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[1][TOP]
>UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
Tax=Medicago truncatula RepID=Q2HW77_MEDTR
Length = 224
Score = 199 bits (505), Expect = 2e-49
Identities = 103/137 (75%), Positives = 117/137 (85%), Gaps = 6/137 (4%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403
QVVF GTD+IRKSNL I +QIV+KERLSRLIL+++SKMT YARKELENC VEII+LN
Sbjct: 88 QVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELENCPFKVEIIQLN 147
Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
D++VN TKHV VLTA KQ+LL KYK+EEKQLPHMLRTD +ASYYGLE+GQVVKI
Sbjct: 148 DLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLPHMLRTDAIASYYGLEKGQVVKI 207
Query: 240 SHSGEVFNSLVTYRCVV 190
SHSGE+FNSLV YRCVV
Sbjct: 208 SHSGEMFNSLVMYRCVV 224
[2][TOP]
>UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR
Length = 233
Score = 144 bits (362), Expect = 7e-33
Identities = 69/135 (51%), Positives = 100/135 (74%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
V+F GTD I+ +N+ ++ QI+NKE L LILI++SKM +A+KELE VE+ ++ D
Sbjct: 98 VMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFPFKVEVFQITD 157
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKHV +LTA KQ+++ KYK+E+KQLP ML +D + YYGL++GQ+VKI+
Sbjct: 158 LLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQLPRMLESDAIVQYYGLQKGQMVKIT 217
Query: 237 HSGEVFNSLVTYRCV 193
+SGE+ + LVTYRCV
Sbjct: 218 YSGEIVDHLVTYRCV 232
[3][TOP]
>UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RGC5_RICCO
Length = 239
Score = 136 bits (342), Expect = 1e-30
Identities = 74/135 (54%), Positives = 96/135 (71%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
VVF GT+ I+ +N+ + QI NKE L+ LILI++SKM YARKEL VEI ++D
Sbjct: 104 VVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSKVEIFHISD 163
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKHV VLTA KQ+LL K+ E+KQLP ML TD ++ YYG E+GQVVKI+
Sbjct: 164 LLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRMLVTDAISRYYGFEKGQVVKIT 223
Query: 237 HSGEVFNSLVTYRCV 193
+SG + +SLVTYRCV
Sbjct: 224 YSGGLVDSLVTYRCV 238
[4][TOP]
>UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9ST46_RICCO
Length = 238
Score = 125 bits (314), Expect = 2e-27
Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
V+F G I+ S + AI QIVNK+ L+ LIL++++++T A K ++ + VE+ ++ D
Sbjct: 103 VLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITD 162
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKHV VLT KQ+LLK Y IEEKQLP +LR D +A YYGLE+GQVVK++
Sbjct: 163 LLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRLLRKDAIARYYGLEKGQVVKVT 222
Query: 237 HSGEVFNSLVTYRCV 193
+SGE+ S VTYRCV
Sbjct: 223 YSGEITESHVTYRCV 237
[5][TOP]
>UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR
Length = 248
Score = 125 bits (313), Expect = 3e-27
Identities = 67/135 (49%), Positives = 93/135 (68%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
VVF+G ++ + + I QIVN+E L+ LILIV++++T A K + VEI ++ D
Sbjct: 113 VVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITD 172
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKHV VLT K+ LLKKY I+EKQLP ML+TD +A YYGL+RGQVVK++
Sbjct: 173 LLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQTDAIARYYGLQRGQVVKVT 232
Query: 237 HSGEVFNSLVTYRCV 193
++GE+ VTYRCV
Sbjct: 233 YTGEITQMHVTYRCV 247
[6][TOP]
>UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence
n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI
Length = 221
Score = 124 bits (312), Expect = 4e-27
Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
VVF GTD IRK+ + I QI N+E L RLIL+++SKM +ARK ++ VE ++ +
Sbjct: 87 VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 145
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
+++N TKHV +L+A K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+
Sbjct: 146 LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKIT 205
Query: 237 HSGEVFNSLVTYRCV 193
+ G + +SLVTYRCV
Sbjct: 206 YKGGMTDSLVTYRCV 220
[7][TOP]
>UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001985D3D
Length = 1260
Score = 124 bits (311), Expect = 5e-27
Identities = 65/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
VVF GTD IRK+ + I QI N+E L RLIL+++SKM +ARK ++ VE ++ +
Sbjct: 87 VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 145
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
+++N TKHV +L+A K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+
Sbjct: 146 LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQKDDAIARYYGLEKGQVVKIT 205
Query: 237 HSGEVFNSLVTYRCV 193
+ G + +SLVTYRC+
Sbjct: 206 YKGGMTDSLVTYRCI 220
[8][TOP]
>UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B0H1_VITVI
Length = 162
Score = 124 bits (311), Expect = 5e-27
Identities = 66/135 (48%), Positives = 95/135 (70%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
VVF GTD IRK+ + I QI N+E L RLIL+++SKM +ARK ++ VE ++ +
Sbjct: 28 VVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVEFFQITE 86
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
+++N TKHV +L+A K++L+ KYK+E+KQ P M + D +A YYGLE+GQVVKI+
Sbjct: 87 LLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQKDDAIARYYGLEKGQVVKIT 146
Query: 237 HSGEVFNSLVTYRCV 193
+ G + +SLVTYRCV
Sbjct: 147 YKGGMTDSLVTYRCV 161
[9][TOP]
>UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXN9_SOYBN
Length = 237
Score = 122 bits (305), Expect = 3e-26
Identities = 68/135 (50%), Positives = 89/135 (65%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
V+F G ++ + + QI+N++ L+ LILIVE+ +T A K + VEI ++ D
Sbjct: 102 VIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITD 161
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKHV VLT K LLKKY IEEKQLP ML+TD +A YYGLERGQVVK++
Sbjct: 162 LLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVT 221
Query: 237 HSGEVFNSLVTYRCV 193
+SGEV VTYRCV
Sbjct: 222 YSGEVTQMHVTYRCV 236
[10][TOP]
>UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QJL2_VITVI
Length = 229
Score = 122 bits (305), Expect = 3e-26
Identities = 64/135 (47%), Positives = 92/135 (68%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
V+F G D ++ + + +I QIVNK+ LS+LIL++++ +T A K ++ VE ++ D
Sbjct: 94 VIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFSFQVEKFQITD 153
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKHV VLT K +LLKKY + EKQLP ML+ D +A YYGLE+GQVVK+
Sbjct: 154 LLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRMLQQDAIARYYGLEKGQVVKVI 213
Query: 237 HSGEVFNSLVTYRCV 193
++GE+ S VTYRCV
Sbjct: 214 YNGEITGSHVTYRCV 228
[11][TOP]
>UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR
Length = 216
Score = 116 bits (290), Expect = 1e-24
Identities = 59/135 (43%), Positives = 90/135 (66%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
V+F G ++ + I QI +++ L+ LIL++++ +T A K L+ + +EI ++ D
Sbjct: 81 VIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLFKFKIEIFQITD 140
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKH+ VL+ KQ LLKKY IEEKQLP +L+ D ++ YYGLERGQVVK++
Sbjct: 141 LLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRLLKKDAISRYYGLERGQVVKVT 200
Query: 237 HSGEVFNSLVTYRCV 193
+ G++ S VTYRCV
Sbjct: 201 YDGDITGSHVTYRCV 215
[12][TOP]
>UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis
thaliana RepID=Q9M1H8_ARATH
Length = 233
Score = 107 bits (268), Expect = 5e-22
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 6/136 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
VVF GT+ I ++ A+H QI N L +IL+++SKM +A+K L VE + D
Sbjct: 98 VVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFPFTVETFPIED 157
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKH+ +L K++LL+K+ +E+KQLP++ D YYGL++ QVVKI+
Sbjct: 158 LLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKIT 217
Query: 237 HSGEVFNSLVTYRCVV 190
+S E VTYRC++
Sbjct: 218 YSKEPVGDFVTYRCII 233
[13][TOP]
>UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1
Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH
Length = 218
Score = 107 bits (266), Expect = 9e-22
Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 6/135 (4%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
VVF GT ++ + + I ++++E ++ LIL+++S +T A K +E VE+ ++ D
Sbjct: 83 VVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFKVELFEITD 142
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN +KHV VL K+ LLKK+ IEEKQLP + DP+ YYGLE GQV+K++
Sbjct: 143 LLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKVT 202
Query: 237 HSGEVFNSLVTYRCV 193
+ E+ S VTYRCV
Sbjct: 203 YKDELSESHVTYRCV 217
[14][TOP]
>UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis
thaliana RepID=Q9M1J2_ARATH
Length = 222
Score = 102 bits (255), Expect = 2e-20
Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403
++VF GT ++ + + ++ I+++E ++ LIL++++ +T A K +E VEI ++
Sbjct: 86 KIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQIT 145
Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
D++VN TKH VL K LLKK+ IEEKQLP + + D + YYGLE+GQVVK+
Sbjct: 146 DLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKV 205
Query: 240 SHSGEVFNSLVTYRCV 193
++ GE+ S V +RCV
Sbjct: 206 NYRGELTESHVAFRCV 221
[15][TOP]
>UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1
Tax=Arabidopsis thaliana RepID=Q8L947_ARATH
Length = 222
Score = 102 bits (255), Expect = 2e-20
Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLN 403
++VF GT ++ + + ++ I+++E ++ LIL++++ +T A K +E VEI ++
Sbjct: 86 KIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFSFKVEIFQIT 145
Query: 402 DVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
D++VN TKH VL K LLKK+ IEEKQLP + + D + YYGLE+GQVVK+
Sbjct: 146 DLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKV 205
Query: 240 SHSGEVFNSLVTYRCV 193
++ GE+ S V +RCV
Sbjct: 206 NYRGELTESHVAFRCV 221
[16][TOP]
>UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA
Length = 223
Score = 101 bits (251), Expect = 5e-20
Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 7/135 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLND 400
VVF G+ ++ S + I ++ +E L+ LIL+++S +T A K +E VE+ +L +
Sbjct: 87 VVFCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFSFKVELFQLTE 146
Query: 399 VVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++VN TKHV VL K+ L KK+ I+E+QLP +L+ DP A YYGLE+GQVV+++
Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKLLKKDPTAKYYGLEKGQVVEVT 206
Query: 237 HSGEVFNS-LVTYRC 196
+ GE S V+YRC
Sbjct: 207 YKGEGSESDHVSYRC 221
[17][TOP]
>UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q2QXY2_ORYSJ
Length = 335
Score = 101 bits (251), Expect = 5e-20
Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 7/137 (5%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
Q+VF + ++ + + I+ Q +E LSRL+LI++SK+ AR+ ++ + V+I +
Sbjct: 199 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 257
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
D++VN TKHV VL+A K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK
Sbjct: 258 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 317
Query: 243 ISHSGEVFNSLVTYRCV 193
+++ GE+ V YRCV
Sbjct: 318 VTYDGELTGKRVAYRCV 334
[18][TOP]
>UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ
Length = 227
Score = 101 bits (251), Expect = 5e-20
Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 7/137 (5%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
Q+VF + ++ + + I+ Q +E LSRL+LI++SK+ AR+ ++ + V+I +
Sbjct: 91 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
D++VN TKHV VL+A K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK
Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209
Query: 243 ISHSGEVFNSLVTYRCV 193
+++ GE+ V YRCV
Sbjct: 210 VTYDGELTGKRVAYRCV 226
[19][TOP]
>UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q2RAP1_ORYSJ
Length = 227
Score = 100 bits (248), Expect = 1e-19
Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 7/137 (5%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
Q+VF + ++ + + I+ Q +E LSRL+LI++SK+ AR+ ++ + V+I +
Sbjct: 91 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
D++VN TKHV VL+A K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK
Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209
Query: 243 ISHSGEVFNSLVTYRCV 193
+ + GE+ V YRCV
Sbjct: 210 VIYDGELTGKRVAYRCV 226
[20][TOP]
>UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2ZBC5_ORYSI
Length = 227
Score = 100 bits (248), Expect = 1e-19
Identities = 56/137 (40%), Positives = 87/137 (63%), Gaps = 7/137 (5%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
Q+VF + ++ + + I+ Q +E LSRL+LI++SK+ AR+ ++ + V+I +
Sbjct: 91 QLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRAREAIKEIFKFKVDIFQA 149
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
D++VN TKHV VL+A K +LLK+Y +E+ QLP ML TD +A YYG ++G VVK
Sbjct: 150 TDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRMLETDAVARYYGFDKGTVVK 209
Query: 243 ISHSGEVFNSLVTYRCV 193
+ + GE+ V YRCV
Sbjct: 210 VIYDGELTGKRVAYRCV 226
[21][TOP]
>UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
RepID=B6TJI5_MAIZE
Length = 264
Score = 93.6 bits (231), Expect = 1e-17
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
+VVF ++ + + I+ + V E LSRLILI++ K+ R+ ++ + V+ ++
Sbjct: 128 KVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQI 186
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
+++VN TKHV VLTA GK +LLK+Y + + QLP ML D +A YYGL +G VVK
Sbjct: 187 TELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 246
Query: 243 ISHSGEVFNSLVTYRCV 193
+ + E+ + VTYRC+
Sbjct: 247 VIYDSELTGNHVTYRCI 263
[22][TOP]
>UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FYH9_MAIZE
Length = 248
Score = 93.6 bits (231), Expect = 1e-17
Identities = 53/137 (38%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
+VVF ++ + + I+ + V E LSRLILI++ K+ R+ ++ + V+ ++
Sbjct: 112 KVVFCPPGPVKIAAIRLIYTE-VKDENLSRLILILQGKIMSTTRESIKEIFRFKVDTFQI 170
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
+++VN TKHV VLTA GK +LLK+Y + + QLP ML D +A YYGL +G VVK
Sbjct: 171 TELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 230
Query: 243 ISHSGEVFNSLVTYRCV 193
+ + E+ + VTYRC+
Sbjct: 231 VIYDSELTGNHVTYRCI 247
[23][TOP]
>UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum
bicolor RepID=C5Y4H1_SORBI
Length = 263
Score = 89.0 bits (219), Expect = 3e-16
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 7/137 (5%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKL 406
+VVF + ++ + + ++ V E LSRLILI++ ++ AR+ ++ + V+ ++
Sbjct: 127 KVVFCPPEPVKIAAIRVVYTG-VKDENLSRLILILQGRIMSKAREAIKEIFPYKVDTFQI 185
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
+++VN TKH VLTA K +LLK+Y + + QLP ML D +A YYGL +G VVK
Sbjct: 186 TELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRMLENDAVARYYGLGKGTVVK 245
Query: 243 ISHSGEVFNSLVTYRCV 193
+ + E+ + VTYRC+
Sbjct: 246 VIYDSELTGNHVTYRCI 262
[24][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
RepID=Q5DDM1_SCHJA
Length = 206
Score = 86.3 bits (212), Expect = 2e-15
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELE--NCQHAVEIIKL 406
V F + + + A NQ+ ++++ E +TP A+ + +C++ +E
Sbjct: 69 VFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFE 128
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
N+++VN T+H VLT K+ELL++Y+++E QLP M +DP+A YYGL RGQVV+
Sbjct: 129 NELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVR 188
Query: 243 ISHSGEVFNSLVTYRCVV 190
I+ E +TYR V+
Sbjct: 189 ITRPSETAGRYITYRIVL 206
[25][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
Length = 208
Score = 86.3 bits (212), Expect = 2e-15
Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 8/138 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELE--NCQHAVEIIKL 406
V F + + + A NQ+ ++++ E +TP A+ + +C++ +E
Sbjct: 71 VFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLECFFE 130
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
N+++VN T+H VLT K+ELL++Y+++E QLP M +DP+A YYGL RGQVV+
Sbjct: 131 NELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQASDPVARYYGLRRGQVVR 190
Query: 243 ISHSGEVFNSLVTYRCVV 190
I+ E +TYR V+
Sbjct: 191 ITRPSETAGRYITYRIVL 208
[26][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
guineensis RepID=B3TLL2_ELAGV
Length = 204
Score = 85.9 bits (211), Expect = 2e-15
Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 8/114 (7%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHV------VLTAAGK 352
E ++R IL+V+ +TP+AR+ L ++ +E+ + +++VN +HV VLT+ K
Sbjct: 91 ENVTRGILVVQQALTPFARQSLAEVSQKYMLEVFQDTELLVNIKEHVLVPEHQVLTSEEK 150
Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+ LL++Y ++E QLP + TDP+A YYGL+RGQVVKI E VTYR VV
Sbjct: 151 KTLLERYTLKETQLPRIQVTDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 204
[27][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
Length = 213
Score = 85.5 bits (210), Expect = 3e-15
Identities = 46/117 (39%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361
+ ++RLSR IL+V+ +T +A+ ++ Q +E+ +++VVN T H + LTA
Sbjct: 97 MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTA 156
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++YK++E QLP + +DP+A YYGL++GQV+KI E VTYR V
Sbjct: 157 EEKRLLLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213
[28][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
Length = 210
Score = 84.7 bits (208), Expect = 5e-15
Identities = 47/117 (40%), Positives = 75/117 (64%), Gaps = 8/117 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E ++R I++V+S MTP A++ L + ++ +E +++++N T+H VV+T
Sbjct: 94 MQEENITRAIILVQSGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ELLKKYK++E QL + DP+A YYGL+RGQVVKI E ++YR VV
Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLVV 210
[29][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9ETS9_ORYSJ
Length = 210
Score = 84.3 bits (207), Expect = 6e-15
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV--EIIKL 406
V F D + ++ + +++ E +SR +L+++ +TP+AR L+ + + EI +
Sbjct: 74 VFFPNDDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQE 132
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
++++N +HV VL K+ LL++Y ++E QLP + TDP+A YYGL RGQVVK
Sbjct: 133 AELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192
Query: 243 ISHSGEVFNSLVTYRCVV 190
I E VTYR VV
Sbjct: 193 IIRPSETAGRYVTYRYVV 210
[30][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
RepID=B4FU06_MAIZE
Length = 210
Score = 84.3 bits (207), Expect = 6e-15
Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 9/139 (6%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARK---------ELENCQH 427
V F D + ++ + +++ E +SR +L+++ +TP+A+ LE Q
Sbjct: 74 VFFPNDDKVGMKHIKK-YVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQE 132
Query: 426 AVEIIKLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVV 247
A +I + + V+ P +H VLT K+ LL++Y ++E QLP + TDP+A YYGL RGQVV
Sbjct: 133 AEMLINIKEHVLVP-EHQVLTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVV 191
Query: 246 KISHSGEVFNSLVTYRCVV 190
KI E VTYR VV
Sbjct: 192 KIIRPSETAGRYVTYRYVV 210
[31][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXZ4_SOYBN
Length = 206
Score = 84.0 bits (206), Expect = 8e-15
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
+N E + R IL+ ++ +TP+AR LE Q A ++ + + + P +H VLT
Sbjct: 90 MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVP-EHQVLT 148
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
A K+ LL++Y ++E QLP + TDP+A YYGL+RGQVVKI E VTYR VV
Sbjct: 149 DAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206
[32][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SVA4_SOYBN
Length = 206
Score = 84.0 bits (206), Expect = 8e-15
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
+N E + R IL+ ++ +TP+AR LE Q A ++ + + + P +H VLT
Sbjct: 90 MNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVP-EHQVLT 148
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
A K+ LL++Y ++E QLP + TDP+A YYGL+RGQVVKI E VTYR VV
Sbjct: 149 DAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 206
[33][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
Length = 210
Score = 84.0 bits (206), Expect = 8e-15
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV--EIIKL 406
V F D + ++ + +++ E +SR +L+++ +TP+AR L+ + + EI +
Sbjct: 74 VFFPNDDKVGMKHIKK-YVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQE 132
Query: 405 NDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
++++N +HV VL K+ LL++Y ++E QLP + TDP+A YYGL RGQVVK
Sbjct: 133 AELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVK 192
Query: 243 ISHSGEVFNSLVTYRCVV 190
I E VTYR VV
Sbjct: 193 IIRPSETAGRYVTYRYVV 210
[34][TOP]
>UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FEX9_MAIZE
Length = 127
Score = 84.0 bits (206), Expect = 8e-15
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVV 370
+++ E +SR +L+++ +TP+A+ LE Q A +I + + V+ P +H V
Sbjct: 9 EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVP-EHQV 67
Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
LT K+ LL++Y ++E QLP + TDP+A YYGL RGQVVKI E VTYR VV
Sbjct: 68 LTNEEKKTLLERYTLKETQLPRIQITDPIARYYGLRRGQVVKIIRPSETAGRYVTYRYVV 127
[35][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWG5_PHYPA
Length = 208
Score = 84.0 bits (206), Expect = 8e-15
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 9/115 (7%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355
E + R IL+V+ +TP+AR+ LE Q A ++ + + V+ P H VLT
Sbjct: 95 ENVHRAILVVQQNLTPFARQCVSEMASKYHLEVFQEAELLVNIKEHVLVPL-HEVLTPDE 153
Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++Y ++E QLP M DP+A YYGL+RGQVVKI E VTYR VV
Sbjct: 154 KKTLLERYTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 208
[36][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RKG6_PHYPA
Length = 208
Score = 84.0 bits (206), Expect = 8e-15
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 9/115 (7%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355
E + R IL+V+ +TP+AR+ +E Q A ++ + D V+ P +H VL A
Sbjct: 95 ENVHRAILVVQQNLTPFARQCVSEMSSKYHVEVFQEAELLVNIKDHVLVP-QHEVLNAEE 153
Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K LL++Y ++E QLP M DP+A YYGL+RGQVVKI E VTYR VV
Sbjct: 154 KITLLQRYTVKETQLPRMQENDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV 208
[37][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus clemensi RepID=C1C1G9_9MAXI
Length = 210
Score = 84.0 bits (206), Expect = 8e-15
Identities = 46/117 (39%), Positives = 75/117 (64%), Gaps = 8/117 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E ++R I++V++ MTP A++ L + ++ +E +++++N T+H VV+T
Sbjct: 94 MQEENITRAIIVVQAGMTPSAKQSLMDMAPKYILEQFLESELLINLTEHDLVPEHVVMTP 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ELLKKYK++E QL + DP+A YYGL+RGQVVKI E ++YR VV
Sbjct: 154 EEKKELLKKYKLKENQLMRIQAGDPVARYYGLKRGQVVKIIRPSETAGRYISYRLVV 210
[38][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XGH1_CAEBR
Length = 211
Score = 84.0 bits (206), Expect = 8e-15
Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 8/119 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + ++ +SR I++V++ MTP A++ + + ++ +E +++VN T+H VV+
Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
TA K ELL +YK+++ QLP + + DP+A Y+GL RGQVVKI E +TYR VV
Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211
[39][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
Length = 211
Score = 84.0 bits (206), Expect = 8e-15
Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 8/119 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + ++ +SR I++V++ MTP A++ + + ++ +E +++VN T+H VV+
Sbjct: 93 QQMQEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLEAELMVNITEHELVPEHVVM 152
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
TA K ELL +YK+++ QLP + + DP+A Y+GL RGQVVKI E +TYR VV
Sbjct: 153 TAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVKIIRPSETAGRYITYRLVV 211
[40][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
Length = 213
Score = 83.6 bits (205), Expect = 1e-14
Identities = 45/117 (38%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361
+ ++RLSR IL+V+ +T +A+ ++ Q +E+ +++VVN T H + LT
Sbjct: 97 MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTP 156
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++YK++E QLP + +DP+A YYGL++GQV+KI E VTYR V
Sbjct: 157 EEKRLLLERYKVKENQLPRIQSSDPVARYYGLKKGQVMKIIRPSETAGRYVTYRLCV 213
[41][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
Length = 221
Score = 83.6 bits (205), Expect = 1e-14
Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQ--HAVEIIKL 406
V F N+ K+++ + +K R I+I KM+P A+K L+ Q + +E
Sbjct: 85 VYFCADKNVSKASMKTFIGSM-DKMGARRGIIIWSEKMSPAAKKTLQEMQSEYHLEDFPE 143
Query: 405 NDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
+D++VN TKH V+ K L+K+Y+++E QLP ++ TDP+A YYGL+RGQV+K
Sbjct: 144 SDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRIMITDPVAKYYGLKRGQVMK 203
Query: 243 ISHSGEVFNSLVTYR 199
I + E +TYR
Sbjct: 204 IERASETAGRYITYR 218
[42][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
RepID=C6K8L9_CAEBE
Length = 211
Score = 83.2 bits (204), Expect = 1e-14
Identities = 50/138 (36%), Positives = 81/138 (58%), Gaps = 8/138 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKL 406
V F I + AI Q+ ++ +SR I++V++ MTP A++ + + ++ +E
Sbjct: 75 VFFPDDTKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGDMAPKYMLEHFLE 133
Query: 405 NDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
+++VN T+H VV+T+ K ELL +YK+++ QLP + + DP+A Y+GL RGQVVK
Sbjct: 134 AELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVVK 193
Query: 243 ISHSGEVFNSLVTYRCVV 190
I E +TYR VV
Sbjct: 194 IIRPSETAGRYITYRLVV 211
[43][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
Length = 205
Score = 83.2 bits (204), Expect = 1e-14
Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 10/141 (7%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415
+++ D I+K+ + + + ++++ + R IL+ ++ +TP+AR ++ +H +E
Sbjct: 65 KIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124
Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
+++VN TKH + LT+ K+ LL++YKI+E +LP + DP+ Y+GL +GQ
Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQ 184
Query: 252 VVKISHSGEVFNSLVTYRCVV 190
VVKI E VTYR VV
Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205
[44][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
thaliana RepID=O81098_ARATH
Length = 205
Score = 82.8 bits (203), Expect = 2e-14
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
+ E + R IL+V+ +TP+AR LE Q A ++ + + V+ P +H VLT
Sbjct: 89 MKSENVFRAILVVQQNLTPFARTCISEISSKFHLEVFQEAEMLVNIKEHVLVP-EHQVLT 147
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++Y ++E QLP + TDP+A Y+GL+RGQVVKI E VTYR VV
Sbjct: 148 TEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKIIRPSETAGRYVTYRYVV 205
[45][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
Length = 205
Score = 82.0 bits (201), Expect = 3e-14
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415
+V+ D +K+ + I + + + + R IL+ ++ +T +AR + +H +E
Sbjct: 65 RVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHIIEN 124
Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
++++VN TKH V LT KQ LL +Y+++E QLP + DP+A Y+GL RGQ
Sbjct: 125 FMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQSADPVARYFGLSRGQ 184
Query: 252 VVKISHSGEVFNSLVTYRCVV 190
VVKI E VTYR VV
Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205
[46][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
Length = 207
Score = 82.0 bits (201), Expect = 3e-14
Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 8/119 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E +SR +++V+ MTP A++ L + ++ +E ++++N T+H V++
Sbjct: 89 QRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILEQFVEAELMINITEHELVPEHVLM 148
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
T KQELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR VV
Sbjct: 149 TPDEKQELLLRYKLKEHQLPRIQSGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLVV 207
[47][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
intestinalis RepID=UPI000180C3C9
Length = 210
Score = 81.6 bits (200), Expect = 4e-14
Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E + R I++V+ MTP A++ L + ++ +E ++++N T+H VVL
Sbjct: 92 QRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPKYILEQFLEQELLINITEHELVPEHVVL 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T K ELL +YK+++ QLP + DP+A Y+GL+RGQVVKI E VTYR V
Sbjct: 152 TPEEKSELLTRYKLKDHQLPRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYVTYRLV 209
[48][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S3Q9_TRIAD
Length = 210
Score = 81.6 bits (200), Expect = 4e-14
Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVL 367
Q + +E ++R I+I++S MTP A++ L + ++ +E +++++N T KH+V+
Sbjct: 92 QRMQRENINRAIIIIQSGMTPTAKQSLIDMAPKYTLESFMESELMINITEHHLVPKHIVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
+ K ELL +YK++E QLP + DP+A YYGL+RGQ V+I E +TYR V
Sbjct: 152 SPEEKAELLARYKLKEHQLPRIQVGDPVARYYGLKRGQFVRIIRPSETAGRYITYRLV 209
[49][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RKM1_RICCO
Length = 225
Score = 81.3 bits (199), Expect = 5e-14
Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---ELENCQHAVEIIKLNDVVVNPTKHV------VLT 364
+ E + R IL+V+ +TP+AR E+ + H +E+ + ++++VN +HV VLT
Sbjct: 109 MKSENVFRAILVVQQSLTPFARTCIAEIASKFH-LEVFQESELLVNIKEHVLVPEHQVLT 167
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++Y ++E QLP + +DP+A YYGL+RGQVVKI E VTYR VV
Sbjct: 168 NEEKKTLLERYTVKETQLPRIQISDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 225
[50][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
Length = 206
Score = 81.3 bits (199), Expect = 5e-14
Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
+ E + R IL+V+ +TP+AR LE Q A ++ + + V+ P +H VL+
Sbjct: 90 MKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVP-EHQVLS 148
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++Y ++E QLP + TDP+A YYGL+RGQVVKI E VTYR V+
Sbjct: 149 NEEKKTLLERYTVKETQLPRIQITDPIARYYGLKRGQVVKIIRPSETAGRYVTYRYVI 206
[51][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FGM1_MAIZE
Length = 206
Score = 81.3 bits (199), Expect = 5e-14
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 11/134 (8%)
Frame = -1
Query: 558 NIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEII 412
N K + I N + + E + IL+V+ ++ +AR LE Q A ++
Sbjct: 74 NEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQKYHLEVFQEAELLV 133
Query: 411 KLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
+ D V+ P +HV+LT K+ LL++Y ++E QLP + TDP+A YYG++RGQVVKI+ +
Sbjct: 134 NIKDHVLVP-EHVLLTPEDKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKITRA 192
Query: 231 GEVFNSLVTYRCVV 190
E +TYR VV
Sbjct: 193 SETAGRYITYRYVV 206
[52][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
strain H RepID=B3L6X3_PLAKH
Length = 205
Score = 81.3 bits (199), Expect = 5e-14
Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 10/141 (7%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415
+++ D +K+ + + + ++++ + R IL+ ++ +TP+AR ++ +H +E
Sbjct: 65 KIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124
Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
+++VN TKH + LT+ K+ LL++YKI+E +LP + DP+ Y+GL +GQ
Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLAKGQ 184
Query: 252 VVKISHSGEVFNSLVTYRCVV 190
VVKI E VTYR VV
Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205
[53][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
Length = 204
Score = 80.9 bits (198), Expect = 7e-14
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 10/116 (8%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENCQ----------HAVEIIKLNDVVVNPTKHVVLTAA 358
E+++R I++V+ +TP+AR+ L CQ A ++ + D V+ P +H++L+
Sbjct: 90 EQVNRAIIVVQQSLTPFARQSLLECQAQKFYIEQFQEAELLVNITDHVLVP-EHILLSDE 148
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL +YK++E QLP + DP+A Y+G+ RGQVV+I E VTYR V
Sbjct: 149 QKRVLLDRYKVKETQLPRIQMHDPVARYFGMRRGQVVRIIRPSETAGRYVTYRLCV 204
[54][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PEL2_VITVI
Length = 206
Score = 80.9 bits (198), Expect = 7e-14
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
+ E + R IL+V+ +TP+AR LE Q A ++ + + V+ P +H VLT
Sbjct: 90 MKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQEAELLVNIKEHVLVP-EHQVLT 148
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+ K+ LL++Y ++E QLP + +DP+A Y+GL+RGQVVKI E +TYR VV
Sbjct: 149 SEEKKTLLERYTVKETQLPRIQVSDPIARYFGLKRGQVVKIIRPSETAGRYITYRYVV 206
[55][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8ID59_PLAF7
Length = 205
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Frame = -1
Query: 582 QVVFTGTDNIRKSNLTAIHN--QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEI 415
+++ D ++K+ + + + + ++ + R IL+ ++ +TP+AR ++ +H +E
Sbjct: 65 RIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHIIEN 124
Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
+++VN TKH + LT+ K+ LL++YKI E +LP + DP+ Y+GL +GQ
Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQDVDPVCRYFGLSKGQ 184
Query: 252 VVKISHSGEVFNSLVTYRCVV 190
VVKI E VTYR VV
Sbjct: 185 VVKIIRPSETAGRYVTYRLVV 205
[56][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
HM-1:IMSS RepID=C4LW54_ENTHI
Length = 204
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 7/136 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLN 403
+VF K+++ + V E + R I++ K++ ++ +E + E + +
Sbjct: 68 IVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLED 127
Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
+++VN T +H++L+ KQELLKKY+++E QLP +L +DP++ YYG +RG VVKI
Sbjct: 128 ELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187
Query: 240 SHSGEVFNSLVTYRCV 193
E VTYR V
Sbjct: 188 IRKSETAGRYVTYRAV 203
[57][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=1 Tax=Entamoeba dispar SAW760
RepID=B0EA74_ENTDI
Length = 204
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 7/136 (5%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLN 403
+VF K+++ + V E + R I++ K++ ++ +E + E + +
Sbjct: 68 IVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLED 127
Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
+++VN T +H++L+ KQELLKKY+++E QLP +L +DP++ YYG +RG VVKI
Sbjct: 128 ELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRLLTSDPISKYYGFQRGDVVKI 187
Query: 240 SHSGEVFNSLVTYRCV 193
E VTYR V
Sbjct: 188 IRKSETAGRYVTYRAV 203
[58][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
vitripennis RepID=UPI00015B5456
Length = 210
Score = 80.5 bits (197), Expect = 9e-14
Identities = 44/118 (37%), Positives = 74/118 (62%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E++ R I++V+S MTP A++ L + ++ +E +++++N T+H +VL
Sbjct: 92 QRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T K+ELL +YK++E QL + DP+A Y+GL+RGQVVKI E ++YR V
Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQANDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[59][TOP]
>UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA
Length = 202
Score = 80.5 bits (197), Expect = 9e-14
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 12/140 (8%)
Frame = -1
Query: 576 VFTGTDNIRKSNLTAIHNQIVNKER--LSRLILI-VESKMTPYARKELENCQHA---VEI 415
+ T D I + + I I N + ++R I+I E +TP A + L+N + + +E
Sbjct: 62 ILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGKTIEF 121
Query: 414 IKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
++V++N T KH VLT KQE+LK+Y + E QLP +LRTDP++ Y G++ GQ
Sbjct: 122 FSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRILRTDPVSRYLGVKPGQ 181
Query: 252 VVKISHSGEVFNSLVTYRCV 193
++KI+ + + VTYR V
Sbjct: 182 LLKITRNSDTAGHYVTYRLV 201
[60][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186E78B
Length = 210
Score = 80.1 bits (196), Expect = 1e-13
Identities = 44/118 (37%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+
Sbjct: 92 QRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPKYILEQFLESELLINITEHELVPEHVVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T KQELL++YK++E QL + DP+A Y+GL+RGQVVKI E ++YR V
Sbjct: 152 TPEEKQELLQRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIVRPSETAGRYISYRLV 209
[61][TOP]
>UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi
RepID=Q4XTK3_PLACH
Length = 126
Score = 80.1 bits (196), Expect = 1e-13
Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 8/117 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
++++ + R IL+ ++ +TP+A+ ++ +H +E +++VN TKH + LT+
Sbjct: 10 MDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTS 69
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++YKI+E +LP + DP+ Y+GL +GQVVKI E VTYR VV
Sbjct: 70 DEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIRPSETAGRYVTYRLVV 126
[62][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
Length = 210
Score = 80.1 bits (196), Expect = 1e-13
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+TA
Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V
Sbjct: 154 EDKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[63][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
Length = 210
Score = 80.1 bits (196), Expect = 1e-13
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+TA
Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V
Sbjct: 154 EDKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[64][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
Length = 210
Score = 79.7 bits (195), Expect = 2e-13
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+TA
Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTA 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V
Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[65][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7FSY0_PHATR
Length = 228
Score = 79.3 bits (194), Expect = 2e-13
Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 8/119 (6%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPTKHV----- 373
++ + E +S I+I+ +TP+A++ ++ + +E K ++++V+ TKH
Sbjct: 107 VYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHFKESELLVDITKHQLVPVH 166
Query: 372 -VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
VLT K ELLK+Y++++ QLP + DP+A YYG+ RGQVVKI E VTYR
Sbjct: 167 QVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYR 225
[66][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
RepID=UPI000056951D
Length = 211
Score = 79.0 bits (193), Expect = 3e-13
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R +++V++ MTP A++ L + ++ +E ++++N T+H +V+
Sbjct: 93 QRMQEENITRAVIVVQTGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 152
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK++E QLP + +DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 153 TKEEVTELLARYKLKETQLPRIQCSDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 210
[67][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BIS3_OSMMO
Length = 210
Score = 79.0 bits (193), Expect = 3e-13
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H +V+
Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 TKEELSELLTRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[68][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
Length = 1124
Score = 79.0 bits (193), Expect = 3e-13
Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVNPT------KHVVLT 364
+ +E + R I++V++ +TP+A++ L CQ +E + +++VN +H++L+
Sbjct: 1007 MKEENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIVDHVLVPEHILLS 1066
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++YK+++ QLP + DP+A YYG+ RGQVV+I E VTYR V
Sbjct: 1067 DEQKRTLLERYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 1124
[69][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
pseudonana CCMP1335 RepID=B8C1Q1_THAPS
Length = 226
Score = 79.0 bits (193), Expect = 3e-13
Identities = 43/112 (38%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLTAAG 355
E +S IL++ +TP+A++ LE+ + A ++ + + + P +H+VL+
Sbjct: 113 ENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVP-EHLVLSQNE 171
Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
KQELLK+Y++ E QLP + DP+A YYG++RGQVVKI E VTYR
Sbjct: 172 KQELLKRYRLRETQLPRIQPNDPVARYYGMKRGQVVKIIRPSETAGRYVTYR 223
[70][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
rerio RepID=Q6DEG5_DANRE
Length = 210
Score = 78.6 bits (192), Expect = 3e-13
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H +V+
Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[71][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
Length = 210
Score = 78.6 bits (192), Expect = 3e-13
Identities = 43/118 (36%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H +V+
Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 TKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[72][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
Length = 210
Score = 78.6 bits (192), Expect = 3e-13
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H VV+
Sbjct: 92 QRMQEENITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK+ E QLP + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[73][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
Length = 210
Score = 78.6 bits (192), Expect = 3e-13
Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+TA
Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHDLVPEHVVMTA 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
KQELL +YK++E L + DP+A Y+GL+RGQVVKI + E ++YR V
Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRASETAGRYISYRLV 209
[74][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
Tax=Murinae RepID=RPAB1_MOUSE
Length = 210
Score = 78.6 bits (192), Expect = 3e-13
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H
Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEH 148
Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR
Sbjct: 149 VVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208
Query: 195 V 193
V
Sbjct: 209 V 209
[75][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide E, 25kDa n=1 Tax=Pan troglodytes
RepID=UPI0000E24E5A
Length = 230
Score = 78.2 bits (191), Expect = 4e-13
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H
Sbjct: 109 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 168
Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR
Sbjct: 169 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 228
Query: 195 V 193
V
Sbjct: 229 V 229
[76][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
RepID=UPI00003C0CAC
Length = 210
Score = 78.2 bits (191), Expect = 4e-13
Identities = 43/118 (36%), Positives = 73/118 (61%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E++ R I++V+ MTP A++ L + ++ +E +++++N T+H +VL
Sbjct: 92 QRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T K+ELL +YK++E QL + DP+A Y+GL+RGQVVKI E ++YR V
Sbjct: 152 TPDEKEELLTRYKLKENQLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[77][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MXV4_9CHLO
Length = 206
Score = 78.2 bits (191), Expect = 4e-13
Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 9/115 (7%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVNPTKHVV------LTAAG 355
E + R I++V++ +TP+A++ L C +E + +++VN T+HV+ L+ A
Sbjct: 92 ESVFRAIIVVQASLTPFAKQSLLECASQSFYIEQFQEMELLVNITEHVLVPEHVLLSDAE 151
Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL +YK+++ QLP + DP+A YYG+ RGQVV+I E VTYR V
Sbjct: 152 KRTLLARYKVKDTQLPRIQLHDPVARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 206
[78][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
Tax=Theileria annulata RepID=Q4U8E3_THEAN
Length = 205
Score = 78.2 bits (191), Expect = 4e-13
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Frame = -1
Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346
+ R IL+ ++ +TP+A+ + ++ +E +++VN TKH + LT KQ
Sbjct: 94 IHRAILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQN 153
Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
LL+KYK++E Q+P + DP+A Y+GL +GQVVKI E VT+R VV
Sbjct: 154 LLQKYKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLVV 205
[79][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N141_THEPA
Length = 205
Score = 78.2 bits (191), Expect = 4e-13
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Frame = -1
Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346
+ R IL+ ++ +TP+A+ + ++ +E +++VN TKH + LT KQ
Sbjct: 94 IHRAILVTQNVLTPFAKDAIMEAYPKNIIENFMETELLVNITKHELVPKHIPLTMEEKQN 153
Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
LL+KYK++E Q+P + DP+A Y+GL +GQVVKI E VT+R VV
Sbjct: 154 LLQKYKVKESQIPRIQSADPVARYFGLSKGQVVKIIRPSETAGRYVTFRLVV 205
[80][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3ZQF0_BRAFL
Length = 210
Score = 78.2 bits (191), Expect = 4e-13
Identities = 43/116 (37%), Positives = 72/116 (62%), Gaps = 8/116 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E +SR I++V+ MTP A++ L + ++ +E +++++N T+H VV+
Sbjct: 92 QRMQEENISRAIIVVQMGMTPSAKQALVDMAPKYILEQFLESELLINITEHQLVPEHVVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
T K ELL +Y+++E QLP + DP+A Y+GL+RGQVVKI E ++YR
Sbjct: 152 TPEEKAELLARYRLKEHQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYR 207
[81][TOP]
>UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium
muris RN66 RepID=B6AE06_9CRYT
Length = 205
Score = 78.2 bits (191), Expect = 4e-13
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 10/134 (7%)
Frame = -1
Query: 561 DNIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVV 394
D +K+ + I + + +++ + R ILI ++ +T +A+ + + +H +E N+++
Sbjct: 72 DESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELL 131
Query: 393 VNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
VN T KHV+L+ K +LL++YK++E QLP + DP+A Y+GL + QVVKI
Sbjct: 132 VNITRHELVPKHVLLSDEEKSQLLERYKVKETQLPRIQHADPVARYFGLAKSQVVKIIRP 191
Query: 231 GEVFNSLVTYRCVV 190
E VTYR VV
Sbjct: 192 SETAGRYVTYRLVV 205
[82][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
Length = 210
Score = 78.2 bits (191), Expect = 4e-13
Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+T
Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTV 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V
Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[83][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
Length = 210
Score = 78.2 bits (191), Expect = 4e-13
Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+T
Sbjct: 94 MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTV 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
KQELL +YK++E L + DP+A Y+GL+RGQVVKI S E ++YR V
Sbjct: 154 EEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRSSETAGRYISYRLV 209
[84][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
RepID=A6N9W6_ORNPR
Length = 210
Score = 78.2 bits (191), Expect = 4e-13
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 8/119 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R I++V+ MTP A++ L + ++ +E +++++N T+H VVL
Sbjct: 92 QRMQEENITRAIIVVQQGMTPSAKQALTDMAPKYILEYFLESELLINITEHELVPEHVVL 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
T K ELL +YK++E L + DP+A Y+GL+RGQVVKI E ++YR VV
Sbjct: 152 TPEEKAELLARYKLKENHLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLVV 210
[85][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Pongo abelii RepID=RPAB1_PONAB
Length = 210
Score = 78.2 bits (191), Expect = 4e-13
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H
Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148
Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208
Query: 195 V 193
V
Sbjct: 209 V 209
[86][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Homo sapiens RepID=RPAB1_HUMAN
Length = 210
Score = 78.2 bits (191), Expect = 4e-13
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H
Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148
Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208
Query: 195 V 193
V
Sbjct: 209 V 209
[87][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Bos taurus RepID=RPAB1_BOVIN
Length = 210
Score = 78.2 bits (191), Expect = 4e-13
Identities = 42/121 (34%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H
Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148
Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
VV+T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRL 208
Query: 195 V 193
V
Sbjct: 209 V 209
[88][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000587A08
Length = 210
Score = 77.8 bits (190), Expect = 6e-13
Identities = 44/118 (37%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R I+ V+ KMTP A+ L + ++ +E ++++N T+H VV+
Sbjct: 92 QRMQEENITRAIITVQEKMTPSAKTSLGDMAPKYILEQFLEAELLINITEHDFVPEHVVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T K ELL +YK+++ QLP + DP+A Y+GL+RGQVVKI E ++YR V
Sbjct: 152 TGEEKAELLARYKLKDHQLPRIQVGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[89][TOP]
>UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4
RepID=UPI00004E3EE0
Length = 181
Score = 77.8 bits (190), Expect = 6e-13
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Frame = -1
Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQH----AVEIIKLNDVVVNPT------KHVV 370
I+ + +R I++V+ +TP+A++ L +E +++VN T KH++
Sbjct: 62 IMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHIL 121
Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
LT K ELL +YK++E QLP + DP+A YYGL RG VVKI E +TYR V
Sbjct: 122 LTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 181
[90][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
RepID=Q28HF5_XENTR
Length = 210
Score = 77.8 bits (190), Expect = 6e-13
Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H VV+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK+ E QLP + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 TKDEVTELLARYKLRESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[91][TOP]
>UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1
Tax=Dictyostelium discoideum RepID=RPAB1_DICDI
Length = 197
Score = 77.8 bits (190), Expect = 6e-13
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 10/120 (8%)
Frame = -1
Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQH----AVEIIKLNDVVVNPT------KHVV 370
I+ + +R I++V+ +TP+A++ L +E +++VN T KH++
Sbjct: 78 IMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHHQLVPKHIL 137
Query: 369 LTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
LT K ELL +YK++E QLP + DP+A YYGL RG VVKI E +TYR V
Sbjct: 138 LTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 197
[92][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
Tax=Neognathae RepID=B5FX59_TAEGU
Length = 210
Score = 77.4 bits (189), Expect = 8e-13
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H VV+
Sbjct: 92 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR V
Sbjct: 152 TKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 209
[93][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
Tax=Euteleostei RepID=B5X957_SALSA
Length = 210
Score = 77.4 bits (189), Expect = 8e-13
Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R ++V+ MTP A++ L + ++ +E ++++N T+H +V+
Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK++E QLP + + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQQGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[94][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
Length = 206
Score = 77.4 bits (189), Expect = 8e-13
Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 8/111 (7%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPTKHV------VLTAAGK 352
E+++R I++ SK TP+A+ LE+ + + +E ++++VN T+HV +L+ K
Sbjct: 89 EKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEHFLESELLVNITEHVLVPEHRILSPDEK 148
Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+ LL +YKI+E QLP + +D +A Y GL+RGQVV+I E VTYR
Sbjct: 149 RTLLDRYKIKETQLPRIQASDAVARYLGLQRGQVVRIVRPSETAGRYVTYR 199
[95][TOP]
>UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium
RepID=Q5CNJ4_CRYHO
Length = 205
Score = 77.4 bits (189), Expect = 8e-13
Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 10/134 (7%)
Frame = -1
Query: 561 DNIRKSNLTAIHNQI--VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVV 394
D +K+ + I + + +++ + R ILI ++ +T +A+ + + +H +E N+++
Sbjct: 72 DESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFLENELL 131
Query: 393 VNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
VN TKH ++L+ K +LL +YKI+E QLP + DP+A Y+GL +GQVVKI
Sbjct: 132 VNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQYADPVARYFGLAKGQVVKIIRP 191
Query: 231 GEVFNSLVTYRCVV 190
E VTYR VV
Sbjct: 192 SETAGRYVTYRLVV 205
[96][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RWP8_OSTLU
Length = 205
Score = 77.0 bits (188), Expect = 1e-12
Identities = 41/115 (35%), Positives = 68/115 (59%), Gaps = 9/115 (7%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENCQHA---VEIIKLNDVVVN------PTKHVVLTAAG 355
E + R I++V++ +TP+A++ L CQ +E + +++VN +H++L+
Sbjct: 91 ENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQFQETELLVNIIDHVLVPEHILLSDDQ 150
Query: 354 KQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL +YK+++ QLP + DP+A YYG+ RGQVV+I E VTYR V
Sbjct: 151 KRTLLDRYKVKDTQLPRIQMHDPIARYYGMRRGQVVRIIRPSETAGRYVTYRLCV 205
[97][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
Length = 210
Score = 77.0 bits (188), Expect = 1e-12
Identities = 43/118 (36%), Positives = 74/118 (62%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R I++V+ MTP A++ L + ++ +E +++++N T+H +VL
Sbjct: 92 QRMQEETITRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHIVL 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T KQELL +YK++E QL + DP++ Y+GL+RGQVVKI + E ++YR V
Sbjct: 152 TPDEKQELLCRYKLKENQLMRIQVGDPVSRYFGLKRGQVVKIVRNSETAGRYISYRLV 209
[98][TOP]
>UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans
RepID=Q59PF3_CANAL
Length = 179
Score = 77.0 bits (188), Expect = 1e-12
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
+ ++ S I I ++ MTP A K + A +EI + ND++VN T KH+ L
Sbjct: 64 ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNRE 123
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI E +YR
Sbjct: 124 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 176
[99][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
albicans RepID=C4YG42_CANAL
Length = 214
Score = 77.0 bits (188), Expect = 1e-12
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
+ ++ S I I ++ MTP A K + A +EI + ND++VN T KH+ L
Sbjct: 99 ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNRE 158
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI E +YR
Sbjct: 159 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211
[100][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
Length = 210
Score = 76.6 bits (187), Expect = 1e-12
Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R I++V+ MTP A++ L + ++ +E ++++N T+H +V+
Sbjct: 92 QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
+ ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 SKEEVVELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[101][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Esox lucius RepID=C1BZT4_ESOLU
Length = 210
Score = 76.6 bits (187), Expect = 1e-12
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R ++V+ MTP A++ L + ++ +E ++++N T+H +V+
Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[102][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Salmo salar RepID=B5X8S7_SALSA
Length = 210
Score = 76.6 bits (187), Expect = 1e-12
Identities = 42/118 (35%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + +E ++R ++V+ MTP A++ L + ++ +E ++++N T+H +V+
Sbjct: 92 QRMQEENITRACIVVQMGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHIVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T ELL +YK++E QLP + DP+A Y+GL+RGQVVKI E +TYR V
Sbjct: 152 TKEELSELLLRYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLV 209
[103][TOP]
>UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B4DJ89_HUMAN
Length = 117
Score = 76.6 bits (187), Expect = 1e-12
Identities = 41/116 (35%), Positives = 69/116 (59%), Gaps = 8/116 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H VV+T
Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR V
Sbjct: 61 EEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 116
[104][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
Length = 214
Score = 76.6 bits (187), Expect = 1e-12
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
+ ++ S I I ++ MTP A K + A +EI + ND++VN T KH+ L
Sbjct: 99 ITEKNFSTGIFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKLNHE 158
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ELL +Y+++E QLP + R DP+A Y GL+RG++VKI E +YR
Sbjct: 159 EKKELLTRYRLKESQLPRIQREDPVARYLGLKRGEIVKIIRRSETSGRYASYR 211
[105][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D56A05
Length = 210
Score = 75.9 bits (185), Expect = 2e-12
Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 8/118 (6%)
Frame = -1
Query: 522 QIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVL 367
Q + E + R I++V+ MTP A++ L + ++ +E +++++N T+H VV+
Sbjct: 92 QRMQDENIHRAIIVVQQGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVM 151
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
T KQELL +YK++E L + DP+A Y+GL+RGQVVKI E ++YR V
Sbjct: 152 TPEEKQELLTRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[106][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
RepID=B0X7A5_CULQU
Length = 210
Score = 75.9 bits (185), Expect = 2e-12
Identities = 42/116 (36%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
+ +E + R I++V++ MTP A++ L + ++ +E +++++N T+H VV+T
Sbjct: 94 MQEENIHRAIVVVQAGMTPSAKQSLVDMAPKYILEQFLESELLINITEHELVPEHVVMTP 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
KQELL +YK++E L + DP+A Y+GL+RGQVVKI E ++YR V
Sbjct: 154 EEKQELLARYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYISYRLV 209
[107][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Babesia bovis RepID=A7APR4_BABBO
Length = 205
Score = 75.5 bits (184), Expect = 3e-12
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 8/111 (7%)
Frame = -1
Query: 501 LSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTAAGKQE 346
+ R IL+ ++ +TP+A+ + ++ +E +++VN TKH + LTA KQ
Sbjct: 94 IHRAILVTQNVLTPFAKDAILEAAPRNIIENFLETELLVNITKHELVPKHIPLTADEKQT 153
Query: 345 LLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
LL++YK++E Q+P + DP+A Y+GL +GQVVKI E VT+R V
Sbjct: 154 LLQRYKVKESQIPRIQAADPVARYFGLTKGQVVKIIRPSETAGRYVTFRLV 204
[108][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JZQ6_SCHJY
Length = 211
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
ILI + MTP A K + Q +E + +D++VN T KHV+LT K+ELL +
Sbjct: 104 ILIYANNMTPSATKIISTVTGQFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDR 163
Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
YK+ E QLP + DP+A Y GL+RGQVVKI E +YR
Sbjct: 164 YKLRETQLPRIQMADPVARYLGLKRGQVVKIVRRSETSGRYNSYR 208
[109][TOP]
>UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG
Length = 214
Score = 75.1 bits (183), Expect = 4e-12
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAA 358
+ ++ S I I ++ +TP A K + A+ E + +D+VVN T KH+ L+
Sbjct: 99 IQEKNFSTGIFIYQNNITPSANKMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLSDG 158
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K +LL++YK++E QLP + R DP+A Y GL+RGQVVKI E +YR
Sbjct: 159 EKSQLLQRYKLKESQLPRIQREDPVARYLGLKRGQVVKIIRRSETSGRYASYR 211
[110][TOP]
>UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Yarrowia lipolytica RepID=RPAB1_YARLI
Length = 212
Score = 75.1 bits (183), Expect = 4e-12
Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPTKHVV------LTAA 358
+++ + + IL+ E+ MTP A + + + A ++ + D++VN TKHV+ L+ A
Sbjct: 97 ISENKFATGILVYENNMTPSANRLIPSVAPATIDTFQETDLLVNITKHVLVPTHIKLSGA 156
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ LL++Y+++E QLP + R DP+A Y GL RGQ+VKI E +YR
Sbjct: 157 EKKFLLERYRLKESQLPRIQREDPVARYLGLRRGQIVKIIRRSETSGRYASYR 209
[111][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XUF8_ORYSJ
Length = 205
Score = 74.7 bits (182), Expect = 5e-12
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
+ +E + IL+V+ ++ +AR LE Q A ++ + D + P +H +LT
Sbjct: 89 MKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVP-EHELLT 147
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++Y ++E QLP + TDP+A YYG++RGQVVKI + E VTYR VV
Sbjct: 148 PEQKKTLLERYTVKETQLPRIQITDPIARYYGMKRGQVVKIIRASETAGRYVTYRYVV 205
[112][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
theta RepID=Q98RN7_GUITH
Length = 214
Score = 74.3 bits (181), Expect = 6e-12
Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKL---NDVVVNPT------KHVVLT 364
+ E SR+++I+ K+TP+A++ + + ++I+ N+++VN T KH +L+
Sbjct: 97 IKNEGFSRVLMILNGKLTPHAKQAVSSINSNNDLIEYFSENELIVNITHHMLVPKHEILS 156
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+ LL++Y I+ LP +L+ DP+A Y GL+R ++VKI+ E +TYR +
Sbjct: 157 KNESKSLLERYSIKFDHLPKILKNDPVAKYLGLQRSEIVKITRVSETSGKFITYRICI 214
[113][TOP]
>UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4
Length = 287
Score = 74.3 bits (181), Expect = 6e-12
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
++++ S I I ++ +TP A K + A +E+ + +D+VVN T KH+ L+
Sbjct: 172 ISEKNFSTGIFIYQTSITPSANKLIPTVSPATIEVFQESDLVVNITHHELVPKHIRLSKP 231
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ELL +Y+++E QLP + R DP+A Y GL+RG VVKI E +YR
Sbjct: 232 EKKELLDRYRLKESQLPRIQREDPVARYLGLKRGDVVKIIRRSETSGRYASYR 284
[114][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LR68_PICSI
Length = 194
Score = 73.9 bits (180), Expect = 8e-12
Identities = 43/109 (39%), Positives = 65/109 (59%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVVVNPTKHVVLTAAGKQELLK 337
+ E + R IL+V+ + + + LE Q A ++ + + V+ P + + LT K+ LL+
Sbjct: 89 MKSEGVFRAILVVQQEFS--GKFHLEVFQEAELLVNIKEHVLVPEQQI-LTPEEKKTLLE 145
Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+Y ++E QLP M +DP+A YYGL+RGQVVKI E VTYR VV
Sbjct: 146 RYTLKETQLPRMQESDPVARYYGLKRGQVVKIIRPSETAGRYVTYRYVV 194
[115][TOP]
>UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7Z7I7_NECH7
Length = 234
Score = 73.6 bits (179), Expect = 1e-11
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
I++ ++P ARK L + + +E +D++VN T KHV+L+ K LLK+
Sbjct: 127 IMVTHVPLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKR 186
Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
Y+++E QLP +L+ DP+A Y GL+RGQVVKI + E +YR V
Sbjct: 187 YRLKETQLPRILQRDPVARYLGLKRGQVVKIIRNSETAGRYASYRLCV 234
[116][TOP]
>UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL
Length = 179
Score = 73.6 bits (179), Expect = 1e-11
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
I I ++ +TP A K + Q A +E + D++VN T KH+ L K+ELL++Y
Sbjct: 73 IFIYQNSITPSANKLIPTVQPASIETFQETDLIVNITHHELVPKHIKLNREEKKELLERY 132
Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 133 RLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176
[117][TOP]
>UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia
guilliermondii RepID=A5DHL4_PICGU
Length = 179
Score = 73.2 bits (178), Expect = 1e-11
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
++++ S I I ++ +TP A K + A +E + +D++VN T KH+ L+
Sbjct: 64 ISEKNFSTGIFIYQNSITPSANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIKLSIG 123
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ELL +Y+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 124 EKKELLARYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 176
[118][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
Length = 213
Score = 73.2 bits (178), Expect = 1e-11
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
++++ S I I ++ +TP A K + A +E + D+VVN T KH+ L+
Sbjct: 98 ISEKNFSTGIFIYQNSITPSANKLIPTVSPASIETFQEGDLVVNITHHELVPKHIKLSRD 157
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ELL +Y+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 158 EKKELLDRYRLKESQLPRVQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 210
[119][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
Length = 214
Score = 73.2 bits (178), Expect = 1e-11
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
++++ S I I +S +TP A K + A +E + D+VVN T KH+ L
Sbjct: 99 ISEKNFSTGIFIYQSSITPSANKLIPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARD 158
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ELL++Y+++E QLP + R DP+ Y GL+RG+VVKI E +YR
Sbjct: 159 EKKELLERYRLKESQLPRIQREDPVGRYLGLKRGEVVKIIRRSETSGRYASYR 211
[120][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
Length = 215
Score = 72.8 bits (177), Expect = 2e-11
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
I I +S +TP A K L AV E +VVN T KH+ L+ A K+ELLK+Y
Sbjct: 109 IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRY 168
Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+++E QLP + R DP+A Y GL+RG+V+KI E +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
[121][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D9Y7_LACBS
Length = 208
Score = 72.4 bits (176), Expect = 2e-11
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Frame = -1
Query: 519 IVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHV------VLT 364
I+ ++ + R I++ MTP ARK + Q+ +E D++VN H VL+
Sbjct: 91 ILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYRLEEFSEADLLVNIVHHTLVPRHDVLS 150
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ LL+KY+++E QLP + DP+A YYGL RGQVVKI+ E +YR
Sbjct: 151 PDEKKTLLEKYRLKETQLPRIQLADPVARYYGLRRGQVVKITRPSETSGRYASYR 205
[122][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
Length = 215
Score = 72.4 bits (176), Expect = 2e-11
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
I I +S +TP A K L AV E +VVN T KH+ L+ A K+ELLK+Y
Sbjct: 109 IFIYQSGITPSANKILPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRY 168
Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+++E QLP + R DP+A Y GL+RG+V+KI E +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVIKIIRKSETSGRYASYR 212
[123][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MBX4_CANTT
Length = 214
Score = 72.0 bits (175), Expect = 3e-11
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAV-EIIKLNDVVVNPT------KHVVLTAA 358
+ ++ S + I ++ +TP A K + +V EI + +D++VN T KH+ L+
Sbjct: 99 ITEKNFSTGLFIYQNSITPSANKLIPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSKD 158
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K ELL++Y+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 159 EKVELLERYRLKESQLPRIQREDPVARYLGLKRGEVVKIIRRSETSGRYASYR 211
[124][TOP]
>UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum
canis CBS 113480 RepID=C5FC74_NANOT
Length = 236
Score = 72.0 bits (175), Expect = 3e-11
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Frame = -1
Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403
GT +IR NQ ++++ I I +S ++P A + L C+H +E
Sbjct: 110 GTKHIRA------FNQFIDQQNYHAGIFITQSPISPSAIRLLTAIPGRFCEHFLE----Q 159
Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
+++VN T KH++L+A K++LL++Y+++E QLP + DP+A Y GL RGQVVKI
Sbjct: 160 ELLVNITHHELVPKHILLSAEEKKKLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKI 219
Query: 240 SHSGEVFNSLVTYRCV 193
E +YR V
Sbjct: 220 IRKSETAGRYASYRWV 235
[125][TOP]
>UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500
RepID=B8M3B9_TALSN
Length = 236
Score = 72.0 bits (175), Expect = 3e-11
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENCQ-HAVEIIKLNDVVVNPT------KHVVL 367
N +V++ I I + ++P A + L + H E + +D++VN T KHV+L
Sbjct: 118 NHLVDEGNYHSGIFITRTAISPSAMRLLSSAVGHICEHFQESDLLVNITHHELVPKHVLL 177
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+A K LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR V+
Sbjct: 178 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 236
[126][TOP]
>UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QBA8_PENMQ
Length = 172
Score = 71.2 bits (173), Expect = 5e-11
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKLNDVVVNPT------KHVVL 367
N +V++ I I + ++P A + L + H E + +D++VN T KHV+L
Sbjct: 54 NHLVDEGNYHSGIFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLL 113
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+A K LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR V+
Sbjct: 114 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 172
[127][TOP]
>UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QBA7_PENMQ
Length = 236
Score = 71.2 bits (173), Expect = 5e-11
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELENC-QHAVEIIKLNDVVVNPT------KHVVL 367
N +V++ I I + ++P A + L + H E + +D++VN T KHV+L
Sbjct: 118 NHLVDEGNYHSGIFITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLL 177
Query: 366 TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+A K LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR V+
Sbjct: 178 SAEEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYRWVI 236
[128][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
Length = 210
Score = 71.2 bits (173), Expect = 5e-11
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
ILI + MTP A K + Q +E + +D++VN T KH++L+ K+ELL +
Sbjct: 103 ILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDR 162
Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
YK+ E QLP + DP+A Y GL+RG+VVKI E +YR
Sbjct: 163 YKLRETQLPRIQLADPVARYLGLKRGEVVKIVRRSETSGRYNSYR 207
[129][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
Length = 210
Score = 70.5 bits (171), Expect = 9e-11
Identities = 41/117 (35%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361
+ +E + R I++V++ +TP AR+ L ++ +E +++ N T+ HVV+T
Sbjct: 94 MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
KQELL +YK+ E L + DP++ Y+GL+ GQVVKI S + ++YR VV
Sbjct: 154 DEKQELLSRYKLRESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKTAGRYISYRIVV 210
[130][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5E0K0_DROPS
Length = 210
Score = 70.1 bits (170), Expect = 1e-10
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361
+ +E + R I++V++ +TP AR+ L ++ +E +++ N T+ HVV+T
Sbjct: 94 MQEESIYRAIIVVQNSITPSARQALVEMAPKYVLEQFLEAELMFNITENENVPEHVVMTP 153
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
KQELL +YK++E L + DP++ Y+GL+ GQVVKI S + ++YR VV
Sbjct: 154 DEKQELLSRYKLKESMLMRIQVNDPVSRYFGLKPGQVVKIIRSSKSAGRYISYRIVV 210
[131][TOP]
>UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides
RepID=C5PAC2_COCP7
Length = 236
Score = 70.1 bits (170), Expect = 1e-10
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N V+++ I I +S ++P A + L C+H +E +++VN T K
Sbjct: 118 NHFVDEQNYHTGIFITQSPISPSAIRLLTGIPGRFCEHFLE----QELLVNITHHELVPK 173
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR
Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233
Query: 198 CV 193
V
Sbjct: 234 WV 235
[132][TOP]
>UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023E584
Length = 253
Score = 69.7 bits (169), Expect = 2e-10
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 8/105 (7%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHA--VEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
I+I ++P AR+ L + + +E +D++VN T KHV+L+ K LLK+
Sbjct: 131 IMITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKR 190
Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
Y+++E QLP +L+ DP+A Y GL+RG VVKI + E +YR
Sbjct: 191 YRLKETQLPRILQKDPVARYLGLKRGHVVKIIRNSETAGRYASYR 235
[133][TOP]
>UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6HAG0_PENCW
Length = 234
Score = 69.7 bits (169), Expect = 2e-10
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N +V++ I I ++ ++P A + L C+H E D++VN T K
Sbjct: 116 NHLVDENNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQE----QDLLVNITRHELVPK 171
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+ K +LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR
Sbjct: 172 HVLLSPEEKAKLLERYRLKESQLPRIQISDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231
Query: 198 CVV 190
V+
Sbjct: 232 WVI 234
[134][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TEH4_VANPO
Length = 215
Score = 69.3 bits (168), Expect = 2e-10
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
I + ++ +TP A K + + A +E ++VN T KH+ L+ K+ELLKKY
Sbjct: 109 IFVYQTNVTPSAMKLVPSIPPATIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKY 168
Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
[135][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
Length = 215
Score = 69.3 bits (168), Expect = 2e-10
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
I I ++ +TP A K L + A +E +VVN T KH+ L+ K+ELLK+Y
Sbjct: 109 IFIYQNGITPSALKLLPSVAPATIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRY 168
Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 169 RLKESQLPRIQRMDPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
[136][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5DLP1_DROPS
Length = 320
Score = 68.9 bits (167), Expect = 3e-10
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPTKH------VVLTAAGK 352
E + R IL+V +TP A++ + + +E +++ +N TKH VVL+ K
Sbjct: 97 EGIHRAILVVRDCLTPPAKQSIMAMAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEK 156
Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
++L + Y+++E Q+ ML +DP+A YYGL+ GQVVKI + E ++YR
Sbjct: 157 KQLFRCYRLKESQMMRMLSSDPVARYYGLKPGQVVKIVRASESAGKYISYR 207
[137][TOP]
>UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus
RepID=Q6MY78_ASPFU
Length = 220
Score = 68.9 bits (167), Expect = 3e-10
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N V++ + I ++ ++P A + L C+H E D++VN T K
Sbjct: 102 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 157
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+ K+ LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR
Sbjct: 158 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 217
Query: 198 CVV 190
V+
Sbjct: 218 WVI 220
[138][TOP]
>UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
VaMs.102 RepID=C9S900_9PEZI
Length = 231
Score = 68.9 bits (167), Expect = 3e-10
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
I++ S +T RK+L + + +E D++VN T KH++L+ K LLK+
Sbjct: 124 IMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKR 183
Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
Y+++E QLP + R DP+A Y GL+RG VVKI + E +YR
Sbjct: 184 YRLKETQLPRIKREDPVARYLGLKRGNVVKIIRNSETAGRYASYR 228
[139][TOP]
>UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb01 RepID=C1GUJ0_PARBA
Length = 236
Score = 68.9 bits (167), Expect = 3e-10
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N ++++ I I ++ ++P A + L + C+H E +++VN T K
Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
H++L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR
Sbjct: 174 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233
Query: 198 CV 193
V
Sbjct: 234 WV 235
[140][TOP]
>UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb18 RepID=C1FYH2_PARBD
Length = 236
Score = 68.9 bits (167), Expect = 3e-10
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N ++++ I I ++ ++P A + L + C+H E +++VN T K
Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
H++L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR
Sbjct: 174 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233
Query: 198 CV 193
V
Sbjct: 234 WV 235
[141][TOP]
>UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb03 RepID=C0S407_PARBP
Length = 171
Score = 68.9 bits (167), Expect = 3e-10
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N ++++ I I ++ ++P A + L + C+H E +++VN T K
Sbjct: 53 NHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 108
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
H++L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR
Sbjct: 109 HILLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 168
Query: 198 CV 193
V
Sbjct: 169 WV 170
[142][TOP]
>UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2VUN9_PYRTR
Length = 235
Score = 68.9 bits (167), Expect = 3e-10
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 13/143 (9%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENC-------QHAV 421
V F +N+ L +VN S +++ V+ MT A + L + V
Sbjct: 94 VEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKP-MTGMAIRLLRGATSLSDGPKGGV 152
Query: 420 EIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLER 259
E+ D++VN TKH V+L+ KQ+LL++Y++++ QLP + TDP+A Y GL R
Sbjct: 153 EVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRLKQTQLPRIQSTDPVAKYLGLRR 212
Query: 258 GQVVKISHSGEVFNSLVTYRCVV 190
G VVKI E +YR V+
Sbjct: 213 GSVVKIIRKSETAGRYASYRWVI 235
[143][TOP]
>UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus
RepID=B0XMP1_ASPFC
Length = 171
Score = 68.9 bits (167), Expect = 3e-10
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N V++ + I ++ ++P A + L C+H E D++VN T K
Sbjct: 53 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 108
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+ K+ LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR
Sbjct: 109 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 168
Query: 198 CVV 190
V+
Sbjct: 169 WVI 171
[144][TOP]
>UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D205_NEOFI
Length = 234
Score = 68.9 bits (167), Expect = 3e-10
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N V++ + I ++ ++P A + L C+H E D++VN T K
Sbjct: 116 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 171
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+ K+ LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR
Sbjct: 172 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231
Query: 198 CVV 190
V+
Sbjct: 232 WVI 234
[145][TOP]
>UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus
RepID=A1CP51_ASPCL
Length = 234
Score = 68.9 bits (167), Expect = 3e-10
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N V++ + I ++ ++P A + L C+H E D++VN T K
Sbjct: 116 NHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRICEHFQE----QDLLVNITRHELVPK 171
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+ K+ LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR
Sbjct: 172 HVLLSPEEKKNLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRKSETAGRYASYR 231
Query: 198 CVV 190
V+
Sbjct: 232 WVI 234
[146][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
Length = 215
Score = 68.9 bits (167), Expect = 3e-10
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 7/104 (6%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
I + ++ +TP A K + + A +E +VVN T KH+ L++ K+ELLK+Y
Sbjct: 109 IFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRY 168
Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
[147][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
Length = 210
Score = 68.6 bits (166), Expect = 4e-10
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELE--NCQHAVEIIKLNDVVVNPTKH------VVLTAAGK 352
+++ R I++V +T AR + N +E+ + ++V N T+H VL K
Sbjct: 97 DKVHRGIVVVPMAITAPARMAVSELNKMLTIEVFEEAELVTNITEHKLVNKYYVLDDQAK 156
Query: 351 QELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
++LL Y +++ QLP +L TDP+A YYGL+RGQVVKI S TYR V
Sbjct: 157 KKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQVVKIRRSDATSLDYYTYRFAV 210
[148][TOP]
>UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN
Length = 219
Score = 68.6 bits (166), Expect = 4e-10
Identities = 47/137 (34%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Frame = -1
Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403
GT +R N T V++ I I ++ ++P A + L C+H E
Sbjct: 93 GTKQVRAFNHT------VDEHNFHTGIFITQTPISPSAVRLLSGVPGRICEHFQE----Q 142
Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
D++VN T KHV+L+ K+ LL +Y+++E QLP + +DP+A Y GL RGQVVKI
Sbjct: 143 DLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 202
Query: 240 SHSGEVFNSLVTYRCVV 190
E +YR V+
Sbjct: 203 IRKSETAGRYASYRWVI 219
[149][TOP]
>UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces
dermatitidis RepID=C5G7M7_AJEDR
Length = 236
Score = 68.6 bits (166), Expect = 4e-10
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N ++++ I I ++ ++P A + L + C+H E +++VN T K
Sbjct: 118 NHFIDEQNYHTGIFISQTPISPSAIRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR
Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 233
Query: 198 CV 193
V
Sbjct: 234 WV 235
[150][TOP]
>UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
RepID=C0NL28_AJECG
Length = 236
Score = 68.6 bits (166), Expect = 4e-10
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N ++++ I + ++ ++P A + L + C+H E +++VN T K
Sbjct: 118 NHFIDEQNYHTGIFVSQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR
Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYR 233
Query: 198 CV 193
V
Sbjct: 234 WV 235
[151][TOP]
>UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8N6W2_ASPFN
Length = 171
Score = 68.6 bits (166), Expect = 4e-10
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N +V++ + I ++ ++P A + L C+H E D++VN T K
Sbjct: 53 NHVVDENNFHTGVFITQTPISPSAVRLLSGVPGRICEHFQE----QDLLVNITRHELVPK 108
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+ K +LL +Y+++E QLP + +DP+A Y GL RGQVVKI E +YR
Sbjct: 109 HVLLSPEEKAKLLARYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYR 168
Query: 198 CVV 190
V+
Sbjct: 169 WVI 171
[152][TOP]
>UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN
Length = 236
Score = 68.6 bits (166), Expect = 4e-10
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 11/122 (9%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N ++++ I + ++ ++P A + L + C+H E +++VN T K
Sbjct: 118 NHFIDEQNYHTGIFVSQTPISPSAMRVLNSIPGRFCEHFQE----QELLVNITHHELVPK 173
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+A K+ LL++Y+++E QLP + DP+A Y GL RGQVVKI E +YR
Sbjct: 174 HVLLSAEEKKRLLQRYRLKESQLPRIQSGDPVAKYLGLRRGQVVKIIRRSETAGRYASYR 233
Query: 198 CV 193
V
Sbjct: 234 WV 235
[153][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
Length = 210
Score = 68.2 bits (165), Expect = 5e-10
Identities = 38/140 (27%), Positives = 77/140 (55%), Gaps = 11/140 (7%)
Frame = -1
Query: 579 VVFTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKEL-----ENCQHAVEI 415
V F + +++ + + ++++++ + L R I++ + K+ P A+ + E+ + VE
Sbjct: 68 VFFPESPDVKVAAIKSLYDRL-KSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYIVET 126
Query: 414 IKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
++V N T+H +L + KQ+LL++Y + E +LP + DP+ Y+G ++GQ
Sbjct: 127 FAEAELVYNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLPQIQPNDPVCRYFGAQKGQ 186
Query: 252 VVKISHSGEVFNSLVTYRCV 193
V++I S + VTYR V
Sbjct: 187 VLRIVRSSQTAGRYVTYRIV 206
[154][TOP]
>UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2
Tax=Emericella nidulans RepID=C8VQY1_EMENI
Length = 235
Score = 68.2 bits (165), Expect = 5e-10
Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Frame = -1
Query: 567 GTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLN 403
GT +R N T V++ I I ++ ++P A + L C+H E
Sbjct: 109 GTKQVRTFNHT------VDEGNFHTGIFITKTPISPSAVRLLSGIPGRICEHFQE----Q 158
Query: 402 DVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKI 241
D++VN T KHV+L+ K +LL++Y+++E QLP + +DP+A Y GL RGQVVKI
Sbjct: 159 DLLVNITRHELVPKHVLLSPEEKSKLLQRYRLKESQLPRIQVSDPVARYLGLRRGQVVKI 218
Query: 240 SHSGEVFNSLVTYRCVV 190
E +YR V+
Sbjct: 219 IRKSETAGRYASYRWVI 235
[155][TOP]
>UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE
Length = 239
Score = 68.2 bits (165), Expect = 5e-10
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N V+++ I I +S ++P A + L C+H +E +++VN T K
Sbjct: 121 NHFVDEQNYHTGIFITQSPISPSAVRLLTGIPGRFCEHFLE----QELLVNITHHELVPK 176
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
H++L+A K+ LL +Y+++E QLP + DP+A Y GL RGQVVKI E +YR
Sbjct: 177 HLLLSAEEKKRLLHRYRLKESQLPRIQIGDPVAKYLGLRRGQVVKIIRKSETAGRYASYR 236
Query: 198 CV 193
V
Sbjct: 237 WV 238
[156][TOP]
>UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) =
Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS
513.88 RepID=A2QAL5_ASPNC
Length = 235
Score = 67.8 bits (164), Expect = 6e-10
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 11/123 (8%)
Frame = -1
Query: 525 NQIVNKERLSRLILIVESKMTPYARKELEN-----CQHAVEIIKLNDVVVNPT------K 379
N V++ + I ++ ++P A + L + C+H E D++VN T K
Sbjct: 117 NHFVDENNFHTGVFITQTPISPSAVRLLSSMPGRICEHFQE----QDLLVNITRHELVPK 172
Query: 378 HVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
HV+L+ K LL++Y+++E QLP + +DP+A Y GL RGQVVKI E +YR
Sbjct: 173 HVLLSPDEKARLLERYRLKESQLPRIQVSDPVARYLGLRRGQVVKIIRRSETAGRYASYR 232
Query: 198 CVV 190
V+
Sbjct: 233 WVI 235
[157][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Candida glabrata RepID=RPAB1_CANGA
Length = 215
Score = 67.8 bits (164), Expect = 6e-10
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
+ +++ I I ++ +TP A K + + A +E +VVN T KH+ L
Sbjct: 100 IQEKQFQTGIFIYQNNITPSAMKLVPSIPPATIETFHEAALVVNITHHDLVPKHIRLNEE 159
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K ELLK+Y+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 160 EKAELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETAGRYASYR 212
[158][TOP]
>UniRef100_Q24FV0 RNA polymerase Rpb5, C-terminal domain containing protein n=1
Tax=Tetrahymena thermophila SB210 RepID=Q24FV0_TETTH
Length = 275
Score = 67.4 bits (163), Expect = 8e-10
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Frame = -1
Query: 420 EIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLER 259
EI +D+V+N TKH V L A K++L+ KYKI + QLP +L TDP+ Y+GL
Sbjct: 193 EIFFFDDLVINITKHQLVPKHVPLNAIEKKKLMDKYKINDAQLPKILSTDPITKYFGLRT 252
Query: 258 GQVVKISHSGEVFNSLVTYRCV 193
QV KI E +TYR V
Sbjct: 253 KQVFKIERDSETAGKYITYRIV 274
[159][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DNB3_LACTC
Length = 215
Score = 67.4 bits (163), Expect = 8e-10
Identities = 40/113 (35%), Positives = 63/113 (55%), Gaps = 7/113 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAA 358
++++ I + ++ +TP A K L + A +E +VVN T KH+ L+
Sbjct: 100 ISEKNFQTGIFVYQNGVTPSAMKLLPSVAPATIETFHEASLVVNITHHELVPKHIKLSDE 159
Query: 357 GKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ELL++Y+++E QLP + R DP+A Y GL+RG VVKI E +YR
Sbjct: 160 EKKELLRRYRLKESQLPRIQRMDPVALYLGLKRGDVVKIIRKSETSGRYASYR 212
[160][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DR69_ZYGRC
Length = 215
Score = 67.0 bits (162), Expect = 1e-09
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQHA-VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKY 331
I + ++ +TP A K + + A +E +VVN T KH+ + K+ELLK+Y
Sbjct: 109 IFVYQNNVTPSAMKLVPSIPPATIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRY 168
Query: 330 KIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+++E QLP + R DP+A Y GL+RG+VVKI E +YR
Sbjct: 169 RLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYR 212
[161][TOP]
>UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4QW70_MAGGR
Length = 259
Score = 67.0 bits (162), Expect = 1e-09
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Frame = -1
Query: 489 ILIVESKMTPYARKELE---NCQHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLK 337
IL+ + ++ AR+ L + + VE L D++VN T KHV+L+ K+ LL+
Sbjct: 122 ILVTQGALSSGARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLE 181
Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+Y+++E QLP + DP+A Y GL+RG VVKI E +YR
Sbjct: 182 RYRLKETQLPRIQTKDPVARYLGLQRGNVVKIIRHSETAGRYASYR 227
[162][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8NU15_COPC7
Length = 273
Score = 66.6 bits (161), Expect = 1e-09
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Frame = -1
Query: 519 IVNKERLSRLILIVESKMTPYARKELENCQ--HAVEIIKLNDVVVNPT------KHVVLT 364
I+ ++ + R I+I + MT ARK + + +E D++VN T +H VL+
Sbjct: 156 IMEEKAIQRGIIIFPATMTSSARKVISAMASTYRLEEFAEADLLVNITHHTLVPRHEVLS 215
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
K+ LL++Y++++ QLP + DP+A YYGL RGQVVKI E +YR
Sbjct: 216 PEEKKTLLERYRLKDTQLPRIQPMDPVARYYGLRRGQVVKIIRPSETSGRYASYR 270
[163][TOP]
>UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RKX0_PLAYO
Length = 112
Score = 66.2 bits (160), Expect = 2e-09
Identities = 33/99 (33%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------VVLTA 361
++++ + R IL+ ++ +TP+A+ ++ +H +E +++VN TKH + LT+
Sbjct: 10 MDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLTS 69
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK 244
K+ LL++YKI+E +LP + DP+ Y+GL +GQV K
Sbjct: 70 DEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVQK 108
[164][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
RepID=A3AV22_ORYSJ
Length = 217
Score = 65.9 bits (159), Expect = 2e-09
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 21/130 (16%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---------ELENCQHAVEIIKLNDVVVNPTKHVVLT 364
+ +E + IL+V+ ++ +AR LE Q A ++ + D + P +H +LT
Sbjct: 89 MKQESVFNGILVVQQALSAFARSAVQEVSQKFHLEVFQEAELLVNIKDHTLVP-EHELLT 147
Query: 363 AAGKQELLKKYKIEEKQ------------LPHMLRTDPMASYYGLERGQVVKISHSGEVF 220
K+ LL++Y ++E Q LP + TDP+A YYG++RGQVVKI + E
Sbjct: 148 PEQKKTLLERYTVKETQILSLTQLVKCVNLPRIQITDPIARYYGMKRGQVVKIIRASETA 207
Query: 219 NSLVTYRCVV 190
VTYR VV
Sbjct: 208 GRYVTYRYVV 217
[165][TOP]
>UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2H038_CHAGB
Length = 220
Score = 65.9 bits (159), Expect = 2e-09
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
IL+ ++ ARK + +E D++VN T KHV+L+ K LLK+
Sbjct: 113 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKR 172
Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
Y+++E QLP +L DP+A Y GL++GQVVKI + E +YR V
Sbjct: 173 YRLKETQLPRILSKDPIARYLGLKKGQVVKIIRTSETAGRYASYRLCV 220
[166][TOP]
>UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major
RepID=Q4QDW4_LEIMA
Length = 239
Score = 65.5 bits (158), Expect = 3e-09
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361
E R++ + SK P RK ++ + E+ + +++ VN T KH L+
Sbjct: 123 EGYQRIVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSE 182
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+++L + +E QLP +L TDP+A YYGL RGQVV+I VTYR VV
Sbjct: 183 EELRDVLHAHALELNQLPRILSTDPVARYYGLRRGQVVRIERKSMSAGLYVTYRQVV 239
[167][TOP]
>UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP
Length = 216
Score = 65.5 bits (158), Expect = 3e-09
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARK---ELENCQHAVEIIKLNDVVVNPT------KHVVLT 364
+ ++ I+++ K+T +A++ + + +E ++++VN T KH +++
Sbjct: 98 IKQDGFQNSIIVLHGKLTSHAKQAINSINSLDDKIEYFSESELIVNITEHNLVPKHEIIS 157
Query: 363 AAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYR 199
+ L K+Y I E QLP + + DP+A Y+GL++ Q++KI S E VTYR
Sbjct: 158 EEEARCLFKRYSIRENQLPRINKRDPIARYFGLQKNQIMKIIRSSETSGRYVTYR 212
[168][TOP]
>UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR
Length = 234
Score = 65.5 bits (158), Expect = 3e-09
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPT------KHVVLTAAGKQELLKK 334
I I ++ ARK + VE D++VN T KHV+L+ K LLK+
Sbjct: 127 IFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKR 186
Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
Y+++E QLP +L DP+A Y GL+RGQVVKI E +YR V
Sbjct: 187 YRLKETQLPRILSKDPIARYLGLKRGQVVKIIRVSETAGRYASYRLCV 234
[169][TOP]
>UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UZB4_PHANO
Length = 277
Score = 65.5 bits (158), Expect = 3e-09
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Frame = -1
Query: 423 VEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
+E+ D++VN TKH V+L+A K +LL +Y+++E QLP + TDP+A + GL
Sbjct: 194 IEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLTRYRLKETQLPRIQSTDPVAKFLGLR 253
Query: 261 RGQVVKISHSGEVFNSLVTYRCVV 190
RG VVKI E +YR V+
Sbjct: 254 RGSVVKIIRKSETAGRYASYRWVI 277
[170][TOP]
>UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
braziliensis RepID=A4H9I9_LEIBR
Length = 239
Score = 65.1 bits (157), Expect = 4e-09
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361
E R++ + SK P RK ++ + E+ + +++ VN T KH L+
Sbjct: 123 EGYQRVVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSE 182
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
+++L + +E QLP +L TDP+A YYGL+RGQVV+I VTYR VV
Sbjct: 183 EELKDVLHAHALELHQLPRILSTDPVARYYGLKRGQVVRIERKSMSAGLYVTYRQVV 239
[171][TOP]
>UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi
RepID=Q8T1Q5_TRYCR
Length = 219
Score = 64.7 bits (156), Expect = 5e-09
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Frame = -1
Query: 564 TDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLND 400
++ + + H Q ++ R+I++V+ ++ ++ +E+ + +++ +D
Sbjct: 85 SEGLSMETMKRYHTQ-ASEANCDRVIIVVQGRINAIVKRHVEDINRSSLGLKIQLFDEDD 143
Query: 399 VVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
+VVN T KH L +E+L+ + +E LP +L TDP+A+Y GLERG+VV+I
Sbjct: 144 LVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRILSTDPVAAYLGLERGRVVRIE 203
Query: 237 HSGEVFNSLVTYRCVV 190
VTYR VV
Sbjct: 204 RKSMSAGFYVTYRQVV 219
[172][TOP]
>UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
infantum RepID=A4HXV2_LEIIN
Length = 239
Score = 64.7 bits (156), Expect = 5e-09
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Frame = -1
Query: 507 ERLSRLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTA 361
E R++ + SK P RK ++ + E+ + +++ VN T KH L+
Sbjct: 123 EGYQRVVFVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHSPLSE 182
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
++L+ + +E QLP +L TDP+A YYGL+RGQVV+I VTYR VV
Sbjct: 183 EELTDVLQAHALELNQLPRILSTDPVARYYGLKRGQVVRIERKSMSAGLYVTYRQVV 239
[173][TOP]
>UniRef100_A2DEU9 RNA polymerase Rpb5, C-terminal domain containing protein n=1
Tax=Trichomonas vaginalis G3 RepID=A2DEU9_TRIVA
Length = 217
Score = 64.7 bits (156), Expect = 5e-09
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Frame = -1
Query: 453 RKELENCQHAVEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRT 292
+K+L +E L ++ N T KH VL+ K EL +YKI+E +LP +L T
Sbjct: 124 KKQLRLIGKKLETFTLQELQYNITMHFFVPKHKVLSNEEKNELFNRYKIDETKLPQILST 183
Query: 291 DPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
DP+ YYG + G +++I+ E +VTYR V+
Sbjct: 184 DPVVRYYGADPGAIIEITRRSETCGRVVTYRLVI 217
[174][TOP]
>UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina
RepID=B2AZ24_PODAN
Length = 235
Score = 64.3 bits (155), Expect = 7e-09
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Frame = -1
Query: 489 ILIVESKMTPYARKELENCQH--AVEIIKLNDVVVNPTKH------VVLTAAGKQELLKK 334
IL+ ++ ARK + +E D++VN T H ++L+ K LLK+
Sbjct: 128 ILVTAVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKR 187
Query: 333 YKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
Y+++E QLP +L+ DP+A Y GL+RGQVVKI E +YR V
Sbjct: 188 YRLKETQLPRILQKDPIARYLGLKRGQVVKIVRISETAGRYASYRLCV 235
[175][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
Length = 278
Score = 63.5 bits (153), Expect = 1e-08
Identities = 33/101 (32%), Positives = 62/101 (61%), Gaps = 8/101 (7%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H
Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148
Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQ 253
VV+T ELL +YK+ E QLP + DP+A Y+G++RGQ
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQ 189
[176][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
isoform 1 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A3E0E
Length = 208
Score = 63.5 bits (153), Expect = 1e-08
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H
Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148
Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRC 196
VV+T ELL +YK+ E QLP + D A Y+G + +VVKI E +TYR
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFG--KSEVVKIIRPSETAGRYITYRL 206
Query: 195 V 193
V
Sbjct: 207 V 207
[177][TOP]
>UniRef100_Q4YN14 Putative uncharacterized protein n=1 Tax=Plasmodium berghei
RepID=Q4YN14_PLABE
Length = 117
Score = 63.5 bits (153), Expect = 1e-08
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Frame = -1
Query: 396 VVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISH 235
VVN TKH + LT+ K+ LL++YKI+E +LP + DP+ Y+GL +GQVVKI
Sbjct: 16 VVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQDVDPVCRYFGLSKGQVVKIIR 75
Query: 234 SGEVFNSLVTYRCVV 190
E VTYR V+
Sbjct: 76 PSETAGRYVTYRLVM 90
[178][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
polymerases I, II, and III subunit ABC1) (DNA-directed
RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
lupus familiaris RepID=UPI0000EB19D6
Length = 212
Score = 63.2 bits (152), Expect = 1e-08
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 10/123 (8%)
Frame = -1
Query: 531 IHNQIVNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKH------ 376
++ Q + +E ++R +++V+ MTP A++ L + ++ +E ++++N T+H
Sbjct: 89 VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEH 148
Query: 375 VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERG--QVVKISHSGEVFNSLVTY 202
VV+T ELL +YK+ E QLP + D A Y+G QVVKI E +TY
Sbjct: 149 VVMTKEEVTELLARYKLRENQLPRIQAGDQKARYFGKSEADPQVVKIIRPSETAGRYITY 208
Query: 201 RCV 193
R V
Sbjct: 209 RLV 211
[179][TOP]
>UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative
(Fragment) n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5LN15_9ALVE
Length = 168
Score = 60.8 bits (146), Expect = 7e-08
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTKHVV------LTA 361
+ ++RLSR IL+V+ +T +A+ ++ Q +E+ +++VVN T H + LTA
Sbjct: 63 MEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLTA 122
Query: 360 AGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
K+ LL++YK++E QLP + +DP V+KI E VTYR V
Sbjct: 123 EEKRLLLERYKVKENQLPRIQSSDP-----------VMKIIRPSETAGRYVTYRLCV 168
[180][TOP]
>UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1
Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH
Length = 202
Score = 60.8 bits (146), Expect = 7e-08
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Frame = -1
Query: 573 FTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVV 394
FT D + K + I N+ +S+LILI +K+ A L+ ++E+ D++
Sbjct: 69 FTSNDKLSKKQIETIITDYSNQS-ISKLILISCNKLNHAALAYLDKSNFSIELFLYKDIL 127
Query: 393 VNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
NPTKH+ +++ K LL K LP +L+ D +A Y G E V++I+
Sbjct: 128 FNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPIILKKDVIAKYLGAELNDVIEITRK 187
Query: 231 GEVFNSLVTYRCV 193
+ YR V
Sbjct: 188 SKTTGESKYYRVV 200
[181][TOP]
>UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE
Length = 223
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Frame = -1
Query: 429 HAVEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYG 268
++ E+ +D+V + TKH ++L K+ LLKKY + + QLP +L++DP+A + G
Sbjct: 138 YSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGLVDNQLPRILQSDPIARFLG 197
Query: 267 LERGQVVKISHSGEVFNSLVTYRCVV 190
L G VVKI E VTYR +
Sbjct: 198 LHHGDVVKIIRKSETAGLYVTYRIAI 223
[182][TOP]
>UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4VBP1_NOSCE
Length = 204
Score = 60.5 bits (145), Expect = 1e-07
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Frame = -1
Query: 573 FTGTDNIRKSNLTAIHNQIVNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVV 394
F + I KS++ + + + LIL++ KM+ ++ + +EI K +++
Sbjct: 65 FIDDEKIGKSSIEKVI-ETYKSINIYHLILVINQKMSSASQNIVNVSDLKIEIFKDEELM 123
Query: 393 VNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHS 232
N TKHV +L K +L+K KI Q+P +L+ DP+ + G E GQVV+I+
Sbjct: 124 FNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKILKRDPVCRFLGAESGQVVEITRK 183
Query: 231 GEVFNSLVTYRCV 193
+ Y+ V
Sbjct: 184 SRTAGESIFYKVV 196
[183][TOP]
>UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE
Length = 224
Score = 60.1 bits (144), Expect = 1e-07
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Frame = -1
Query: 429 HAVEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYG 268
++ E+ +D+V + TKH ++L K+ LLKKY + + QLP +L++DP+A + G
Sbjct: 139 YSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPRILQSDPIARFLG 198
Query: 267 LERGQVVKISHSGEVFNSLVTYRCVV 190
L G VVKI E VTYR +
Sbjct: 199 LHHGDVVKIIRKSETAGLYVTYRIAI 224
[184][TOP]
>UniRef100_C5YQI4 Putative uncharacterized protein Sb08g001130 n=1 Tax=Sorghum
bicolor RepID=C5YQI4_SORBI
Length = 274
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/75 (38%), Positives = 45/75 (60%)
Frame = -1
Query: 417 IIKLNDVVVNPTKHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKIS 238
++ + V+ P KH VLT K +L K Y + + LP ML +D +A Y G +G VVK++
Sbjct: 200 LVNITKHVLKP-KHEVLTVEEKVKLQKDYNVVDSHLPLMLESDAVAHYQGFRQGTVVKVT 258
Query: 237 HSGEVFNSLVTYRCV 193
+ E+ + VTYRC+
Sbjct: 259 YDNELTGNHVTYRCI 273
[185][TOP]
>UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1
Tax=Trypanosoma brucei RepID=Q388R5_9TRYP
Length = 219
Score = 59.7 bits (143), Expect = 2e-07
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Frame = -1
Query: 495 RLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTAAGKQ 349
R+I++ K+ ++ ++ + V++ +D+VVN T KH L +
Sbjct: 107 RVIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVK 166
Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
E+L+ + +E LP +L TDP+A+Y GLERG+VV+I VTYR VV
Sbjct: 167 EMLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQVV 219
[186][TOP]
>UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2
Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG
Length = 219
Score = 59.7 bits (143), Expect = 2e-07
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Frame = -1
Query: 495 RLILIVESKMTPYARKELENCQHA-----VEIIKLNDVVVNPT------KHVVLTAAGKQ 349
R+I++ K+ ++ ++ + V++ +D+VVN T KH L +
Sbjct: 107 RVIIVTHGKVNATVKRYVDCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVK 166
Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCVV 190
E+L+ + +E LP +L TDP+A+Y GLERG+VV+I VTYR VV
Sbjct: 167 EMLEAHSLELNMLPRILSTDPVAAYLGLERGRVVRIERKSVSAGFYVTYRQVV 219
[187][TOP]
>UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7ECH0_SCLS1
Length = 242
Score = 59.3 bits (142), Expect = 2e-07
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Frame = -1
Query: 423 VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
+E D++VN T KHV+L+ + +LL +Y++++ QLP + DP+A Y GL
Sbjct: 158 IETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYRLKDTQLPRIQAADPVAKYLGLR 217
Query: 261 RGQVVKISHSGEVFNSLVTYR 199
RGQVVKI E +YR
Sbjct: 218 RGQVVKIIRKSETAGRYASYR 238
[188][TOP]
>UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
B05.10 RepID=A6SPK6_BOTFB
Length = 242
Score = 59.3 bits (142), Expect = 2e-07
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Frame = -1
Query: 423 VEIIKLNDVVVNPT------KHVVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
+E D++VN T KHV+L+ + +LL +Y++++ QLP + DP+A Y GL
Sbjct: 158 IETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYRLKDTQLPRIQAADPVAKYLGLR 217
Query: 261 RGQVVKISHSGEVFNSLVTYR 199
RGQVVKI E +YR
Sbjct: 218 RGQVVKIIRKSETAGRYASYR 238
[189][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LUR5_ARATH
Length = 178
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = -1
Query: 423 VEIIKLNDVVVNPTKHV------VLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
+E+ + +++VN +HV LT KQ+ L++ + LP + TDP+A Y+GL+
Sbjct: 95 IEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLERKRTRFVVLPRIHVTDPIARYFGLK 154
Query: 261 RGQVVKISHSGEVFNSLVTYRCVV 190
RG+VVKIS E +TYR V+
Sbjct: 155 RGEVVKISRLSETSGRYITYRYVI 178
[190][TOP]
>UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SWJ6_PHYPA
Length = 211
Score = 58.9 bits (141), Expect = 3e-07
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENC--QHAVEIIKLNDVVVNPTK------HVVLTA 361
+ +E + R + +V+ +TP +++ + ++ +E+ + +VN T+ H +LT
Sbjct: 91 MKRENVPRAVFVVQQHITPLSKQYISRKAQKYHLEVFLEPEFLVNITECYLVPLHEILTP 150
Query: 360 AGKQELLKKYK----IEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
K LL++Y + LP M DP+A YYG+ GQVVKI S E VTYR
Sbjct: 151 EEKNTLLERYTEGNPVMLVLLPWMQHNDPVARYYGINPGQVVKIIQSSETAGRYVTYRLF 210
Query: 192 V 190
V
Sbjct: 211 V 211
[191][TOP]
>UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE
Length = 176
Score = 58.2 bits (139), Expect = 5e-07
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Frame = -1
Query: 402 DVVVNPTKHVVL------TAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVK- 244
++VVN TKH ++ T K LL++YK++E+QLP + TDP+A Y GL+RGQVVK
Sbjct: 99 ELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIKVTDPIARYLGLKRGQVVKI 158
Query: 243 ISHSGEVFNSLVTYRCV 193
I + V+YR V
Sbjct: 159 IRENSPTAGRYVSYRLV 175
[192][TOP]
>UniRef100_UPI000155C2F2 PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide E, 25kDa n=1 Tax=Ornithorhynchus anatinus
RepID=UPI000155C2F2
Length = 60
Score = 56.6 bits (135), Expect = 1e-06
Identities = 26/52 (50%), Positives = 34/52 (65%)
Frame = -1
Query: 348 ELLKKYKIEEKQLPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
ELL +YK+ E QLP + DP+A Y+G++RGQVVKI E +TYR V
Sbjct: 8 ELLARYKLRENQLPRIQAGDPVARYFGIKRGQVVKIIRPSETAGRYITYRLV 59
[193][TOP]
>UniRef100_A7QJL5 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QJL5_VITVI
Length = 67
Score = 56.6 bits (135), Expect = 1e-06
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = -1
Query: 312 LPHMLRTDPMASYYGLERGQVVKISHSGEVFNSLVTYRCV 193
LP ML+ D +A YYGLE+GQVVK+ ++GE+ S VTYRCV
Sbjct: 27 LPRMLQQDAIARYYGLEKGQVVKVIYNGEITGSHVTYRCV 66
[194][TOP]
>UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide E, partial n=1 Tax=Hydra magnipapillata
RepID=UPI0001925DCF
Length = 187
Score = 54.7 bits (130), Expect = 5e-06
Identities = 30/90 (33%), Positives = 52/90 (57%)
Frame = -1
Query: 516 VNKERLSRLILIVESKMTPYARKELENCQHAVEIIKLNDVVVNPTKHVVLTAAGKQELLK 337
+ +E ++R I++V++ MTP A++ + +HVVL+ K ELL
Sbjct: 78 MQEEGINRAIIVVQTGMTPSAKQLVP-------------------EHVVLSPEEKAELLT 118
Query: 336 KYKIEEKQLPHMLRTDPMASYYGLERGQVV 247
+YK+++ QLP + + D +A Y+GL+RGQ V
Sbjct: 119 RYKLKDHQLPRIQQGDTIARYFGLKRGQFV 148
[195][TOP]
>UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans
RepID=Q3LW39_BIGNA
Length = 204
Score = 54.7 bits (130), Expect = 5e-06
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Frame = -1
Query: 423 VEIIKLNDVVVNPTKH------VVLTAAGKQELLKKYKIEEKQLPHMLRTDPMASYYGLE 262
+EI ++++NP KH V+L K+++LK Y +++ QLP + +DP++ YYG +
Sbjct: 121 IEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIKLSDPISKYYGAK 180
Query: 261 RGQVVKISHSGEVFNSLVTYRCV 193
+G + KI E ++YR +
Sbjct: 181 KGNMFKIIRFSENIGVYLSYRII 203