTSLGDMAPKYILEQFLEAELLINITEHDFVPEHVVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T K ELL +YK+++ QLP + DP+A Y+GL+RGQVVKI E ++YR V Sbjct: 152 TGEEKAELLARYKLKDHQLPRIQVGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [89][TOP] >UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4 RepID=UPI00004E3EE0 Length = 181 Score = 77.8 bits (190), Expect = 6e-13 Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 10/120 (8%) Frame = -1 Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQH----AVEIIKLNDVVVNPT------KHVV 370 I+ + +R I++V+ +TP+A++ L +E +++VN T KH++ Sbjct: 62 IMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHIL 121 Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 LT K ELL +YK++E QLP + DP+A YYGL RG VVKI E +TYR V Sbjct: 122 LTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 181 [90][TOP] >UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus RepID=Q28HF5_XENTR Length = 210 Score = 77.8 bits (190), Expect = 6e-13 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H VV+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK+ E QLP + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [91][TOP] >UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1 Tax=Dictyostelium discoideum RepID=RPAB1_DICDI Length = 197 Score = 77.8 bits (190), Expect = 6e-13 Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 10/120 (8%) Frame = -1 Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQH----AVEIIKLNDVVVNPT------KHVV 370 I+ + +R I++V+ +TP+A++ L +E +++VN T KH++ Sbjct: 78 IMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHIL 137 Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 LT K ELL +YK++E QLP + DP+A YYGL RG VVKI E +TYR V Sbjct: 138 LTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 197 [92][TOP] >UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2 Tax=Neognathae RepID=B5FX59_TAEGU Length = 210 Score = 77.4 bits (189), Expect = 8e-13 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H VV+ Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR V Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209 [93][TOP] >UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2 Tax=Euteleostei RepID=B5X957_SALSA Length = 210 Score = 77.4 bits (189), Expect = 8e-13 Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R ++V+ MTP A++ L + ++ +E ++++N T+H +V+ Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK++E QLP + + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 TKEELSELLLRYKLKESQLPRIQQGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [94][TOP] >UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1 Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE Length = 206 Score = 77.4 bits (189), Expect = 8e-13 Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 8/111 (7%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPTKHV------VLTAAGK 352 E+++R I++ SK TP+A+ LE+ + + +E ++++VN T+HV +L+ K Sbjct: 89 EKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEHFLESELLVNITEHVLVPEHRILSPDEK 148 Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 + LL +YKI+E QLP + +D +A Y GL+RGQVV+I E VTYR Sbjct: 149 RTLLDRYKIKETQLPRIQASDAVARYLGLQRGQVVRIVRPSETAGRYVTYR 199 [95][TOP] >UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium RepID=Q5CNJ4_CRYHO Length = 205 Score = 77.4 bits (189), Expect = 8e-13 Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 10/134 (7%) Frame = -1 Query: 561 DNIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVV 394 D +K+ + I + + +++ + R ILI ++ +T +A+ + + +H +E N+++ Sbjct: 72 DESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELL 131 Query: 393 VNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232 VN TKH ++L+ K +LL +YKI+E QLP + DP+A Y+GL +GQVVKI Sbjct: 132 VNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQYADPVARYFGLAKGQVVKIIRP 191 Query: 231 GEVFNSLVTYRCVV 190 E VTYR VV Sbjct: 192 SETAGRYVTYRLVV 205 [96][TOP] >UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RWP8_OSTLU Length = 205 Score = 77.0 bits (188), Expect = 1e-12 Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 9/115 (7%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVN------PTKHVVLTAAG 355 E + R I++V++ +TP+A++ L CQ +E + +++VN +H++L+ Sbjct: 91 ENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIIDHVLVPEHILLSDDQ 150 Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL +YK+++ QLP + DP+A YYG+ RGQVV+I E VTYR V Sbjct: 151 KRTLLDRYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 205 [97][TOP] >UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI Length = 210 Score = 77.0 bits (188), Expect = 1e-12 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R I++V+ MTP A++ L + ++ +E +++++N T+H +VL Sbjct: 92 QRMQEETITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T KQELL +YK++E QL + DP++ Y+GL+RGQVVKI + E ++YR V Sbjct: 152 TPDEKQELLCRYKLKENQLMRIQVGDPVSRYFGLKRGQVVKIVRNSETAGRYISYRLV 209 [98][TOP] >UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans RepID=Q59PF3_CANAL Length = 179 Score = 77.0 bits (188), Expect = 1e-12 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 + ++ S I I ++ MTP A K + A +EI + ND++VN T KH+ L Sbjct: 64 ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNRE 123 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI E +YR Sbjct: 124 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 176 [99][TOP] >UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida albicans RepID=C4YG42_CANAL Length = 214 Score = 77.0 bits (188), Expect = 1e-12 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 + ++ S I I ++ MTP A K + A +EI + ND++VN T KH+ L Sbjct: 99 ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNRE 158 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI E +YR Sbjct: 159 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211 [100][TOP] >UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Anoplopoma fimbria RepID=C3KI95_9PERC Length = 210 Score = 76.6 bits (187), Expect = 1e-12 Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H +V+ Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 + ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 SKEEVVELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [101][TOP] >UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Esox lucius RepID=C1BZT4_ESOLU Length = 210 Score = 76.6 bits (187), Expect = 1e-12 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R ++V+ MTP A++ L + ++ +E ++++N T+H +V+ Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [102][TOP] >UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Salmo salar RepID=B5X8S7_SALSA Length = 210 Score = 76.6 bits (187), Expect = 1e-12 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + +E ++R ++V+ MTP A++ L + ++ +E ++++N T+H +V+ Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209 [103][TOP] >UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens RepID=B4DJ89_HUMAN Length = 117 Score = 76.6 bits (187), Expect = 1e-12 Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 8/116 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H VV+T Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR V Sbjct: 61 EEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 116 [104][TOP] >UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC Length = 214 Score = 76.6 bits (187), Expect = 1e-12 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 + ++ S I I ++ MTP A K + A +EI + ND++VN T KH+ L Sbjct: 99 ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNHE 158 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI E +YR Sbjct: 159 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211 [105][TOP] >UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D56A05 Length = 210 Score = 75.9 bits (185), Expect = 2e-12 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 8/118 (6%) Frame = -1 Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367 Q + E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+ Sbjct: 92 QRMQDENIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVM 151 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 T KQELL +YK++E L + DP+A Y+GL+RGQVVKI E ++YR V Sbjct: 152 TPEEKQELLTRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [106][TOP] >UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae RepID=B0X7A5_CULQU Length = 210 Score = 75.9 bits (185), Expect = 2e-12 Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 8/116 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 + +E + R I++V++ MTP A++ L + ++ +E +++++N T+H VV+T Sbjct: 94 MQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTP 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 KQELL +YK++E L + DP+A Y+GL+RGQVVKI E ++YR V Sbjct: 154 EEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209 [107][TOP] >UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7APR4_BABBO Length = 205 Score = 75.5 bits (184), Expect = 3e-12 Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 8/111 (7%) Frame = -1 Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346 + R IL+ ++ +TP+A+ + ++ +E +++VN TKH + LTA KQ Sbjct: 94 IHRAILVTQNVLTPFAKDAILEAAPRNIIENFLETELLVNITKHELVPKHIPLTADEKQT 153 Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 LL++YK++E Q+P + DP+A Y+GL +GQVVKI E VT+R V Sbjct: 154 LLQRYKVKESQIPRIQAADPVARYFGLTKGQVVKIIRPSETAGRYVTFRLV 204 [108][TOP] >UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JZQ6_SCHJY Length = 211 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 8/105 (7%) Frame = -1 Query: 489 ILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334 ILI + MTP A K + Q +E + +D++VN T KHV+LT K+ELL + Sbjct: 104 ILIYANNMTPSATKIISTVTGQFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDR 163 Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 YK+ E QLP + DP+A Y GL+RGQVVKI E +YR Sbjct: 164 YKLRETQLPRIQMADPVARYLGLKRGQVVKIVRRSETSGRYNSYR 208 [109][TOP] >UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG Length = 214 Score = 75.1 bits (183), Expect = 4e-12 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAA 358 + ++ S I I ++ +TP A K + A+ E + +D+VVN T KH+ L+ Sbjct: 99 IQEKNFSTGIFIYQNNITPSANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLSDG 158 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K +LL++YK++E QLP + R DP+A Y GL+RGQVVKI E +YR Sbjct: 159 EKSQLLQRYKLKESQLPRIQREDPVARYLGLKRGQVVKIIRRSETSGRYASYR 211 [110][TOP] >UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Yarrowia lipolytica RepID=RPAB1_YARLI Length = 212 Score = 75.1 bits (183), Expect = 4e-12 Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPTKHVV------LTAA 358 +++ + + IL+ E+ MTP A + + + A ++ + D++VN TKHV+ L+ A Sbjct: 97 ISENKFATGILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGA 156 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ LL++Y+++E QLP + R DP+A Y GL RGQ+VKI E +YR Sbjct: 157 EKKFLLERYRLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209 [111][TOP] >UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XUF8_ORYSJ Length = 205 Score = 74.7 bits (182), Expect = 5e-12 Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364 + +E + IL+V+ ++ +AR LE Q A ++ + D + P +H +LT Sbjct: 89 MKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVP-EHELLT 147 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++Y ++E QLP + TDP+A YYG++RGQVVKI + E VTYR VV Sbjct: 148 PEQKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYVV 205 [112][TOP] >UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia theta RepID=Q98RN7_GUITH Length = 214 Score = 74.3 bits (181), Expect = 6e-12 Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 9/118 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKL---NDVVVNPT------KHVVLT 364 + E SR+++I+ K+TP+A++ + + ++I+ N+++VN T KH +L+ Sbjct: 97 IKNEGFSRVLMILNGKLTPHAKQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILS 156 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 + LL++Y I+ LP +L+ DP+A Y GL+R ++VKI+ E +TYR + Sbjct: 157 KNESKSLLERYSIKFDHLPKILKNDPVAKYLGLQRSEIVKITRVSETSGKFITYRICI 214 [113][TOP] >UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4 Length = 287 Score = 74.3 bits (181), Expect = 6e-12 Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 ++++ S I I ++ +TP A K + A +E+ + +D+VVN T KH+ L+ Sbjct: 172 ISEKNFSTGIFIYQTSITPSANKLIPTVSPATIEVFQESDLVVNITHHELVPKHIRLSKP 231 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ELL +Y+++E QLP + R DP+A Y GL+RG VVKI E +YR Sbjct: 232 EKKELLDRYRLKESQLPRIQREDPVARYLGLKRGDVVKIIRRSETSGRYASYR 284 [114][TOP] >UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LR68_PICSI Length = 194 Score = 73.9 bits (180), Expect = 8e-12 Identities = 43/109 (39%), Positives = 65/109 (59%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVVVNPTKHVVLTAAGKQELLK 337 + E + R IL+V+ + + + LE Q A ++ + + V+ P + + LT K+ LL+ Sbjct: 89 MKSEGVFRAILVVQQEFS--GKFHLEVFQEAELLVNIKEHVLVPEQQI-LTPEEKKTLLE 145 Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 +Y ++E QLP M +DP+A YYGL+RGQVVKI E VTYR VV Sbjct: 146 RYTLKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 194 [115][TOP] >UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z7I7_NECH7 Length = 234 Score = 73.6 bits (179), Expect = 1e-11 Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 8/108 (7%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334 I++ ++P ARK L + + +E +D++VN T KHV+L+ K LLK+ Sbjct: 127 IMVTHVPLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKR 186 Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 Y+++E QLP +L+ DP+A Y GL+RGQVVKI + E +YR V Sbjct: 187 YRLKETQLPRILQRDPVARYLGLKRGQVVKIIRNSETAGRYASYRLCV 234 [116][TOP] >UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL Length = 179 Score = 73.6 bits (179), Expect = 1e-11 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 7/104 (6%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331 I I ++ +TP A K + Q A +E + D++VN T KH+ L K+ELL++Y Sbjct: 73 IFIYQNSITPSANKLIPTVQPASIETFQETDLIVNITHHELVPKHIKLNREEKKELLERY 132 Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 +++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176 [117][TOP] >UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia guilliermondii RepID=A5DHL4_PICGU Length = 179 Score = 73.2 bits (178), Expect = 1e-11 Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 ++++ S I I ++ +TP A K + A +E + +D++VN T KH+ L+ Sbjct: 64 ISEKNFSTGIFIYQNSITPSANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIKLSIG 123 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ELL +Y+++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 124 EKKELLARYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176 [118][TOP] >UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST Length = 213 Score = 73.2 bits (178), Expect = 1e-11 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 ++++ S I I ++ +TP A K + A +E + D+VVN T KH+ L+ Sbjct: 98 ISEKNFSTGIFIYQNSITPSANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSRD 157 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ELL +Y+++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 158 EKKELLDRYRLKESQLPRVQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 210 [119][TOP] >UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA Length = 214 Score = 73.2 bits (178), Expect = 1e-11 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 ++++ S I I +S +TP A K + A +E + D+VVN T KH+ L Sbjct: 99 ISEKNFSTGIFIYQSSITPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARD 158 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ELL++Y+++E QLP + R DP+ Y GL+RG+VVKI E +YR Sbjct: 159 EKKELLERYRLKESQLPRIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211 [120][TOP] >UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Kluyveromyces lactis RepID=RPAB1_KLULA Length = 215 Score = 72.8 bits (177), Expect = 2e-11 Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 7/104 (6%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331 I I +S +TP A K L AV E +VVN T KH+ L+ A K+ELLK+Y Sbjct: 109 IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRY 168 Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 +++E QLP + R DP+A Y GL+RG+V+KI E +YR Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212 [121][TOP] >UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D9Y7_LACBS Length = 208 Score = 72.4 bits (176), Expect = 2e-11 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 8/115 (6%) Frame = -1 Query: 519 IVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHV------VLT 364 I+ ++ + R I++ MTP ARK + Q+ +E D++VN H VL+ Sbjct: 91 ILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYRLEEFSEADLLVNIVHHTLVPRHDVLS 150 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ LL+KY+++E QLP + DP+A YYGL RGQVVKI+ E +YR Sbjct: 151 PDEKKTLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVKITRPSETSGRYASYR 205 [122][TOP] >UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA Length = 215 Score = 72.4 bits (176), Expect = 2e-11 Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 7/104 (6%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331 I I +S +TP A K L AV E +VVN T KH+ L+ A K+ELLK+Y Sbjct: 109 IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRY 168 Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 +++E QLP + R DP+A Y GL+RG+V+KI E +YR Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212 [123][TOP] >UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MBX4_CANTT Length = 214 Score = 72.0 bits (175), Expect = 3e-11 Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAA 358 + ++ S + I ++ +TP A K + +V EI + +D++VN T KH+ L+ Sbjct: 99 ITEKNFSTGLFIYQNSITPSANKLIPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSKD 158 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K ELL++Y+++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 159 EKVELLERYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211 [124][TOP] >UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum canis CBS 113480 RepID=C5FC74_NANOT Length = 236 Score = 72.0 bits (175), Expect = 3e-11 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 11/136 (8%) Frame = -1 Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403 GT +IR NQ ++++ I I +S ++P A + L C+H +E Sbjct: 110 GTKHIRA------FNQFIDQQNYHAGIFITQSPISPSAIRLLTAIPGRFCEHFLE----Q 159 Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241 +++VN T KH++L+A K++LL++Y+++E QLP + DP+A Y GL RGQVVKI Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219 Query: 240 SHSGEVFNSLVTYRCV 193 E +YR V Sbjct: 220 IRKSETAGRYASYRWV 235 [125][TOP] >UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8M3B9_TALSN Length = 236 Score = 72.0 bits (175), Expect = 3e-11 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENCQ-HAVEIIKLNDVVVNPT------KHVVL 367 N +V++ I I + ++P A + L + H E + +D++VN T KHV+L Sbjct: 118 NHLVDEGNYHSGIFITRTAISPSAMRLLSSAVGHICEHFQESDLLVNITHHELVPKHVLL 177 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 +A K LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR V+ Sbjct: 178 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 236 [126][TOP] >UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QBA8_PENMQ Length = 172 Score = 71.2 bits (173), Expect = 5e-11 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKLNDVVVNPT------KHVVL 367 N +V++ I I + ++P A + L + H E + +D++VN T KHV+L Sbjct: 54 NHLVDEGNYHSGIFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLL 113 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 +A K LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR V+ Sbjct: 114 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 172 [127][TOP] >UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QBA7_PENMQ Length = 236 Score = 71.2 bits (173), Expect = 5e-11 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKLNDVVVNPT------KHVVL 367 N +V++ I I + ++P A + L + H E + +D++VN T KHV+L Sbjct: 118 NHLVDEGNYHSGIFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLL 177 Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 +A K LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR V+ Sbjct: 178 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 236 [128][TOP] >UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO Length = 210 Score = 71.2 bits (173), Expect = 5e-11 Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 8/105 (7%) Frame = -1 Query: 489 ILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334 ILI + MTP A K + Q +E + +D++VN T KH++L+ K+ELL + Sbjct: 103 ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDR 162 Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 YK+ E QLP + DP+A Y GL+RG+VVKI E +YR Sbjct: 163 YKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYR 207 [129][TOP] >UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE Length = 210 Score = 70.5 bits (171), Expect = 9e-11 Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 8/117 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361 + +E + R I++V++ +TP AR+ L ++ +E +++ N T+ HVV+T Sbjct: 94 MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 KQELL +YK+ E L + DP++ Y+GL+ GQVVKI S + ++YR VV Sbjct: 154 DEKQELLSRYKLRESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKTAGRYISYRIVV 210 [130][TOP] >UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5E0K0_DROPS Length = 210 Score = 70.1 bits (170), Expect = 1e-10 Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 8/117 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361 + +E + R I++V++ +TP AR+ L ++ +E +++ N T+ HVV+T Sbjct: 94 MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 KQELL +YK++E L + DP++ Y+GL+ GQVVKI S + ++YR VV Sbjct: 154 DEKQELLSRYKLKESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKSAGRYISYRIVV 210 [131][TOP] >UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides RepID=C5PAC2_COCP7 Length = 236 Score = 70.1 bits (170), Expect = 1e-10 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N V+++ I I +S ++P A + L C+H +E +++VN T K Sbjct: 118 NHFVDEQNYHTGIFITQSPISPSAIRLLTGIPGRFCEHFLE----QELLVNITHHELVPK 173 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233 Query: 198 CV 193 V Sbjct: 234 WV 235 [132][TOP] >UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023E584 Length = 253 Score = 69.7 bits (169), Expect = 2e-10 Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 8/105 (7%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334 I+I ++P AR+ L + + +E +D++VN T KHV+L+ K LLK+ Sbjct: 131 IMITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKR 190 Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 Y+++E QLP +L+ DP+A Y GL+RG VVKI + E +YR Sbjct: 191 YRLKETQLPRILQKDPVARYLGLKRGHVVKIIRNSETAGRYASYR 235 [133][TOP] >UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HAG0_PENCW Length = 234 Score = 69.7 bits (169), Expect = 2e-10 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 11/123 (8%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N +V++ I I ++ ++P A + L C+H E D++VN T K Sbjct: 116 NHLVDENNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQE----QDLLVNITRHELVPK 171 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+ K +LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR Sbjct: 172 HVLLSPEEKAKLLERYRLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231 Query: 198 CVV 190 V+ Sbjct: 232 WVI 234 [134][TOP] >UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEH4_VANPO Length = 215 Score = 69.3 bits (168), Expect = 2e-10 Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 7/104 (6%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331 I + ++ +TP A K + + A +E ++VN T KH+ L+ K+ELLKKY Sbjct: 109 IFVYQTNVTPSAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKY 168 Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 +++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 [135][TOP] >UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Eremothecium gossypii RepID=RPAB1_ASHGO Length = 215 Score = 69.3 bits (168), Expect = 2e-10 Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 7/104 (6%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331 I I ++ +TP A K L + A +E +VVN T KH+ L+ K+ELLK+Y Sbjct: 109 IFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168 Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 +++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 [136][TOP] >UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5DLP1_DROPS Length = 320 Score = 68.9 bits (167), Expect = 3e-10 Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 8/111 (7%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPTKH------VVLTAAGK 352 E + R IL+V +TP A++ + + +E +++ +N TKH VVL+ K Sbjct: 97 EGIHRAILVVRDCLTPPAKQSIMAMAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEK 156 Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 ++L + Y+++E Q+ ML +DP+A YYGL+ GQVVKI + E ++YR Sbjct: 157 KQLFRCYRLKESQMMRMLSSDPVARYYGLKPGQVVKIVRASESAGKYISYR 207 [137][TOP] >UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus RepID=Q6MY78_ASPFU Length = 220 Score = 68.9 bits (167), Expect = 3e-10 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N V++ + I ++ ++P A + L C+H E D++VN T K Sbjct: 102 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 157 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+ K+ LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR Sbjct: 158 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 217 Query: 198 CVV 190 V+ Sbjct: 218 WVI 220 [138][TOP] >UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S900_9PEZI Length = 231 Score = 68.9 bits (167), Expect = 3e-10 Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 8/105 (7%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334 I++ S +T RK+L + + +E D++VN T KH++L+ K LLK+ Sbjct: 124 IMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKR 183 Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 Y+++E QLP + R DP+A Y GL+RG VVKI + E +YR Sbjct: 184 YRLKETQLPRIKREDPVARYLGLKRGNVVKIIRNSETAGRYASYR 228 [139][TOP] >UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1GUJ0_PARBA Length = 236 Score = 68.9 bits (167), Expect = 3e-10 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N ++++ I I ++ ++P A + L + C+H E +++VN T K Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 H++L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR Sbjct: 174 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233 Query: 198 CV 193 V Sbjct: 234 WV 235 [140][TOP] >UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1FYH2_PARBD Length = 236 Score = 68.9 bits (167), Expect = 3e-10 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N ++++ I I ++ ++P A + L + C+H E +++VN T K Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 H++L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR Sbjct: 174 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233 Query: 198 CV 193 V Sbjct: 234 WV 235 [141][TOP] >UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0S407_PARBP Length = 171 Score = 68.9 bits (167), Expect = 3e-10 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N ++++ I I ++ ++P A + L + C+H E +++VN T K Sbjct: 53 NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 108 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 H++L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR Sbjct: 109 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 168 Query: 198 CV 193 V Sbjct: 169 WV 170 [142][TOP] >UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VUN9_PYRTR Length = 235 Score = 68.9 bits (167), Expect = 3e-10 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 13/143 (9%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-------QHAV 421 V F +N+ L +VN S +++ V+ MT A + L + V Sbjct: 94 VEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKP-MTGMAIRLLRGATSLSDGPKGGV 152 Query: 420 EIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLER 259 E+ D++VN TKH V+L+ KQ+LL++Y++++ QLP + TDP+A Y GL R Sbjct: 153 EVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLRR 212 Query: 258 GQVVKISHSGEVFNSLVTYRCVV 190 G VVKI E +YR V+ Sbjct: 213 GSVVKIIRKSETAGRYASYRWVI 235 [143][TOP] >UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus RepID=B0XMP1_ASPFC Length = 171 Score = 68.9 bits (167), Expect = 3e-10 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N V++ + I ++ ++P A + L C+H E D++VN T K Sbjct: 53 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 108 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+ K+ LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR Sbjct: 109 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 168 Query: 198 CVV 190 V+ Sbjct: 169 WVI 171 [144][TOP] >UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D205_NEOFI Length = 234 Score = 68.9 bits (167), Expect = 3e-10 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N V++ + I ++ ++P A + L C+H E D++VN T K Sbjct: 116 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 171 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+ K+ LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR Sbjct: 172 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231 Query: 198 CVV 190 V+ Sbjct: 232 WVI 234 [145][TOP] >UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus RepID=A1CP51_ASPCL Length = 234 Score = 68.9 bits (167), Expect = 3e-10 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N V++ + I ++ ++P A + L C+H E D++VN T K Sbjct: 116 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 171 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+ K+ LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR Sbjct: 172 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231 Query: 198 CVV 190 V+ Sbjct: 232 WVI 234 [146][TOP] >UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5 Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST Length = 215 Score = 68.9 bits (167), Expect = 3e-10 Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 7/104 (6%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331 I + ++ +TP A K + + A +E +VVN T KH+ L++ K+ELLK+Y Sbjct: 109 IFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168 Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 +++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 [147][TOP] >UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH Length = 210 Score = 68.6 bits (166), Expect = 4e-10 Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 8/114 (7%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELE--NCQHAVEIIKLNDVVVNPTKH------VVLTAAGK 352 +++ R I++V +T AR + N +E+ + ++V N T+H VL K Sbjct: 97 DKVHRGIVVVPMAITAPARMAVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAK 156 Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 ++LL Y +++ QLP +L TDP+A YYGL+RGQVVKI S TYR V Sbjct: 157 KKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYRFAV 210 [148][TOP] >UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN Length = 219 Score = 68.6 bits (166), Expect = 4e-10 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 11/137 (8%) Frame = -1 Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403 GT +R N T V++ I I ++ ++P A + L C+H E Sbjct: 93 GTKQVRAFNHT------VDEHNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQE----Q 142 Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241 D++VN T KHV+L+ K+ LL +Y+++E QLP + +DP+A Y GL RGQVVKI Sbjct: 143 DLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 202 Query: 240 SHSGEVFNSLVTYRCVV 190 E +YR V+ Sbjct: 203 IRKSETAGRYASYRWVI 219 [149][TOP] >UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces dermatitidis RepID=C5G7M7_AJEDR Length = 236 Score = 68.6 bits (166), Expect = 4e-10 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N ++++ I I ++ ++P A + L + C+H E +++VN T K Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAIRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233 Query: 198 CV 193 V Sbjct: 234 WV 235 [150][TOP] >UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus RepID=C0NL28_AJECG Length = 236 Score = 68.6 bits (166), Expect = 4e-10 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N ++++ I + ++ ++P A + L + C+H E +++VN T K Sbjct: 118 NHFIDEQNYHTGIFVSQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYR 233 Query: 198 CV 193 V Sbjct: 234 WV 235 [151][TOP] >UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357 RepID=B8N6W2_ASPFN Length = 171 Score = 68.6 bits (166), Expect = 4e-10 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N +V++ + I ++ ++P A + L C+H E D++VN T K Sbjct: 53 NHVVDENNFHTGVFITQTPISPSAVRLLSGVPGRICEHFQE----QDLLVNITRHELVPK 108 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+ K +LL +Y+++E QLP + +DP+A Y GL RGQVVKI E +YR Sbjct: 109 HVLLSPEEKAKLLARYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYR 168 Query: 198 CVV 190 V+ Sbjct: 169 WVI 171 [152][TOP] >UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN Length = 236 Score = 68.6 bits (166), Expect = 4e-10 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N ++++ I + ++ ++P A + L + C+H E +++VN T K Sbjct: 118 NHFIDEQNYHTGIFVSQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYR 233 Query: 198 CV 193 V Sbjct: 234 WV 235 [153][TOP] >UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE Length = 210 Score = 68.2 bits (165), Expect = 5e-10 Identities = 38/140 (27%), Positives = 77/140 (55%), Gaps = 11/140 (7%) Frame = -1 Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKEL-----ENCQHAVEI 415 V F + +++ + + ++++++ + L R I++ + K+ P A+ + E+ + VE Sbjct: 68 VFFPESPDVKVAAIKSLYDRL-KSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVET 126 Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253 ++V N T+H +L + KQ+LL++Y + E +LP + DP+ Y+G ++GQ Sbjct: 127 FAEAELVYNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLPQIQPNDPVCRYFGAQKGQ 186 Query: 252 VVKISHSGEVFNSLVTYRCV 193 V++I S + VTYR V Sbjct: 187 VLRIVRSSQTAGRYVTYRIV 206 [154][TOP] >UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2 Tax=Emericella nidulans RepID=C8VQY1_EMENI Length = 235 Score = 68.2 bits (165), Expect = 5e-10 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 11/137 (8%) Frame = -1 Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403 GT +R N T V++ I I ++ ++P A + L C+H E Sbjct: 109 GTKQVRTFNHT------VDEGNFHTGIFITKTPISPSAVRLLSGIPGRICEHFQE----Q 158 Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241 D++VN T KHV+L+ K +LL++Y+++E QLP + +DP+A Y GL RGQVVKI Sbjct: 159 DLLVNITRHELVPKHVLLSPEEKSKLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 218 Query: 240 SHSGEVFNSLVTYRCVV 190 E +YR V+ Sbjct: 219 IRKSETAGRYASYRWVI 235 [155][TOP] >UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE Length = 239 Score = 68.2 bits (165), Expect = 5e-10 Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 11/122 (9%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N V+++ I I +S ++P A + L C+H +E +++VN T K Sbjct: 121 NHFVDEQNYHTGIFITQSPISPSAVRLLTGIPGRFCEHFLE----QELLVNITHHELVPK 176 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 H++L+A K+ LL +Y+++E QLP + DP+A Y GL RGQVVKI E +YR Sbjct: 177 HLLLSAEEKKRLLHRYRLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 236 Query: 198 CV 193 V Sbjct: 237 WV 238 [156][TOP] >UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) = Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QAL5_ASPNC Length = 235 Score = 67.8 bits (164), Expect = 6e-10 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Frame = -1 Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379 N V++ + I ++ ++P A + L + C+H E D++VN T K Sbjct: 117 NHFVDENNFHTGVFITQTPISPSAVRLLSSMPGRICEHFQE----QDLLVNITRHELVPK 172 Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 HV+L+ K LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR Sbjct: 173 HVLLSPDEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYR 232 Query: 198 CVV 190 V+ Sbjct: 233 WVI 235 [157][TOP] >UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Candida glabrata RepID=RPAB1_CANGA Length = 215 Score = 67.8 bits (164), Expect = 6e-10 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 + +++ I I ++ +TP A K + + A +E +VVN T KH+ L Sbjct: 100 IQEKQFQTGIFIYQNNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEE 159 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K ELLK+Y+++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 160 EKAELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212 [158][TOP] >UniRef100_Q24FV0 RNA polymerase Rpb5, C-terminal domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q24FV0_TETTH Length = 275 Score = 67.4 bits (163), Expect = 8e-10 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 6/82 (7%) Frame = -1 Query: 420 EIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLER 259 EI +D+V+N TKH V L A K++L+ KYKI + QLP +L TDP+ Y+GL Sbjct: 193 EIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFGLRT 252 Query: 258 GQVVKISHSGEVFNSLVTYRCV 193 QV KI E +TYR V Sbjct: 253 KQVFKIERDSETAGKYITYRIV 274 [159][TOP] >UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DNB3_LACTC Length = 215 Score = 67.4 bits (163), Expect = 8e-10 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 7/113 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358 ++++ I + ++ +TP A K L + A +E +VVN T KH+ L+ Sbjct: 100 ISEKNFQTGIFVYQNGVTPSAMKLLPSVAPATIETFHEASLVVNITHHELVPKHIKLSDE 159 Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ELL++Y+++E QLP + R DP+A Y GL+RG VVKI E +YR Sbjct: 160 EKKELLRRYRLKESQLPRIQRMDPVALYLGLKRGDVVKIIRKSETSGRYASYR 212 [160][TOP] >UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DR69_ZYGRC Length = 215 Score = 67.0 bits (162), Expect = 1e-09 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 7/104 (6%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331 I + ++ +TP A K + + A +E +VVN T KH+ + K+ELLK+Y Sbjct: 109 IFVYQNNVTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRY 168 Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 +++E QLP + R DP+A Y GL+RG+VVKI E +YR Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212 [161][TOP] >UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4QW70_MAGGR Length = 259 Score = 67.0 bits (162), Expect = 1e-09 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 9/106 (8%) Frame = -1 Query: 489 ILIVESKMTPYARKELE---NCQHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLK 337 IL+ + ++ AR+ L + + VE L D++VN T KHV+L+ K+ LL+ Sbjct: 122 ILVTQGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLE 181 Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 +Y+++E QLP + DP+A Y GL+RG VVKI E +YR Sbjct: 182 RYRLKETQLPRIQTKDPVARYLGLQRGNVVKIIRHSETAGRYASYR 227 [162][TOP] >UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NU15_COPC7 Length = 273 Score = 66.6 bits (161), Expect = 1e-09 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 8/115 (6%) Frame = -1 Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPT------KHVVLT 364 I+ ++ + R I+I + MT ARK + + +E D++VN T +H VL+ Sbjct: 156 IMEEKAIQRGIIIFPATMTSSARKVISAMASTYRLEEFAEADLLVNITHHTLVPRHEVLS 215 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 K+ LL++Y++++ QLP + DP+A YYGL RGQVVKI E +YR Sbjct: 216 PEEKKTLLERYRLKDTQLPRIQPMDPVARYYGLRRGQVVKIIRPSETSGRYASYR 270 [163][TOP] >UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RKX0_PLAYO Length = 112 Score = 66.2 bits (160), Expect = 2e-09 Identities = 33/99 (33%), Positives = 62/99 (62%), Gaps = 8/99 (8%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361 ++++ + R IL+ ++ +TP+A+ ++ +H +E +++VN TKH + LT+ Sbjct: 10 MDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTS 69 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244 K+ LL++YKI+E +LP + DP+ Y+GL +GQV K Sbjct: 70 DEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVQK 108 [164][TOP] >UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=A3AV22_ORYSJ Length = 217 Score = 65.9 bits (159), Expect = 2e-09 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 21/130 (16%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364 + +E + IL+V+ ++ +AR LE Q A ++ + D + P +H +LT Sbjct: 89 MKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVP-EHELLT 147 Query: 363 AAGKQELLKKYKIEEKQ------------LPHMLRTDPMASYYGLERGQVVKISHSGEVF 220 K+ LL++Y ++E Q LP + TDP+A YYG++RGQVVKI + E Sbjct: 148 PEQKKTLLERYTVKETQILSLTQLVKCVNLPRIQITDPIARYYGMKRGQVVKIIRASETA 207 Query: 219 NSLVTYRCVV 190 VTYR VV Sbjct: 208 GRYVTYRYVV 217 [165][TOP] >UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H038_CHAGB Length = 220 Score = 65.9 bits (159), Expect = 2e-09 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 8/108 (7%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334 IL+ ++ ARK + +E D++VN T KHV+L+ K LLK+ Sbjct: 113 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKR 172 Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 Y+++E QLP +L DP+A Y GL++GQVVKI + E +YR V Sbjct: 173 YRLKETQLPRILSKDPIARYLGLKKGQVVKIIRTSETAGRYASYRLCV 220 [166][TOP] >UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major RepID=Q4QDW4_LEIMA Length = 239 Score = 65.5 bits (158), Expect = 3e-09 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 11/117 (9%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361 E R++ + SK P RK ++ + E+ + +++ VN T KH L+ Sbjct: 123 EGYQRIVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSE 182 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 +++L + +E QLP +L TDP+A YYGL RGQVV+I VTYR VV Sbjct: 183 EELRDVLHAHALELNQLPRILSTDPVARYYGLRRGQVVRIERKSMSAGLYVTYRQVV 239 [167][TOP] >UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP Length = 216 Score = 65.5 bits (158), Expect = 3e-09 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 9/115 (7%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARK---ELENCQHAVEIIKLNDVVVNPT------KHVVLT 364 + ++ I+++ K+T +A++ + + +E ++++VN T KH +++ Sbjct: 98 IKQDGFQNSIIVLHGKLTSHAKQAINSINSLDDKIEYFSESELIVNITEHNLVPKHEIIS 157 Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199 + L K+Y I E QLP + + DP+A Y+GL++ Q++KI S E VTYR Sbjct: 158 EEEARCLFKRYSIRENQLPRINKRDPIARYFGLQKNQIMKIIRSSETSGRYVTYR 212 [168][TOP] >UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR Length = 234 Score = 65.5 bits (158), Expect = 3e-09 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 8/108 (7%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334 I I ++ ARK + VE D++VN T KHV+L+ K LLK+ Sbjct: 127 IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKR 186 Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 Y+++E QLP +L DP+A Y GL+RGQVVKI E +YR V Sbjct: 187 YRLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234 [169][TOP] >UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0UZB4_PHANO Length = 277 Score = 65.5 bits (158), Expect = 3e-09 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%) Frame = -1 Query: 423 VEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262 +E+ D++VN TKH V+L+A K +LL +Y+++E QLP + TDP+A + GL Sbjct: 194 IEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLTRYRLKETQLPRIQSTDPVAKFLGLR 253 Query: 261 RGQVVKISHSGEVFNSLVTYRCVV 190 RG VVKI E +YR V+ Sbjct: 254 RGSVVKIIRKSETAGRYASYRWVI 277 [170][TOP] >UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania braziliensis RepID=A4H9I9_LEIBR Length = 239 Score = 65.1 bits (157), Expect = 4e-09 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 11/117 (9%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361 E R++ + SK P RK ++ + E+ + +++ VN T KH L+ Sbjct: 123 EGYQRVVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSE 182 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 +++L + +E QLP +L TDP+A YYGL+RGQVV+I VTYR VV Sbjct: 183 EELKDVLHAHALELHQLPRILSTDPVARYYGLKRGQVVRIERKSMSAGLYVTYRQVV 239 [171][TOP] >UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi RepID=Q8T1Q5_TRYCR Length = 219 Score = 64.7 bits (156), Expect = 5e-09 Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%) Frame = -1 Query: 564 TDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLND 400 ++ + + H Q ++ R+I++V+ ++ ++ +E+ + +++ +D Sbjct: 85 SEGLSMETMKRYHTQ-ASEANCDRVIIVVQGRINAIVKRHVEDINRSSLGLKIQLFDEDD 143 Query: 399 VVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 +VVN T KH L +E+L+ + +E LP +L TDP+A+Y GLERG+VV+I Sbjct: 144 LVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRILSTDPVAAYLGLERGRVVRIE 203 Query: 237 HSGEVFNSLVTYRCVV 190 VTYR VV Sbjct: 204 RKSMSAGFYVTYRQVV 219 [172][TOP] >UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania infantum RepID=A4HXV2_LEIIN Length = 239 Score = 64.7 bits (156), Expect = 5e-09 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 11/117 (9%) Frame = -1 Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361 E R++ + SK P RK ++ + E+ + +++ VN T KH L+ Sbjct: 123 EGYQRVVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHSPLSE 182 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 ++L+ + +E QLP +L TDP+A YYGL+RGQVV+I VTYR VV Sbjct: 183 EELTDVLQAHALELNQLPRILSTDPVARYYGLKRGQVVRIERKSMSAGLYVTYRQVV 239 [173][TOP] >UniRef100_A2DEU9 RNA polymerase Rpb5, C-terminal domain containing protein n=1 Tax=Trichomonas vaginalis G3 RepID=A2DEU9_TRIVA Length = 217 Score = 64.7 bits (156), Expect = 5e-09 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%) Frame = -1 Query: 453 RKELENCQHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRT 292 +K+L +E L ++ N T KH VL+ K EL +YKI+E +LP +L T Sbjct: 124 KKQLRLIGKKLETFTLQELQYNITMHFFVPKHKVLSNEEKNELFNRYKIDETKLPQILST 183 Query: 291 DPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 DP+ YYG + G +++I+ E +VTYR V+ Sbjct: 184 DPVVRYYGADPGAIIEITRRSETCGRVVTYRLVI 217 [174][TOP] >UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina RepID=B2AZ24_PODAN Length = 235 Score = 64.3 bits (155), Expect = 7e-09 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 8/108 (7%) Frame = -1 Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPTKH------VVLTAAGKQELLKK 334 IL+ ++ ARK + +E D++VN T H ++L+ K LLK+ Sbjct: 128 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKR 187 Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 Y+++E QLP +L+ DP+A Y GL+RGQVVKI E +YR V Sbjct: 188 YRLKETQLPRILQKDPIARYLGLKRGQVVKIVRISETAGRYASYRLCV 235 [175][TOP] >UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E n=1 Tax=Macaca mulatta RepID=UPI0000D9E960 Length = 278 Score = 63.5 bits (153), Expect = 1e-08 Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 8/101 (7%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376 ++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148 Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253 VV+T ELL +YK+ E QLP + DP+A Y+G++RGQ Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQ 189 [176][TOP] >UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E isoform 1 n=1 Tax=Canis lupus familiaris RepID=UPI00005A3E0E Length = 208 Score = 63.5 bits (153), Expect = 1e-08 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 8/121 (6%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376 ++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148 Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196 VV+T ELL +YK+ E QLP + D A Y+G + +VVKI E +TYR Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFG--KSEVVKIIRPSETAGRYITYRL 206 Query: 195 V 193 V Sbjct: 207 V 207 [177][TOP] >UniRef100_Q4YN14 Putative uncharacterized protein n=1 Tax=Plasmodium berghei RepID=Q4YN14_PLABE Length = 117 Score = 63.5 bits (153), Expect = 1e-08 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 6/75 (8%) Frame = -1 Query: 396 VVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISH 235 VVN TKH + LT+ K+ LL++YKI+E +LP + DP+ Y+GL +GQVVKI Sbjct: 16 VVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIR 75 Query: 234 SGEVFNSLVTYRCVV 190 E VTYR V+ Sbjct: 76 PSETAGRYVTYRLVM 90 [178][TOP] >UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA polymerases I, II, and III subunit ABC1) (DNA-directed RNA polymerase II subunit E) (RPB5) (DNA-directed RNA polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB19D6 Length = 212 Score = 63.2 bits (152), Expect = 1e-08 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 10/123 (8%) Frame = -1 Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376 ++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148 Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERG--QVVKISHSGEVFNSLVTY 202 VV+T ELL +YK+ E QLP + D A Y+G QVVKI E +TY Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFGKSEADPQVVKIIRPSETAGRYITY 208 Query: 201 RCV 193 R V Sbjct: 209 RLV 211 [179][TOP] >UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LN15_9ALVE Length = 168 Score = 60.8 bits (146), Expect = 7e-08 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 8/117 (6%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361 + ++RLSR IL+V+ +T +A+ ++ Q +E+ +++VVN T H + LTA Sbjct: 63 MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTA 122 Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 K+ LL++YK++E QLP + +DP V+KI E VTYR V Sbjct: 123 EEKRLLLERYKVKENQLPRIQSSDP-----------VMKIIRPSETAGRYVTYRLCV 168 [180][TOP] >UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH Length = 202 Score = 60.8 bits (146), Expect = 7e-08 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 6/133 (4%) Frame = -1 Query: 573 FTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVV 394 FT D + K + I N+ +S+LILI +K+ A L+ ++E+ D++ Sbjct: 69 FTSNDKLSKKQIETIITDYSNQS-ISKLILISCNKLNHAALAYLDKSNFSIELFLYKDIL 127 Query: 393 VNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232 NPTKH+ +++ K LL K LP +L+ D +A Y G E V++I+ Sbjct: 128 FNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPIILKKDVIAKYLGAELNDVIEITRK 187 Query: 231 GEVFNSLVTYRCV 193 + YR V Sbjct: 188 SKTTGESKYYRVV 200 [181][TOP] >UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE Length = 223 Score = 60.5 bits (145), Expect = 1e-07 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%) Frame = -1 Query: 429 HAVEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYG 268 ++ E+ +D+V + TKH ++L K+ LLKKY + + QLP +L++DP+A + G Sbjct: 138 YSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGLVDNQLPRILQSDPIARFLG 197 Query: 267 LERGQVVKISHSGEVFNSLVTYRCVV 190 L G VVKI E VTYR + Sbjct: 198 LHHGDVVKIIRKSETAGLYVTYRIAI 223 [182][TOP] >UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VBP1_NOSCE Length = 204 Score = 60.5 bits (145), Expect = 1e-07 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%) Frame = -1 Query: 573 FTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVV 394 F + I KS++ + + + LIL++ KM+ ++ + +EI K +++ Sbjct: 65 FIDDEKIGKSSIEKVI-ETYKSINIYHLILVINQKMSSASQNIVNVSDLKIEIFKDEELM 123 Query: 393 VNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232 N TKHV +L K +L+K KI Q+P +L+ DP+ + G E GQVV+I+ Sbjct: 124 FNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKILKRDPVCRFLGAESGQVVEITRK 183 Query: 231 GEVFNSLVTYRCV 193 + Y+ V Sbjct: 184 SRTAGESIFYKVV 196 [183][TOP] >UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE Length = 224 Score = 60.1 bits (144), Expect = 1e-07 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%) Frame = -1 Query: 429 HAVEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYG 268 ++ E+ +D+V + TKH ++L K+ LLKKY + + QLP +L++DP+A + G Sbjct: 139 YSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPRILQSDPIARFLG 198 Query: 267 LERGQVVKISHSGEVFNSLVTYRCVV 190 L G VVKI E VTYR + Sbjct: 199 LHHGDVVKIIRKSETAGLYVTYRIAI 224 [184][TOP] >UniRef100_C5YQI4 Putative uncharacterized protein Sb08g001130 n=1 Tax=Sorghum bicolor RepID=C5YQI4_SORBI Length = 274 Score = 59.7 bits (143), Expect = 2e-07 Identities = 29/75 (38%), Positives = 45/75 (60%) Frame = -1 Query: 417 IIKLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238 ++ + V+ P KH VLT K +L K Y + + LP ML +D +A Y G +G VVK++ Sbjct: 200 LVNITKHVLKP-KHEVLTVEEKVKLQKDYNVVDSHLPLMLESDAVAHYQGFRQGTVVKVT 258 Query: 237 HSGEVFNSLVTYRCV 193 + E+ + VTYRC+ Sbjct: 259 YDNELTGNHVTYRCI 273 [185][TOP] >UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1 Tax=Trypanosoma brucei RepID=Q388R5_9TRYP Length = 219 Score = 59.7 bits (143), Expect = 2e-07 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 11/113 (9%) Frame = -1 Query: 495 RLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTAAGKQ 349 R+I++ K+ ++ ++ + V++ +D+VVN T KH L + Sbjct: 107 RVIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVK 166 Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 E+L+ + +E LP +L TDP+A+Y GLERG+VV+I VTYR VV Sbjct: 167 EMLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQVV 219 [186][TOP] >UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2 Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG Length = 219 Score = 59.7 bits (143), Expect = 2e-07 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 11/113 (9%) Frame = -1 Query: 495 RLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTAAGKQ 349 R+I++ K+ ++ ++ + V++ +D+VVN T KH L + Sbjct: 107 RVIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVK 166 Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190 E+L+ + +E LP +L TDP+A+Y GLERG+VV+I VTYR VV Sbjct: 167 EMLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQVV 219 [187][TOP] >UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7ECH0_SCLS1 Length = 242 Score = 59.3 bits (142), Expect = 2e-07 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%) Frame = -1 Query: 423 VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262 +E D++VN T KHV+L+ + +LL +Y++++ QLP + DP+A Y GL Sbjct: 158 IETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYRLKDTQLPRIQAADPVAKYLGLR 217 Query: 261 RGQVVKISHSGEVFNSLVTYR 199 RGQVVKI E +YR Sbjct: 218 RGQVVKIIRKSETAGRYASYR 238 [188][TOP] >UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6SPK6_BOTFB Length = 242 Score = 59.3 bits (142), Expect = 2e-07 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%) Frame = -1 Query: 423 VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262 +E D++VN T KHV+L+ + +LL +Y++++ QLP + DP+A Y GL Sbjct: 158 IETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYRLKDTQLPRIQAADPVAKYLGLR 217 Query: 261 RGQVVKISHSGEVFNSLVTYR 199 RGQVVKI E +YR Sbjct: 218 RGQVVKIIRKSETAGRYASYR 238 [189][TOP] >UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LUR5_ARATH Length = 178 Score = 58.9 bits (141), Expect = 3e-07 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%) Frame = -1 Query: 423 VEIIKLNDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262 +E+ + +++VN +HV LT KQ+ L++ + LP + TDP+A Y+GL+ Sbjct: 95 IEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLERKRTRFVVLPRIHVTDPIARYFGLK 154 Query: 261 RGQVVKISHSGEVFNSLVTYRCVV 190 RG+VVKIS E +TYR V+ Sbjct: 155 RGEVVKISRLSETSGRYITYRYVI 178 [190][TOP] >UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SWJ6_PHYPA Length = 211 Score = 58.9 bits (141), Expect = 3e-07 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 12/121 (9%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361 + +E + R + +V+ +TP +++ + ++ +E+ + +VN T+ H +LT Sbjct: 91 MKRENVPRAVFVVQQHITPLSKQYISRKAQKYHLEVFLEPEFLVNITECYLVPLHEILTP 150 Query: 360 AGKQELLKKYK----IEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 K LL++Y + LP M DP+A YYG+ GQVVKI S E VTYR Sbjct: 151 EEKNTLLERYTEGNPVMLVLLPWMQHNDPVARYYGINPGQVVKIIQSSETAGRYVTYRLF 210 Query: 192 V 190 V Sbjct: 211 V 211 [191][TOP] >UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE Length = 176 Score = 58.2 bits (139), Expect = 5e-07 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 7/77 (9%) Frame = -1 Query: 402 DVVVNPTKHVVL------TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK- 244 ++VVN TKH ++ T K LL++YK++E+QLP + TDP+A Y GL+RGQVVK Sbjct: 99 ELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIKVTDPIARYLGLKRGQVVKI 158 Query: 243 ISHSGEVFNSLVTYRCV 193 I + V+YR V Sbjct: 159 IRENSPTAGRYVSYRLV 175 [192][TOP] >UniRef100_UPI000155C2F2 PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide E, 25kDa n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155C2F2 Length = 60 Score = 56.6 bits (135), Expect = 1e-06 Identities = 26/52 (50%), Positives = 34/52 (65%) Frame = -1 Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR V Sbjct: 8 ELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 59 [193][TOP] >UniRef100_A7QJL5 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7QJL5_VITVI Length = 67 Score = 56.6 bits (135), Expect = 1e-06 Identities = 25/40 (62%), Positives = 32/40 (80%) Frame = -1 Query: 312 LPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193 LP ML+ D +A YYGLE+GQVVK+ ++GE+ S VTYRCV Sbjct: 27 LPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 66 [194][TOP] >UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide E, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925DCF Length = 187 Score = 54.7 bits (130), Expect = 5e-06 Identities = 30/90 (33%), Positives = 52/90 (57%) Frame = -1 Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVVVNPTKHVVLTAAGKQELLK 337 + +E ++R I++V++ MTP A++ + +HVVL+ K ELL Sbjct: 78 MQEEGINRAIIVVQTGMTPSAKQLVP-------------------EHVVLSPEEKAELLT 118 Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVV 247 +YK+++ QLP + + D +A Y+GL+RGQ V Sbjct: 119 RYKLKDHQLPRIQQGDTIARYFGLKRGQFV 148 [195][TOP] >UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans RepID=Q3LW39_BIGNA Length = 204 Score = 54.7 bits (130), Expect = 5e-06 Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 6/83 (7%) Frame = -1 Query: 423 VEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262 +EI ++++NP KH V+L K+++LK Y +++ QLP + +DP++ YYG + Sbjct: 121 IEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIKLSDPISKYYGAK 180 Query: 261 RGQVVKISHSGEVFNSLVTYRCV 193 +G + KI E ++YR + Sbjct: 181 KGNMFKIIRFSENIGVYLSYRII 203