BB919819 ( RCE25747 )

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[1][TOP]
>UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
           Tax=Medicago truncatula RepID=Q2HW77_MEDTR
          Length = 224

 Score =  199 bits (505), Expect = 2e-49
 Identities = 103/137 (75%), Positives = 117/137 (85%), Gaps = 6/137 (4%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403
           QVVF GTD+IRKSNL  I +QIV+KERLSRLIL+++SKMT YARKELENC   VEII+LN
Sbjct: 88  QVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELENCPFKVEIIQLN 147

Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
           D++VN TKHV      VLTA  KQ+LL KYK+EEKQLPHMLRTD +ASYYGLE+GQVVKI
Sbjct: 148 DLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLPHMLRTDAIASYYGLEKGQVVKI 207

Query: 240 SHSGEVFNSLVTYRCVV 190
           SHSGE+FNSLV YRCVV
Sbjct: 208 SHSGEMFNSLVMYRCVV 224

[2][TOP]
>UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR
          Length = 233

 Score =  144 bits (362), Expect = 7e-33
 Identities = 69/135 (51%), Positives = 100/135 (74%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           V+F GTD I+ +N+  ++ QI+NKE L  LILI++SKM  +A+KELE     VE+ ++ D
Sbjct: 98  VMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFPFKVEVFQITD 157

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKHV      +LTA  KQ+++ KYK+E+KQLP ML +D +  YYGL++GQ+VKI+
Sbjct: 158 LLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKIT 217

Query: 237 HSGEVFNSLVTYRCV 193
           +SGE+ + LVTYRCV
Sbjct: 218 YSGEIVDHLVTYRCV 232

[3][TOP]
>UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9RGC5_RICCO
          Length = 239

 Score =  136 bits (342), Expect = 1e-30
 Identities = 74/135 (54%), Positives = 96/135 (71%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           VVF GT+ I+ +N+  +  QI NKE L+ LILI++SKM  YARKEL      VEI  ++D
Sbjct: 104 VVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSKVEIFHISD 163

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKHV      VLTA  KQ+LL K+  E+KQLP ML TD ++ YYG E+GQVVKI+
Sbjct: 164 LLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRMLVTDAISRYYGFEKGQVVKIT 223

Query: 237 HSGEVFNSLVTYRCV 193
           +SG + +SLVTYRCV
Sbjct: 224 YSGGLVDSLVTYRCV 238

[4][TOP]
>UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9ST46_RICCO
          Length = 238

 Score =  125 bits (314), Expect = 2e-27
 Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           V+F G   I+ S + AI  QIVNK+ L+ LIL++++++T  A K ++  +  VE+ ++ D
Sbjct: 103 VLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITD 162

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKHV      VLT   KQ+LLK Y IEEKQLP +LR D +A YYGLE+GQVVK++
Sbjct: 163 LLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVT 222

Query: 237 HSGEVFNSLVTYRCV 193
           +SGE+  S VTYRCV
Sbjct: 223 YSGEITESHVTYRCV 237

[5][TOP]
>UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
           Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR
          Length = 248

 Score =  125 bits (313), Expect = 3e-27
 Identities = 67/135 (49%), Positives = 93/135 (68%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           VVF+G   ++ + +  I  QIVN+E L+ LILIV++++T  A K +      VEI ++ D
Sbjct: 113 VVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITD 172

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKHV      VLT   K+ LLKKY I+EKQLP ML+TD +A YYGL+RGQVVK++
Sbjct: 173 LLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 232

Query: 237 HSGEVFNSLVTYRCV 193
           ++GE+    VTYRCV
Sbjct: 233 YTGEITQMHVTYRCV 247

[6][TOP]
>UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence
           n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI
          Length = 221

 Score =  124 bits (312), Expect = 4e-27
 Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           VVF GTD IRK+ +  I  QI N+E L RLIL+++SKM  +ARK ++     VE  ++ +
Sbjct: 87  VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 145

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           +++N TKHV      +L+A  K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+
Sbjct: 146 LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKIT 205

Query: 237 HSGEVFNSLVTYRCV 193
           + G + +SLVTYRCV
Sbjct: 206 YKGGMTDSLVTYRCV 220

[7][TOP]
>UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI0001985D3D
          Length = 1260

 Score =  124 bits (311), Expect = 5e-27
 Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           VVF GTD IRK+ +  I  QI N+E L RLIL+++SKM  +ARK ++     VE  ++ +
Sbjct: 87  VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 145

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           +++N TKHV      +L+A  K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+
Sbjct: 146 LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKIT 205

Query: 237 HSGEVFNSLVTYRCV 193
           + G + +SLVTYRC+
Sbjct: 206 YKGGMTDSLVTYRCI 220

[8][TOP]
>UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5B0H1_VITVI
          Length = 162

 Score =  124 bits (311), Expect = 5e-27
 Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           VVF GTD IRK+ +  I  QI N+E L RLIL+++SKM  +ARK ++     VE  ++ +
Sbjct: 28  VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 86

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           +++N TKHV      +L+A  K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+
Sbjct: 87  LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQKDDAIARYYGLEKGQVVKIT 146

Query: 237 HSGEVFNSLVTYRCV 193
           + G + +SLVTYRCV
Sbjct: 147 YKGGMTDSLVTYRCV 161

[9][TOP]
>UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SXN9_SOYBN
          Length = 237

 Score =  122 bits (305), Expect = 3e-26
 Identities = 68/135 (50%), Positives = 89/135 (65%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           V+F G   ++ + +     QI+N++ L+ LILIVE+ +T  A K +      VEI ++ D
Sbjct: 102 VIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITD 161

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKHV      VLT   K  LLKKY IEEKQLP ML+TD +A YYGLERGQVVK++
Sbjct: 162 LLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVT 221

Query: 237 HSGEVFNSLVTYRCV 193
           +SGEV    VTYRCV
Sbjct: 222 YSGEVTQMHVTYRCV 236

[10][TOP]
>UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QJL2_VITVI
          Length = 229

 Score =  122 bits (305), Expect = 3e-26
 Identities = 64/135 (47%), Positives = 92/135 (68%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           V+F G D ++ + + +I  QIVNK+ LS+LIL++++ +T  A K ++     VE  ++ D
Sbjct: 94  VIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFSFQVEKFQITD 153

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKHV      VLT   K +LLKKY + EKQLP ML+ D +A YYGLE+GQVVK+ 
Sbjct: 154 LLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVI 213

Query: 237 HSGEVFNSLVTYRCV 193
           ++GE+  S VTYRCV
Sbjct: 214 YNGEITGSHVTYRCV 228

[11][TOP]
>UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR
          Length = 216

 Score =  116 bits (290), Expect = 1e-24
 Identities = 59/135 (43%), Positives = 90/135 (66%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           V+F G   ++   +  I  QI +++ L+ LIL++++ +T  A K L+  +  +EI ++ D
Sbjct: 81  VIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITD 140

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKH+      VL+   KQ LLKKY IEEKQLP +L+ D ++ YYGLERGQVVK++
Sbjct: 141 LLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKKDAISRYYGLERGQVVKVT 200

Query: 237 HSGEVFNSLVTYRCV 193
           + G++  S VTYRCV
Sbjct: 201 YDGDITGSHVTYRCV 215

[12][TOP]
>UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis
           thaliana RepID=Q9M1H8_ARATH
          Length = 233

 Score =  107 bits (268), Expect = 5e-22
 Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 6/136 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           VVF GT+ I   ++ A+H QI N   L  +IL+++SKM  +A+K L      VE   + D
Sbjct: 98  VVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIED 157

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKH+      +L    K++LL+K+ +E+KQLP++   D    YYGL++ QVVKI+
Sbjct: 158 LLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKIT 217

Query: 237 HSGEVFNSLVTYRCVV 190
           +S E     VTYRC++
Sbjct: 218 YSKEPVGDFVTYRCII 233

[13][TOP]
>UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1
           Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH
          Length = 218

 Score =  107 bits (266), Expect = 9e-22
 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 6/135 (4%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           VVF GT  ++ + +  I   ++++E ++ LIL+++S +T  A K +E     VE+ ++ D
Sbjct: 83  VVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITD 142

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN +KHV      VL    K+ LLKK+ IEEKQLP +   DP+  YYGLE GQV+K++
Sbjct: 143 LLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVT 202

Query: 237 HSGEVFNSLVTYRCV 193
           +  E+  S VTYRCV
Sbjct: 203 YKDELSESHVTYRCV 217

[14][TOP]
>UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis
           thaliana RepID=Q9M1J2_ARATH
          Length = 222

 Score =  102 bits (255), Expect = 2e-20
 Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403
           ++VF GT  ++ + + ++   I+++E ++ LIL++++ +T  A K +E     VEI ++ 
Sbjct: 86  KIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQIT 145

Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
           D++VN TKH       VL    K  LLKK+ IEEKQLP + + D +  YYGLE+GQVVK+
Sbjct: 146 DLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKV 205

Query: 240 SHSGEVFNSLVTYRCV 193
           ++ GE+  S V +RCV
Sbjct: 206 NYRGELTESHVAFRCV 221

[15][TOP]
>UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1
           Tax=Arabidopsis thaliana RepID=Q8L947_ARATH
          Length = 222

 Score =  102 bits (255), Expect = 2e-20
 Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403
           ++VF GT  ++ + + ++   I+++E ++ LIL++++ +T  A K +E     VEI ++ 
Sbjct: 86  KIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQIT 145

Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
           D++VN TKH       VL    K  LLKK+ IEEKQLP + + D +  YYGLE+GQVVK+
Sbjct: 146 DLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKV 205

Query: 240 SHSGEVFNSLVTYRCV 193
           ++ GE+  S V +RCV
Sbjct: 206 NYRGELTESHVAFRCV 221

[16][TOP]
>UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA
          Length = 223

 Score =  101 bits (251), Expect = 5e-20
 Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
           VVF G+  ++ S +  I   ++ +E L+ LIL+++S +T  A K +E     VE+ +L +
Sbjct: 87  VVFCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFSFKVELFQLTE 146

Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++VN TKHV      VL    K+ L KK+ I+E+QLP +L+ DP A YYGLE+GQVV+++
Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKLLKKDPTAKYYGLEKGQVVEVT 206

Query: 237 HSGEVFNS-LVTYRC 196
           + GE   S  V+YRC
Sbjct: 207 YKGEGSESDHVSYRC 221

[17][TOP]
>UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein,
           expressed n=1 Tax=Oryza sativa Japonica Group
           RepID=Q2QXY2_ORYSJ
          Length = 335

 Score =  101 bits (251), Expect = 5e-20
 Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 7/137 (5%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
           Q+VF   + ++ + +  I+ Q   +E LSRL+LI++SK+   AR+ ++   +  V+I + 
Sbjct: 199 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 257

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            D++VN TKHV      VL+A  K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK
Sbjct: 258 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 317

Query: 243 ISHSGEVFNSLVTYRCV 193
           +++ GE+    V YRCV
Sbjct: 318 VTYDGELTGKRVAYRCV 334

[18][TOP]
>UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ
          Length = 227

 Score =  101 bits (251), Expect = 5e-20
 Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 7/137 (5%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
           Q+VF   + ++ + +  I+ Q   +E LSRL+LI++SK+   AR+ ++   +  V+I + 
Sbjct: 91  QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            D++VN TKHV      VL+A  K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK
Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209

Query: 243 ISHSGEVFNSLVTYRCV 193
           +++ GE+    V YRCV
Sbjct: 210 VTYDGELTGKRVAYRCV 226

[19][TOP]
>UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q2RAP1_ORYSJ
          Length = 227

 Score =  100 bits (248), Expect = 1e-19
 Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 7/137 (5%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
           Q+VF   + ++ + +  I+ Q   +E LSRL+LI++SK+   AR+ ++   +  V+I + 
Sbjct: 91  QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            D++VN TKHV      VL+A  K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK
Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209

Query: 243 ISHSGEVFNSLVTYRCV 193
           + + GE+    V YRCV
Sbjct: 210 VIYDGELTGKRVAYRCV 226

[20][TOP]
>UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=A2ZBC5_ORYSI
          Length = 227

 Score =  100 bits (248), Expect = 1e-19
 Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 7/137 (5%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
           Q+VF   + ++ + +  I+ Q   +E LSRL+LI++SK+   AR+ ++   +  V+I + 
Sbjct: 91  QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            D++VN TKHV      VL+A  K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK
Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209

Query: 243 ISHSGEVFNSLVTYRCV 193
           + + GE+    V YRCV
Sbjct: 210 VIYDGELTGKRVAYRCV 226

[21][TOP]
>UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
           RepID=B6TJI5_MAIZE
          Length = 264

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
           +VVF     ++ + +  I+ + V  E LSRLILI++ K+    R+ ++   +  V+  ++
Sbjct: 128 KVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQI 186

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            +++VN TKHV      VLTA GK +LLK+Y + + QLP ML  D +A YYGL +G VVK
Sbjct: 187 TELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 246

Query: 243 ISHSGEVFNSLVTYRCV 193
           + +  E+  + VTYRC+
Sbjct: 247 VIYDSELTGNHVTYRCI 263

[22][TOP]
>UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FYH9_MAIZE
          Length = 248

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
           +VVF     ++ + +  I+ + V  E LSRLILI++ K+    R+ ++   +  V+  ++
Sbjct: 112 KVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQI 170

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            +++VN TKHV      VLTA GK +LLK+Y + + QLP ML  D +A YYGL +G VVK
Sbjct: 171 TELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 230

Query: 243 ISHSGEVFNSLVTYRCV 193
           + +  E+  + VTYRC+
Sbjct: 231 VIYDSELTGNHVTYRCI 247

[23][TOP]
>UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum
           bicolor RepID=C5Y4H1_SORBI
          Length = 263

 Score = 89.0 bits (219), Expect = 3e-16
 Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 7/137 (5%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
           +VVF   + ++ + +  ++   V  E LSRLILI++ ++   AR+ ++    + V+  ++
Sbjct: 127 KVVFCPPEPVKIAAIRVVYTG-VKDENLSRLILILQGRIMSKAREAIKEIFPYKVDTFQI 185

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            +++VN TKH       VLTA  K +LLK+Y + + QLP ML  D +A YYGL +G VVK
Sbjct: 186 TELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 245

Query: 243 ISHSGEVFNSLVTYRCV 193
           + +  E+  + VTYRC+
Sbjct: 246 VIYDSELTGNHVTYRCI 262

[24][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
           RepID=Q5DDM1_SCHJA
          Length = 206

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELE--NCQHAVEIIKL 406
           V F   + +    + A  NQ+        ++++ E  +TP A+  +   +C++ +E    
Sbjct: 69  VFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFE 128

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
           N+++VN T+H       VLT   K+ELL++Y+++E QLP M  +DP+A YYGL RGQVV+
Sbjct: 129 NELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVR 188

Query: 243 ISHSGEVFNSLVTYRCVV 190
           I+   E     +TYR V+
Sbjct: 189 ITRPSETAGRYITYRIVL 206

[25][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
           Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
          Length = 208

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELE--NCQHAVEIIKL 406
           V F   + +    + A  NQ+        ++++ E  +TP A+  +   +C++ +E    
Sbjct: 71  VFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFE 130

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
           N+++VN T+H       VLT   K+ELL++Y+++E QLP M  +DP+A YYGL RGQVV+
Sbjct: 131 NELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVR 190

Query: 243 ISHSGEVFNSLVTYRCVV 190
           I+   E     +TYR V+
Sbjct: 191 ITRPSETAGRYITYRIVL 208

[26][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
           guineensis RepID=B3TLL2_ELAGV
          Length = 204

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 8/114 (7%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHV------VLTAAGK 352
           E ++R IL+V+  +TP+AR+ L     ++ +E+ +  +++VN  +HV      VLT+  K
Sbjct: 91  ENVTRGILVVQQALTPFARQSLAEVSQKYMLEVFQDTELLVNIKEHVLVPEHQVLTSEEK 150

Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           + LL++Y ++E QLP +  TDP+A YYGL+RGQVVKI    E     VTYR VV
Sbjct: 151 KTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 204

[27][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
          Length = 213

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 46/117 (39%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361
           + ++RLSR IL+V+  +T +A+  ++    Q  +E+   +++VVN T H +      LTA
Sbjct: 97  MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTA 156

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
             K+ LL++YK++E QLP +  +DP+A YYGL++GQV+KI    E     VTYR  V
Sbjct: 157 EEKRLLLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213

[28][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
          Length = 210

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 47/117 (40%), Positives = 75/117 (64%), Gaps = 8/117 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E ++R I++V+S MTP A++ L +   ++ +E    +++++N T+H      VV+T 
Sbjct: 94  MQEENITRAIILVQSGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
             K+ELLKKYK++E QL  +   DP+A YYGL+RGQVVKI    E     ++YR VV
Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLVV 210

[29][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9ETS9_ORYSJ
          Length = 210

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV--EIIKL 406
           V F   D +   ++   + +++  E +SR +L+++  +TP+AR  L+  +  +  EI + 
Sbjct: 74  VFFPNDDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQE 132

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            ++++N  +HV      VL    K+ LL++Y ++E QLP +  TDP+A YYGL RGQVVK
Sbjct: 133 AELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192

Query: 243 ISHSGEVFNSLVTYRCVV 190
           I    E     VTYR VV
Sbjct: 193 IIRPSETAGRYVTYRYVV 210

[30][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
           RepID=B4FU06_MAIZE
          Length = 210

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARK---------ELENCQH 427
           V F   D +   ++   + +++  E +SR +L+++  +TP+A+           LE  Q 
Sbjct: 74  VFFPNDDKVGMKHIKK-YVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQE 132

Query: 426 AVEIIKLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVV 247
           A  +I + + V+ P +H VLT   K+ LL++Y ++E QLP +  TDP+A YYGL RGQVV
Sbjct: 133 AEMLINIKEHVLVP-EHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVV 191

Query: 246 KISHSGEVFNSLVTYRCVV 190
           KI    E     VTYR VV
Sbjct: 192 KIIRPSETAGRYVTYRYVV 210

[31][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SXZ4_SOYBN
          Length = 206

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
           +N E + R IL+ ++ +TP+AR           LE  Q A  ++ + +  + P +H VLT
Sbjct: 90  MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVP-EHQVLT 148

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
            A K+ LL++Y ++E QLP +  TDP+A YYGL+RGQVVKI    E     VTYR VV
Sbjct: 149 DAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206

[32][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SVA4_SOYBN
          Length = 206

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
           +N E + R IL+ ++ +TP+AR           LE  Q A  ++ + +  + P +H VLT
Sbjct: 90  MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVP-EHQVLT 148

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
            A K+ LL++Y ++E QLP +  TDP+A YYGL+RGQVVKI    E     VTYR VV
Sbjct: 149 DAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206

[33][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
          Length = 210

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV--EIIKL 406
           V F   D +   ++   + +++  E +SR +L+++  +TP+AR  L+  +  +  EI + 
Sbjct: 74  VFFPNDDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQE 132

Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            ++++N  +HV      VL    K+ LL++Y ++E QLP +  TDP+A YYGL RGQVVK
Sbjct: 133 AELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192

Query: 243 ISHSGEVFNSLVTYRCVV 190
           I    E     VTYR VV
Sbjct: 193 IIRPSETAGRYVTYRYVV 210

[34][TOP]
>UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FEX9_MAIZE
          Length = 127

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVV 370
           +++  E +SR +L+++  +TP+A+           LE  Q A  +I + + V+ P +H V
Sbjct: 9   EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVP-EHQV 67

Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           LT   K+ LL++Y ++E QLP +  TDP+A YYGL RGQVVKI    E     VTYR VV
Sbjct: 68  LTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYVV 127

[35][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RWG5_PHYPA
          Length = 208

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 9/115 (7%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355
           E + R IL+V+  +TP+AR+          LE  Q A  ++ + + V+ P  H VLT   
Sbjct: 95  ENVHRAILVVQQNLTPFARQCVSEMASKYHLEVFQEAELLVNIKEHVLVPL-HEVLTPDE 153

Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           K+ LL++Y ++E QLP M   DP+A YYGL+RGQVVKI    E     VTYR VV
Sbjct: 154 KKTLLERYTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 208

[36][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RKG6_PHYPA
          Length = 208

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 9/115 (7%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355
           E + R IL+V+  +TP+AR+          +E  Q A  ++ + D V+ P +H VL A  
Sbjct: 95  ENVHRAILVVQQNLTPFARQCVSEMSSKYHVEVFQEAELLVNIKDHVLVP-QHEVLNAEE 153

Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           K  LL++Y ++E QLP M   DP+A YYGL+RGQVVKI    E     VTYR VV
Sbjct: 154 KITLLQRYTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 208

[37][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caligus clemensi RepID=C1C1G9_9MAXI
          Length = 210

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 46/117 (39%), Positives = 75/117 (64%), Gaps = 8/117 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E ++R I++V++ MTP A++ L +   ++ +E    +++++N T+H      VV+T 
Sbjct: 94  MQEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
             K+ELLKKYK++E QL  +   DP+A YYGL+RGQVVKI    E     ++YR VV
Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLVV 210

[38][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
           RepID=A8XGH1_CAEBR
          Length = 211

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 8/119 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + ++ +SR I++V++ MTP A++ + +   ++ +E     +++VN T+H      VV+
Sbjct: 93  QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           TA  K ELL +YK+++ QLP + + DP+A Y+GL RGQVVKI    E     +TYR VV
Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[39][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
          Length = 211

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 8/119 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + ++ +SR I++V++ MTP A++ + +   ++ +E     +++VN T+H      VV+
Sbjct: 93  QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           TA  K ELL +YK+++ QLP + + DP+A Y+GL RGQVVKI    E     +TYR VV
Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211

[40][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
          Length = 213

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361
           + ++RLSR IL+V+  +T +A+  ++    Q  +E+   +++VVN T H +      LT 
Sbjct: 97  MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTP 156

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
             K+ LL++YK++E QLP +  +DP+A YYGL++GQV+KI    E     VTYR  V
Sbjct: 157 EEKRLLLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213

[41][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
           Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
          Length = 221

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQ--HAVEIIKL 406
           V F    N+ K+++      + +K    R I+I   KM+P A+K L+  Q  + +E    
Sbjct: 85  VYFCADKNVSKASMKTFIGSM-DKMGARRGIIIWSEKMSPAAKKTLQEMQSEYHLEDFPE 143

Query: 405 NDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
           +D++VN TKH       V+    K  L+K+Y+++E QLP ++ TDP+A YYGL+RGQV+K
Sbjct: 144 SDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRIMITDPVAKYYGLKRGQVMK 203

Query: 243 ISHSGEVFNSLVTYR 199
           I  + E     +TYR
Sbjct: 204 IERASETAGRYITYR 218

[42][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
           RepID=C6K8L9_CAEBE
          Length = 211

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 8/138 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKL 406
           V F     I    + AI  Q+  ++ +SR I++V++ MTP A++ + +   ++ +E    
Sbjct: 75  VFFPDDTKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLE 133

Query: 405 NDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
            +++VN T+H      VV+T+  K ELL +YK+++ QLP + + DP+A Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193

Query: 243 ISHSGEVFNSLVTYRCVV 190
           I    E     +TYR VV
Sbjct: 194 IIRPSETAGRYITYRLVV 211

[43][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
           Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
          Length = 205

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 10/141 (7%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415
           +++    D I+K+ +  +    + ++++ + R IL+ ++ +TP+AR  ++    +H +E 
Sbjct: 65  KIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124

Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
               +++VN TKH      + LT+  K+ LL++YKI+E +LP +   DP+  Y+GL +GQ
Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQ 184

Query: 252 VVKISHSGEVFNSLVTYRCVV 190
           VVKI    E     VTYR VV
Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205

[44][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
           thaliana RepID=O81098_ARATH
          Length = 205

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
           +  E + R IL+V+  +TP+AR           LE  Q A  ++ + + V+ P +H VLT
Sbjct: 89  MKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVP-EHQVLT 147

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
              K+ LL++Y ++E QLP +  TDP+A Y+GL+RGQVVKI    E     VTYR VV
Sbjct: 148 TEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205

[45][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
           putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
          Length = 205

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415
           +V+    D  +K+ +  I    + + +  + R IL+ ++ +T +AR  +     +H +E 
Sbjct: 65  RVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHIIEN 124

Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
              ++++VN TKH      V LT   KQ LL +Y+++E QLP +   DP+A Y+GL RGQ
Sbjct: 125 FMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQSADPVARYFGLSRGQ 184

Query: 252 VVKISHSGEVFNSLVTYRCVV 190
           VVKI    E     VTYR VV
Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205

[46][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
          Length = 207

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 8/119 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E +SR +++V+  MTP A++ L +   ++ +E     ++++N T+H      V++
Sbjct: 89  QRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILEQFVEAELMINITEHELVPEHVLM 148

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           T   KQELL +YK++E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR VV
Sbjct: 149 TPDEKQELLLRYKLKEHQLPRIQSGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLVV 207

[47][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
           intestinalis RepID=UPI000180C3C9
          Length = 210

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E + R I++V+  MTP A++ L +   ++ +E     ++++N T+H      VVL
Sbjct: 92  QRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPKYILEQFLEQELLINITEHELVPEHVVL 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T   K ELL +YK+++ QLP +   DP+A Y+GL+RGQVVKI    E     VTYR V
Sbjct: 152 TPEEKSELLTRYKLKDHQLPRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYVTYRLV 209

[48][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
           RepID=B3S3Q9_TRIAD
          Length = 210

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVL 367
           Q + +E ++R I+I++S MTP A++ L +   ++ +E    +++++N T      KH+V+
Sbjct: 92  QRMQRENINRAIIIIQSGMTPTAKQSLIDMAPKYTLESFMESELMINITEHHLVPKHIVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           +   K ELL +YK++E QLP +   DP+A YYGL+RGQ V+I    E     +TYR V
Sbjct: 152 SPEEKAELLARYKLKEHQLPRIQVGDPVARYYGLKRGQFVRIIRPSETAGRYITYRLV 209

[49][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9RKM1_RICCO
          Length = 225

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---ELENCQHAVEIIKLNDVVVNPTKHV------VLT 364
           +  E + R IL+V+  +TP+AR    E+ +  H +E+ + ++++VN  +HV      VLT
Sbjct: 109 MKSENVFRAILVVQQSLTPFARTCIAEIASKFH-LEVFQESELLVNIKEHVLVPEHQVLT 167

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
              K+ LL++Y ++E QLP +  +DP+A YYGL+RGQVVKI    E     VTYR VV
Sbjct: 168 NEEKKTLLERYTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 225

[50][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
          Length = 206

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
           +  E + R IL+V+  +TP+AR           LE  Q A  ++ + + V+ P +H VL+
Sbjct: 90  MKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVP-EHQVLS 148

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
              K+ LL++Y ++E QLP +  TDP+A YYGL+RGQVVKI    E     VTYR V+
Sbjct: 149 NEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206

[51][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FGM1_MAIZE
          Length = 206

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 11/134 (8%)
 Frame = -1

Query: 558 NIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEII 412
           N  K  +  I N +  +  E +   IL+V+  ++ +AR           LE  Q A  ++
Sbjct: 74  NEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLV 133

Query: 411 KLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
            + D V+ P +HV+LT   K+ LL++Y ++E QLP +  TDP+A YYG++RGQVVKI+ +
Sbjct: 134 NIKDHVLVP-EHVLLTPEDKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKITRA 192

Query: 231 GEVFNSLVTYRCVV 190
            E     +TYR VV
Sbjct: 193 SETAGRYITYRYVV 206

[52][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
           strain H RepID=B3L6X3_PLAKH
          Length = 205

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415
           +++    D  +K+ +  +    + ++++ + R IL+ ++ +TP+AR  ++    +H +E 
Sbjct: 65  KIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124

Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
               +++VN TKH      + LT+  K+ LL++YKI+E +LP +   DP+  Y+GL +GQ
Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQ 184

Query: 252 VVKISHSGEVFNSLVTYRCVV 190
           VVKI    E     VTYR VV
Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205

[53][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
          Length = 204

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 10/116 (8%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENCQ----------HAVEIIKLNDVVVNPTKHVVLTAA 358
           E+++R I++V+  +TP+AR+ L  CQ           A  ++ + D V+ P +H++L+  
Sbjct: 90  EQVNRAIIVVQQSLTPFARQSLLECQAQKFYIEQFQEAELLVNITDHVLVP-EHILLSDE 148

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
            K+ LL +YK++E QLP +   DP+A Y+G+ RGQVV+I    E     VTYR  V
Sbjct: 149 QKRVLLDRYKVKETQLPRIQMHDPVARYFGMRRGQVVRIIRPSETAGRYVTYRLCV 204

[54][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PEL2_VITVI
          Length = 206

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
           +  E + R IL+V+  +TP+AR           LE  Q A  ++ + + V+ P +H VLT
Sbjct: 90  MKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVP-EHQVLT 148

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           +  K+ LL++Y ++E QLP +  +DP+A Y+GL+RGQVVKI    E     +TYR VV
Sbjct: 149 SEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 206

[55][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
           falciparum 3D7 RepID=Q8ID59_PLAF7
          Length = 205

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
 Frame = -1

Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415
           +++    D ++K+ +  +    + + ++ + R IL+ ++ +TP+AR  ++    +H +E 
Sbjct: 65  RIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHIIEN 124

Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
               +++VN TKH      + LT+  K+ LL++YKI E +LP +   DP+  Y+GL +GQ
Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDPVCRYFGLSKGQ 184

Query: 252 VVKISHSGEVFNSLVTYRCVV 190
           VVKI    E     VTYR VV
Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205

[56][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
           HM-1:IMSS RepID=C4LW54_ENTHI
          Length = 204

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 7/136 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLN 403
           +VF       K+++   +   V  E + R I++   K++   ++ +E  +    E +  +
Sbjct: 68  IVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLED 127

Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
           +++VN T      +H++L+   KQELLKKY+++E QLP +L +DP++ YYG +RG VVKI
Sbjct: 128 ELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187

Query: 240 SHSGEVFNSLVTYRCV 193
               E     VTYR V
Sbjct: 188 IRKSETAGRYVTYRAV 203

[57][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
           putative n=1 Tax=Entamoeba dispar SAW760
           RepID=B0EA74_ENTDI
          Length = 204

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 7/136 (5%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLN 403
           +VF       K+++   +   V  E + R I++   K++   ++ +E  +    E +  +
Sbjct: 68  IVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLED 127

Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
           +++VN T      +H++L+   KQELLKKY+++E QLP +L +DP++ YYG +RG VVKI
Sbjct: 128 ELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187

Query: 240 SHSGEVFNSLVTYRCV 193
               E     VTYR V
Sbjct: 188 IRKSETAGRYVTYRAV 203

[58][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
           vitripennis RepID=UPI00015B5456
          Length = 210

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E++ R I++V+S MTP A++ L +   ++ +E    +++++N T+H      +VL
Sbjct: 92  QRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T   K+ELL +YK++E QL  +   DP+A Y+GL+RGQVVKI    E     ++YR V
Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQANDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[59][TOP]
>UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1
           Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA
          Length = 202

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
 Frame = -1

Query: 576 VFTGTDNIRKSNLTAIHNQIVNKER--LSRLILI-VESKMTPYARKELENCQHA---VEI 415
           + T  D I + +   I   I N +   ++R I+I  E  +TP A + L+N + +   +E 
Sbjct: 62  ILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGKTIEF 121

Query: 414 IKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
              ++V++N T      KH VLT   KQE+LK+Y + E QLP +LRTDP++ Y G++ GQ
Sbjct: 122 FSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVKPGQ 181

Query: 252 VVKISHSGEVFNSLVTYRCV 193
           ++KI+ + +     VTYR V
Sbjct: 182 LLKITRNSDTAGHYVTYRLV 201

[60][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186E78B
          Length = 210

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E + R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+
Sbjct: 92  QRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPKYILEQFLESELLINITEHELVPEHVVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T   KQELL++YK++E QL  +   DP+A Y+GL+RGQVVKI    E     ++YR V
Sbjct: 152 TPEEKQELLQRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYISYRLV 209

[61][TOP]
>UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi
           RepID=Q4XTK3_PLACH
          Length = 126

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 8/117 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           ++++ + R IL+ ++ +TP+A+  ++    +H +E     +++VN TKH      + LT+
Sbjct: 10  MDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTS 69

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
             K+ LL++YKI+E +LP +   DP+  Y+GL +GQVVKI    E     VTYR VV
Sbjct: 70  DEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLVV 126

[62][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
          Length = 210

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E + R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+TA
Sbjct: 94  MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
             KQELL +YK++E  L  +   DP+A Y+GL+RGQVVKI  S E     ++YR V
Sbjct: 154 EDKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[63][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
          Length = 210

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E + R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+TA
Sbjct: 94  MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
             KQELL +YK++E  L  +   DP+A Y+GL+RGQVVKI  S E     ++YR V
Sbjct: 154 EDKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[64][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
          Length = 210

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E + R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+TA
Sbjct: 94  MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
             KQELL +YK++E  L  +   DP+A Y+GL+RGQVVKI  S E     ++YR V
Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[65][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
           RepID=B7FSY0_PHATR
          Length = 228

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 8/119 (6%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPTKHV----- 373
           ++   +  E +S  I+I+   +TP+A++ ++    +  +E  K ++++V+ TKH      
Sbjct: 107 VYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHFKESELLVDITKHQLVPVH 166

Query: 372 -VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            VLT   K ELLK+Y++++ QLP +   DP+A YYG+ RGQVVKI    E     VTYR
Sbjct: 167 QVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYR 225

[66][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
           RepID=UPI000056951D
          Length = 211

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R +++V++ MTP A++ L +   ++ +E     ++++N T+H      +V+
Sbjct: 93  QRMQEENITRAVIVVQTGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 152

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK++E QLP +  +DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 153 TKEEVTELLARYKLKETQLPRIQCSDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 210

[67][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
           mordax RepID=C1BIS3_OSMMO
          Length = 210

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R I++V+  MTP A++ L +   ++ +E     ++++N T+H      +V+
Sbjct: 92  QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK++E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 TKEELSELLTRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[68][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
            Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
          Length = 1124

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516  VNKERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVNPT------KHVVLT 364
            + +E + R I++V++ +TP+A++ L  CQ     +E  +  +++VN        +H++L+
Sbjct: 1007 MKEENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIVDHVLVPEHILLS 1066

Query: 363  AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
               K+ LL++YK+++ QLP +   DP+A YYG+ RGQVV+I    E     VTYR  V
Sbjct: 1067 DEQKRTLLERYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 1124

[69][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
           pseudonana CCMP1335 RepID=B8C1Q1_THAPS
          Length = 226

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355
           E +S  IL++   +TP+A++          LE+ + A  ++ + +  + P +H+VL+   
Sbjct: 113 ENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVP-EHLVLSQNE 171

Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           KQELLK+Y++ E QLP +   DP+A YYG++RGQVVKI    E     VTYR
Sbjct: 172 KQELLKRYRLRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYR 223

[70][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
           rerio RepID=Q6DEG5_DANRE
          Length = 210

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R I++V+  MTP A++ L +   ++ +E     ++++N T+H      +V+
Sbjct: 92  QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK++E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[71][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
           Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
          Length = 210

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R I++V+  MTP A++ L +   ++ +E     ++++N T+H      +V+
Sbjct: 92  QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK++E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[72][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
          Length = 210

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R I++V+  MTP A++ L +   ++ +E     ++++N T+H      VV+
Sbjct: 92  QRMQEENITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK+ E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[73][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
          Length = 210

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E + R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+TA
Sbjct: 94  MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHDLVPEHVVMTA 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
             KQELL +YK++E  L  +   DP+A Y+GL+RGQVVKI  + E     ++YR V
Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRASETAGRYISYRLV 209

[74][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
           Tax=Murinae RepID=RPAB1_MOUSE
          Length = 210

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
           ++ Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      
Sbjct: 89  VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEH 148

Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
           VV+T     ELL +YK+ E QLP +   DP+A Y+G++RGQVVKI    E     +TYR 
Sbjct: 149 VVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208

Query: 195 V 193
           V
Sbjct: 209 V 209

[75][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
           polypeptide E, 25kDa n=1 Tax=Pan troglodytes
           RepID=UPI0000E24E5A
          Length = 230

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
           ++ Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      
Sbjct: 109 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 168

Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
           VV+T     ELL +YK+ E QLP +   DP+A Y+G++RGQVVKI    E     +TYR 
Sbjct: 169 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 228

Query: 195 V 193
           V
Sbjct: 229 V 229

[76][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
           RepID=UPI00003C0CAC
          Length = 210

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E++ R I++V+  MTP A++ L +   ++ +E    +++++N T+H      +VL
Sbjct: 92  QRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T   K+ELL +YK++E QL  +   DP+A Y+GL+RGQVVKI    E     ++YR V
Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[77][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MXV4_9CHLO
          Length = 206

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 9/115 (7%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVNPTKHVV------LTAAG 355
           E + R I++V++ +TP+A++ L  C      +E  +  +++VN T+HV+      L+ A 
Sbjct: 92  ESVFRAIIVVQASLTPFAKQSLLECASQSFYIEQFQEMELLVNITEHVLVPEHVLLSDAE 151

Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           K+ LL +YK+++ QLP +   DP+A YYG+ RGQVV+I    E     VTYR  V
Sbjct: 152 KRTLLARYKVKDTQLPRIQLHDPVARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 206

[78][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
           Tax=Theileria annulata RepID=Q4U8E3_THEAN
          Length = 205

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
 Frame = -1

Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346
           + R IL+ ++ +TP+A+  +     ++ +E     +++VN TKH      + LT   KQ 
Sbjct: 94  IHRAILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQN 153

Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           LL+KYK++E Q+P +   DP+A Y+GL +GQVVKI    E     VT+R VV
Sbjct: 154 LLQKYKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLVV 205

[79][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
           RepID=Q4N141_THEPA
          Length = 205

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
 Frame = -1

Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346
           + R IL+ ++ +TP+A+  +     ++ +E     +++VN TKH      + LT   KQ 
Sbjct: 94  IHRAILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQN 153

Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           LL+KYK++E Q+P +   DP+A Y+GL +GQVVKI    E     VT+R VV
Sbjct: 154 LLQKYKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLVV 205

[80][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
           RepID=C3ZQF0_BRAFL
          Length = 210

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E +SR I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+
Sbjct: 92  QRMQEENISRAIIVVQMGMTPSAKQALVDMAPKYILEQFLESELLINITEHQLVPEHVVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           T   K ELL +Y+++E QLP +   DP+A Y+GL+RGQVVKI    E     ++YR
Sbjct: 152 TPEEKAELLARYRLKEHQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYR 207

[81][TOP]
>UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium
           muris RN66 RepID=B6AE06_9CRYT
          Length = 205

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 10/134 (7%)
 Frame = -1

Query: 561 DNIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVV 394
           D  +K+ +  I + +  +++  + R ILI ++ +T +A+  + +   +H +E    N+++
Sbjct: 72  DESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELL 131

Query: 393 VNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
           VN T      KHV+L+   K +LL++YK++E QLP +   DP+A Y+GL + QVVKI   
Sbjct: 132 VNITRHELVPKHVLLSDEEKSQLLERYKVKETQLPRIQHADPVARYFGLAKSQVVKIIRP 191

Query: 231 GEVFNSLVTYRCVV 190
            E     VTYR VV
Sbjct: 192 SETAGRYVTYRLVV 205

[82][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
          Length = 210

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E + R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+T 
Sbjct: 94  MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTV 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
             KQELL +YK++E  L  +   DP+A Y+GL+RGQVVKI  S E     ++YR V
Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[83][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
          Length = 210

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E + R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+T 
Sbjct: 94  MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTV 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
             KQELL +YK++E  L  +   DP+A Y+GL+RGQVVKI  S E     ++YR V
Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209

[84][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
           RepID=A6N9W6_ORNPR
          Length = 210

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 8/119 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VVL
Sbjct: 92  QRMQEENITRAIIVVQQGMTPSAKQALTDMAPKYILEYFLESELLINITEHELVPEHVVL 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           T   K ELL +YK++E  L  +   DP+A Y+GL+RGQVVKI    E     ++YR VV
Sbjct: 152 TPEEKAELLARYKLKENHLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLVV 210

[85][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Pongo abelii RepID=RPAB1_PONAB
          Length = 210

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
           ++ Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      
Sbjct: 89  VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148

Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
           VV+T     ELL +YK+ E QLP +   DP+A Y+G++RGQVVKI    E     +TYR 
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208

Query: 195 V 193
           V
Sbjct: 209 V 209

[86][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Homo sapiens RepID=RPAB1_HUMAN
          Length = 210

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
           ++ Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      
Sbjct: 89  VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148

Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
           VV+T     ELL +YK+ E QLP +   DP+A Y+G++RGQVVKI    E     +TYR 
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208

Query: 195 V 193
           V
Sbjct: 209 V 209

[87][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Bos taurus RepID=RPAB1_BOVIN
          Length = 210

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
           ++ Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      
Sbjct: 89  VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148

Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
           VV+T     ELL +YK+ E QLP +   DP+A Y+G++RGQVVKI    E     +TYR 
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208

Query: 195 V 193
           V
Sbjct: 209 V 209

[88][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
           RepID=UPI0000587A08
          Length = 210

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R I+ V+ KMTP A+  L +   ++ +E     ++++N T+H      VV+
Sbjct: 92  QRMQEENITRAIITVQEKMTPSAKTSLGDMAPKYILEQFLEAELLINITEHDFVPEHVVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T   K ELL +YK+++ QLP +   DP+A Y+GL+RGQVVKI    E     ++YR V
Sbjct: 152 TGEEKAELLARYKLKDHQLPRIQVGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[89][TOP]
>UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4
           RepID=UPI00004E3EE0
          Length = 181

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
 Frame = -1

Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQH----AVEIIKLNDVVVNPT------KHVV 370
           I+   + +R I++V+  +TP+A++ L          +E     +++VN T      KH++
Sbjct: 62  IMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHIL 121

Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           LT   K ELL +YK++E QLP +   DP+A YYGL RG VVKI    E     +TYR  V
Sbjct: 122 LTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 181

[90][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
           RepID=Q28HF5_XENTR
          Length = 210

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      VV+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK+ E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[91][TOP]
>UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1
           Tax=Dictyostelium discoideum RepID=RPAB1_DICDI
          Length = 197

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
 Frame = -1

Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQH----AVEIIKLNDVVVNPT------KHVV 370
           I+   + +R I++V+  +TP+A++ L          +E     +++VN T      KH++
Sbjct: 78  IMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHIL 137

Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           LT   K ELL +YK++E QLP +   DP+A YYGL RG VVKI    E     +TYR  V
Sbjct: 138 LTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 197

[92][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
           Tax=Neognathae RepID=B5FX59_TAEGU
          Length = 210

 Score = 77.4 bits (189), Expect = 8e-13
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      VV+
Sbjct: 92  QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK+ E QLP +   DP+A Y+G++RGQVVKI    E     +TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209

[93][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
           Tax=Euteleostei RepID=B5X957_SALSA
          Length = 210

 Score = 77.4 bits (189), Expect = 8e-13
 Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R  ++V+  MTP A++ L +   ++ +E     ++++N T+H      +V+
Sbjct: 92  QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK++E QLP + + DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQQGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[94][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
           Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
          Length = 206

 Score = 77.4 bits (189), Expect = 8e-13
 Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 8/111 (7%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPTKHV------VLTAAGK 352
           E+++R I++  SK TP+A+  LE+ +  + +E    ++++VN T+HV      +L+   K
Sbjct: 89  EKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEHFLESELLVNITEHVLVPEHRILSPDEK 148

Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           + LL +YKI+E QLP +  +D +A Y GL+RGQVV+I    E     VTYR
Sbjct: 149 RTLLDRYKIKETQLPRIQASDAVARYLGLQRGQVVRIVRPSETAGRYVTYR 199

[95][TOP]
>UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium
           RepID=Q5CNJ4_CRYHO
          Length = 205

 Score = 77.4 bits (189), Expect = 8e-13
 Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 10/134 (7%)
 Frame = -1

Query: 561 DNIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVV 394
           D  +K+ +  I + +  +++  + R ILI ++ +T +A+  + +   +H +E    N+++
Sbjct: 72  DESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELL 131

Query: 393 VNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
           VN TKH      ++L+   K +LL +YKI+E QLP +   DP+A Y+GL +GQVVKI   
Sbjct: 132 VNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQYADPVARYFGLAKGQVVKIIRP 191

Query: 231 GEVFNSLVTYRCVV 190
            E     VTYR VV
Sbjct: 192 SETAGRYVTYRLVV 205

[96][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RWP8_OSTLU
          Length = 205

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 9/115 (7%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVN------PTKHVVLTAAG 355
           E + R I++V++ +TP+A++ L  CQ     +E  +  +++VN        +H++L+   
Sbjct: 91  ENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIIDHVLVPEHILLSDDQ 150

Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           K+ LL +YK+++ QLP +   DP+A YYG+ RGQVV+I    E     VTYR  V
Sbjct: 151 KRTLLDRYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 205

[97][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
          Length = 210

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R I++V+  MTP A++ L +   ++ +E    +++++N T+H      +VL
Sbjct: 92  QRMQEETITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T   KQELL +YK++E QL  +   DP++ Y+GL+RGQVVKI  + E     ++YR V
Sbjct: 152 TPDEKQELLCRYKLKENQLMRIQVGDPVSRYFGLKRGQVVKIVRNSETAGRYISYRLV 209

[98][TOP]
>UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans
           RepID=Q59PF3_CANAL
          Length = 179

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           + ++  S  I I ++ MTP A K +     A +EI + ND++VN T      KH+ L   
Sbjct: 64  ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNRE 123

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI    E      +YR
Sbjct: 124 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 176

[99][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
           albicans RepID=C4YG42_CANAL
          Length = 214

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           + ++  S  I I ++ MTP A K +     A +EI + ND++VN T      KH+ L   
Sbjct: 99  ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNRE 158

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI    E      +YR
Sbjct: 159 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211

[100][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
          Length = 210

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R I++V+  MTP A++ L +   ++ +E     ++++N T+H      +V+
Sbjct: 92  QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           +     ELL +YK++E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 SKEEVVELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[101][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Esox lucius RepID=C1BZT4_ESOLU
          Length = 210

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R  ++V+  MTP A++ L +   ++ +E     ++++N T+H      +V+
Sbjct: 92  QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK++E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[102][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Salmo salar RepID=B5X8S7_SALSA
          Length = 210

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q + +E ++R  ++V+  MTP A++ L +   ++ +E     ++++N T+H      +V+
Sbjct: 92  QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T     ELL +YK++E QLP +   DP+A Y+GL+RGQVVKI    E     +TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209

[103][TOP]
>UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23
           kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
           RepID=B4DJ89_HUMAN
          Length = 117

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 8/116 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      VV+T 
Sbjct: 1   MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
               ELL +YK+ E QLP +   DP+A Y+G++RGQVVKI    E     +TYR V
Sbjct: 61  EEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 116

[104][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
           Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
          Length = 214

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           + ++  S  I I ++ MTP A K +     A +EI + ND++VN T      KH+ L   
Sbjct: 99  ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNHE 158

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI    E      +YR
Sbjct: 159 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211

[105][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D56A05
          Length = 210

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
 Frame = -1

Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
           Q +  E + R I++V+  MTP A++ L +   ++ +E    +++++N T+H      VV+
Sbjct: 92  QRMQDENIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVM 151

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           T   KQELL +YK++E  L  +   DP+A Y+GL+RGQVVKI    E     ++YR V
Sbjct: 152 TPEEKQELLTRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[106][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
           RepID=B0X7A5_CULQU
          Length = 210

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           + +E + R I++V++ MTP A++ L +   ++ +E    +++++N T+H      VV+T 
Sbjct: 94  MQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTP 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
             KQELL +YK++E  L  +   DP+A Y+GL+RGQVVKI    E     ++YR V
Sbjct: 154 EEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209

[107][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
           Tax=Babesia bovis RepID=A7APR4_BABBO
          Length = 205

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
 Frame = -1

Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346
           + R IL+ ++ +TP+A+  +     ++ +E     +++VN TKH      + LTA  KQ 
Sbjct: 94  IHRAILVTQNVLTPFAKDAILEAAPRNIIENFLETELLVNITKHELVPKHIPLTADEKQT 153

Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           LL++YK++E Q+P +   DP+A Y+GL +GQVVKI    E     VT+R V
Sbjct: 154 LLQRYKVKESQIPRIQAADPVARYFGLTKGQVVKIIRPSETAGRYVTFRLV 204

[108][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6JZQ6_SCHJY
          Length = 211

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
           ILI  + MTP A K +     Q  +E  + +D++VN T      KHV+LT   K+ELL +
Sbjct: 104 ILIYANNMTPSATKIISTVTGQFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDR 163

Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           YK+ E QLP +   DP+A Y GL+RGQVVKI    E      +YR
Sbjct: 164 YKLRETQLPRIQMADPVARYLGLKRGQVVKIVRRSETSGRYNSYR 208

[109][TOP]
>UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
           III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG
          Length = 214

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAA 358
           + ++  S  I I ++ +TP A K +     A+ E  + +D+VVN T      KH+ L+  
Sbjct: 99  IQEKNFSTGIFIYQNNITPSANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLSDG 158

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K +LL++YK++E QLP + R DP+A Y GL+RGQVVKI    E      +YR
Sbjct: 159 EKSQLLQRYKLKESQLPRIQREDPVARYLGLKRGQVVKIIRRSETSGRYASYR 211

[110][TOP]
>UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Yarrowia lipolytica RepID=RPAB1_YARLI
          Length = 212

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPTKHVV------LTAA 358
           +++ + +  IL+ E+ MTP A + + +   A ++  +  D++VN TKHV+      L+ A
Sbjct: 97  ISENKFATGILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGA 156

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ LL++Y+++E QLP + R DP+A Y GL RGQ+VKI    E      +YR
Sbjct: 157 EKKFLLERYRLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209

[111][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q7XUF8_ORYSJ
          Length = 205

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
           + +E +   IL+V+  ++ +AR           LE  Q A  ++ + D  + P +H +LT
Sbjct: 89  MKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVP-EHELLT 147

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
              K+ LL++Y ++E QLP +  TDP+A YYG++RGQVVKI  + E     VTYR VV
Sbjct: 148 PEQKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYVV 205

[112][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
           theta RepID=Q98RN7_GUITH
          Length = 214

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKL---NDVVVNPT------KHVVLT 364
           +  E  SR+++I+  K+TP+A++ + +     ++I+    N+++VN T      KH +L+
Sbjct: 97  IKNEGFSRVLMILNGKLTPHAKQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILS 156

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
               + LL++Y I+   LP +L+ DP+A Y GL+R ++VKI+   E     +TYR  +
Sbjct: 157 KNESKSLLERYSIKFDHLPKILKNDPVAKYLGLQRSEIVKITRVSETSGKFITYRICI 214

[113][TOP]
>UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4
          Length = 287

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           ++++  S  I I ++ +TP A K +     A +E+ + +D+VVN T      KH+ L+  
Sbjct: 172 ISEKNFSTGIFIYQTSITPSANKLIPTVSPATIEVFQESDLVVNITHHELVPKHIRLSKP 231

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ELL +Y+++E QLP + R DP+A Y GL+RG VVKI    E      +YR
Sbjct: 232 EKKELLDRYRLKESQLPRIQREDPVARYLGLKRGDVVKIIRRSETSGRYASYR 284

[114][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LR68_PICSI
          Length = 194

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 43/109 (39%), Positives = 65/109 (59%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVVVNPTKHVVLTAAGKQELLK 337
           +  E + R IL+V+ + +   +  LE  Q A  ++ + + V+ P + + LT   K+ LL+
Sbjct: 89  MKSEGVFRAILVVQQEFS--GKFHLEVFQEAELLVNIKEHVLVPEQQI-LTPEEKKTLLE 145

Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           +Y ++E QLP M  +DP+A YYGL+RGQVVKI    E     VTYR VV
Sbjct: 146 RYTLKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 194

[115][TOP]
>UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
           RepID=C7Z7I7_NECH7
          Length = 234

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
           I++    ++P ARK L + +    +E    +D++VN T      KHV+L+   K  LLK+
Sbjct: 127 IMVTHVPLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKR 186

Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           Y+++E QLP +L+ DP+A Y GL+RGQVVKI  + E      +YR  V
Sbjct: 187 YRLKETQLPRILQRDPVARYLGLKRGQVVKIIRNSETAGRYASYRLCV 234

[116][TOP]
>UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL
          Length = 179

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
           I I ++ +TP A K +   Q A +E  +  D++VN T      KH+ L    K+ELL++Y
Sbjct: 73  IFIYQNSITPSANKLIPTVQPASIETFQETDLIVNITHHELVPKHIKLNREEKKELLERY 132

Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           +++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176

[117][TOP]
>UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia
           guilliermondii RepID=A5DHL4_PICGU
          Length = 179

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           ++++  S  I I ++ +TP A K +     A +E  + +D++VN T      KH+ L+  
Sbjct: 64  ISEKNFSTGIFIYQNSITPSANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIKLSIG 123

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ELL +Y+++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 124 EKKELLARYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176

[118][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
           II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
          Length = 213

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           ++++  S  I I ++ +TP A K +     A +E  +  D+VVN T      KH+ L+  
Sbjct: 98  ISEKNFSTGIFIYQNSITPSANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSRD 157

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ELL +Y+++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 158 EKKELLDRYRLKESQLPRVQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 210

[119][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
          Length = 214

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           ++++  S  I I +S +TP A K +     A +E  +  D+VVN T      KH+ L   
Sbjct: 99  ISEKNFSTGIFIYQSSITPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARD 158

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ELL++Y+++E QLP + R DP+  Y GL+RG+VVKI    E      +YR
Sbjct: 159 EKKELLERYRLKESQLPRIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211

[120][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
          Length = 215

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
           I I +S +TP A K L     AV E      +VVN T      KH+ L+ A K+ELLK+Y
Sbjct: 109 IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRY 168

Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           +++E QLP + R DP+A Y GL+RG+V+KI    E      +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212

[121][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
           RepID=B0D9Y7_LACBS
          Length = 208

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
 Frame = -1

Query: 519 IVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHV------VLT 364
           I+ ++ + R I++    MTP ARK +     Q+ +E     D++VN   H       VL+
Sbjct: 91  ILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYRLEEFSEADLLVNIVHHTLVPRHDVLS 150

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
              K+ LL+KY+++E QLP +   DP+A YYGL RGQVVKI+   E      +YR
Sbjct: 151 PDEKKTLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVKITRPSETSGRYASYR 205

[122][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
          Length = 215

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
           I I +S +TP A K L     AV E      +VVN T      KH+ L+ A K+ELLK+Y
Sbjct: 109 IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRY 168

Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           +++E QLP + R DP+A Y GL+RG+V+KI    E      +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212

[123][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
           tropicalis MYA-3404 RepID=C5MBX4_CANTT
          Length = 214

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAA 358
           + ++  S  + I ++ +TP A K +     +V EI + +D++VN T      KH+ L+  
Sbjct: 99  ITEKNFSTGLFIYQNSITPSANKLIPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSKD 158

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K ELL++Y+++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 159 EKVELLERYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211

[124][TOP]
>UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum
           canis CBS 113480 RepID=C5FC74_NANOT
          Length = 236

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
 Frame = -1

Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403
           GT +IR        NQ ++++     I I +S ++P A + L       C+H +E     
Sbjct: 110 GTKHIRA------FNQFIDQQNYHAGIFITQSPISPSAIRLLTAIPGRFCEHFLE----Q 159

Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
           +++VN T      KH++L+A  K++LL++Y+++E QLP +   DP+A Y GL RGQVVKI
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219

Query: 240 SHSGEVFNSLVTYRCV 193
               E      +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235

[125][TOP]
>UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500
           RepID=B8M3B9_TALSN
          Length = 236

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENCQ-HAVEIIKLNDVVVNPT------KHVVL 367
           N +V++      I I  + ++P A + L +   H  E  + +D++VN T      KHV+L
Sbjct: 118 NHLVDEGNYHSGIFITRTAISPSAMRLLSSAVGHICEHFQESDLLVNITHHELVPKHVLL 177

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           +A  K  LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR V+
Sbjct: 178 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 236

[126][TOP]
>UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
           RepID=B6QBA8_PENMQ
          Length = 172

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKLNDVVVNPT------KHVVL 367
           N +V++      I I  + ++P A + L +   H  E  + +D++VN T      KHV+L
Sbjct: 54  NHLVDEGNYHSGIFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLL 113

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           +A  K  LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR V+
Sbjct: 114 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 172

[127][TOP]
>UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
           RepID=B6QBA7_PENMQ
          Length = 236

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKLNDVVVNPT------KHVVL 367
           N +V++      I I  + ++P A + L +   H  E  + +D++VN T      KHV+L
Sbjct: 118 NHLVDEGNYHSGIFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLL 177

Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           +A  K  LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR V+
Sbjct: 178 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 236

[128][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
          Length = 210

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
           ILI  + MTP A K +     Q  +E  + +D++VN T      KH++L+   K+ELL +
Sbjct: 103 ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDR 162

Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           YK+ E QLP +   DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 163 YKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYR 207

[129][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
          Length = 210

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361
           + +E + R I++V++ +TP AR+ L     ++ +E     +++ N T+      HVV+T 
Sbjct: 94  MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
             KQELL +YK+ E  L  +   DP++ Y+GL+ GQVVKI  S +     ++YR VV
Sbjct: 154 DEKQELLSRYKLRESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKTAGRYISYRIVV 210

[130][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5E0K0_DROPS
          Length = 210

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361
           + +E + R I++V++ +TP AR+ L     ++ +E     +++ N T+      HVV+T 
Sbjct: 94  MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
             KQELL +YK++E  L  +   DP++ Y+GL+ GQVVKI  S +     ++YR VV
Sbjct: 154 DEKQELLSRYKLKESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKSAGRYISYRIVV 210

[131][TOP]
>UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides
           RepID=C5PAC2_COCP7
          Length = 236

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  V+++     I I +S ++P A + L       C+H +E     +++VN T      K
Sbjct: 118 NHFVDEQNYHTGIFITQSPISPSAIRLLTGIPGRFCEHFLE----QELLVNITHHELVPK 173

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+A  K+ LL++Y+++E QLP +   DP+A Y GL RGQVVKI    E      +YR
Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233

Query: 198 CV 193
            V
Sbjct: 234 WV 235

[132][TOP]
>UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1
           RepID=UPI000023E584
          Length = 253

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 8/105 (7%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
           I+I    ++P AR+ L + +    +E    +D++VN T      KHV+L+   K  LLK+
Sbjct: 131 IMITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKR 190

Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           Y+++E QLP +L+ DP+A Y GL+RG VVKI  + E      +YR
Sbjct: 191 YRLKETQLPRILQKDPVARYLGLKRGHVVKIIRNSETAGRYASYR 235

[133][TOP]
>UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin
           54-1255 RepID=B6HAG0_PENCW
          Length = 234

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N +V++      I I ++ ++P A + L       C+H  E     D++VN T      K
Sbjct: 116 NHLVDENNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQE----QDLLVNITRHELVPK 171

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+   K +LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR
Sbjct: 172 HVLLSPEEKAKLLERYRLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231

Query: 198 CVV 190
            V+
Sbjct: 232 WVI 234

[134][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
           DSM 70294 RepID=A7TEH4_VANPO
          Length = 215

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
           I + ++ +TP A K + +   A +E      ++VN T      KH+ L+   K+ELLKKY
Sbjct: 109 IFVYQTNVTPSAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKY 168

Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           +++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

[135][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
          Length = 215

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
           I I ++ +TP A K L +   A +E      +VVN T      KH+ L+   K+ELLK+Y
Sbjct: 109 IFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168

Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           +++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

[136][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5DLP1_DROPS
          Length = 320

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPTKH------VVLTAAGK 352
           E + R IL+V   +TP A++ +      + +E    +++ +N TKH      VVL+   K
Sbjct: 97  EGIHRAILVVRDCLTPPAKQSIMAMAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEK 156

Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           ++L + Y+++E Q+  ML +DP+A YYGL+ GQVVKI  + E     ++YR
Sbjct: 157 KQLFRCYRLKESQMMRMLSSDPVARYYGLKPGQVVKIVRASESAGKYISYR 207

[137][TOP]
>UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus
           RepID=Q6MY78_ASPFU
          Length = 220

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  V++      + I ++ ++P A + L       C+H  E     D++VN T      K
Sbjct: 102 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 157

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+   K+ LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR
Sbjct: 158 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 217

Query: 198 CVV 190
            V+
Sbjct: 218 WVI 220

[138][TOP]
>UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
           VaMs.102 RepID=C9S900_9PEZI
          Length = 231

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
           I++  S +T   RK+L + +    +E     D++VN T      KH++L+   K  LLK+
Sbjct: 124 IMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKR 183

Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           Y+++E QLP + R DP+A Y GL+RG VVKI  + E      +YR
Sbjct: 184 YRLKETQLPRIKREDPVARYLGLKRGNVVKIIRNSETAGRYASYR 228

[139][TOP]
>UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb01 RepID=C1GUJ0_PARBA
          Length = 236

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  ++++     I I ++ ++P A + L +     C+H  E     +++VN T      K
Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           H++L+A  K+ LL++Y+++E QLP +   DP+A Y GL RGQVVKI    E      +YR
Sbjct: 174 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233

Query: 198 CV 193
            V
Sbjct: 234 WV 235

[140][TOP]
>UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb18 RepID=C1FYH2_PARBD
          Length = 236

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  ++++     I I ++ ++P A + L +     C+H  E     +++VN T      K
Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           H++L+A  K+ LL++Y+++E QLP +   DP+A Y GL RGQVVKI    E      +YR
Sbjct: 174 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233

Query: 198 CV 193
            V
Sbjct: 234 WV 235

[141][TOP]
>UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb03 RepID=C0S407_PARBP
          Length = 171

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  ++++     I I ++ ++P A + L +     C+H  E     +++VN T      K
Sbjct: 53  NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 108

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           H++L+A  K+ LL++Y+++E QLP +   DP+A Y GL RGQVVKI    E      +YR
Sbjct: 109 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 168

Query: 198 CV 193
            V
Sbjct: 169 WV 170

[142][TOP]
>UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2VUN9_PYRTR
          Length = 235

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 13/143 (9%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-------QHAV 421
           V F   +N+    L      +VN    S +++ V+  MT  A + L          +  V
Sbjct: 94  VEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKP-MTGMAIRLLRGATSLSDGPKGGV 152

Query: 420 EIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLER 259
           E+    D++VN TKH      V+L+   KQ+LL++Y++++ QLP +  TDP+A Y GL R
Sbjct: 153 EVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLRR 212

Query: 258 GQVVKISHSGEVFNSLVTYRCVV 190
           G VVKI    E      +YR V+
Sbjct: 213 GSVVKIIRKSETAGRYASYRWVI 235

[143][TOP]
>UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus
           RepID=B0XMP1_ASPFC
          Length = 171

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  V++      + I ++ ++P A + L       C+H  E     D++VN T      K
Sbjct: 53  NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 108

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+   K+ LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR
Sbjct: 109 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 168

Query: 198 CVV 190
            V+
Sbjct: 169 WVI 171

[144][TOP]
>UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1D205_NEOFI
          Length = 234

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  V++      + I ++ ++P A + L       C+H  E     D++VN T      K
Sbjct: 116 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 171

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+   K+ LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR
Sbjct: 172 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231

Query: 198 CVV 190
            V+
Sbjct: 232 WVI 234

[145][TOP]
>UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus
           RepID=A1CP51_ASPCL
          Length = 234

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  V++      + I ++ ++P A + L       C+H  E     D++VN T      K
Sbjct: 116 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 171

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+   K+ LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR
Sbjct: 172 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231

Query: 198 CVV 190
            V+
Sbjct: 232 WVI 234

[146][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
           Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
          Length = 215

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
           I + ++ +TP A K + +   A +E      +VVN T      KH+ L++  K+ELLK+Y
Sbjct: 109 IFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168

Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           +++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

[147][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
           Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
          Length = 210

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELE--NCQHAVEIIKLNDVVVNPTKH------VVLTAAGK 352
           +++ R I++V   +T  AR  +   N    +E+ +  ++V N T+H       VL    K
Sbjct: 97  DKVHRGIVVVPMAITAPARMAVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAK 156

Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           ++LL  Y +++ QLP +L TDP+A YYGL+RGQVVKI  S        TYR  V
Sbjct: 157 KKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYRFAV 210

[148][TOP]
>UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN
          Length = 219

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
 Frame = -1

Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403
           GT  +R  N T      V++      I I ++ ++P A + L       C+H  E     
Sbjct: 93  GTKQVRAFNHT------VDEHNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQE----Q 142

Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
           D++VN T      KHV+L+   K+ LL +Y+++E QLP +  +DP+A Y GL RGQVVKI
Sbjct: 143 DLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 202

Query: 240 SHSGEVFNSLVTYRCVV 190
               E      +YR V+
Sbjct: 203 IRKSETAGRYASYRWVI 219

[149][TOP]
>UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces
           dermatitidis RepID=C5G7M7_AJEDR
          Length = 236

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  ++++     I I ++ ++P A + L +     C+H  E     +++VN T      K
Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAIRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+A  K+ LL++Y+++E QLP +   DP+A Y GL RGQVVKI    E      +YR
Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233

Query: 198 CV 193
            V
Sbjct: 234 WV 235

[150][TOP]
>UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
           RepID=C0NL28_AJECG
          Length = 236

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  ++++     I + ++ ++P A + L +     C+H  E     +++VN T      K
Sbjct: 118 NHFIDEQNYHTGIFVSQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+A  K+ LL++Y+++E QLP +   DP+A Y GL RGQVVKI    E      +YR
Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYR 233

Query: 198 CV 193
            V
Sbjct: 234 WV 235

[151][TOP]
>UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357
           RepID=B8N6W2_ASPFN
          Length = 171

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N +V++      + I ++ ++P A + L       C+H  E     D++VN T      K
Sbjct: 53  NHVVDENNFHTGVFITQTPISPSAVRLLSGVPGRICEHFQE----QDLLVNITRHELVPK 108

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+   K +LL +Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR
Sbjct: 109 HVLLSPEEKAKLLARYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYR 168

Query: 198 CVV 190
            V+
Sbjct: 169 WVI 171

[152][TOP]
>UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN
          Length = 236

 Score = 68.6 bits (166), Expect = 4e-10
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  ++++     I + ++ ++P A + L +     C+H  E     +++VN T      K
Sbjct: 118 NHFIDEQNYHTGIFVSQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+A  K+ LL++Y+++E QLP +   DP+A Y GL RGQVVKI    E      +YR
Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYR 233

Query: 198 CV 193
            V
Sbjct: 234 WV 235

[153][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
          Length = 210

 Score = 68.2 bits (165), Expect = 5e-10
 Identities = 38/140 (27%), Positives = 77/140 (55%), Gaps = 11/140 (7%)
 Frame = -1

Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKEL-----ENCQHAVEI 415
           V F  + +++ + + ++++++   + L R I++ + K+ P A+  +     E+  + VE 
Sbjct: 68  VFFPESPDVKVAAIKSLYDRL-KSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVET 126

Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
               ++V N T+H       +L  + KQ+LL++Y + E +LP +   DP+  Y+G ++GQ
Sbjct: 127 FAEAELVYNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLPQIQPNDPVCRYFGAQKGQ 186

Query: 252 VVKISHSGEVFNSLVTYRCV 193
           V++I  S +     VTYR V
Sbjct: 187 VLRIVRSSQTAGRYVTYRIV 206

[154][TOP]
>UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2
           Tax=Emericella nidulans RepID=C8VQY1_EMENI
          Length = 235

 Score = 68.2 bits (165), Expect = 5e-10
 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
 Frame = -1

Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403
           GT  +R  N T      V++      I I ++ ++P A + L       C+H  E     
Sbjct: 109 GTKQVRTFNHT------VDEGNFHTGIFITKTPISPSAVRLLSGIPGRICEHFQE----Q 158

Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
           D++VN T      KHV+L+   K +LL++Y+++E QLP +  +DP+A Y GL RGQVVKI
Sbjct: 159 DLLVNITRHELVPKHVLLSPEEKSKLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 218

Query: 240 SHSGEVFNSLVTYRCVV 190
               E      +YR V+
Sbjct: 219 IRKSETAGRYASYRWVI 235

[155][TOP]
>UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE
          Length = 239

 Score = 68.2 bits (165), Expect = 5e-10
 Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  V+++     I I +S ++P A + L       C+H +E     +++VN T      K
Sbjct: 121 NHFVDEQNYHTGIFITQSPISPSAVRLLTGIPGRFCEHFLE----QELLVNITHHELVPK 176

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           H++L+A  K+ LL +Y+++E QLP +   DP+A Y GL RGQVVKI    E      +YR
Sbjct: 177 HLLLSAEEKKRLLHRYRLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 236

Query: 198 CV 193
            V
Sbjct: 237 WV 238

[156][TOP]
>UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) =
           Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS
           513.88 RepID=A2QAL5_ASPNC
          Length = 235

 Score = 67.8 bits (164), Expect = 6e-10
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
 Frame = -1

Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
           N  V++      + I ++ ++P A + L +     C+H  E     D++VN T      K
Sbjct: 117 NHFVDENNFHTGVFITQTPISPSAVRLLSSMPGRICEHFQE----QDLLVNITRHELVPK 172

Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           HV+L+   K  LL++Y+++E QLP +  +DP+A Y GL RGQVVKI    E      +YR
Sbjct: 173 HVLLSPDEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYR 232

Query: 198 CVV 190
            V+
Sbjct: 233 WVI 235

[157][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Candida glabrata RepID=RPAB1_CANGA
          Length = 215

 Score = 67.8 bits (164), Expect = 6e-10
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           + +++    I I ++ +TP A K + +   A +E      +VVN T      KH+ L   
Sbjct: 100 IQEKQFQTGIFIYQNNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEE 159

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K ELLK+Y+++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 160 EKAELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212

[158][TOP]
>UniRef100_Q24FV0 RNA polymerase Rpb5, C-terminal domain containing protein n=1
           Tax=Tetrahymena thermophila SB210 RepID=Q24FV0_TETTH
          Length = 275

 Score = 67.4 bits (163), Expect = 8e-10
 Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
 Frame = -1

Query: 420 EIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLER 259
           EI   +D+V+N TKH      V L A  K++L+ KYKI + QLP +L TDP+  Y+GL  
Sbjct: 193 EIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFGLRT 252

Query: 258 GQVVKISHSGEVFNSLVTYRCV 193
            QV KI    E     +TYR V
Sbjct: 253 KQVFKIERDSETAGKYITYRIV 274

[159][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
           RepID=C5DNB3_LACTC
          Length = 215

 Score = 67.4 bits (163), Expect = 8e-10
 Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
           ++++     I + ++ +TP A K L +   A +E      +VVN T      KH+ L+  
Sbjct: 100 ISEKNFQTGIFVYQNGVTPSAMKLLPSVAPATIETFHEASLVVNITHHELVPKHIKLSDE 159

Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
            K+ELL++Y+++E QLP + R DP+A Y GL+RG VVKI    E      +YR
Sbjct: 160 EKKELLRRYRLKESQLPRIQRMDPVALYLGLKRGDVVKIIRKSETSGRYASYR 212

[160][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
           RepID=C5DR69_ZYGRC
          Length = 215

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
           I + ++ +TP A K + +   A +E      +VVN T      KH+  +   K+ELLK+Y
Sbjct: 109 IFVYQNNVTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRY 168

Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           +++E QLP + R DP+A Y GL+RG+VVKI    E      +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212

[161][TOP]
>UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
           RepID=A4QW70_MAGGR
          Length = 259

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELE---NCQHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLK 337
           IL+ +  ++  AR+ L    +  + VE   L D++VN T      KHV+L+   K+ LL+
Sbjct: 122 ILVTQGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLE 181

Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
           +Y+++E QLP +   DP+A Y GL+RG VVKI    E      +YR
Sbjct: 182 RYRLKETQLPRIQTKDPVARYLGLQRGNVVKIIRHSETAGRYASYR 227

[162][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8NU15_COPC7
          Length = 273

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
 Frame = -1

Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPT------KHVVLT 364
           I+ ++ + R I+I  + MT  ARK +      + +E     D++VN T      +H VL+
Sbjct: 156 IMEEKAIQRGIIIFPATMTSSARKVISAMASTYRLEEFAEADLLVNITHHTLVPRHEVLS 215

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
              K+ LL++Y++++ QLP +   DP+A YYGL RGQVVKI    E      +YR
Sbjct: 216 PEEKKTLLERYRLKDTQLPRIQPMDPVARYYGLRRGQVVKIIRPSETSGRYASYR 270

[163][TOP]
>UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium
           yoelii yoelii RepID=Q7RKX0_PLAYO
          Length = 112

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 33/99 (33%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
           ++++ + R IL+ ++ +TP+A+  ++    +H +E     +++VN TKH      + LT+
Sbjct: 10  MDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTS 69

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
             K+ LL++YKI+E +LP +   DP+  Y+GL +GQV K
Sbjct: 70  DEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVQK 108

[164][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
           RepID=A3AV22_ORYSJ
          Length = 217

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 21/130 (16%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
           + +E +   IL+V+  ++ +AR           LE  Q A  ++ + D  + P +H +LT
Sbjct: 89  MKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVP-EHELLT 147

Query: 363 AAGKQELLKKYKIEEKQ------------LPHMLRTDPMASYYGLERGQVVKISHSGEVF 220
              K+ LL++Y ++E Q            LP +  TDP+A YYG++RGQVVKI  + E  
Sbjct: 148 PEQKKTLLERYTVKETQILSLTQLVKCVNLPRIQITDPIARYYGMKRGQVVKIIRASETA 207

Query: 219 NSLVTYRCVV 190
              VTYR VV
Sbjct: 208 GRYVTYRYVV 217

[165][TOP]
>UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H038_CHAGB
          Length = 220

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
           IL+    ++  ARK +        +E     D++VN T      KHV+L+   K  LLK+
Sbjct: 113 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKR 172

Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           Y+++E QLP +L  DP+A Y GL++GQVVKI  + E      +YR  V
Sbjct: 173 YRLKETQLPRILSKDPIARYLGLKKGQVVKIIRTSETAGRYASYRLCV 220

[166][TOP]
>UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major
           RepID=Q4QDW4_LEIMA
          Length = 239

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361
           E   R++ +  SK  P  RK ++    +      E+ + +++ VN T      KH  L+ 
Sbjct: 123 EGYQRIVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSE 182

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
              +++L  + +E  QLP +L TDP+A YYGL RGQVV+I          VTYR VV
Sbjct: 183 EELRDVLHAHALELNQLPRILSTDPVARYYGLRRGQVVRIERKSMSAGLYVTYRQVV 239

[167][TOP]
>UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP
          Length = 216

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARK---ELENCQHAVEIIKLNDVVVNPT------KHVVLT 364
           + ++     I+++  K+T +A++    + +    +E    ++++VN T      KH +++
Sbjct: 98  IKQDGFQNSIIVLHGKLTSHAKQAINSINSLDDKIEYFSESELIVNITEHNLVPKHEIIS 157

Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
               + L K+Y I E QLP + + DP+A Y+GL++ Q++KI  S E     VTYR
Sbjct: 158 EEEARCLFKRYSIRENQLPRINKRDPIARYFGLQKNQIMKIIRSSETSGRYVTYR 212

[168][TOP]
>UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR
          Length = 234

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
           I I    ++  ARK +        VE     D++VN T      KHV+L+   K  LLK+
Sbjct: 127 IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKR 186

Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           Y+++E QLP +L  DP+A Y GL+RGQVVKI    E      +YR  V
Sbjct: 187 YRLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234

[169][TOP]
>UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0UZB4_PHANO
          Length = 277

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
 Frame = -1

Query: 423 VEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
           +E+    D++VN TKH      V+L+A  K +LL +Y+++E QLP +  TDP+A + GL 
Sbjct: 194 IEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLTRYRLKETQLPRIQSTDPVAKFLGLR 253

Query: 261 RGQVVKISHSGEVFNSLVTYRCVV 190
           RG VVKI    E      +YR V+
Sbjct: 254 RGSVVKIIRKSETAGRYASYRWVI 277

[170][TOP]
>UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
           braziliensis RepID=A4H9I9_LEIBR
          Length = 239

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361
           E   R++ +  SK  P  RK ++    +      E+ + +++ VN T      KH  L+ 
Sbjct: 123 EGYQRVVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSE 182

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
              +++L  + +E  QLP +L TDP+A YYGL+RGQVV+I          VTYR VV
Sbjct: 183 EELKDVLHAHALELHQLPRILSTDPVARYYGLKRGQVVRIERKSMSAGLYVTYRQVV 239

[171][TOP]
>UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi
           RepID=Q8T1Q5_TRYCR
          Length = 219

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
 Frame = -1

Query: 564 TDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLND 400
           ++ +    +   H Q  ++    R+I++V+ ++    ++ +E+   +     +++   +D
Sbjct: 85  SEGLSMETMKRYHTQ-ASEANCDRVIIVVQGRINAIVKRHVEDINRSSLGLKIQLFDEDD 143

Query: 399 VVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           +VVN T      KH  L     +E+L+ + +E   LP +L TDP+A+Y GLERG+VV+I 
Sbjct: 144 LVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRILSTDPVAAYLGLERGRVVRIE 203

Query: 237 HSGEVFNSLVTYRCVV 190
                    VTYR VV
Sbjct: 204 RKSMSAGFYVTYRQVV 219

[172][TOP]
>UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
           infantum RepID=A4HXV2_LEIIN
          Length = 239

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
 Frame = -1

Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361
           E   R++ +  SK  P  RK ++    +      E+ + +++ VN T      KH  L+ 
Sbjct: 123 EGYQRVVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHSPLSE 182

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
               ++L+ + +E  QLP +L TDP+A YYGL+RGQVV+I          VTYR VV
Sbjct: 183 EELTDVLQAHALELNQLPRILSTDPVARYYGLKRGQVVRIERKSMSAGLYVTYRQVV 239

[173][TOP]
>UniRef100_A2DEU9 RNA polymerase Rpb5, C-terminal domain containing protein n=1
           Tax=Trichomonas vaginalis G3 RepID=A2DEU9_TRIVA
          Length = 217

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
 Frame = -1

Query: 453 RKELENCQHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRT 292
           +K+L      +E   L ++  N T      KH VL+   K EL  +YKI+E +LP +L T
Sbjct: 124 KKQLRLIGKKLETFTLQELQYNITMHFFVPKHKVLSNEEKNELFNRYKIDETKLPQILST 183

Query: 291 DPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           DP+  YYG + G +++I+   E    +VTYR V+
Sbjct: 184 DPVVRYYGADPGAIIEITRRSETCGRVVTYRLVI 217

[174][TOP]
>UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina
           RepID=B2AZ24_PODAN
          Length = 235

 Score = 64.3 bits (155), Expect = 7e-09
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
 Frame = -1

Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPTKH------VVLTAAGKQELLKK 334
           IL+    ++  ARK +        +E     D++VN T H      ++L+   K  LLK+
Sbjct: 128 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKR 187

Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           Y+++E QLP +L+ DP+A Y GL+RGQVVKI    E      +YR  V
Sbjct: 188 YRLKETQLPRILQKDPIARYLGLKRGQVVKIVRISETAGRYASYRLCV 235

[175][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
           n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
          Length = 278

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 8/101 (7%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
           ++ Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      
Sbjct: 89  VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148

Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
           VV+T     ELL +YK+ E QLP +   DP+A Y+G++RGQ
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQ 189

[176][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
           isoform 1 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A3E0E
          Length = 208

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
           ++ Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      
Sbjct: 89  VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148

Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
           VV+T     ELL +YK+ E QLP +   D  A Y+G  + +VVKI    E     +TYR 
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFG--KSEVVKIIRPSETAGRYITYRL 206

Query: 195 V 193
           V
Sbjct: 207 V 207

[177][TOP]
>UniRef100_Q4YN14 Putative uncharacterized protein n=1 Tax=Plasmodium berghei
           RepID=Q4YN14_PLABE
          Length = 117

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
 Frame = -1

Query: 396 VVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISH 235
           VVN TKH      + LT+  K+ LL++YKI+E +LP +   DP+  Y+GL +GQVVKI  
Sbjct: 16  VVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIR 75

Query: 234 SGEVFNSLVTYRCVV 190
             E     VTYR V+
Sbjct: 76  PSETAGRYVTYRLVM 90

[178][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
           polymerases I, II, and III subunit ABC1) (DNA-directed
           RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
           polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
           lupus familiaris RepID=UPI0000EB19D6
          Length = 212

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
 Frame = -1

Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
           ++ Q + +E ++R +++V+  MTP A++ L +   ++ +E     ++++N T+H      
Sbjct: 89  VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148

Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERG--QVVKISHSGEVFNSLVTY 202
           VV+T     ELL +YK+ E QLP +   D  A Y+G      QVVKI    E     +TY
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFGKSEADPQVVKIIRPSETAGRYITY 208

Query: 201 RCV 193
           R V
Sbjct: 209 RLV 211

[179][TOP]
>UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative
           (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5LN15_9ALVE
          Length = 168

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361
           + ++RLSR IL+V+  +T +A+  ++    Q  +E+   +++VVN T H +      LTA
Sbjct: 63  MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTA 122

Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
             K+ LL++YK++E QLP +  +DP           V+KI    E     VTYR  V
Sbjct: 123 EEKRLLLERYKVKENQLPRIQSSDP-----------VMKIIRPSETAGRYVTYRLCV 168

[180][TOP]
>UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1
           Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH
          Length = 202

 Score = 60.8 bits (146), Expect = 7e-08
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
 Frame = -1

Query: 573 FTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVV 394
           FT  D + K  +  I     N+  +S+LILI  +K+   A   L+    ++E+    D++
Sbjct: 69  FTSNDKLSKKQIETIITDYSNQS-ISKLILISCNKLNHAALAYLDKSNFSIELFLYKDIL 127

Query: 393 VNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
            NPTKH+      +++   K  LL   K     LP +L+ D +A Y G E   V++I+  
Sbjct: 128 FNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPIILKKDVIAKYLGAELNDVIEITRK 187

Query: 231 GEVFNSLVTYRCV 193
            +       YR V
Sbjct: 188 SKTTGESKYYRVV 200

[181][TOP]
>UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE
          Length = 223

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
 Frame = -1

Query: 429 HAVEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYG 268
           ++ E+   +D+V + TKH      ++L    K+ LLKKY + + QLP +L++DP+A + G
Sbjct: 138 YSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGLVDNQLPRILQSDPIARFLG 197

Query: 267 LERGQVVKISHSGEVFNSLVTYRCVV 190
           L  G VVKI    E     VTYR  +
Sbjct: 198 LHHGDVVKIIRKSETAGLYVTYRIAI 223

[182][TOP]
>UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
           RepID=C4VBP1_NOSCE
          Length = 204

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
 Frame = -1

Query: 573 FTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVV 394
           F   + I KS++  +  +      +  LIL++  KM+  ++  +      +EI K  +++
Sbjct: 65  FIDDEKIGKSSIEKVI-ETYKSINIYHLILVINQKMSSASQNIVNVSDLKIEIFKDEELM 123

Query: 393 VNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
            N TKHV      +L    K  +L+K KI   Q+P +L+ DP+  + G E GQVV+I+  
Sbjct: 124 FNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKILKRDPVCRFLGAESGQVVEITRK 183

Query: 231 GEVFNSLVTYRCV 193
                  + Y+ V
Sbjct: 184 SRTAGESIFYKVV 196

[183][TOP]
>UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE
          Length = 224

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
 Frame = -1

Query: 429 HAVEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYG 268
           ++ E+   +D+V + TKH      ++L    K+ LLKKY + + QLP +L++DP+A + G
Sbjct: 139 YSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPRILQSDPIARFLG 198

Query: 267 LERGQVVKISHSGEVFNSLVTYRCVV 190
           L  G VVKI    E     VTYR  +
Sbjct: 199 LHHGDVVKIIRKSETAGLYVTYRIAI 224

[184][TOP]
>UniRef100_C5YQI4 Putative uncharacterized protein Sb08g001130 n=1 Tax=Sorghum
           bicolor RepID=C5YQI4_SORBI
          Length = 274

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 29/75 (38%), Positives = 45/75 (60%)
 Frame = -1

Query: 417 IIKLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
           ++ +   V+ P KH VLT   K +L K Y + +  LP ML +D +A Y G  +G VVK++
Sbjct: 200 LVNITKHVLKP-KHEVLTVEEKVKLQKDYNVVDSHLPLMLESDAVAHYQGFRQGTVVKVT 258

Query: 237 HSGEVFNSLVTYRCV 193
           +  E+  + VTYRC+
Sbjct: 259 YDNELTGNHVTYRCI 273

[185][TOP]
>UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1
           Tax=Trypanosoma brucei RepID=Q388R5_9TRYP
          Length = 219

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
 Frame = -1

Query: 495 RLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTAAGKQ 349
           R+I++   K+    ++ ++    +     V++   +D+VVN T      KH  L     +
Sbjct: 107 RVIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVK 166

Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           E+L+ + +E   LP +L TDP+A+Y GLERG+VV+I          VTYR VV
Sbjct: 167 EMLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQVV 219

[186][TOP]
>UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2
           Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG
          Length = 219

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
 Frame = -1

Query: 495 RLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTAAGKQ 349
           R+I++   K+    ++ ++    +     V++   +D+VVN T      KH  L     +
Sbjct: 107 RVIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVK 166

Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
           E+L+ + +E   LP +L TDP+A+Y GLERG+VV+I          VTYR VV
Sbjct: 167 EMLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQVV 219

[187][TOP]
>UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
           1980 UF-70 RepID=A7ECH0_SCLS1
          Length = 242

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
 Frame = -1

Query: 423 VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
           +E     D++VN T      KHV+L+   + +LL +Y++++ QLP +   DP+A Y GL 
Sbjct: 158 IETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYRLKDTQLPRIQAADPVAKYLGLR 217

Query: 261 RGQVVKISHSGEVFNSLVTYR 199
           RGQVVKI    E      +YR
Sbjct: 218 RGQVVKIIRKSETAGRYASYR 238

[188][TOP]
>UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
           B05.10 RepID=A6SPK6_BOTFB
          Length = 242

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
 Frame = -1

Query: 423 VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
           +E     D++VN T      KHV+L+   + +LL +Y++++ QLP +   DP+A Y GL 
Sbjct: 158 IETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYRLKDTQLPRIQAADPVAKYLGLR 217

Query: 261 RGQVVKISHSGEVFNSLVTYR 199
           RGQVVKI    E      +YR
Sbjct: 218 RGQVVKIIRKSETAGRYASYR 238

[189][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
           RepID=Q9LUR5_ARATH
          Length = 178

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
 Frame = -1

Query: 423 VEIIKLNDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
           +E+ +  +++VN  +HV       LT   KQ+ L++ +     LP +  TDP+A Y+GL+
Sbjct: 95  IEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLERKRTRFVVLPRIHVTDPIARYFGLK 154

Query: 261 RGQVVKISHSGEVFNSLVTYRCVV 190
           RG+VVKIS   E     +TYR V+
Sbjct: 155 RGEVVKISRLSETSGRYITYRYVI 178

[190][TOP]
>UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SWJ6_PHYPA
          Length = 211

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361
           + +E + R + +V+  +TP +++ +     ++ +E+    + +VN T+      H +LT 
Sbjct: 91  MKRENVPRAVFVVQQHITPLSKQYISRKAQKYHLEVFLEPEFLVNITECYLVPLHEILTP 150

Query: 360 AGKQELLKKYK----IEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
             K  LL++Y     +    LP M   DP+A YYG+  GQVVKI  S E     VTYR  
Sbjct: 151 EEKNTLLERYTEGNPVMLVLLPWMQHNDPVARYYGINPGQVVKIIQSSETAGRYVTYRLF 210

Query: 192 V 190
           V
Sbjct: 211 V 211

[191][TOP]
>UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE
          Length = 176

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
 Frame = -1

Query: 402 DVVVNPTKHVVL------TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK- 244
           ++VVN TKH ++      T   K  LL++YK++E+QLP +  TDP+A Y GL+RGQVVK 
Sbjct: 99  ELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIKVTDPIARYLGLKRGQVVKI 158

Query: 243 ISHSGEVFNSLVTYRCV 193
           I  +       V+YR V
Sbjct: 159 IRENSPTAGRYVSYRLV 175

[192][TOP]
>UniRef100_UPI000155C2F2 PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide E, 25kDa n=1 Tax=Ornithorhynchus anatinus
           RepID=UPI000155C2F2
          Length = 60

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 26/52 (50%), Positives = 34/52 (65%)
 Frame = -1

Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           ELL +YK+ E QLP +   DP+A Y+G++RGQVVKI    E     +TYR V
Sbjct: 8   ELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 59

[193][TOP]
>UniRef100_A7QJL5 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QJL5_VITVI
          Length = 67

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 25/40 (62%), Positives = 32/40 (80%)
 Frame = -1

Query: 312 LPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
           LP ML+ D +A YYGLE+GQVVK+ ++GE+  S VTYRCV
Sbjct: 27  LPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 66

[194][TOP]
>UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide E, partial n=1 Tax=Hydra magnipapillata
           RepID=UPI0001925DCF
          Length = 187

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 30/90 (33%), Positives = 52/90 (57%)
 Frame = -1

Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVVVNPTKHVVLTAAGKQELLK 337
           + +E ++R I++V++ MTP A++ +                    +HVVL+   K ELL 
Sbjct: 78  MQEEGINRAIIVVQTGMTPSAKQLVP-------------------EHVVLSPEEKAELLT 118

Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVV 247
           +YK+++ QLP + + D +A Y+GL+RGQ V
Sbjct: 119 RYKLKDHQLPRIQQGDTIARYFGLKRGQFV 148

[195][TOP]
>UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans
           RepID=Q3LW39_BIGNA
          Length = 204

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
 Frame = -1

Query: 423 VEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
           +EI    ++++NP KH      V+L    K+++LK Y +++ QLP +  +DP++ YYG +
Sbjct: 121 IEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIKLSDPISKYYGAK 180

Query: 261 RGQVVKISHSGEVFNSLVTYRCV 193
           +G + KI    E     ++YR +
Sbjct: 181 KGNMFKIIRFSENIGVYLSYRII 203