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[1][TOP]
>UniRef100_P03589 Methyltransferase n=1 Tax=Alfalfa mosaic virus (strain 425 / isolate
Leiden) RepID=ORF1A_AMVLE
Length = 1126
Score = 392 bits (1006), Expect = e-107
Identities = 191/192 (99%), Positives = 192/192 (100%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT
Sbjct: 865 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 924
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN
Sbjct: 925 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 984
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K+PVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH
Sbjct: 985 KKPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 1044
Query: 542 EAQGKTFDNVYF 577
EAQGKTFDNVYF
Sbjct: 1045 EAQGKTFDNVYF 1056
[2][TOP]
>UniRef100_P89033 Putative viral replicase n=1 Tax=Prune dwarf virus RepID=P89033_9BROM
Length = 1055
Score = 228 bits (580), Expect = 3e-58
Identities = 112/192 (58%), Positives = 143/192 (74%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSSA ELKE ++ S L K +IRTCDSYLM+ +A KA++++FDECF+QHAG++YAAAT
Sbjct: 797 SNRSSAIELKEAVEGSQLVKSRFIRTCDSYLMTNNAPKAKKMLFDECFMQHAGVIYAAAT 856
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
+AG SEVI FGDTEQIPF+SRN F+ +HH L G ++ IT+R+PAD Y L K+FY+
Sbjct: 857 IAGVSEVIAFGDTEQIPFISRNDMFLLKHHVLKGDHVKQTITYRNPADTVYALSKFFYRK 916
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K PVKT +LRSI+V PIN+ VE + +A+Y+ HTQAEKA L A K C I+TTH
Sbjct: 917 KTPVKTKRHILRSIKVKPINALSQVEVDASAVYVTHTQAEKASLLATPSFKSC-KIYTTH 975
Query: 542 EAQGKTFDNVYF 577
E QG +FD V F
Sbjct: 976 EVQGGSFDKVIF 987
[3][TOP]
>UniRef100_C7T303 p1 protein n=1 Tax=Parietaria mottle virus RepID=C7T303_9BROM
Length = 1097
Score = 203 bits (516), Expect = 9e-51
Identities = 110/193 (56%), Positives = 137/193 (70%), Gaps = 1/193 (0%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSS+DELKE + C K + IRT DSYLM S A R++FDECFL HAG VYAAAT
Sbjct: 838 SNRSSSDELKEALTCPDAMK-YRIRTVDSYLMLKSWFSASRMLFDECFLTHAGCVYAAAT 896
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA SEVI GDTEQ+PF+SR P F +HHKL+G++E + T+R P DATYCL+ FYKN
Sbjct: 897 LAQVSEVIALGDTEQVPFISRLPEFRMQHHKLSGEIETQTTTYRCPRDATYCLKSMFYKN 956
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
K VK+ S V RSIE+VPI+SP+ + + LY+ HT+A+K A+LK K +NI TT
Sbjct: 957 K-SVKSASVVERSIELVPISSPIQIPCENDVLYITHTRADKDALLKIPGFKK--ENIKTT 1013
Query: 539 HEAQGKTFDNVYF 577
HEAQG T+D V +
Sbjct: 1014 HEAQGDTWDKVVY 1026
[4][TOP]
>UniRef100_Q6RK14 P1 protein n=1 Tax=Parietaria mottle virus RepID=Q6RK14_9BROM
Length = 1098
Score = 202 bits (515), Expect = 1e-50
Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSS+DELKE + C K + IRT DSYLM S A R++FDECFL HAG VYAAAT
Sbjct: 839 SNRSSSDELKEALTCPEAMK-YRIRTVDSYLMLKSWFSASRMLFDECFLTHAGCVYAAAT 897
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA SEVI GDTEQ+PF+SR P F +HHKL+G++E + T+R P DATYCL+ FYKN
Sbjct: 898 LAQVSEVIALGDTEQVPFISRLPEFRMQHHKLSGEIETQTTTYRCPRDATYCLKSMFYKN 957
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
K VKT S V RSI++VPI+SP+ + + LY+ HT+A+K A+LK K +NI TT
Sbjct: 958 K-SVKTASVVERSIDLVPISSPIQIPCENDVLYITHTRADKDALLKIPGFKK--ENIKTT 1014
Query: 539 HEAQGKTFDNV 571
HEAQG T+D V
Sbjct: 1015 HEAQGDTWDKV 1025
[5][TOP]
>UniRef100_Q2PMD3 Replicase n=1 Tax=Strawberry necrotic shock virus RepID=Q2PMD3_9BROM
Length = 1090
Score = 202 bits (515), Expect = 1e-50
Identities = 109/191 (57%), Positives = 137/191 (71%), Gaps = 1/191 (0%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSS+DELK TI+C+ K + IRT DSYLM + + RL+FDECFL HAG +YAAAT
Sbjct: 830 SNRSSSDELKSTINCAEAMK-YRIRTVDSYLMLKTWFSSDRLLFDECFLTHAGCIYAAAT 888
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI GDTEQ+PF+SR P F +HHKL G +E + T+R P DAT CL+ +FYK
Sbjct: 889 LAQVKEVIALGDTEQVPFISRLPEFRVQHHKLCGNIEVQTTTYRCPRDATACLKNFFYK- 947
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
K+ VK+ SRV RS+E+ PINS V + R N LY+ HT+A+K A++K +K DNI TT
Sbjct: 948 KKTVKSASRVERSLELCPINSAVQIPRVENTLYMTHTRADKDALMKIPGFVK--DNIKTT 1005
Query: 539 HEAQGKTFDNV 571
HEAQG T+DNV
Sbjct: 1006 HEAQGDTWDNV 1016
[6][TOP]
>UniRef100_B9VV81 p1 protein (Fragment) n=1 Tax=Bacopa chlorosis virus
RepID=B9VV81_9BROM
Length = 1054
Score = 202 bits (514), Expect = 2e-50
Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSSADELKET+ CS K + IRT DS+LM + A RL+FDECFL HAG VYAAA+
Sbjct: 837 SNRSSADELKETLTCSDAMK-YRIRTVDSFLMLKNWFSADRLLFDECFLTHAGCVYAAAS 895
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI GDTEQ+PF+SR P F +HHKL+GK+E + T+R P DATYCL+ FYK
Sbjct: 896 LAQVKEVIALGDTEQVPFISRLPEFRMQHHKLSGKIECQTTTYRCPRDATYCLKTQFYKT 955
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
K VKT S V RSI+++PI+SP+ + N LY+ HT+A+K A++K K NI TT
Sbjct: 956 K-SVKTASVVERSIDLIPISSPIQIPCEDNVLYITHTRADKDALMKIPGFNK--SNIKTT 1012
Query: 539 HEAQGKTFDNV 571
HEAQG T+DNV
Sbjct: 1013 HEAQGDTWDNV 1023
[7][TOP]
>UniRef100_Q2QF35 Replicase n=1 Tax=Blackberry chlorotic ringspot virus
RepID=Q2QF35_9BROM
Length = 1093
Score = 199 bits (505), Expect = 2e-49
Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSS+DELK+TIDC+ K + IRT DSYLM S + RL+FDECFL HAG VYAAAT
Sbjct: 833 SNRSSSDELKDTIDCAEAMK-YRIRTVDSYLMLKSWFSSDRLLFDECFLTHAGCVYAAAT 891
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI GDTEQ+PF+SR P F ++HKL GK+E + T+R P DAT CL+ +FYK
Sbjct: 892 LAQVKEVIALGDTEQVPFISRLPEFKVQYHKLCGKIEVQTTTYRCPRDATACLKTFFYKR 951
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
K VK+ SRV RS+E+ PINS V + N LY+ HT+A+K A++K K +NI TT
Sbjct: 952 K-TVKSASRVDRSLELCPINSAVQIPCVENTLYMTHTRADKDALMKIPGFNK--NNIKTT 1008
Query: 539 HEAQGKTFDNV 571
HEAQG T+DNV
Sbjct: 1009 HEAQGDTWDNV 1019
[8][TOP]
>UniRef100_B7TX62 Replicase n=1 Tax=Tobacco streak virus RepID=B7TX62_9BROM
Length = 1094
Score = 199 bits (505), Expect = 2e-49
Identities = 106/190 (55%), Positives = 134/190 (70%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSS+DELKE IDC + K + IRT DSYLM S A+RL+FDECFL HAG VYAAAT
Sbjct: 836 SNRSSSDELKEVIDCPDVMK-YRIRTVDSYLMLKSWFSAERLLFDECFLTHAGCVYAAAT 894
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI FGDTEQ+PF+SR P F HHK+ GK++ + T+R P DAT CL+K+FYKN
Sbjct: 895 LAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKIDVQTTTYRCPRDATACLKKFFYKN 954
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K VK+ S V RS+E+ PI S + ++ + LY+ HT+A+K L + D I TTH
Sbjct: 955 K-TVKSASVVDRSLELCPIQSVIQIQPERDVLYMTHTRADKETLMRIPGMPK-DRIKTTH 1012
Query: 542 EAQGKTFDNV 571
EAQG+T+D+V
Sbjct: 1013 EAQGETWDHV 1022
[9][TOP]
>UniRef100_Q5QDM5 Replicase n=1 Tax=Fragaria chiloensis latent virus RepID=Q5QDM5_9BROM
Length = 1083
Score = 198 bits (504), Expect = 2e-49
Identities = 99/192 (51%), Positives = 131/192 (68%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSSA++L I + + K Y+RTCDS+LM+ S A+++ FDECF+QHAG +YAAAT
Sbjct: 815 SNRSSAEDLSIKIPGTRIVKSRYVRTCDSFLMTNSPPTAKKMFFDECFMQHAGCIYAAAT 874
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA CSEV +GD EQIPF+SR S F H KL GKV ++L+T+R P DAT L K+ YK
Sbjct: 875 LARCSEVYAYGDKEQIPFISRCDSIRFTHEKLEGKVVQQLVTYRCPVDATAALSKFLYKK 934
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K+ + T V RSI +VPIN+ +E + A+Y+ HTQAEK L++ +F+TH
Sbjct: 935 KKNIVTRRNVDRSISIVPINAVSQIEIDDKAVYITHTQAEKKALQSADGFSRM-KVFSTH 993
Query: 542 EAQGKTFDNVYF 577
EA+G TFD VYF
Sbjct: 994 EAEGGTFDKVYF 1005
[10][TOP]
>UniRef100_Q6JE42 Replicase n=1 Tax=Humulus japonicus latent virus RepID=Q6JE42_9BROM
Length = 1041
Score = 195 bits (496), Expect = 2e-48
Identities = 101/191 (52%), Positives = 135/191 (70%), Gaps = 1/191 (0%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNR+++ EL+E I SPL K Y+RTCDSYLM++ KA+RL+FDECF++HAG VYAAAT
Sbjct: 784 SNRNASIELREVIKASPLMKAKYVRTCDSYLMASRPEKARRLLFDECFMRHAGFVYAAAT 843
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA C EV+ +GDTEQIP +SRNP+F FR HKL G++ ++ +T+R PADA Y L K+FYK
Sbjct: 844 LAECEEVLAYGDTEQIPEISRNPAFKFRCHKLEGEIVQQTVTYRCPADAVYVLNKHFYKT 903
Query: 362 KRPVKT-NSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538
KR +KT +RS+ + INS +V + +ALYL +TQAEK LK+ G + T
Sbjct: 904 KRNIKTKRHNPMRSLNIHAINSVRAVPVDKSALYLTYTQAEKEQLKSA--FPGV-KVLTV 960
Query: 539 HEAQGKTFDNV 571
HEA+G + V
Sbjct: 961 HEAEGASVPKV 971
[11][TOP]
>UniRef100_Q997A4 Putative viral replicase p1 n=1 Tax=American plum line pattern virus
RepID=Q997A4_9BROM
Length = 1062
Score = 176 bits (446), Expect = 1e-42
Identities = 96/193 (49%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNR+SA+EL+ + S L K IRT DSYLM+ + A + FDECFLQH+G++ AA T
Sbjct: 794 SNRNSAEELRSKVRGSQLVKSRVIRTVDSYLMAKNPPTADVVYFDECFLQHSGVILAAVT 853
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-LITWRSPADATYCLEKYFYK 358
LA ++ FGDTEQIPF+SRNP F F+H LT + L T+RSPADAT+ L KYFYK
Sbjct: 854 LAKAKKLYAFGDTEQIPFISRNPLFRFKHRFLTSNRRIECLDTFRSPADATFLLGKYFYK 913
Query: 359 NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538
K +KT SRV SI V PI+ +E + +A+Y C+ QAEKA L ++ K + + T
Sbjct: 914 KKSQIKTTSRVQPSISVKPISVHDQIEVDKSAIYCCYIQAEKAELLSKPQFKNME-VATI 972
Query: 539 HEAQGKTFDNVYF 577
HE QG++ D V F
Sbjct: 973 HEKQGESVDKVIF 985
[12][TOP]
>UniRef100_Q9QGH0 Putative methyltransferase/helicase n=1 Tax=Apple mosaic virus
RepID=Q9QGH0_9BROM
Length = 1046
Score = 172 bits (435), Expect = 2e-41
Identities = 100/193 (51%), Positives = 131/193 (67%), Gaps = 1/193 (0%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSSA EL+E + SPL+K +RTCDS+LM+ S +K++R+IFDECFLQHAG VYAAAT
Sbjct: 785 SNRSSAMELREKLVGSPLSKSQRVRTCDSFLMNGSKIKSKRIIFDECFLQHAGCVYAAAT 844
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVER-KLITWRSPADATYCLEKYFYK 358
+A E++ FGDT+QIPFVSR P R+HK++ R +T+RSPAD T L K+FY
Sbjct: 845 IAEAEELVMFGDTQQIPFVSRIPYMKLRNHKVSADERRAHNMTYRSPADTTMALSKWFY- 903
Query: 359 NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538
K+ ++T +R +RS+ V PI S V+ N LY+ HTQAEK L A T + + T+
Sbjct: 904 -KKSIRTANRTIRSMIVKPIVSVNQVD-NDFELYITHTQAEKHTLIA-TGKFDKNKVHTS 960
Query: 539 HEAQGKTFDNVYF 577
EAQG T NV F
Sbjct: 961 AEAQGMTERNVAF 973
[13][TOP]
>UniRef100_Q99HR1 Viral replicase p1 n=1 Tax=Tulare apple mosaic virus
RepID=Q99HR1_9BROM
Length = 1060
Score = 165 bits (418), Expect = 2e-39
Identities = 85/190 (44%), Positives = 124/190 (65%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
+NR +A + +E+ + K + +RT DSY+M A+R++ DECFL H+G++YAAAT
Sbjct: 803 ANRETAKDARESGSIPDVMK-YRVRTLDSYIMLKKWFTAERMLVDECFLVHSGIIYAAAT 861
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA E+I FGDT+QIPFVSR P+F +H + G ++ KL+T+R P DAT L + FYK
Sbjct: 862 LAQVKEIIAFGDTKQIPFVSRIPTFTLKHPSIKGVLKPKLVTYRCPRDATAVLSEKFYKK 921
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K VKT + + S+ ++ INS + + + LY+ HTQA+K + + +N+ TTH
Sbjct: 922 K--VKTFNPISSSLSLININSGMEIPAERDTLYIMHTQADKCAMLRHPGI-NANNVMTTH 978
Query: 542 EAQGKTFDNV 571
EAQGKTFDNV
Sbjct: 979 EAQGKTFDNV 988
[14][TOP]
>UniRef100_B7T2J3 Replicase (Fragment) n=1 Tax=Lilac ring mottle virus
RepID=B7T2J3_9BROM
Length = 621
Score = 165 bits (418), Expect = 2e-39
Identities = 87/177 (49%), Positives = 117/177 (66%), Gaps = 7/177 (3%)
Frame = +2
Query: 62 LHY-IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238
LHY +RT DSYLM + +RL+ DECFL H+G +YAAATLA EV+ FGDT+QIPF+
Sbjct: 374 LHYRVRTLDSYLMMKTWFTGERLLVDECFLVHSGAIYAAATLARVKEVLAFGDTKQIPFI 433
Query: 239 SRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418
SR P+F RH L G ++ + +T+R P DAT LEK+FY KRP+KT S V S+++ PI
Sbjct: 434 SRIPTFPIRHASLNGVLKPRNVTFRCPRDATAALEKFFY--KRPIKTASAVSNSMQIHPI 491
Query: 419 NSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN------IFTTHEAQGKTFDNV 571
+S ++V N LY+ HTQA+K L + + C +TH+AQGKT+DNV
Sbjct: 492 SSVMNVPVEKNTLYITHTQADKCNLLQRNGINACVTTDECALALSTHKAQGKTYDNV 548
[15][TOP]
>UniRef100_Q9IMN1 Replicase 1a (Fragment) n=1 Tax=Hydrangea mosaic virus
RepID=Q9IMN1_9BROM
Length = 387
Score = 162 bits (410), Expect = 2e-38
Identities = 93/190 (48%), Positives = 121/190 (63%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
+NR +A + K T P T L+ +RT DSYLM + A RL+ DECFL HAGL+YAAAT
Sbjct: 130 ANRETAKDAK-TSGVIPETLLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 188
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI FGDT+QIPFVSR P+ RH + GK++ + +T+R P D T L + FY
Sbjct: 189 LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGKLKPRTMTYRCPRDVTAVLSEKFYNT 248
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K V T + V S+E++ INS V + +ALY+ HT+A+K LK + D + TTH
Sbjct: 249 K--VGTFNPVKTSLELININSGVEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 305
Query: 542 EAQGKTFDNV 571
EAQGKT DNV
Sbjct: 306 EAQGKTRDNV 315
[16][TOP]
>UniRef100_Q98701 Replicase n=1 Tax=Elm mottle virus RepID=Q98701_9BROM
Length = 1055
Score = 162 bits (410), Expect = 2e-38
Identities = 93/190 (48%), Positives = 121/190 (63%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
+NR +A + K T P T L+ +RT DSYLM + A RL+ DECFL HAGL+YAAAT
Sbjct: 798 ANRETAKDAK-TSGVIPETLLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 856
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI FGDT+QIPFVSR P+ RH + GK++ + +T+R P D T L + FY
Sbjct: 857 LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGKLKPRTMTYRCPRDVTAVLSEKFYNT 916
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K V T + V S+E++ INS V + +ALY+ HT+A+K LK + D + TTH
Sbjct: 917 K--VGTFNPVKTSLELININSGVEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 973
Query: 542 EAQGKTFDNV 571
EAQGKT DNV
Sbjct: 974 EAQGKTRDNV 983
[17][TOP]
>UniRef100_Q91NQ1 Replicase p1 n=1 Tax=Prunus necrotic ringspot virus
RepID=Q91NQ1_9BROM
Length = 1045
Score = 162 bits (410), Expect = 2e-38
Identities = 99/188 (52%), Positives = 126/188 (67%), Gaps = 2/188 (1%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSSA EL+E + S L + +RT DSYLM+ + R+IFDECFLQHAG VYAAA+
Sbjct: 784 SNRSSAMELREKLPGSQLLRSTRVRTSDSYLMNPKRPSSVRVIFDECFLQHAGCVYAAAS 843
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG--KVERKLITWRSPADATYCLEKYFY 355
LAG E++ FGDT+QIPFVSR P F + H ++ KV L T+R PADAT L K+FY
Sbjct: 844 LAGAEELVLFGDTKQIPFVSRIPHFRLKDHLVSADEKVMSNL-TYRCPADATMALSKWFY 902
Query: 356 KNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFT 535
+R VKT + LRS+ V PI S ++R+ + LY+ HTQAEK L A + + D +FT
Sbjct: 903 --RRNVKTANTTLRSMSVKPIVSVSQIDRDFD-LYMTHTQAEKHTLIA-SGVVPKDKVFT 958
Query: 536 THEAQGKT 559
T EAQGKT
Sbjct: 959 TAEAQGKT 966
[18][TOP]
>UniRef100_P89680 Putative viral replicase n=1 Tax=Tobacco streak virus
RepID=P89680_9BROM
Length = 1094
Score = 158 bits (400), Expect = 3e-37
Identities = 90/190 (47%), Positives = 117/190 (61%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSS+DELKE IDC + K + IRT DSYLM S A+RL+FDECFL HAG VYAAAT
Sbjct: 836 SNRSSSDELKEVIDCPDVMK-YRIRTVDSYLMLKSWFSAERLLFDECFLTHAGCVYAAAT 894
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI FGDTEQ+PF+SR P F HHK+ GK+ + + L K +
Sbjct: 895 LAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKIS-CTTDHLQMSKRCHSLFKENFLQ 953
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K+ + + R E+ PI S + ++ + LY+ HT+A+K L + D I TTH
Sbjct: 954 KQDCEVSERCSSLAELCPIQSVIQIQPERDVLYMTHTRADKETLMRIPGMPK-DRIKTTH 1012
Query: 542 EAQGKTFDNV 571
EAQG+T+D+V
Sbjct: 1013 EAQGETWDHV 1022
[19][TOP]
>UniRef100_B8RCA3 Replicase n=1 Tax=Asparagus virus 2 RepID=B8RCA3_9BROM
Length = 1076
Score = 158 bits (400), Expect = 3e-37
Identities = 92/190 (48%), Positives = 120/190 (63%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
+NR +A + K T P L+ +RT DSYLM + A RL+ DECFL HAGL+YAAAT
Sbjct: 798 ANRETAKDAK-TSGVVPDALLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 856
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI FGDT+QIPFVSR P+ RH + G ++ + IT+R P D T L + FY
Sbjct: 857 LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGVLKPRTITYRCPRDVTAILSEKFYHT 916
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K VKT + V S++++ INS V + +ALY+ HT+A+K LK + D + TTH
Sbjct: 917 K--VKTFNPVKISLDLININSAVEIPVVKDALYITHTKADKFALKKLPGMGNVD-VLTTH 973
Query: 542 EAQGKTFDNV 571
EAQGKT DNV
Sbjct: 974 EAQGKTRDNV 983
[20][TOP]
>UniRef100_A5JVP4 Putative viral replicase n=1 Tax=Citrus variegation virus
RepID=A5JVP4_9BROM
Length = 1076
Score = 155 bits (393), Expect = 2e-36
Identities = 88/190 (46%), Positives = 119/190 (62%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
+NR +A + K + P L+ +RT DSYLM + A RL+ DECFL HAGL+YAAA
Sbjct: 798 ANRETAKDAKNS-GIIPDALLYRVRTVDSYLMLKNWFTAGRLLVDECFLVHAGLIYAAAA 856
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI FGDT+QIPFVSR P+ RH + G ++ + +T+R P D T L + FY
Sbjct: 857 LARVKEVIAFGDTKQIPFVSRIPAVTLRHASVIGTLKPRTVTYRCPRDVTAVLSEKFYNT 916
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K VKT + V S++++ INS + + +ALY+ HT+A+K LK + D + TTH
Sbjct: 917 K--VKTFNPVKTSLDLISINSGMEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 973
Query: 542 EAQGKTFDNV 571
EAQGKT DNV
Sbjct: 974 EAQGKTRDNV 983
[21][TOP]
>UniRef100_Q66108 Citrus leaf rugose ilarvirus putative viral replicase n=1 Tax=Citrus
leaf rugose virus RepID=Q66108_9BROM
Length = 1051
Score = 155 bits (392), Expect = 2e-36
Identities = 83/190 (43%), Positives = 120/190 (63%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
+NR +A + +E+ + K + +RT DSYLM A RL+ DECFL H+G++YAAAT
Sbjct: 789 ANRETARDARESGAIPDVLK-YRVRTLDSYLMLKKWFTADRLLVDECFLVHSGIIYAAAT 847
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
L E+I FGDT+QIPFVSR P+F +H + GK++ K IT+R P DAT L + FY+
Sbjct: 848 LGQVKEIIAFGDTKQIPFVSRIPTFSLKHPSIRGKLKPKTITYRCPRDATAVLSEKFYET 907
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
VKT + S+ ++ I+S + + + LY+ HTQA+K + + DN+ TTH
Sbjct: 908 N--VKTFNPTSSSLSLIDISSSMEIPAEKDTLYIMHTQADKCAMLRHPGINP-DNVMTTH 964
Query: 542 EAQGKTFDNV 571
EAQGKTF++V
Sbjct: 965 EAQGKTFNHV 974
[22][TOP]
>UniRef100_O57161 Putative replicase n=1 Tax=Spinach latent virus RepID=O57161_9BROM
Length = 1056
Score = 153 bits (386), Expect = 1e-35
Identities = 88/190 (46%), Positives = 119/190 (62%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
+NR +A++ K + P + +RT DSYLM + A+RL+ DECFL HAGLVYAAAT
Sbjct: 799 ANRETANDAKAS-GVIPKALEYRVRTVDSYLMLRTWFTAERLLVDECFLVHAGLVYAAAT 857
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
LA EVI FGDT+QIPFVSR P+ RH + G ++ + IT+R P D T L + FY
Sbjct: 858 LARVKEVIAFGDTKQIPFVSRIPTVKLRHASVVGTLKPRTITYRCPRDVTAVLSEKFYGT 917
Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
K VKT + V +S+E+ I+S + + LY+ HTQA+K L + G + + TTH
Sbjct: 918 K--VKTFNLVKQSLELKNIDSSTEIPVEKDTLYIAHTQADKHALMRLPGMNGIE-VLTTH 974
Query: 542 EAQGKTFDNV 571
EAQGKT D+V
Sbjct: 975 EAQGKTRDHV 984
[23][TOP]
>UniRef100_Q2F3J8 Replicase (Fragment) n=1 Tax=Blackberry chlorotic ringspot virus
RepID=Q2F3J8_9BROM
Length = 197
Score = 135 bits (339), Expect = 3e-30
Identities = 68/110 (61%), Positives = 82/110 (74%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
SNRSS+DELKETI C+ + K + IRT DSYLM S + RL+FDECFL HAG +YAAAT
Sbjct: 88 SNRSSSDELKETIKCADVMK-YRIRTVDSYLMLKSWFSSDRLLFDECFLTHAGCIYAAAT 146
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADAT 331
LA EVI GDTEQ+PF+SR P F +HHKL+GK+E + T+R P DAT
Sbjct: 147 LAQVKEVIALGDTEQVPFISRLPEFRVQHHKLSGKIEVQTTTYRCPRDAT 196
[24][TOP]
>UniRef100_Q9IWA9 Replication protein n=2 Tax=Oat golden stripe virus
RepID=Q9IWA9_9VIRU
Length = 1853
Score = 115 bits (289), Expect = 2e-24
Identities = 76/180 (42%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Frame = +2
Query: 59 KLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIP 232
+L IRT DSYLM ++A + FDE + HAG+VY A L G +VI GD++QIP
Sbjct: 1097 ELKRIRTVDSYLMHDCGKTLRASVVHFDEALMAHAGMVYFCADLLGAKKVICQGDSQQIP 1156
Query: 233 FVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEV 409
FV+R S ++ KL + E +T+RSP D + L Y + V T + VLRS+ V
Sbjct: 1157 FVNRVESISLQYAKLVIDRTESVRMTYRSPIDVAHYLNAKAYYDGGRVTTKNEVLRSMSV 1216
Query: 410 V------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
V P+NS V + YL TQAEK L KG ++ T HEAQGKTFDNV
Sbjct: 1217 VGPRGTRPMNSAYCVPYVKDTQYLTFTQAEKDDLFKALRSKGSVSVNTVHEAQGKTFDNV 1276
[25][TOP]
>UniRef100_Q89249 209 kDa readthrough protein n=2 Tax=Soil-borne wheat mosaic virus
RepID=Q89249_SBWMV
Length = 1828
Score = 110 bits (274), Expect = 1e-22
Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 12/200 (6%)
Frame = +2
Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
+ + ++LKE C+ + L IRT DS+LM +A + FDE + HAG+VY
Sbjct: 1053 KEATEDLKEKFMKKHKCAE-SDLKRIRTVDSFLMHDYDKFRAATVHFDEALMAHAGIVYF 1111
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349
A + G +VI GD++QIPF++R S ++ KL + E +T+RSP D + L K
Sbjct: 1112 CADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDETEYVRLTYRSPVDVAHYLTKK 1171
Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
+ + V T + VLRS++VV P+ S V + +A YL TQ+EKA L
Sbjct: 1172 SWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRDAQYLTFTQSEKADLYKALRA 1231
Query: 512 KGCDNIFTTHEAQGKTFDNV 571
KG + T HE QGKTFD+V
Sbjct: 1232 KGPVEVNTVHETQGKTFDDV 1251
[26][TOP]
>UniRef100_Q9JAD2 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD2_9VIRU
Length = 1816
Score = 107 bits (267), Expect = 7e-22
Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
Frame = +2
Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
+ + ++LKE + C+ + L +RT DS+LM +A + FDE + HAG+VY
Sbjct: 1041 KEATEDLKEKFSKRLKCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
A + G +V+ GD++QIPF++R S ++ KL E +T+RSP D + L K
Sbjct: 1100 CADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159
Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
Y + V T + LRS+ V P+ S V + YL TQ+EKA L
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRN 1219
Query: 512 KGCDNIFTTHEAQGKTFDNV 571
+G N+ T HE QGKTFDNV
Sbjct: 1220 RGPVNVNTVHETQGKTFDNV 1239
[27][TOP]
>UniRef100_Q9DJG6 Replication protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9DJG6_9VIRU
Length = 1816
Score = 107 bits (266), Expect = 9e-22
Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
Frame = +2
Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
+ + ++LKE + C+ T L +RT DS+LM +A + FDE + HAG+VY
Sbjct: 1041 KEATEDLKEKFAKRLKCTE-TALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
A + G V+ GD++QIPF++R S ++ KL E +T+RSP D + L K
Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159
Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
Y + V T + LRS+ V P+ S V + + YL TQ+EKA L
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219
Query: 512 KGCDNIFTTHEAQGKTFDNV 571
+G N+ T HE QGKTFD+V
Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239
[28][TOP]
>UniRef100_Q9JAD3 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD3_9VIRU
Length = 1816
Score = 105 bits (263), Expect = 2e-21
Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
Frame = +2
Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
+ + ++LKE + C+ + L +RT DS+LM +A + FDE + HAG+VY
Sbjct: 1041 KEATEDLKEKFSKRLKCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
A + G +V+ GD++QIPF++R S ++ KL E +T+RSP D + L K
Sbjct: 1100 CADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159
Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
Y + V T + LRS+ V P+ S V + YL TQ+EKA L
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRN 1219
Query: 512 KGCDNIFTTHEAQGKTFDNV 571
+G N+ T HE QGKTF+NV
Sbjct: 1220 RGPVNVNTVHETQGKTFENV 1239
[29][TOP]
>UniRef100_Q9JGK3 152-kDa protein n=1 Tax=Soil-borne wheat mosaic virus
RepID=Q9JGK3_SBWMV
Length = 1334
Score = 105 bits (262), Expect = 3e-21
Identities = 75/182 (41%), Positives = 97/182 (53%), Gaps = 10/182 (5%)
Frame = +2
Query: 56 TKLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQI 229
++L IRT DSYLM ++A + FDE + HAG VY A L G +VI GD++QI
Sbjct: 1085 SELGRIRTVDSYLMHDCGKKLRATTVHFDEALMTHAGAVYFCADLLGARKVICQGDSQQI 1144
Query: 230 PFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLE-KYFYKNKRPVKTNSRVLRSI 403
PFV+R S + KL K + +T+RSP D + L K FY R + T + V+RS+
Sbjct: 1145 PFVNRVESIKLQFAKLVIDKTDLIRMTYRSPIDVAHYLNYKSFYTGGR-ITTKNEVVRSM 1203
Query: 404 EVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
VV P+ S SV YL TQ EK L KG N+ T HE QGKTFD
Sbjct: 1204 SVVGPRNVRPMTSVYSVPYVPGVQYLTFTQTEKDDLFKALRSKGHVNVNTVHETQGKTFD 1263
Query: 566 NV 571
+V
Sbjct: 1264 DV 1265
[30][TOP]
>UniRef100_Q9JAD4 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD4_9VIRU
Length = 1816
Score = 105 bits (262), Expect = 3e-21
Identities = 71/200 (35%), Positives = 104/200 (52%), Gaps = 12/200 (6%)
Frame = +2
Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
+ + ++LKE + C+ T L +RT DS+LM +A + FDE + HAG+VY
Sbjct: 1041 KEATEDLKEKFAKRLKCTE-TALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
A + G V+ GD++QIPF++R S ++ KL E +T+RSP D + L K
Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159
Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
Y + V T + LRS+ V P+ S V + YL TQ+EK+ L
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRGAKPMTSVHCVPYQRDTQYLTFTQSEKSDLYKALRN 1219
Query: 512 KGCDNIFTTHEAQGKTFDNV 571
+G N+ T HE QGKTFD+V
Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239
[31][TOP]
>UniRef100_Q9IWB1 Replication protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9IWB1_9VIRU
Length = 1816
Score = 105 bits (261), Expect = 3e-21
Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
Frame = +2
Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
+ + ++LKE + C+ + L +RT DS+LM +A + FDE + HAG+VY
Sbjct: 1041 KEATEDLKEKFAKRLRCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
A + G V+ GD++QIPF++R S ++ KL E +T+RSP D + L K
Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159
Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
Y + V T + LRS+ V P+ S V + + YL TQ+EKA L
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219
Query: 512 KGCDNIFTTHEAQGKTFDNV 571
+G N+ T HE QGKTFD+V
Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239
[32][TOP]
>UniRef100_Q91DN3 Replication protein n=2 Tax=Soil-borne wheat mosaic virus
RepID=Q91DN3_SBWMV
Length = 1816
Score = 105 bits (261), Expect = 3e-21
Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
Frame = +2
Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
+ + ++LKE + C+ + L +RT DS+LM +A + FDE + HAG+VY
Sbjct: 1041 KEATEDLKEKFAKRLRCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
A + G V+ GD++QIPF++R S ++ KL E +T+RSP D + L K
Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159
Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
Y + V T + LRS+ V P+ S V + + YL TQ+EKA L
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219
Query: 512 KGCDNIFTTHEAQGKTFDNV 571
+G N+ T HE QGKTFD+V
Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239
[33][TOP]
>UniRef100_Q9WJD7 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus
RepID=Q9WJD7_9VIRU
Length = 1858
Score = 104 bits (259), Expect = 6e-21
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Frame = +2
Query: 62 LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238
L IRT DS+LM +A + FDE + HAG+VY A + G +VI GD++QIPF+
Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163
Query: 239 SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412
+R S ++ KL + E +T+RSP D + L K + + V T + V+RS++ V
Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223
Query: 413 -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
P+ S V +A YL TQ+EK L KG + T HE QGKTFD+V
Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281
[34][TOP]
>UniRef100_Q91QY9 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus
RepID=Q91QY9_9VIRU
Length = 1858
Score = 104 bits (259), Expect = 6e-21
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Frame = +2
Query: 62 LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238
L IRT DS+LM +A + FDE + HAG+VY A + G +VI GD++QIPF+
Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163
Query: 239 SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412
+R S ++ KL + E +T+RSP D + L K + + V T + V+RS++ V
Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223
Query: 413 -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
P+ S V +A YL TQ+EK L KG + T HE QGKTFD+V
Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281
[35][TOP]
>UniRef100_B3IUH4 p212 n=2 Tax=Soil-borne wheat mosaic virus RepID=B3IUH4_SBWMV
Length = 1858
Score = 104 bits (259), Expect = 6e-21
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
Frame = +2
Query: 62 LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238
L IRT DS+LM +A + FDE + HAG+VY A + G +VI GD++QIPF+
Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163
Query: 239 SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412
+R S ++ KL + E +T+RSP D + L K + + V T + V+RS++ V
Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223
Query: 413 -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
P+ S V +A YL TQ+EK L KG + T HE QGKTFD+V
Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281
[36][TOP]
>UniRef100_Q9QBU0 Polymerase n=2 Tax=Potato mop-top virus RepID=Q9QBU0_9VIRU
Length = 1303
Score = 103 bits (258), Expect = 7e-21
Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 9/197 (4%)
Frame = +2
Query: 8 RSSADELKETIDC---SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
R +A++L+E + T+L +RT DSYL++ + +A L FDE + HAG+VY A
Sbjct: 1040 REAAEDLRERFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCA 1099
Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPAD-ATYCLEKYF 352
VI GD++QIPF++R S R+ KL V K +T+RSP D A+Y +K F
Sbjct: 1100 DDLSARSVICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNF 1159
Query: 353 YKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC 520
Y N ++RS++ V + S S+ + YL Q+EK ++ Q +G
Sbjct: 1160 YGTSVVTSANP-LVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMR-QYLGRGN 1217
Query: 521 DNIFTTHEAQGKTFDNV 571
N+ T HE+QGKT+DNV
Sbjct: 1218 WNVNTVHESQGKTYDNV 1234
[37][TOP]
>UniRef100_Q80A46 RNA-dependent RNA polymerase n=1 Tax=Potato mop-top virus
RepID=Q80A46_9VIRU
Length = 1303
Score = 103 bits (258), Expect = 7e-21
Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 9/197 (4%)
Frame = +2
Query: 8 RSSADELKETIDC---SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
R +A++L+E + T+L +RT DSYL++ + +A L FDE + HAG+VY A
Sbjct: 1040 REAAEDLRERFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCA 1099
Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPAD-ATYCLEKYF 352
VI GD++QIPF++R S R+ KL V K +T+RSP D A+Y +K F
Sbjct: 1100 DDLSARSVICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNF 1159
Query: 353 YKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC 520
Y N ++RS++ V + S S+ + YL Q+EK ++ Q +G
Sbjct: 1160 YGTSVVTSANP-LVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMR-QYLGRGN 1217
Query: 521 DNIFTTHEAQGKTFDNV 571
N+ T HE+QGKT+DNV
Sbjct: 1218 WNVNTVHESQGKTYDNV 1234
[38][TOP]
>UniRef100_Q9JGJ7 145-kDa protein n=2 Tax=Sorghum chlorotic spot virus
RepID=Q9JGJ7_9VIRU
Length = 1277
Score = 100 bits (250), Expect = 6e-20
Identities = 73/181 (40%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
Frame = +2
Query: 59 KLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIP 232
+L+ +RT DSYLM + L FDE + HAG+VY A L G ++I GD++QIP
Sbjct: 1029 ELNRVRTVDSYLMHDCGKEMTCNTLHFDEALMAHAGMVYFCADLLGARKLICQGDSQQIP 1088
Query: 233 FVSRNPSFVFRHHKLT-GKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIE 406
FV+R S R+ L K ++ T+RSP D A Y K +Y R TNS RS+
Sbjct: 1089 FVNRVESITLRYANLVIDKTDKIRHTYRSPIDVACYLTMKGYYGADRITTTNSDG-RSLG 1147
Query: 407 VV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDN 568
VV P+ S V YL TQAEK L KG ++ T HEAQGKTF++
Sbjct: 1148 VVGPRHEKPMTSVYCVPYLAGVQYLTFTQAEKEDLHKALRSKGPVSVSTVHEAQGKTFND 1207
Query: 569 V 571
V
Sbjct: 1208 V 1208
[39][TOP]
>UniRef100_C8KH75 1a protein n=1 Tax=Melandrium yellow fleck virus RepID=C8KH75_9BROM
Length = 948
Score = 100 bits (248), Expect = 1e-19
Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 19/209 (9%)
Frame = +2
Query: 2 SNRSSADELKETI-DCSPLTKL--HYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+NR SAD+++ I +P ++ YIRT DS +M K +R++ DE L H G + A
Sbjct: 696 ANRKSADDVRAAIFPENPNNEIATRYIRTADSAIMHGLP-KCKRVLIDEAGLMHYGQLLA 754
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346
A ++GC EV+ FGDTEQI F SR+ +F +H+ + R+L+ T+R P D ++
Sbjct: 755 VAAISGCDEVVAFGDTEQISFKSRDVTFRMKHNAINYD-SRELVKTTYRCPQDVVDAVKL 813
Query: 347 YFYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
K R K N S V +S+ I+SP + N YL TQ++KA L QT
Sbjct: 814 LKRKCGNRGSKYNDWVSKSTVRKSLYKRSISSPTQINIEVNKFYLTMTQSDKAAL--QTR 871
Query: 509 LKGC--------DNIFTTHEAQGKTFDNV 571
K +NI T HEAQG + DNV
Sbjct: 872 AKDFSLSKDWIENNIKTVHEAQGISVDNV 900
[40][TOP]
>UniRef100_C7U0R4 Putative 204K replicase protein n=2 Tax=Beet soil-borne virus
RepID=C7U0R4_9VIRU
Length = 1778
Score = 98.2 bits (243), Expect = 4e-19
Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
Frame = +2
Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A
Sbjct: 1007 REAAAELRERFKTVRGSTDEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066
Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
+I GD++QIPF++R S + KL T VE++L T+RSP D A + K
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125
Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
FY + N RS+ VV + S S+ + A YL TQ+EK + KG
Sbjct: 1126 FYGTSTVMSANP-TGRSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183
Query: 518 CDNIFTTHEAQGKTFDNV 571
++ T HE+QGKT+D+V
Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201
[41][TOP]
>UniRef100_O56790 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=O56790_9VIRU
Length = 1778
Score = 97.8 bits (242), Expect = 5e-19
Identities = 75/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Frame = +2
Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A
Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKILHFDEALMAHAGMVYFCA 1066
Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
+I GD++QIPF++R S + KL T VE++L T+RSP D A + K
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125
Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
FY + + S RSI VV + S S+ + A YL TQ+EK + KG
Sbjct: 1126 FYWHFHCYERKSNG-RSISVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183
Query: 518 CDNIFTTHEAQGKTFDNV 571
++ T HE+QGKT+D+V
Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201
[42][TOP]
>UniRef100_B6E276 Replicase large subunit n=2 Tax=Hibiscus latent Fort Pierce virus
RepID=B6E276_9VIRU
Length = 1646
Score = 97.4 bits (241), Expect = 7e-19
Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Frame = +2
Query: 38 IDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGD 217
IDC+ +RT DS+LM+ L DE + H G+V L+ C++ +GD
Sbjct: 896 IDCTKPANTSNVRTVDSFLMNPKPFTYDTLWIDEGLMLHTGMVNYCVLLSHCTKCFIYGD 955
Query: 218 TEQIPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSR 388
T+QIPF++R +F + H T E++ IT R P D T+ L + + K PV + S
Sbjct: 956 TQQIPFINRVMNFDYPGHLRTIVVDDTEKRRITSRCPLDVTFYLTQRY---KGPVMSTSS 1012
Query: 389 VLRSIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKT 559
V RS+E + P E L + TQA+K LK KG +++ T HE QG+T
Sbjct: 1013 VTRSVETKFVAGPARFEPRATPLPGKIVTFTQADKETLKK----KGYNDVHTVHEIQGET 1068
Query: 560 FDNV 571
F+ V
Sbjct: 1069 FNEV 1072
[43][TOP]
>UniRef100_C5IXG8 204 kDa protein n=1 Tax=Beet soil-borne virus RepID=C5IXG8_9VIRU
Length = 1778
Score = 97.1 bits (240), Expect = 9e-19
Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Frame = +2
Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A
Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066
Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
+I GD++QIPF++R S + KL T VE++L T+RSP D A + K
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125
Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
FY + + S RS+ VV + S S+ + A YL TQ+EK + KG
Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDIVRYLG-KG 1183
Query: 518 CDNIFTTHEAQGKTFDNV 571
++ T HE+QGKT+D+V
Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201
[44][TOP]
>UniRef100_B4X9D6 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D6_9VIRU
Length = 1778
Score = 97.1 bits (240), Expect = 9e-19
Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Frame = +2
Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A
Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066
Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
+I GD++QIPF++R S + KL T VE++L T+RSP D A + K
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125
Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
FY + + S RS+ VV + S S+ + A YL TQ+EK + KG
Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183
Query: 518 CDNIFTTHEAQGKTFDNV 571
++ T HE+QGKT+D+V
Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201
[45][TOP]
>UniRef100_O90699 Putative uncharacterized protein n=2 Tax=Beet virus Q
RepID=O90699_9VIRU
Length = 1818
Score = 95.5 bits (236), Expect = 3e-18
Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS++M+ +A L FDE + HAG VY A + VI GD++QIPFV R
Sbjct: 1071 VRTVDSFIMNDRFSRANVLHFDEALMAHAGTVYFCADMLSARTVICQGDSQQIPFVPRVE 1130
Query: 251 SFVFRHHKL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV----P 415
++ KL V K +T+RSP D L + Y + + + LRS++ +
Sbjct: 1131 GITLKYAKLKIDNVVEKRLTYRSPLDVAAFLTRKGYYGNSVIMSANETLRSMKTIGPRTG 1190
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ S S+ + N YL TQAEK ++ KG + T HE QGKT++NV
Sbjct: 1191 MTSIYSIPKVANCQYLTFTQAEKEEMEKYLG-KGKWGVNTVHECQGKTYENV 1241
[46][TOP]
>UniRef100_B4X9D8 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D8_9VIRU
Length = 1778
Score = 95.5 bits (236), Expect = 3e-18
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Frame = +2
Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A
Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066
Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
+I GD++QIPF++R S + KL T VE++L T+RSP D A + K
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125
Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
FY + + S RS+ VV + S S+ + A YL TQ+EK + KG
Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183
Query: 518 CDNIFTTHEAQGKTFDNV 571
++ T H++QGKT+D+V
Sbjct: 1184 QWSVNTVHKSQGKTYDDV 1201
[47][TOP]
>UniRef100_Q9DUT3 Genomic RNA1 for 1a protein, (ORF1) n=1 Tax=Pelargonium zonate spot
virus RepID=Q9DUT3_PZSV
Length = 962
Score = 93.6 bits (231), Expect = 1e-17
Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
+ +SS D LK +P + +RT DS LM A K +R++FDE L H G + A T
Sbjct: 721 NKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILT 780
Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYK 358
++G E+IGFGD+EQI FVSR+ F ++HKL+ ++++ T+R P D C++ K
Sbjct: 781 ISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRCPKDVVECVKIMARK 840
Query: 359 -NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH---- 508
R K T S V +S+ ++S + YL TQA+KA L ++
Sbjct: 841 VGARGSKYNNWFTTSAVRKSLGYHKVSSINESPLRPDVHYLTMTQADKASLLSKARETRF 900
Query: 509 ---LKGCDNIF-TTHEAQG 553
+ D + TTHE+QG
Sbjct: 901 RPSVSTIDEVIKTTHESQG 919
[48][TOP]
>UniRef100_Q8JW08 1a protein n=1 Tax=Spring beauty latent virus RepID=Q8JW08_9BROM
Length = 958
Score = 92.8 bits (229), Expect = 2e-17
Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 17/207 (8%)
Frame = +2
Query: 2 SNRSSADELKETI--DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175
+NR SA++++E + D + +RT DS +M K RL+ DE L H G + A
Sbjct: 706 ANRKSAEDVREALFGDVNSKIANEVVRTADSAIMHGLP-KCSRLLIDEAGLLHYGQLLAV 764
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLEK 346
A L GC V+ FGDTEQI F SR+ +F FRH + + +R+ + T+R P D ++K
Sbjct: 765 AALCGCETVLAFGDTEQISFKSRDVTFKFRHAVI--EYDRRDVVTETFRCPEDVISAIKK 822
Query: 347 YFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
K R K T S V S+ + ++S V + YL TQA+KA L ++
Sbjct: 823 LKRKCGNRDSKYLSWRTQSSVKTSLGMRSVSSVTQVNIEKHKFYLTMTQADKAALVSRAK 882
Query: 509 LKGCD------NIFTTHEAQGKTFDNV 571
D +I T HEAQG + D+V
Sbjct: 883 DFPVDKTWVDKHIKTVHEAQGVSVDHV 909
[49][TOP]
>UniRef100_Q9YPH5 209kDa protein n=2 Tax=Broad bean necrosis virus RepID=Q9YPH5_9VIRU
Length = 1821
Score = 91.3 bits (225), Expect = 5e-17
Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 9/176 (5%)
Frame = +2
Query: 71 IRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DSYL++ + ++A + FDE + HAG+VY A + + GD++QIPF++R
Sbjct: 1063 VRTVDSYLLNDFGNKLRADTVHFDEALMAHAGMVYFIAMMCSAKRIKCQGDSKQIPFINR 1122
Query: 245 NPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV--- 412
S + KL + K +T+RSP D Y L K + + + + +LRS++ V
Sbjct: 1123 VESIKLEYAKLDIHETIAKRLTYRSPLDVAYYLTKKGFYGLDFITSANPLLRSMKTVGPR 1182
Query: 413 ---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
P++S + + A YL TQ EK +K Q G + T HEAQGKTF++V
Sbjct: 1183 SSTPMSSIYVIPKTKGASYLTFTQTEKDEMK-QYLGSGDWTVNTVHEAQGKTFNDV 1237
[50][TOP]
>UniRef100_C6F418 ORF1a n=1 Tax=Citrus tristeza virus RepID=C6F418_9CLOS
Length = 3115
Score = 91.3 bits (225), Expect = 5e-17
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D LTK H I+T DSYLM+ +K L DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLTK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 2791
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2792 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943
[51][TOP]
>UniRef100_Q8JVK7 Replicase large subunit n=2 Tax=Paprika mild mottle virus
RepID=Q8JVK7_PMMV
Length = 1616
Score = 90.5 bits (223), Expect = 8e-17
Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKA---QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
++T DS+LM+ +RL DE + H G VY TL+ C E FGDT+QIP+++
Sbjct: 881 VKTVDSFLMNLGKGPRNHFKRLFIDEGLMLHPGCVYFLVTLSLCDEAFVFGDTQQIPYIN 940
Query: 242 RNPSFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
R +F F H + + E++ T R P D T+ L + + + V T S RS+ V
Sbjct: 941 RVQNFPFPKHFSKLIVDETEKRRTTLRCPVDVTHFLNQRY---EGAVTTTSTTTRSVGVD 997
Query: 413 PINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+N ++ T L + TQ++K L + +G +N+ T HE QG+T+D+V
Sbjct: 998 VVNGAATMNPVTRPLKGKIITFTQSDKITLAS----RGYENVNTVHEIQGETYDDV 1049
[52][TOP]
>UniRef100_Q05983 Non-structural polyprotein protein n=1 Tax=Raspberry bushy dwarf
virus RepID=Q05983_RBDV
Length = 1694
Score = 90.5 bits (223), Expect = 8e-17
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
Frame = +2
Query: 68 YIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+IRT DSYL+S S L DE L H G++ A ++G +V FGD+EQIPF +R
Sbjct: 901 FIRTVDSYLLSPSVTGSCDELFIDEYGLSHPGILLLAIHISGIRKVTLFGDSEQIPFCNR 960
Query: 245 NPSFVFRHHK-----LTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEV 409
F +++ L E + T+R P D T L+K YK K P+KT S V SI +
Sbjct: 961 LADFPLKYNSVEDVGLNFDREIRSTTYRCPQDITLSLQK-MYKTK-PIKTVSTVESSITI 1018
Query: 410 VPINS----PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVY 574
PI S P+ + LY+C T+ ++++LK + + + + T H AQG ++ NV
Sbjct: 1019 KPIKSEFEIPLPNAFDGPVLYICMTKHDESLLKLRWAKENISSEVRTVHAAQGLSYKNVV 1078
Query: 575 F 577
+
Sbjct: 1079 Y 1079
[53][TOP]
>UniRef100_Q9IFX0 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9IFX0_9CLOS
Length = 3115
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943
[54][TOP]
>UniRef100_Q9DTG5 349-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=Q9DTG5_9CLOS
Length = 3132
Score = 90.1 bits (222), Expect = 1e-16
Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 24/214 (11%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 2750 ANKNSQAEISQRISKELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2808
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWR 313
HAG + A C V+ FGD+ QI ++ RN V H + +E + +++R
Sbjct: 2809 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRVYGEVSYR 2868
Query: 314 SPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVL 493
P D L K++ ++ T S S+ + IN V +++A Y+ +TQAEK L
Sbjct: 2869 CPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL 2928
Query: 494 KAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
Q HL K + T HE QG+T+ V
Sbjct: 2929 --QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2960
[55][TOP]
>UniRef100_Q9DJR0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR0_9CLOS
Length = 371
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
[56][TOP]
>UniRef100_Q9DJQ6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ6_9CLOS
Length = 357
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 18 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 76
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 77 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 133
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 134 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 191
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 192 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 228
[57][TOP]
>UniRef100_Q9DJQ2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ2_9CLOS
Length = 257
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 18 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 76
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 77 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 133
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 134 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 191
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 192 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 228
[58][TOP]
>UniRef100_Q9DJP5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP5_9CLOS
Length = 319
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 20 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 78
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 79 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 135
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 136 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 193
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 194 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 230
[59][TOP]
>UniRef100_Q9DJP3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP3_9CLOS
Length = 368
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 22 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 80
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 81 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 137
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 195
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 232
[60][TOP]
>UniRef100_Q9DJN7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN7_9CLOS
Length = 371
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLDVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
[61][TOP]
>UniRef100_Q9DJN1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJN1_9CLOS
Length = 371
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
[62][TOP]
>UniRef100_Q9DJM1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM1_9CLOS
Length = 371
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSAGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[63][TOP]
>UniRef100_Q9DJL6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL6_9CLOS
Length = 371
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPRDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[64][TOP]
>UniRef100_B5THB7 p1a n=1 Tax=Citrus tristeza virus RepID=B5THB7_9CLOS
Length = 3115
Score = 90.1 bits (222), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943
[65][TOP]
>UniRef100_Q9DJQ5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ5_9CLOS
Length = 368
Score = 89.7 bits (221), Expect = 1e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[66][TOP]
>UniRef100_Q9DJM8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM8_9CLOS
Length = 371
Score = 89.7 bits (221), Expect = 1e-16
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKVLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T+S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
[67][TOP]
>UniRef100_Q9DJM7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM7_9CLOS
Length = 371
Score = 89.7 bits (221), Expect = 1e-16
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T+S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
[68][TOP]
>UniRef100_Q9DJM6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM6_9CLOS
Length = 262
Score = 89.7 bits (221), Expect = 1e-16
Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T+S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
[69][TOP]
>UniRef100_Q9DJN8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN8_9CLOS
Length = 367
Score = 89.4 bits (220), Expect = 2e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[70][TOP]
>UniRef100_Q9DJN6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN6_9CLOS
Length = 371
Score = 89.4 bits (220), Expect = 2e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[71][TOP]
>UniRef100_Q9DJN4 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJN4_9CLOS
Length = 370
Score = 89.4 bits (220), Expect = 2e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 22 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 80
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 81 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 137
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 195
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 232
[72][TOP]
>UniRef100_Q9DJN3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN3_9CLOS
Length = 371
Score = 89.4 bits (220), Expect = 2e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[73][TOP]
>UniRef100_Q9DJM9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM9_9CLOS
Length = 371
Score = 89.4 bits (220), Expect = 2e-16
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[74][TOP]
>UniRef100_Q9DJM3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM3_9CLOS
Length = 371
Score = 89.4 bits (220), Expect = 2e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[75][TOP]
>UniRef100_Q9DJM0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM0_9CLOS
Length = 371
Score = 89.4 bits (220), Expect = 2e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[76][TOP]
>UniRef100_Q2LK62 P349 protein n=1 Tax=Citrus tristeza virus RepID=Q2LK62_9CLOS
Length = 3115
Score = 89.4 bits (220), Expect = 2e-16
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943
[77][TOP]
>UniRef100_O10467 347-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=O10467_9CLOS
Length = 3115
Score = 89.4 bits (220), Expect = 2e-16
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943
[78][TOP]
>UniRef100_B5THA5 p1a n=1 Tax=Citrus tristeza virus RepID=B5THA5_9CLOS
Length = 3115
Score = 89.4 bits (220), Expect = 2e-16
Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943
[79][TOP]
>UniRef100_Q9DJN0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN0_9CLOS
Length = 371
Score = 89.0 bits (219), Expect = 2e-16
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +KA L DECF+
Sbjct: 23 ANKNSQAEISRRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKADLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDMDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYNVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[80][TOP]
>UniRef100_Q9DJP7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP7_9CLOS
Length = 343
Score = 88.6 bits (218), Expect = 3e-16
Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 24/205 (11%)
Frame = +2
Query: 29 KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAG 190
+E +D L K H ++T DSYLM+ +K L DECF+ HAG + A
Sbjct: 9 RELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTS 67
Query: 191 CSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCL 340
C V+ FGD+ QI ++ RN +F+ H++ G+V ++R P D L
Sbjct: 68 CKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWL 122
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--- 511
K++ ++ T S S+ + IN V +++A Y+ +TQAEK L Q HL
Sbjct: 123 SKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRL 180
Query: 512 -----KGCDNIFTTHEAQGKTFDNV 571
K + T HE QG+T+ V
Sbjct: 181 TVGRTKAVPIVNTVHEVQGETYKKV 205
[81][TOP]
>UniRef100_Q9DJR6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR6_9CLOS
Length = 371
Score = 88.2 bits (217), Expect = 4e-16
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG T+ V
Sbjct: 197 EKNDL--QKHLGRLTVGRTKAVPIVNTVHEVQGDTYKKV 233
[82][TOP]
>UniRef100_Q9DJM5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM5_9CLOS
Length = 371
Score = 88.2 bits (217), Expect = 4e-16
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 58 TVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFG 117
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L K++ ++ T S S+
Sbjct: 118 VSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVS 172
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 173 IEIINGCDDVPYDSSAKYIAYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETY 230
Query: 563 DNV 571
V
Sbjct: 231 KKV 233
[83][TOP]
>UniRef100_Q5G7G7 Polyprotein 1a n=2 Tax=Mint virus 1 RepID=Q5G7G7_9CLOS
Length = 2511
Score = 88.2 bits (217), Expect = 4e-16
Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+ T DSYLM+ L DECF+ HAG V C I FGD++QI ++ R+
Sbjct: 2192 VMTMDSYLMNRCGETCDLLFMDECFMVHAGQVLGIINKTMCKVAILFGDSKQIHYIERDE 2251
Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
+H + +E I++R P D L K + + + T+S +S+ VV
Sbjct: 2252 FVSTVYHDIDSFIEPFCRMYGEISYRCPWDVCEWLSKLYKRQIKSNNTSSIGKQSVSVVN 2311
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNVY 574
I S V + YL +TQ+EKA L+ + + ++ T HEAQG+TF NVY
Sbjct: 2312 IESVEDVPFVQSIKYLTYTQSEKAELRRKFEKFSSEPSVNTVHEAQGETFKNVY 2365
[84][TOP]
>UniRef100_P27752 Methyltransferase n=1 Tax=Cowpea chlorotic mottle virus
RepID=ORF1A_CCMV
Length = 958
Score = 88.2 bits (217), Expect = 4e-16
Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
Frame = +2
Query: 2 SNRSSADELKETI-DCSPLTKLHY--IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+N+ SA++++E + +P +++ + IRT DS LM + +RL+ DE L H G + A
Sbjct: 706 ANKKSAEDVREALFPHNPSSEIAFKVIRTADSALMHGLP-RCKRLLVDEAGLLHYGQLLA 764
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346
A L C V+ FGDTEQI F SR+ +F ++ L R ++ TWR P D ++
Sbjct: 765 VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823
Query: 347 YFYKNKRPV-----KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT-H 508
R K++S+V RSI I SP+ V + YL TQA+KA L ++
Sbjct: 824 LKRGGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAKD 883
Query: 509 LKGCD------NIFTTHEAQGKTFDN 568
D +I T HEAQG + D+
Sbjct: 884 FPELDKAWIEKHIKTVHEAQGVSVDH 909
[85][TOP]
>UniRef100_Q9WJD8 (PEBV) genomic RNA1 for 141K, 201K, 30K and 12K proteins n=2 Tax=Pea
early-browning virus RepID=Q9WJD8_PEBV
Length = 1766
Score = 87.8 bits (216), Expect = 5e-16
Identities = 67/175 (38%), Positives = 88/175 (50%), Gaps = 8/175 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKA--QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
++T DS+LM S L FDE + HAG+V+ A +A +VI GD +QI + R
Sbjct: 1012 VKTVDSFLMHCSDGNCVGDLLHFDEALMAHAGMVFFCAQIAKAKKVICQGDQKQIAYKPR 1071
Query: 245 NPSFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
R L G+ VE K +++R P D L++ FY K V T + VLRS++V
Sbjct: 1072 VSQLTLRFTSLIGRFDEVEEKRMSYRCPVDVALTLDR-FYTGK--VVTKNSVLRSMDVKR 1128
Query: 416 INSPVSVERNTNALYLCHTQAEK---AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
I S VE YL Q+EK A L Q +K N T HEAQGKTF V
Sbjct: 1129 IGSKEQVEMEHGIQYLTFLQSEKKDIANLLCQRKVKSFVN--TVHEAQGKTFKKV 1181
[86][TOP]
>UniRef100_Q9DJS0 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJS0_9CLOS
Length = 371
Score = 87.8 bits (216), Expect = 5e-16
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANIGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
[87][TOP]
>UniRef100_Q9DJR1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR1_9CLOS
Length = 371
Score = 87.8 bits (216), Expect = 5e-16
Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 24/214 (11%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWR 313
HAG + A C V+ FGD+ QI ++ RN V H + E + +++R
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDALYEPQHRIYGEVSYR 141
Query: 314 SPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVL 493
P D L K++ ++ T S S+ + IN V +++A Y+ +TQAEK L
Sbjct: 142 CPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQAEKNEL 201
Query: 494 KAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
Q HL K + T HE QG+T+ V
Sbjct: 202 --QKHLGRLTVGRTKPVPVVNTVHEVQGETYKKV 233
[88][TOP]
>UniRef100_Q9DJM4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM4_9CLOS
Length = 371
Score = 87.8 bits (216), Expect = 5e-16
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 58 TVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFG 117
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L K++ ++ T S S+
Sbjct: 118 VSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVS 172
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 173 IEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETY 230
Query: 563 DNV 571
V
Sbjct: 231 KKV 233
[89][TOP]
>UniRef100_Q9DJM2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM2_9CLOS
Length = 370
Score = 87.8 bits (216), Expect = 5e-16
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 22 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 80
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 81 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 137
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S+ + IN V +++A Y+ +TQA
Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGGVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 195
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 232
[90][TOP]
>UniRef100_Q8BEM6 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM6_CCMV
Length = 959
Score = 87.8 bits (216), Expect = 5e-16
Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
Frame = +2
Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+N+ SA++++E + + S L IRT DS LM + +RL+ DE L H G + A
Sbjct: 706 ANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLP-QCKRLLVDEAGLLHYGQLLA 764
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346
A L C V+ FGDTEQI F SR+ +F ++ L R ++ TWR P D ++
Sbjct: 765 VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823
Query: 347 YFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT- 505
K K++S+V RSI I SP+ V + YL TQA+KA L ++
Sbjct: 824 LKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAK 883
Query: 506 HLKGCD------NIFTTHEAQGKTFDN 568
D +I T HEAQG + D+
Sbjct: 884 DFPELDKAWIEKHIKTVHEAQGVSVDH 910
[91][TOP]
>UniRef100_Q8BEM3 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM3_CCMV
Length = 959
Score = 87.8 bits (216), Expect = 5e-16
Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
Frame = +2
Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+N+ SA++++E + + S L IRT DS LM + +RL+ DE L H G + A
Sbjct: 706 ANKKSAEDVREALFPDNPSSEIALKVIRTADSALMHGLP-QCKRLLVDEAGLLHYGQLLA 764
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346
A L C V+ FGDTEQI F SR+ +F ++ L R ++ TWR P D ++
Sbjct: 765 VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823
Query: 347 YFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT- 505
K K++S+V RSI I SP+ V + YL TQA+KA L ++
Sbjct: 824 LKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAK 883
Query: 506 HLKGCD------NIFTTHEAQGKTFDN 568
D +I T HEAQG + D+
Sbjct: 884 DFPELDKAWIEKHIKTVHEAQGVSVDH 910
[92][TOP]
>UniRef100_Q9DJQ8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ8_9CLOS
Length = 371
Score = 87.4 bits (215), Expect = 7e-16
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L ECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVGECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
[93][TOP]
>UniRef100_Q9DJP8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP8_9CLOS
Length = 369
Score = 87.4 bits (215), Expect = 7e-16
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 21 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 79
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 80 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 136
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + N V +++A Y+ +TQA
Sbjct: 137 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVTNGCDDVPYDSSAKYIVYTQA 194
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG T+ V
Sbjct: 195 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGDTYKKV 231
[94][TOP]
>UniRef100_Q9WID7 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9WID7_9CLOS
Length = 3115
Score = 87.0 bits (214), Expect = 9e-16
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H ++T DSYLM+ + L DECF+
Sbjct: 2733 ANKNSQAEISQRISREFMDRKMLAK-HVVKTAGRVFTVDSYLMNHLRLTTDLLFVDECFM 2791
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATTNTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943
[95][TOP]
>UniRef100_Q9DJL9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL9_9CLOS
Length = 371
Score = 86.3 bits (212), Expect = 2e-15
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE Q +T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQEETYKKV 233
[96][TOP]
>UniRef100_Q65661 1a protein n=1 Tax=Brome mosaic virus RepID=Q65661_BMV
Length = 961
Score = 85.9 bits (211), Expect = 2e-15
Identities = 73/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Frame = +2
Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+NR SA++++ + + L +RT DS +M RL+ DE L H G +
Sbjct: 709 ANRKSAEDVRMALFPDTFNSKVALDIVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343
A L+ CS+V+ FGDTEQI F SR+ F H L K +R+ + T+R P D +
Sbjct: 768 VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRDVVHKTYRCPQDVIAAVN 825
Query: 344 KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505
K R K + S+V RS+ I S + V + N YL TQA+KA L QT
Sbjct: 826 LLKRKCGNRDTKYQSWTSESKVSRSLAKRRITSVLQVTIDPNRTYLTMTQADKAAL--QT 883
Query: 506 HLKGC--------DNIFTTHEAQGKTFDNV 571
K +I T HEAQG + DNV
Sbjct: 884 RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913
[97][TOP]
>UniRef100_A0SL67 1a n=1 Tax=Brome mosaic virus RepID=A0SL67_BMV
Length = 961
Score = 85.9 bits (211), Expect = 2e-15
Identities = 73/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Frame = +2
Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+NR SA++++ + + L +RT DS +M RL+ DE L H G +
Sbjct: 709 ANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343
A L+ CS+V+ FGDTEQI F SR+ F H L K +R+ + T+R P D +
Sbjct: 768 VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRDVVHKTYRCPQDVIAAVN 825
Query: 344 KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505
K R K + S+V RS+ I S + V + N YL TQA+KA L QT
Sbjct: 826 LLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSVLQVTIDPNRTYLTMTQADKAAL--QT 883
Query: 506 HLKGC--------DNIFTTHEAQGKTFDNV 571
K +I T HEAQG + DNV
Sbjct: 884 RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913
[98][TOP]
>UniRef100_Q9WJQ9 Putative uncharacterized protein (Fragment) n=1 Tax=Tobacco rattle
virus RepID=Q9WJQ9_9VIRU
Length = 400
Score = 85.5 bits (210), Expect = 3e-15
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
+ R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY
Sbjct: 141 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 200
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A +AG I GD QI F R R L GK V K T+RSPAD L
Sbjct: 201 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 260
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K
Sbjct: 261 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 317
Query: 518 CDNIFTTHEAQGKTFDNV 571
+ T HE+QG+TF +V
Sbjct: 318 AAKVSTVHESQGETFKDV 335
[99][TOP]
>UniRef100_Q9J942 194 kDa protein n=2 Tax=Tobacco rattle virus RepID=Q9J942_9VIRU
Length = 1707
Score = 85.5 bits (210), Expect = 3e-15
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
+ R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY
Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A +AG I GD QI F R R L GK V K T+RSPAD L
Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104
Query: 518 CDNIFTTHEAQGKTFDNV 571
+ T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122
[100][TOP]
>UniRef100_Q9DL34 RNA-dependent RNA polymerase n=2 Tax=Tobacco rattle virus
RepID=Q9DL34_9VIRU
Length = 1707
Score = 85.5 bits (210), Expect = 3e-15
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
+ R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY
Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A +AG I GD QI F R R L GK V K T+RSPAD L
Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104
Query: 518 CDNIFTTHEAQGKTFDNV 571
+ T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122
[101][TOP]
>UniRef100_Q8JU32 Putative replicase n=2 Tax=Tobacco rattle virus RepID=Q8JU32_9VIRU
Length = 1707
Score = 85.5 bits (210), Expect = 3e-15
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
+ R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY
Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A +AG I GD QI F R R L GK V K T+RSPAD L
Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104
Query: 518 CDNIFTTHEAQGKTFDNV 571
+ T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122
[102][TOP]
>UniRef100_O56250 RNA polymerase n=1 Tax=Tobacco rattle virus RepID=O56250_9VIRU
Length = 1707
Score = 85.5 bits (210), Expect = 3e-15
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
+ R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY
Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A +AG I GD QI F R R L GK V K T+RSPAD L
Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVVAVL 1047
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104
Query: 518 CDNIFTTHEAQGKTFDNV 571
+ T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122
[103][TOP]
>UniRef100_P05080 134 kDa protein n=2 Tax=Tobacco rattle virus RepID=194K_TRVSY
Length = 1707
Score = 85.5 bits (210), Expect = 3e-15
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
+ R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY
Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A +AG I GD QI F R R L GK V K T+RSPAD L
Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104
Query: 518 CDNIFTTHEAQGKTFDNV 571
+ T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122
[104][TOP]
>UniRef100_Q70BW7 Replicase n=2 Tax=Tobacco rattle virus RepID=Q70BW7_9VIRU
Length = 1707
Score = 85.1 bits (209), Expect = 4e-15
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
+ R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY
Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A +AG I GD QI F R R L GK V K T+RSPAD L
Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVNLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELINLLALRKV 1104
Query: 518 CDNIFTTHEAQGKTFDNV 571
+ T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122
[105][TOP]
>UniRef100_Q9DJQ1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJQ1_9CLOS
Length = 370
Score = 84.7 bits (208), Expect = 5e-15
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+
Sbjct: 22 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 80
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 81 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 137
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ S S+ + IN V ++A Y+ +TQA
Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 195
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 196 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 232
[106][TOP]
>UniRef100_Q1XF44 Replicase large subunit n=2 Tax=Streptocarpus flower break virus
RepID=Q1XF44_9VIRU
Length = 1606
Score = 84.7 bits (208), Expect = 5e-15
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+L+ + +RL DE + H G V A + C EV+ +GDT QIPF++R
Sbjct: 869 VRTVDSFLIHMKGTQVKRLFIDEGLMLHTGCVNFLALFSHCEEVLVYGDTHQIPFINRVA 928
Query: 251 SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H VE++ +T R PAD T+ L Y K V S +LRS+E +
Sbjct: 929 NFPYPSHFAQLQYDSVEKRRVTLRCPADVTHHLNSQ-YDGK--VMCTSSILRSVECEVVR 985
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDNV 571
+ T L + TQ++K L+ + + + ++ T HE QG+T+++V
Sbjct: 986 GKAVLNPKTKPLSGKIITFTQSDKLELQNKGYGEVDVLDVNTVHEIQGETYEHV 1039
[107][TOP]
>UniRef100_B8YDL1 p349 protein n=1 Tax=Citrus tristeza virus RepID=B8YDL1_9CLOS
Length = 3113
Score = 84.7 bits (208), Expect = 5e-15
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+
Sbjct: 2731 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 2789
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 2846
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ S S+ + IN V ++A Y+ +TQA
Sbjct: 2847 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 2904
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2905 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 2941
[108][TOP]
>UniRef100_B8PRP6 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=B8PRP6_9CLOS
Length = 3113
Score = 84.7 bits (208), Expect = 5e-15
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+
Sbjct: 2731 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 2789
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 2846
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ S S+ + IN V ++A Y+ +TQA
Sbjct: 2847 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 2904
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2905 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 2941
[109][TOP]
>UniRef100_A3QVG6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=A3QVG6_TMGMV
Length = 1609
Score = 84.7 bits (208), Expect = 5e-15
Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 6/173 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +RL DE + H G V ++GC+ +GDT+QIPF++R
Sbjct: 880 VRTVDSFLMHPKPRTHKRLFIDEGLMLHTGCVNFLVLISGCNIAYIYGDTQQIPFINRVQ 939
Query: 251 SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H KL +VE + T R P D + L+ K + V T S V RS+ I
Sbjct: 940 NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIG 996
Query: 422 SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
SV + + TQA+K L+ KG N+ T HE QG+TF++V
Sbjct: 997 GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045
[110][TOP]
>UniRef100_Q00020 Methyltransferase n=1 Tax=Broad bean mottle virus RepID=ORF1A_BBMV
Length = 966
Score = 84.7 bits (208), Expect = 5e-15
Identities = 72/206 (34%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Frame = +2
Query: 2 SNRSSADELKETI--DCSPL-TKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+NR SA+++++ I D S L +RT DS +M + RL+ DE L H G + A
Sbjct: 714 ANRKSAEDVRKAIFGDASDSEVALKVVRTADSAIMHGLP-ECHRLLVDEAGLLHYGQLLA 772
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349
A L CSEV+ FGDTEQI F SR+ +F ++ + K + T+R P D ++
Sbjct: 773 VADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKRDIVSKTFRCPQDVVSAVKIL 832
Query: 350 FYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
K R K N S+V +S+ I S V + YL T+A+KA L ++
Sbjct: 833 KRKCANRSSKYNGWVSSSKVEKSLSKSRIVSINQVSMEKHKFYLTMTEADKAALCSRAKD 892
Query: 512 KGCD------NIFTTHEAQGKTFDNV 571
G D N+ T HEAQGK D+V
Sbjct: 893 VGLDKTWVESNMETVHEAQGKAVDHV 918
[111][TOP]
>UniRef100_Q8V703 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=Q8V703_TMGMV
Length = 1609
Score = 84.3 bits (207), Expect = 6e-15
Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +RL DE + H G V ++GC +GDT+QIPF++R
Sbjct: 880 VRTVDSFLMHPKPRTHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939
Query: 251 SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H KL +VE + T R P D + L+ K + V T S V RS+ I
Sbjct: 940 NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIG 996
Query: 422 SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
SV + + TQA+K L+ KG N+ T HE QG+TF++V
Sbjct: 997 GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045
[112][TOP]
>UniRef100_Q50L56 1a protein n=1 Tax=Cassia yellow blotch virus RepID=Q50L56_9BROM
Length = 955
Score = 84.3 bits (207), Expect = 6e-15
Identities = 68/209 (32%), Positives = 101/209 (48%), Gaps = 19/209 (9%)
Frame = +2
Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+N+ SA +++E I D +IRT DS LM QRL+ DE L H G V A
Sbjct: 701 ANKKSASDVREAIFPEDPEGEIASKFIRTADSALMHGLP-SCQRLLIDEAGLLHFGQVLA 759
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349
A + +EV+ FGD+EQI F SR+ +F FRH K+ + + +T+R P D + K
Sbjct: 760 VAAICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDVVTVTYRCPQDVVAAVVKM 819
Query: 350 FYKNKRPVK-------TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
+ + + + S+V +S+ PI+S + + Y TQ+ KA L T
Sbjct: 820 KRRTGKLRESKYSSWISRSKVEKSLSARPISSLNQIVIEPHKFYQTMTQSAKAAL--MTR 877
Query: 509 LKGCD--------NIFTTHEAQGKTFDNV 571
K NI T HE+QG + D+V
Sbjct: 878 AKDFQLPKSWIEANIKTAHESQGISVDHV 906
[113][TOP]
>UniRef100_P03588 Methyltransferase n=1 Tax=Brome mosaic virus RepID=ORF1A_BMV
Length = 961
Score = 84.3 bits (207), Expect = 6e-15
Identities = 72/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
Frame = +2
Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
+NR SA++++ + + L +RT DS +M RL+ DE L H G +
Sbjct: 709 ANRKSAEDVRMALFPDTYNSKVALDVVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343
A L+ CS+V+ FGDTEQI F SR+ F H L + +R+ + T+R P D +
Sbjct: 768 VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--QYDRRDVVHKTYRCPQDVIAAVN 825
Query: 344 KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505
K R K + S+V RS+ I S + V + N YL TQA+KA L QT
Sbjct: 826 LLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQVTIDPNRTYLTMTQADKAAL--QT 883
Query: 506 HLKGC--------DNIFTTHEAQGKTFDNV 571
K +I T HEAQG + DNV
Sbjct: 884 RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913
[114][TOP]
>UniRef100_Q9DJT4 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT4_9CLOS
Length = 371
Score = 84.0 bits (206), Expect = 8e-15
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD+EQI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSEQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[115][TOP]
>UniRef100_Q9DJS5 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJS5_9CLOS
Length = 371
Score = 84.0 bits (206), Expect = 8e-15
Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN SF+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K + ++ S S+ + IN V +A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 233
[116][TOP]
>UniRef100_Q9DJL4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL4_9CLOS
Length = 371
Score = 84.0 bits (206), Expect = 8e-15
Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K L DECF+
Sbjct: 23 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN SF+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K + ++ S S+ + IN V +A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 233
[117][TOP]
>UniRef100_D0EAN1 348 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAN1_9CLOS
Length = 3113
Score = 84.0 bits (206), Expect = 8e-15
Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K L DECF+
Sbjct: 2731 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 2789
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN SF+ H++ G+V
Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 2846
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K + ++ S S+ + IN V +A Y+ +TQA
Sbjct: 2847 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 2904
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 2905 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 2941
[118][TOP]
>UniRef100_Q9DJS1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS1_9CLOS
Length = 371
Score = 83.6 bits (205), Expect = 1e-14
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+
Sbjct: 23 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ + S S+ + IN V ++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPXHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 233
[119][TOP]
>UniRef100_Q9DJR8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR8_9CLOS
Length = 371
Score = 83.6 bits (205), Expect = 1e-14
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+
Sbjct: 23 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 81
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V
Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 138
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D L K++ ++ S S+ + IN V ++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 196
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK + Q HL K + T HE QG+T+ V
Sbjct: 197 EKN--EFQKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 233
[120][TOP]
>UniRef100_Q84918 195K protein n=2 Tax=Pepper ringspot virus RepID=Q84918_9VIRU
Length = 1698
Score = 83.6 bits (205), Expect = 1e-14
Identities = 61/173 (35%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKA--QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT D++LM S + + L FDE + HAG+V+ A LA V+ GD +QI + R
Sbjct: 945 VRTVDAFLMHCSNGECIGETLHFDEALMAHAGMVFFCAQLAKAKLVVCQGDQKQIAYKPR 1004
Query: 245 NPSFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
+ L G+ VE K +T+R P D L++ FY K V T + VLRS+
Sbjct: 1005 VAQVNLKFLSLVGRFDEVEEKRLTYRCPIDVALSLDR-FYTGK--VVTKNNVLRSMTTKR 1061
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNV 571
I+S V YL Q+EK + L+ + + T HEAQGKTF V
Sbjct: 1062 ISSKEQVTMEKGVQYLTFLQSEKKEIATMLALRKIEAAVNTVHEAQGKTFKKV 1114
[121][TOP]
>UniRef100_Q9DJS4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS4_9CLOS
Length = 366
Score = 83.2 bits (204), Expect = 1e-14
Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
Frame = +2
Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
+N++S E+ KE +D + K H I+T DSYLM+ +K L DECF+
Sbjct: 20 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 78
Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
HAG + A C V+ FGD+ QI ++ RN SF+ H++ G+V
Sbjct: 79 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 135
Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
++R P D + K + ++ S S+ + IN V +A Y+ +TQA
Sbjct: 136 --SYRCPWDICEWMSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 193
Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
EK L Q HL K + T HE QG+T+ V
Sbjct: 194 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 230
[122][TOP]
>UniRef100_Q9DJU2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJU2_9CLOS
Length = 371
Score = 82.8 bits (203), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[123][TOP]
>UniRef100_Q9DJT5 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT5_9CLOS
Length = 371
Score = 82.8 bits (203), Expect = 2e-14
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ V IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSVEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[124][TOP]
>UniRef100_Q9DJR4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR4_9CLOS
Length = 371
Score = 82.8 bits (203), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[125][TOP]
>UniRef100_Q9DJR3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR3_9CLOS
Length = 371
Score = 82.8 bits (203), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICKWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[126][TOP]
>UniRef100_Q5K6D3 Replicase large subunit n=2 Tax=Hibiscus latent Singapore virus
RepID=Q5K6D3_9VIRU
Length = 1638
Score = 82.8 bits (203), Expect = 2e-14
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM+ + + L DE + H G + L+ C + FGDT+QIPF++R
Sbjct: 902 VRTVDSFLMNPKPFEYKVLWIDEGLMLHTGAISFCVALSHCEQCYVFGDTQQIPFINRVM 961
Query: 251 SFVF---RHHKLTGKVERKLITWRSPADAT-YCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418
+F + +T VE++ IT R P D T Y ++Y K PV + + V RS++ +
Sbjct: 962 NFDYPKTLQTLVTDSVEKRRITSRCPLDVTCYLAQRY----KGPVVSTNNVERSLDTKLV 1017
Query: 419 NSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
E L + TQA+K LK +G ++ T HE QG+T+ V
Sbjct: 1018 AGAARFEPQLTPLPGKVITFTQADKETLKK----RGYQDVHTVHEVQGETYTEV 1067
[127][TOP]
>UniRef100_A4LAL6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=A4LAL6_TMGMV
Length = 1609
Score = 82.8 bits (203), Expect = 2e-14
Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 6/173 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +RL DE + H G V ++GC +GDT+QIPF++R
Sbjct: 880 VRTVDSFLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939
Query: 251 SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H KL +VE T R P D + L+ K + V T S V RS+ I
Sbjct: 940 NFPYPKHFEKLQVDEVEMGRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIG 996
Query: 422 SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
SV + + TQA+K L+ KG N+ T HE QG+TF++V
Sbjct: 997 GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045
[128][TOP]
>UniRef100_P18339 Replicase small subunit n=1 Tax=Tobacco mild green mosaic virus
RepID=RDRP_TMGMV
Length = 1609
Score = 82.8 bits (203), Expect = 2e-14
Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 6/173 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS LM +RL DE + H G V ++GC +GDT+QIPF++R
Sbjct: 880 VRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939
Query: 251 SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H KL +VE + T R P D + L+ K + V T S V RS+ I
Sbjct: 940 NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIG 996
Query: 422 SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
SV + + TQA+K L+ KG N+ T HE QG+TF++V
Sbjct: 997 GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045
[129][TOP]
>UniRef100_UPI0000164AC8 401-kDa viral polyprotein n=2 Tax=Citrus tristeza virus
RepID=UPI0000164AC8
Length = 3582
Score = 82.4 bits (202), Expect = 2e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2777 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2836
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 2837 VSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2891
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 2892 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2949
Query: 563 DNV 571
V
Sbjct: 2950 KRV 2952
[130][TOP]
>UniRef100_Q9DJT7 Putative uncharacterized protein (Fragment) n=2 Tax=Citrus tristeza
virus RepID=Q9DJT7_9CLOS
Length = 371
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[131][TOP]
>UniRef100_Q9DJT6 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT6_9CLOS
Length = 301
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[132][TOP]
>UniRef100_Q9DJT2 Putative uncharacterized protein (Fragment) n=4 Tax=Citrus tristeza
virus RepID=Q9DJT2_9CLOS
Length = 371
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[133][TOP]
>UniRef100_Q9DJT1 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT1_9CLOS
Length = 371
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[134][TOP]
>UniRef100_Q9DJR7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR7_9CLOS
Length = 371
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[135][TOP]
>UniRef100_Q9DJR5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR5_9CLOS
Length = 371
Score = 82.4 bits (202), Expect = 2e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 58 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVS 172
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230
Query: 563 DNV 571
V
Sbjct: 231 KRV 233
[136][TOP]
>UniRef100_Q9DJN9 Polyprotein (Fragment) n=9 Tax=Citrus tristeza virus
RepID=Q9DJN9_9CLOS
Length = 371
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[137][TOP]
>UniRef100_Q8B3T9 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=Q8B3T9_9CLOS
Length = 3122
Score = 82.4 bits (202), Expect = 2e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2775 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2889
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2947
Query: 563 DNV 571
V
Sbjct: 2948 KRV 2950
[138][TOP]
>UniRef100_Q66237 349-kDa viral polyprotein n=1 Tax=Citrus tristeza virus
RepID=Q66237_9CLOS
Length = 3124
Score = 82.4 bits (202), Expect = 2e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2777 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2836
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 2837 VSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2891
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 2892 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2949
Query: 563 DNV 571
V
Sbjct: 2950 KRV 2952
[139][TOP]
>UniRef100_C0L2T4 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2T4_9VIRU
Length = 1648
Score = 82.4 bits (202), Expect = 2e-14
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD EQ
Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAEQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[140][TOP]
>UniRef100_B9VB08 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB08_9CLOS
Length = 3116
Score = 82.4 bits (202), Expect = 2e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 2849
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 2850 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944
[141][TOP]
>UniRef100_B5THC9 p1a n=1 Tax=Citrus tristeza virus RepID=B5THC9_9CLOS
Length = 3122
Score = 82.4 bits (202), Expect = 2e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2775 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2889
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2947
Query: 563 DNV 571
V
Sbjct: 2948 KRV 2950
[142][TOP]
>UniRef100_UPI000019AB7D polyprotein n=2 Tax=Cucurbit yellow stunting disorder virus
RepID=UPI000019AB7D
Length = 2482
Score = 82.0 bits (201), Expect = 3e-14
Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R +
Sbjct: 1733 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1792
Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
+ R+HK LT K I++R P D Y L Y N PV N VLRS+
Sbjct: 1793 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1852
Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF
Sbjct: 1853 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1908
Query: 566 NVY 574
+VY
Sbjct: 1909 HVY 1911
[143][TOP]
>UniRef100_Q9DJT0 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT0_9CLOS
Length = 366
Score = 82.0 bits (201), Expect = 3e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 53 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 112
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 113 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 167
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 168 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 225
Query: 563 DNV 571
V
Sbjct: 226 KRV 228
[144][TOP]
>UniRef100_Q9DJS7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS7_9CLOS
Length = 371
Score = 82.0 bits (201), Expect = 3e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 58 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 172
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230
Query: 563 DNV 571
V
Sbjct: 231 KRV 233
[145][TOP]
>UniRef100_Q9DJR9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR9_9CLOS
Length = 371
Score = 82.0 bits (201), Expect = 3e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVXSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
[146][TOP]
>UniRef100_Q9DJQ9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ9_9CLOS
Length = 371
Score = 82.0 bits (201), Expect = 3e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 58 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVS 172
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230
Query: 563 DNV 571
V
Sbjct: 231 KRV 233
[147][TOP]
>UniRef100_Q8JUV0 1a n=1 Tax=Cucurbit yellow stunting disorder virus RepID=Q8JUV0_9CLOS
Length = 1977
Score = 82.0 bits (201), Expect = 3e-14
Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R +
Sbjct: 1733 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1792
Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
+ R+HK LT K I++R P D Y L Y N PV N VLRS+
Sbjct: 1793 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1852
Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF
Sbjct: 1853 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1908
Query: 566 NVY 574
+VY
Sbjct: 1909 HVY 1911
[148][TOP]
>UniRef100_Q70UT1 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=Q70UT1_9CLOS
Length = 2483
Score = 82.0 bits (201), Expect = 3e-14
Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R +
Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793
Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
+ R+HK LT K I++R P D Y L Y N PV N VLRS+
Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853
Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF
Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909
Query: 566 NVY 574
+VY
Sbjct: 1910 HVY 1912
[149][TOP]
>UniRef100_C9EFC7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C9EFC7_9VIRU
Length = 1648
Score = 82.0 bits (201), Expect = 3e-14
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ IT R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[150][TOP]
>UniRef100_C9EFC3 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C9EFC3_9VIRU
Length = 1648
Score = 82.0 bits (201), Expect = 3e-14
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ IT R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[151][TOP]
>UniRef100_C3V8Q5 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C3V8Q5_9VIRU
Length = 1648
Score = 82.0 bits (201), Expect = 3e-14
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ IT R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[152][TOP]
>UniRef100_B9VB56 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB56_9CLOS
Length = 3122
Score = 82.0 bits (201), Expect = 3e-14
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2775 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVS 2889
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 2947
Query: 563 DNV 571
V
Sbjct: 2948 KRV 2950
[153][TOP]
>UniRef100_B9VB20 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB20_9CLOS
Length = 3116
Score = 82.0 bits (201), Expect = 3e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLQLTTQLLFVDECFMV 2793
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDFGVSLLHDIDAFIQPEHRIYGEV---- 2849
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 2850 -SYRCPWDICERLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944
[154][TOP]
>UniRef100_A5JM41 p227 n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=A5JM41_9CLOS
Length = 1978
Score = 82.0 bits (201), Expect = 3e-14
Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R +
Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793
Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
+ R+HK LT K I++R P D Y L Y N PV N VLRS+
Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853
Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF
Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909
Query: 566 NVY 574
+VY
Sbjct: 1910 HVY 1912
[155][TOP]
>UniRef100_A5JM40 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=A5JM40_9CLOS
Length = 2483
Score = 82.0 bits (201), Expect = 3e-14
Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R +
Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793
Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
+ R+HK LT K I++R P D Y L Y N PV N VLRS+
Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853
Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF
Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909
Query: 566 NVY 574
+VY
Sbjct: 1910 HVY 1912
[156][TOP]
>UniRef100_Q9DJP4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP4_9CLOS
Length = 366
Score = 81.6 bits (200), Expect = 4e-14
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L+ DECF+
Sbjct: 18 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLLVDECFMV 77
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H+ G+V
Sbjct: 78 HAGAIGAVXEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRTYGEV---- 133
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 134 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 192
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 193 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 228
[157][TOP]
>UniRef100_C8CJL7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C8CJL7_9VIRU
Length = 1648
Score = 81.6 bits (200), Expect = 4e-14
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ IT R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[158][TOP]
>UniRef100_Q9Q6Q4 Helicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1
RepID=Q9Q6Q4_9CLOS
Length = 398
Score = 81.3 bits (199), Expect = 5e-14
Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
Frame = +2
Query: 128 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 298
+ DE ++ H G+ G EVI +GD QIPF++R +FV + + +++
Sbjct: 163 LIDEVYMLHKGMFQLTVVSMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEEQIDYT 222
Query: 299 LITWRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 457
I++R PAD Y L K Y N + R LRS E VPI +P +
Sbjct: 223 DISYRCPADVCYVLSSMTDARGKKMYPNGVFPNGDVRPLRSFEKVPIATPEDALLYEADV 282
Query: 458 YLCHTQAEKAVL-KAQTHL-----KGCDNIFTTHEAQGKTFDNV 571
YL TQ EKA + KA + K ++ TTHEAQGKT++NV
Sbjct: 283 YLTMTQNEKAEMQKAVAKMEVVAGKKRPDVITTHEAQGKTYENV 326
[159][TOP]
>UniRef100_Q991N2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2
RepID=Q991N2_9CLOS
Length = 1980
Score = 81.3 bits (199), Expect = 5e-14
Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAA 175
+N S+ ++ ++ T+ + Y RT DS +M++ V K + DECFL HAG +
Sbjct: 1259 ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRVGKCDTVCIDECFLVHAGELKIC 1318
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
LAG EV +GD++QIPF++R +FV R+ + KV ++ +++R P+D L +
Sbjct: 1319 TALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGFKVIKRNVSYRCPSDVCVMLSE 1378
Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
K+KR VK +SR RS+ I+S V+ +++ TQ EK +
Sbjct: 1379 --KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVNN 1436
Query: 500 QT---HLKGCDNIFTTHEAQGKT 559
+ LK N T HE QGKT
Sbjct: 1437 EAKARRLKVSTN--TVHEIQGKT 1457
[160][TOP]
>UniRef100_Q991N1 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q991N1_9CLOS
Length = 1528
Score = 81.3 bits (199), Expect = 5e-14
Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAA 175
+N S+ ++ ++ T+ + Y RT DS +M++ V K + DECFL HAG +
Sbjct: 1259 ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRVGKCDTVCIDECFLVHAGELKIC 1318
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
LAG EV +GD++QIPF++R +FV R+ + KV ++ +++R P+D L +
Sbjct: 1319 TALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGFKVIKRNVSYRCPSDVCVMLSE 1378
Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
K+KR VK +SR RS+ I+S V+ +++ TQ EK +
Sbjct: 1379 --KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVNN 1436
Query: 500 QT---HLKGCDNIFTTHEAQGKT 559
+ LK N T HE QGKT
Sbjct: 1437 EAKARRLKVSTN--TVHEIQGKT 1457
[161][TOP]
>UniRef100_Q0GK55 Polyprotein 1a n=2 Tax=Strawberry chlorotic fleck associated virus
RepID=Q0GK55_9CLOS
Length = 2787
Score = 81.3 bits (199), Expect = 5e-14
Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
Frame = +2
Query: 8 RSSADELK------ETIDCSPLTKL-HYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLV 166
R + ELK E + L KL I T DSYLM VK ++ DECF+ HAG V
Sbjct: 2438 RRAKSELKGNLKEGENLSLGDLKKLTSTIYTVDSYLMHHINVKGDIMLVDECFMMHAGAV 2497
Query: 167 YAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL-----ITWRSPADAT 331
AA + C + +GD+ QI ++ RN H + + ++ +++R P D
Sbjct: 2498 TAAFQFSQCKKAALYGDSRQIHYIQRNDLGCSLLHDINDFLSDEVRVYGDVSFRCPWDVC 2557
Query: 332 YCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQ--T 505
L + + R +S S+ VV INS V + + +YL +TQ EK ++
Sbjct: 2558 EWLSLTYPVHIRSTNEDSVGKSSMRVVCINSVEEVPVDQDHVYLTYTQDEKRDVRKHLLK 2617
Query: 506 HLKGCDNIFTTHEAQGKTFDNV 571
+ C + T HEAQG T+ V
Sbjct: 2618 SVTDCPVVLTVHEAQGATYKYV 2639
[162][TOP]
>UniRef100_P87587 P346 n=1 Tax=Citrus tristeza virus RepID=P87587_9CLOS
Length = 3107
Score = 81.3 bits (199), Expect = 5e-14
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Frame = +2
Query: 29 KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAG 190
+E +D L K H ++T DSYLM+ +K L D CF+ HAG + A
Sbjct: 2739 RELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDVCFMVHAGAIGAVVEFTS 2797
Query: 191 CSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCL 340
V+ FGD+ QI ++ RN +F+ H++ G+V ++R P D L
Sbjct: 2798 RKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWL 2852
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--- 511
K++ ++ T S S+ + IN V +++A Y+ +TQAEK L Q HL
Sbjct: 2853 SKFYPRHVATANTGSIGRSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRL 2910
Query: 512 -----KGCDNIFTTHEAQGKTFDNV 571
K + T HE QG+T+ V
Sbjct: 2911 TVAGTKAVPIVNTVHEVQGETYKKV 2935
[163][TOP]
>UniRef100_D0EWY6 194 kDa readthrough protein n=2 Tax=Tobacco rattle virus
RepID=D0EWY6_9VIRU
Length = 1707
Score = 81.3 bits (199), Expect = 5e-14
Identities = 65/198 (32%), Positives = 91/198 (45%), Gaps = 8/198 (4%)
Frame = +2
Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
+ R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY
Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A +A I GD QI F R R L GK V K T+RSPAD L
Sbjct: 988 FCAQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVL 1047
Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
K++ + V+T++ S+ V I S V A Y+ Q+EK L L K
Sbjct: 1048 NKFYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKV 1104
Query: 518 CDNIFTTHEAQGKTFDNV 571
+ T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122
[164][TOP]
>UniRef100_C0L2S6 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2S6_9VIRU
Length = 1648
Score = 81.3 bits (199), Expect = 5e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATTDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[165][TOP]
>UniRef100_B7FAV2 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 10
RepID=B7FAV2_9CLOS
Length = 2294
Score = 81.3 bits (199), Expect = 5e-14
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRL---IFDECFLQHAGLVYA 172
++R++AD L E D +K + T DS++ S ++ + + DEC++ HAGL
Sbjct: 2017 ASRNAADSLNEYWDSDINSKRVIVMTVDSFIFSGGRFYSEDIYSVLLDECYMSHAGLCIL 2076
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERKLITWRSPADATYCLE 343
A L S + +GD Q+PF++RNP F L G KL+T+R PAD Y +
Sbjct: 2077 IAALTNPSFLSFYGDRRQVPFINRNPIFRDSMGMLKVSQGSYTEKLLTYRCPADICYWMS 2136
Query: 344 KYFYKN------KRPVKT--NSRVLRSIEVVPIN-SPVSVERNTNALYLCHTQAEKAVLK 496
Y PVKT + R L+S+ + P + S + ++ + + + TQ EK L
Sbjct: 2137 SVDYLKPGGRLYSGPVKTVKDGRPLKSVRITPFSPSQLDFMKHVDRV-MTFTQLEKTDLI 2195
Query: 497 AQTHLKGCDN-------IFTTHEAQGKTFDNV 571
++ G + I T E+QG+T+ V
Sbjct: 2196 SKFQTAGFGDRDAAEQLIGTVAESQGETYSRV 2227
[166][TOP]
>UniRef100_A0SEL1 126 kDa replicase n=1 Tax=Maracuja mosaic virus RepID=A0SEL1_9VIRU
Length = 1103
Score = 81.3 bits (199), Expect = 5e-14
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+L++ V+ + DE + H G++ + C + FGDT+QIPF++R
Sbjct: 871 VRTFDSFLINRVPVRFDTVWVDEGLMVHTGVIQFSRLRTNCKRMYVFGDTKQIPFINRVM 930
Query: 251 SFVF----RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418
+F + R K+ +E + +T R PAD T L + + V T S LRS++ +
Sbjct: 931 TFDYPECLRSLKV-NSIETRSVTKRCPADVTVYLSSQYESH---VLTTSNTLRSVDAQLL 986
Query: 419 -NSPVSVERNT--NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ V R T N + TQA+KA+LK ++ + T HE QG TFD V
Sbjct: 987 KGAAVLTPRETVLNGKIVTFTQADKALLKKNGYI----GVNTVHEVQGDTFDEV 1036
[167][TOP]
>UniRef100_Q9DJP9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP9_9CLOS
Length = 357
Score = 80.9 bits (198), Expect = 7e-14
Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 26/216 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 12 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 71
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 72 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 127
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 128 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 186
Query: 482 KAVLKAQ------THLKGCDNIFTTHEAQGKTFDNV 571
K L+ K + T HE QG+T+ V
Sbjct: 187 KNDLQKHHGRLTVGRTKVVPIVNTVHEVQGETYKRV 222
[168][TOP]
>UniRef100_Q8QZF3 126 kDa protein n=1 Tax=Pepper mild mottle virus RepID=Q8QZF3_9VIRU
Length = 1117
Score = 80.9 bits (198), Expect = 7e-14
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R
Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + K + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[169][TOP]
>UniRef100_Q8QTJ1 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q8QTJ1_9VIRU
Length = 1648
Score = 80.9 bits (198), Expect = 7e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[170][TOP]
>UniRef100_Q8QTI9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q8QTI9_9VIRU
Length = 1648
Score = 80.9 bits (198), Expect = 7e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[171][TOP]
>UniRef100_Q5DWU9 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q5DWU9_9VIRU
Length = 1612
Score = 80.9 bits (198), Expect = 7e-14
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R
Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + K + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[172][TOP]
>UniRef100_Q4W8Q6 126k protein n=1 Tax=Pepper mild mottle virus RepID=Q4W8Q6_9VIRU
Length = 1117
Score = 80.9 bits (198), Expect = 7e-14
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R
Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + K + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[173][TOP]
>UniRef100_Q2XP16 P353 n=1 Tax=Citrus tristeza virus RepID=Q2XP16_9CLOS
Length = 3124
Score = 80.9 bits (198), Expect = 7e-14
Identities = 61/199 (30%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
Frame = +2
Query: 29 KETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIG 208
K DCS + T DSYLM+ + Q L DECF+ HAG + A C V+
Sbjct: 2766 KYVTDCSSR-----VFTVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVF 2820
Query: 209 FGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYK 358
FGD++QI ++ RN +F+ H++ G+V ++R P D L ++ +
Sbjct: 2821 FGDSKQIHYIHRNDLGVSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFNPR 2875
Query: 359 NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------K 514
+ S S+ + IN V + A Y+ +TQAEK L Q HL K
Sbjct: 2876 HVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNK 2933
Query: 515 GCDNIFTTHEAQGKTFDNV 571
+ T HE QG+T+ V
Sbjct: 2934 VVPIVNTVHEVQGETYKRV 2952
[174][TOP]
>UniRef100_Q1XG51 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q1XG51_9VIRU
Length = 1612
Score = 80.9 bits (198), Expect = 7e-14
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R
Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + K + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[175][TOP]
>UniRef100_D0EAL9 349 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAL9_9CLOS
Length = 3116
Score = 80.9 bits (198), Expect = 7e-14
Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWRS 316
HAG + A C V+ FGD++QI ++ RN V H + ++ + +++R
Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHCIYGEVSYRC 2853
Query: 317 PADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK 496
P D L +++ ++ S S+ + IN V + A Y+ +TQAEK L
Sbjct: 2854 PWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAEKNDL- 2912
Query: 497 AQTHL--------KGCDNIFTTHEAQGKTFDNV 571
Q HL K + T HE QG+T+ V
Sbjct: 2913 -QKHLSRLTVGRTKVVPIVNTVHEVQGETYKRV 2944
[176][TOP]
>UniRef100_C0L2T0 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2T0_9VIRU
Length = 1648
Score = 80.9 bits (198), Expect = 7e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[177][TOP]
>UniRef100_B9VB44 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB44_9CLOS
Length = 3121
Score = 80.9 bits (198), Expect = 7e-14
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2774 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2833
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H + G+V ++R P D L +++ ++ S S+
Sbjct: 2834 VSLLHDIDAFIQPEHHIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVS 2888
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 2889 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 2946
Query: 563 DNV 571
V
Sbjct: 2947 KRV 2949
[178][TOP]
>UniRef100_B0FWD9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=B0FWD9_9VIRU
Length = 1648
Score = 80.9 bits (198), Expect = 7e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[179][TOP]
>UniRef100_A7KY79 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=A7KY79_9VIRU
Length = 1648
Score = 80.9 bits (198), Expect = 7e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[180][TOP]
>UniRef100_A4PE19 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=A4PE19_9VIRU
Length = 1612
Score = 80.9 bits (198), Expect = 7e-14
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R
Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + K + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[181][TOP]
>UniRef100_P29098 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain
Spain) RepID=RDRP_PMMVS
Length = 1612
Score = 80.9 bits (198), Expect = 7e-14
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R
Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + K + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[182][TOP]
>UniRef100_P89657 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain
Japan) RepID=RDRP_PMMVJ
Length = 1612
Score = 80.9 bits (198), Expect = 7e-14
Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R
Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + K + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[183][TOP]
>UniRef100_UPI00001BBB39 polyprotein n=1 Tax=Little cherry virus 2 RepID=UPI00001BBB39
Length = 2150
Score = 80.5 bits (197), Expect = 9e-14
Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175
+N S+ ++ + ++ T+ + Y RT DS +M S A K + DECFL HAG +
Sbjct: 1371 ANLESSLDINKQLNAERRTEGVRYARTIDSRVMNSLRAGKCDTVCIDECFLVHAGELKIC 1430
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
A LAG EV +GD++QIPF++R SF ++ + KV ++ +++R P+D L +
Sbjct: 1431 AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 1490
Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
++KR VK +SR RS+ I+S V+ +++ TQ EK +
Sbjct: 1491 --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSN 1548
Query: 500 QTH---LKGCDNIFTTHEAQGKT 559
+ LK N T HE QGKT
Sbjct: 1549 EARARKLKVSSN--TVHEIQGKT 1569
[184][TOP]
>UniRef100_Q8BEP9 Methyltransferase/helicase polyprotein n=3 Tax=Grapevine rootstock
stem lesion associated virus RepID=Q8BEP9_9CLOS
Length = 2931
Score = 80.5 bits (197), Expect = 9e-14
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 2611 IYTIDAYLMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2670
Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
+ L V+ + +++R P D L + VK S S+ +
Sbjct: 2671 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINE 2730
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
INS + + + YLC Q+EK + KG N+ T HEAQG+T+ V
Sbjct: 2731 INSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARV 2784
[185][TOP]
>UniRef100_Q9IR66 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q9IR66_9VIRU
Length = 1648
Score = 80.5 bits (197), Expect = 9e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[186][TOP]
>UniRef100_Q7T738 P182 n=1 Tax=Little cherry virus 2 RepID=Q7T738_9CLOS
Length = 1640
Score = 80.5 bits (197), Expect = 9e-14
Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175
+N S+ ++ + ++ T+ + Y RT DS +M S A K + DECFL HAG +
Sbjct: 1371 ANLESSLDINKQLNAERRTEGVRYARTIDSRVMNSLRAGKCDTVCIDECFLVHAGELKIC 1430
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
A LAG EV +GD++QIPF++R SF ++ + KV ++ +++R P+D L +
Sbjct: 1431 AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 1490
Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
++KR VK +SR RS+ I+S V+ +++ TQ EK +
Sbjct: 1491 --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSN 1548
Query: 500 QTH---LKGCDNIFTTHEAQGKT 559
+ LK N T HE QGKT
Sbjct: 1549 EARARKLKVSSN--TVHEIQGKT 1569
[187][TOP]
>UniRef100_Q14V59 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q14V59_9VIRU
Length = 1648
Score = 80.5 bits (197), Expect = 9e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFIFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[188][TOP]
>UniRef100_C7EN47 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C7EN47_9VIRU
Length = 1648
Score = 80.5 bits (197), Expect = 9e-14
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC FGD +Q
Sbjct: 905 SPVATSDNVRTFDSFVMNRKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFIFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[189][TOP]
>UniRef100_P69514 Replicase small subunit n=1 Tax=Cucumber green mottle mosaic virus
(watermelon strain SH) RepID=RDRP_CGMVS
Length = 1648
Score = 80.5 bits (197), Expect = 9e-14
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P D T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[190][TOP]
>UniRef100_Q806Y9 Methyltransferase and helicase polyprotein n=1 Tax=Cucumber yellows
virus RepID=Q806Y9_9CLOS
Length = 1887
Score = 80.1 bits (196), Expect = 1e-13
Identities = 60/197 (30%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Frame = +2
Query: 23 ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199
E+ + +T H Y T DS LM V L DE F+ H G +A L C
Sbjct: 1624 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEVTITNLYCDEIFMVHCGEWFACLNLIKCQS 1683
Query: 200 VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370
+ FGD QIP+++R P+ V H +T +E I++R P D Y L P
Sbjct: 1684 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 1743
Query: 371 V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520
+ +N LRS+ V P+NSP ++ ++ TQ EK + LK
Sbjct: 1744 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 1803
Query: 521 DNIFTTHEAQGKTFDNV 571
+ T +E QG TF V
Sbjct: 1804 KSANTVNEVQGGTFPTV 1820
[191][TOP]
>UniRef100_Q49IH3 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2
RepID=Q49IH3_9CLOS
Length = 2936
Score = 80.1 bits (196), Expect = 1e-13
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 2616 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERND 2675
Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
+ L V+ + +++R P D L + VK S S+ +
Sbjct: 2676 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2735
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
INS + + + YLC Q+EK + KG N+ T HEAQG+T+ V
Sbjct: 2736 INSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARV 2789
[192][TOP]
>UniRef100_Q2V8A8 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=Q2V8A8_9CLOS
Length = 1317
Score = 80.1 bits (196), Expect = 1e-13
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 997 IYTIDAYLMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 1056
Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
+ L V+ + +++R P D L + VK S S+ +
Sbjct: 1057 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINE 1116
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
INS + + + YLC Q+EK + KG N+ T HEAQG+T+ V
Sbjct: 1117 INSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARV 1170
[193][TOP]
>UniRef100_Q9DJS3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS3_9CLOS
Length = 370
Score = 79.7 bits (195), Expect = 1e-13
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
T DSYLM+ + Q L DE F+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 57 TVDSYLMNHLRLTTQLLFVDEYFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 116
Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
+F+ H++ G+V ++R P D L +++ ++ S S+
Sbjct: 117 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 171
Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
+ IN V N A Y+ +TQAEK L Q HL K + T HE QG+T+
Sbjct: 172 IEEINGCDDVPYNKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 229
Query: 563 DNV 571
V
Sbjct: 230 KRV 232
[194][TOP]
>UniRef100_Q83943 1a protein n=1 Tax=Olive latent virus 2 RepID=Q83943_OLV2
Length = 908
Score = 79.7 bits (195), Expect = 1e-13
Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 21/206 (10%)
Frame = +2
Query: 23 ELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEV 202
+LK DC+ IRT DSYL+ V+A+RL DE L H G + AA A C +
Sbjct: 668 QLKPGTDCAKR-----IRTVDSYLLKPD-VQAKRLFIDEAGLVHPGKLLAAMRFAECDDC 721
Query: 203 IGFGDTEQIPFVSRNPSF---VFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPV 373
+ FGD+EQIPFV+ S F ++ + R+ T+R PAD T L + K K +
Sbjct: 722 LLFGDSEQIPFVNIVESLQPAKFLKLEVDAREVRE-TTYRCPADVTATLATLYKKKK--I 778
Query: 374 KTNSRVLRSIEVVPINSPVSVE-RNTNALYLCHTQAEKAVLKAQTHLKGCDNIF------ 532
T S+VL+S+ + S +V + ++ +L QA+KA L D+++
Sbjct: 779 VTKSKVLKSVTSKSLASASAVSGLDPHSWHLTMYQADKAELVRVARTNQMDDVWIKEHIK 838
Query: 533 TTHEAQG-----------KTFDNVYF 577
T HEAQG KTFD F
Sbjct: 839 TVHEAQGISVPHVKLYRFKTFDQPLF 864
[195][TOP]
>UniRef100_B9VB32 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB32_9CLOS
Length = 3116
Score = 79.7 bits (195), Expect = 1e-13
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 28/218 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
+N++S E+ + I +++ + T DSYLM+ + Q L DECF+
Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793
Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V
Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 2849
Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
++R P D +++ ++ S S+ + IN V + A Y+ +TQAE
Sbjct: 2850 -SYRCPWDICEWPSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908
Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
K L Q HL K + T HE QG+T+ V
Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944
[196][TOP]
>UniRef100_P90211 Replicase small subunit n=1 Tax=Obuda pepper virus RepID=RDRP_TMOB
Length = 1616
Score = 79.7 bits (195), Expect = 1e-13
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 9/176 (5%)
Frame = +2
Query: 71 IRTCDSYLMSAS---AVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
++T DS+LM+ + +RL DE + H G VY L+ C+E FGDT+QIP+++
Sbjct: 881 VKTVDSFLMNLGKGPVCQFKRLFVDEGLMLHPGCVYFLVKLSLCNEAFVFGDTQQIPYIN 940
Query: 242 RNPSFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
R +F F H + + E++ T R P D T+ L + + V T S+ RS+ +
Sbjct: 941 RVQNFPFPQHFSKLIVDETEKRRTTLRCPVDVTHFLNQCY---DGAVTTTSKTQRSVGLE 997
Query: 413 PINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + T L + TQ++K + + +G ++ T HE QG+T++ V
Sbjct: 998 VVGGAAVMNPVTKPLKGKIVTFTQSDKLTMLS----RGYQDVNTVHEIQGETYEEV 1049
[197][TOP]
>UniRef100_Q91E35 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q91E35_9VIRU
Length = 1612
Score = 79.3 bits (194), Expect = 2e-13
Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ + Q RL DE + H G V ++ CSE +GDT+QIP+++R
Sbjct: 884 VRTVDSFLMNYGRGQCQFKRLFLDEGLMLHPGCVNFLVGMSLCSEAFIYGDTQQIPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + + + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDVVETRRTTLRCPADITFFLNQRY---EGQVMCASSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[198][TOP]
>UniRef100_Q8UYT4 1a protein n=1 Tax=Tomato aspermy virus RepID=Q8UYT4_TAV
Length = 993
Score = 79.3 bits (194), Expect = 2e-13
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Frame = +2
Query: 2 SNRSSADELKETI-DCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175
+N+ SA ++++ + +C+ + ++RT DS LM+ + + QR++ DE L H G + A
Sbjct: 738 ANKKSALDVRQALFNCTDSKEATTFVRTADSILMNDTN-EVQRVLVDEVVLLHFGQLCAV 796
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328
+ I FGD+EQI F SR+ SF RH + + + T+RSP D A
Sbjct: 797 MSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDETDTADTTFRSPQDVIKVVKCMA 856
Query: 329 TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
+ L+K + + S+V RS+ + S V+ + Y+ TQA+K L+ +
Sbjct: 857 SKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLTEDRFYITMTQADKTALRTRAR 916
Query: 509 LKGCDNIF------TTHEAQGKTFDNV 571
N F TTHE+QG + D+V
Sbjct: 917 ELNMSNDFIEHRIKTTHESQGVSEDHV 943
[199][TOP]
>UniRef100_Q8JTI3 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q8JTI3_9CLOS
Length = 1112
Score = 79.3 bits (194), Expect = 2e-13
Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175
+N S+ ++ ++ T+ + Y RT DS +M S A + + DECFL HAG +
Sbjct: 843 ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRAGRCDTVCIDECFLVHAGELKIC 902
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
A LAG EV +GD++QIPF++R SF ++ + KV ++ +++R P+D L +
Sbjct: 903 AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 962
Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
++KR VK +SR RS+ I+S V+ +++ TQ EK ++
Sbjct: 963 --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSVTDVDMENGDVFVTFTQDEKHMVSN 1020
Query: 500 QT---HLKGCDNIFTTHEAQGKT 559
+ LK N T HE QGKT
Sbjct: 1021 EAKARKLKVSSN--TVHEIQGKT 1041
[200][TOP]
>UniRef100_O71209 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=O71209_9CLOS
Length = 2473
Score = 79.3 bits (194), Expect = 2e-13
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 2153 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2212
Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
+ L V+ + I++R P D L + VK S S+ +
Sbjct: 2213 LDKCLYGDLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2272
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
INS + + + +LC Q+EK + KG N+ T HEAQG+T+ V
Sbjct: 2273 INSVDDLVPDVGSTFLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARV 2326
[201][TOP]
>UniRef100_B7U5T5 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2
RepID=B7U5T5_9CLOS
Length = 2936
Score = 79.3 bits (194), Expect = 2e-13
Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 2616 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2675
Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
+ L V+ + I++R P D L + VK S S+ +
Sbjct: 2676 LDKCLYGDLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2735
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
INS + + + +LC Q+EK + KG N+ T HEAQG+T+ V
Sbjct: 2736 INSVDDLVPDVGSTFLCMLQSEKLEISKHFIRKGLPKLNVLTVHEAQGETYARV 2789
[202][TOP]
>UniRef100_A8RS49 Polyprotein n=1 Tax=Plum bark necrosis stem pitting-associated virus
RepID=A8RS49_9CLOS
Length = 2343
Score = 79.3 bits (194), Expect = 2e-13
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 16/189 (8%)
Frame = +2
Query: 53 LTKLHYIRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTE 223
L K+ +RT DS L++ + ++ DEC+L HAG + A +L S+V +GD
Sbjct: 2089 LLKIIRVRTVDSALINFDNSPIYTNCEMLIDECYLPHAGQLQAIFSLYTPSKVSMYGDRH 2148
Query: 224 QIPFVSRNPSFV---FRHHKLTGKVERKLITWRSPADATY---CLEKYFYK-NKRPVKTN 382
QIPF+ R FV H+ K L ++R PAD Y C+ K K V T
Sbjct: 2149 QIPFIPRTEGFVCTRAEHNIDEDKYSEVLKSYRCPADICYWMNCVAKAPEKVYSGLVTTF 2208
Query: 383 SRVLRSIEVVP-INSPVSVERNTNALYLCHTQAEKA-----VLKAQTHLKGCDNIFTTHE 544
++VLRS+ +P P + + NA+ L TQA+K V A+ +K ++ T HE
Sbjct: 2209 NKVLRSVVKIPSAVIPSHLIKEANAI-LTFTQADKEMAFKFVAGAKLGMKQKIHVSTIHE 2267
Query: 545 AQGKTFDNV 571
AQGKTF+NV
Sbjct: 2268 AQGKTFENV 2276
[203][TOP]
>UniRef100_P28931 Methyltransferase n=1 Tax=Tomato aspermy virus RepID=ORF1A_TAV
Length = 993
Score = 79.3 bits (194), Expect = 2e-13
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Frame = +2
Query: 2 SNRSSADELKETI-DCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175
+N+ SA ++++ + +C+ + ++RT DS LM+ + + QR++ DE L H G + A
Sbjct: 738 ANKKSALDVRQALFNCTDSKEATTFVRTADSILMNDTN-EVQRVLVDEVVLLHFGQLCAV 796
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328
+ I FGD+EQI F SR+ SF RH + + + T+RSP D A
Sbjct: 797 MSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDETDTADTTFRSPQDVIKVVKCMA 856
Query: 329 TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
+ L+K + + S+V RS+ + S V+ + Y+ TQA+K L+ +
Sbjct: 857 SKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLTEDRFYITMTQADKTALRTRAR 916
Query: 509 LKGCDNIF------TTHEAQGKTFDNV 571
N F TTHE+QG + D+V
Sbjct: 917 ELNMSNDFIEHRIKTTHESQGVSEDHV 943
[204][TOP]
>UniRef100_Q5I2N9 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q5I2N9_9VIRU
Length = 1612
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 10/177 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
+RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+Q P+++R
Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQTPYINR 943
Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
+F + H VE + T R PAD T+ L + K + V S V RS+ EV
Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000
Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051
[205][TOP]
>UniRef100_C7B977 ORF 1a/1b fusion protein n=2 Tax=Tomato infectious chlorosis virus
RepID=C7B977_9CLOS
Length = 2394
Score = 79.0 bits (193), Expect = 3e-13
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Frame = +2
Query: 71 IRTCDSYLMSA-SAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247
+RT DS LM+ + ++ + FDE ++ H+G A + + +GD Q+P+++RN
Sbjct: 1642 VRTYDSLLMNTPNVIELDKAYFDEAYMIHSGQFLVCAAKLKYNNLYCYGDVNQLPYINRN 1701
Query: 248 PSFVFRHHKLTGKVERKL----ITWRSPADATYCLE-------KYFY----KNKRPVKTN 382
P +V +H + + +L T+R PAD Y L K Y KN P
Sbjct: 1702 P-YVTDYHSFSIFEDVELNHDDKTFRCPADVCYLLSNLKNDAGKPLYPRGVKNSNP---G 1757
Query: 383 SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLK---GCDN-IFTTHEAQ 550
S+V+RS EV +N +E + YL TQ EK ++ Q H+ GC++ + T HEAQ
Sbjct: 1758 SKVIRSCEVEGVNGVNQIEIQKDVKYLTFTQDEK--IELQHHIARSGGCEHEVNTVHEAQ 1815
Query: 551 GKTFDNV 571
G TF +V
Sbjct: 1816 GCTFPSV 1822
[206][TOP]
>UniRef100_Q6PY89 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q6PY89_9VIRU
Length = 1612
Score = 78.6 bits (192), Expect = 3e-13
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R
Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934
Query: 251 SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H T E + ++ R PAD T+ + K V S V+RS++ +
Sbjct: 935 NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTSDVIRSVDAEVVR 991
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571
+ L + TQ++KA LK + + + + T HE QG+TF++V
Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEVNTVHEIQGETFEDV 1046
[207][TOP]
>UniRef100_Q5I5A7 1a protein (Fragment) n=1 Tax=Beet pseudo-yellows virus
RepID=Q5I5A7_9CLOS
Length = 456
Score = 78.6 bits (192), Expect = 3e-13
Identities = 59/197 (29%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
Frame = +2
Query: 23 ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199
E+ + +T H Y T DS LM L DE F+ H G +A L C
Sbjct: 238 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQS 297
Query: 200 VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370
+ FGD QIP+++R P+ V H +T +E I++R P D Y L P
Sbjct: 298 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 357
Query: 371 V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520
+ +N LRS+ V P+NSP ++ ++ TQ EK + LK
Sbjct: 358 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 417
Query: 521 DNIFTTHEAQGKTFDNV 571
+ T +E QG TF +V
Sbjct: 418 KSANTVNEVQGGTFPSV 434
[208][TOP]
>UniRef100_B3FQ64 Polyprotein (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3
RepID=B3FQ64_9CLOS
Length = 2233
Score = 78.6 bits (192), Expect = 3e-13
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Frame = +2
Query: 119 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298
+R++ DE ++ H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFAIGASEGLFFGDINQIPFINREKVFRMDCAAFVPKKESV 2063
Query: 299 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSVTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 449 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571
+YLC TQ EK+ +K KG + + T HEAQGKTF +V
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDV 2165
[209][TOP]
>UniRef100_A9EEU4 129K replicase protein n=1 Tax=Cucumber green mottle mosaic virus
RepID=A9EEU4_9VIRU
Length = 1144
Score = 78.6 bits (192), Expect = 3e-13
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q
Sbjct: 905 SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964
Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
IPF++R +F + T VER+ +T R P + T L + K V T S V+
Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRELTSFLNTIY---KAAVATTSPVVH 1021
Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
S++ + ++ + + + TQ++K L G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076
[210][TOP]
>UniRef100_Q6VRA8 ORF 1a/1b fusion polyprotein n=2 Tax=Beet pseudo-yellows virus
RepID=Q6VRA8_9CLOS
Length = 2441
Score = 78.2 bits (191), Expect = 4e-13
Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 14/197 (7%)
Frame = +2
Query: 23 ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199
E+ + +T H Y T DS LM L DE F+ H G +A L C
Sbjct: 1673 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQS 1732
Query: 200 VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370
+ FGD QIP+++R P+ V H +T +E I++R P D Y L P
Sbjct: 1733 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 1792
Query: 371 V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520
+ +N LRS+ V P+NSP ++ ++ TQ EK + LK
Sbjct: 1793 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 1852
Query: 521 DNIFTTHEAQGKTFDNV 571
+ T +E QG TF V
Sbjct: 1853 KSANTVNEVQGGTFPTV 1869
[211][TOP]
>UniRef100_C0MNB2 1a protein n=1 Tax=Gayfeather mild mottle virus RepID=C0MNB2_9BROM
Length = 988
Score = 78.2 bits (191), Expect = 4e-13
Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 17/207 (8%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTK--LHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175
+N+ SA ++++ + S +K ++RT DS L++ A R++ DE L H G + A
Sbjct: 733 ANKKSALDVRQALFNSTDSKEATTFVRTADSVLLN-DASDVSRVLIDEVVLLHFGQLCAV 791
Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328
I FGD+EQI F SR+ SF R+ K L +V T+RSP D A
Sbjct: 792 MAKLKAVRAICFGDSEQIAFNSRDASFDMRNSKLLPDEVSSADTTFRSPQDVVPIVKLMA 851
Query: 329 TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
T L K + + S+V RS+ + S V+ + + Y+ TQA+KA L ++
Sbjct: 852 TKALPKGTHTKYTRWVSQSKVQRSVSTRSVASVTMVDLSEDRFYITMTQADKAALISRAK 911
Query: 509 LKGC------DNIFTTHEAQGKTFDNV 571
+NI TTHE+QG + D+V
Sbjct: 912 ELNMSKRFVENNIKTTHESQGISEDHV 938
[212][TOP]
>UniRef100_B2C4F9 Methyl transferase/helicase n=1 Tax=Grapevine leafroll-associated
virus 3 RepID=B2C4F9_9CLOS
Length = 2237
Score = 78.2 bits (191), Expect = 4e-13
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Frame = +2
Query: 119 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298
+R++ DE ++ H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063
Query: 299 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 449 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571
+YLC TQ EK+ +K KG + + T HEAQGKTF +V
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDV 2165
[213][TOP]
>UniRef100_Q88920 Replicase small subunit n=1 Tax=Turnip vein-clearing virus
RepID=RDRP_TVCV
Length = 1601
Score = 78.2 bits (191), Expect = 4e-13
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 6/171 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM S +RL DE + H G V L+ C +GDT+QIPF+ R
Sbjct: 876 VRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPFICRVA 935
Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H + + E + +T R PAD TY L K K V S V RS++ +
Sbjct: 936 NFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVR 992
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
++ T L L TQA+K L KG ++ T HE QG+T++
Sbjct: 993 GKGALNPITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYE 1039
[214][TOP]
>UniRef100_Q65715 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65715_BSMV
Length = 1138
Score = 77.8 bits (190), Expect = 6e-13
Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Frame = +2
Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
R++ D+L+E + + T H +RT DS L++ +A R FDE H G +
Sbjct: 863 RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 922
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337
A G SE++ GD Q+P + R F+ T + KL ++R P D A Y
Sbjct: 923 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 982
Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
K FYK K + V T++ V RS+ +P V V +NT+ YL QAEK
Sbjct: 983 SAKEFYKVKGIPQKVTTSNSVKRSLYARGETTPERFVSLLDVPVRKNTH--YLTFLQAEK 1040
Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
L + KG ++I T HEAQG T++NV
Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071
[215][TOP]
>UniRef100_Q3YFN1 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q3YFN1_9VIRU
Length = 1617
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R
Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934
Query: 251 SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H T E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 935 NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571
+ L + TQ++KA LK + + + I T HE QG+TF++V
Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046
[216][TOP]
>UniRef100_A1YLW4 Replicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1
RepID=A1YLW4_9CLOS
Length = 381
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Frame = +2
Query: 128 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 298
+ DE ++ H G+ G EVI +GD QIPF++R +FV + + +E
Sbjct: 146 LIDEVYMLHKGMFQLTVAAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYT 205
Query: 299 LITWRSPADATYCLEKY-------FYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 457
I++R PAD Y L Y N ++R LRS E VPI +P +
Sbjct: 206 DISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADV 265
Query: 458 YLCHTQAEKAVLK---AQTHL---KGCDNIFTTHEAQGKTFDNV 571
YL TQ EKA ++ A+ + K ++ TTHEAQGKT+ +V
Sbjct: 266 YLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDV 309
[217][TOP]
>UniRef100_P89659 Replicase small subunit n=3 Tax=Odontoglossum ringspot virus
RepID=RDRP_ORSVC
Length = 1612
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R
Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934
Query: 251 SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H T E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 935 NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571
+ L + TQ++KA LK + + + I T HE QG+TF++V
Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046
[218][TOP]
>UniRef100_O71188 P_protease/methyl transferase/helicase (Fragment) n=2 Tax=Grapevine
leafroll-associated virus 3 RepID=O71188_9CLOS
Length = 2233
Score = 77.0 bits (188), Expect = 1e-12
Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Frame = +2
Query: 119 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298
+R++ DE + H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063
Query: 299 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 449 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571
+YLC TQ EK+ +K KG + + T HEAQGKTF +V
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDV 2165
[219][TOP]
>UniRef100_A0ZXL9 Polyprotein (Fragment) n=1 Tax=Fig leaf mottle-associated virus 1
RepID=A0ZXL9_9CLOS
Length = 274
Score = 77.0 bits (188), Expect = 1e-12
Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Frame = +2
Query: 74 RTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
RT DS ++A V A+ ++ DECFL H GL+ L+G +V +GD +QIPF++R
Sbjct: 30 RTIDSLAINALRVGHAKVVLIDECFLVHFGLLKVVIALSGAHQVFLYGDRQQIPFINRVQ 89
Query: 251 SFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKR-------PVKTN--SRVL 394
+F + ++ GK + +K +++R P D C K++R VK +R
Sbjct: 90 TFKCNNSEIDGKRMQIIKKNVSYRCPGD--ICKRLSEMKDERGNLCYPQGVKKGNPNRPD 147
Query: 395 RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDN 568
RSIE+ I S V+ + + L TQ EK + + + N + T HEAQGK N
Sbjct: 148 RSIEMFKITSEADVDVRPDDIVLTFTQDEKKKMAEELRKRRLKNMVKTVHEAQGKEAGN 206
[220][TOP]
>UniRef100_A0PA51 Replicase large subunit n=2 Tax=Cucumber mottle virus
RepID=A0PA51_9VIRU
Length = 1672
Score = 77.0 bits (188), Expect = 1e-12
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
Frame = +2
Query: 50 PLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQI 229
P+ +RT DS++M+ K L DE + H GL+ + +AG +V FGD +QI
Sbjct: 928 PVATHDNVRTFDSFIMNKKPYKFTTLWVDEGLMVHTGLLNFSINIAGVKKVFVFGDRKQI 987
Query: 230 PFVSRNPSF---VFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRS 400
PF++R +F V + VER+ +T R P D T L + + V T S V S
Sbjct: 988 PFINRVMNFDYPVELSKLIVDNVERRDVTKRCPVDVTKFLNEVY---PNAVSTTSDVFYS 1044
Query: 401 IEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + P + A + TQ++K L+ G ++ T HE QG+TFD V
Sbjct: 1045 LNAKRVAGPGLLRPELTAFKGKIVTFTQSDKFTLEK----AGYTDVNTVHEIQGETFDEV 1100
[221][TOP]
>UniRef100_Q84133 Replicase small subunit n=2 Tax=Odontoglossum ringspot virus
RepID=RDRP_ORSVS
Length = 1612
Score = 77.0 bits (188), Expect = 1e-12
Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +L DE + H G V L+ C E + FGD EQIPF++R
Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFINRVA 934
Query: 251 SFVF-RHHKLTGKVERKL--ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + +H + T R++ ++ R PAD T+ + K V + V+RS++ +
Sbjct: 935 NFPYPKHFRYTCLYHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571
+ L + TQ++KA LK + + + I T HE QG+TF++V
Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046
[222][TOP]
>UniRef100_Q9Q703 P348 n=1 Tax=Beet yellows virus RepID=Q9Q703_9CLOS
Length = 3090
Score = 76.6 bits (187), Expect = 1e-12
Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 22/212 (10%)
Frame = +2
Query: 2 SNRSSADELKETIDC-------SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAG 160
+N+SS +E+ ++ +PL I T DSYLM+ + + L DECF+ HAG
Sbjct: 2277 ANKSSREEILAKVNRIVLDEGDTPLQTRDRILTIDSYLMNNRGLTCKVLYLDECFMVHAG 2336
Query: 161 LVYAAATLAGCSEVIGFGDTEQIPFVSRNP----------SFVFRHHKLTGKVERKLITW 310
A C I FGD+ QI ++ RN FV ++ G+V ++
Sbjct: 2337 AAVACIEFTKCDSAILFGDSRQIHYIDRNELDTAVLSDLNRFVDDESRVYGEV-----SY 2391
Query: 311 RSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAV 490
R P D L ++ K S S++V I S VE ++ +YL Q+EK
Sbjct: 2392 RCPWDVCAWLSTFYPKTVATTNLVSAGQSSMQVREIESVDDVEYSSEFVYLTMLQSEKKD 2451
Query: 491 L-----KAQTHLKGCDNIFTTHEAQGKTFDNV 571
L K + T HEAQG+T+ V
Sbjct: 2452 LLKSFGKRSRSSVEKPTVLTVHEAQGETYRKV 2483
[223][TOP]
>UniRef100_Q6JGW4 ORF 1a/1b fusion polyprotein n=2 Tax=Strawberry pallidosis-associated
virus RepID=Q6JGW4_9CLOS
Length = 2451
Score = 76.6 bits (187), Expect = 1e-12
Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
Frame = +2
Query: 68 YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247
Y+ T DSYLM K Q++ DE F+ HAG A L V +GD QIPF++R
Sbjct: 1699 YVTTYDSYLMKNKKNKIQKVYCDEVFMVHAGEWIACMNLIENDYVRCYGDKNQIPFINRV 1758
Query: 248 PSFVFR---HHKLTGKVERKLITWRSPADATYCL--------EKYFYKNKRPVKTNSRVL 394
P+ L ++ +++R P D Y L K + P NS++L
Sbjct: 1759 PNTTCHLSFDLYLKFQMIHDNVSYRCPVDVCYLLSNLTDPIGNKLYPNGVYPAGDNSKIL 1818
Query: 395 RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT--HLKGCDNIFTTHEAQGKTFDN 568
RS++VV IN ++ + Y+ TQ EK + T +K T +E QG TF
Sbjct: 1819 RSVDVVGINCAEDLKPDEKKKYITFTQYEKEEVSKITGKKMKVSGTANTVNEVQGGTFPK 1878
Query: 569 V 571
V
Sbjct: 1879 V 1879
[224][TOP]
>UniRef100_Q2A077 Methyltransferase/helicase protein (Fragment) n=1 Tax=Grapevine
leafroll associated virus 9 RepID=Q2A077_9VIRU
Length = 2045
Score = 76.6 bits (187), Expect = 1e-12
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 26/216 (12%)
Frame = +2
Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSA---SAVKAQRLIFDECFLQHAGLVYA 172
S+R++A+ L E D K + T DS++ S S+ + ++ DEC++ HAGL
Sbjct: 1768 SSRNAAESLNEFWDSEICNKKVVVMTVDSFVFSGGRFSSKNVETVLIDECYMSHAGLCIL 1827
Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSF--VFRHHKLTGKV-ERKLITWRSPADATYCLE 343
A S + +GD Q+PF++RNP F K G + KL+++R PAD Y +
Sbjct: 1828 IAAATNPSSLSFYGDRRQVPFINRNPIFRDTMGMLKTAGNLYTEKLLSFRCPADICYWMS 1887
Query: 344 KY--------FYKNKRPVKTNSRVLRSIEVVP-----INSPVSVERNTNALYLCHTQAEK 484
Y K +SR L+S+ ++P +N V+R + TQ EK
Sbjct: 1888 TVDYLKPGGRLYSGKVTTVKDSRPLKSVSIMPFSPDQLNFMKKVDR-----VMTFTQMEK 1942
Query: 485 AVLKAQTHLKGCDN-------IFTTHEAQGKTFDNV 571
A + ++ G + I T E+QG+T+ V
Sbjct: 1943 ADMISKFLSAGFGDREEANQLIGTVAESQGETYARV 1978
[225][TOP]
>UniRef100_Q0E5F1 Replicase large subunit n=2 Tax=Brugmansia mild mottle virus
RepID=Q0E5F1_9VIRU
Length = 1612
Score = 76.6 bits (187), Expect = 1e-12
Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAV---KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
++T DS+LM+ + + L DE + H G V +L C FGDT+QIP+++
Sbjct: 881 VKTVDSFLMNLGKKPLGRVENLFIDEGLMLHPGCVNFLVSLTMCDRAFVFGDTQQIPYIN 940
Query: 242 RNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE-- 406
R +F + H T +VE + +T R PAD T+ L + + V +S V +S+
Sbjct: 941 RVQNFPYPKHFATLEVDEVETRRVTMRCPADVTHFLNERY---SGTVMCSSGVQKSVSSE 997
Query: 407 -VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+V S + + L TQ++K L +G +++ T HE QG+T+++V
Sbjct: 998 ILVGAGSVNPITKPLKGKILTFTQSDKFALTE----RGYEDVNTVHEVQGETYEDV 1049
[226][TOP]
>UniRef100_O89906 Fusion protein n=1 Tax=Beet yellows virus RepID=O89906_9CLOS
Length = 3070
Score = 76.6 bits (187), Expect = 1e-12
Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 22/212 (10%)
Frame = +2
Query: 2 SNRSSADELKETIDC-------SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAG 160
+N+SS +E+ ++ +PL I T DSYLM+ + + L DECF+ HAG
Sbjct: 2277 ANKSSREEILAKVNRIVLDEGDTPLQTRDRILTIDSYLMNNRGLTCKVLYLDECFMVHAG 2336
Query: 161 LVYAAATLAGCSEVIGFGDTEQIPFVSRNP----------SFVFRHHKLTGKVERKLITW 310
A C I FGD+ QI ++ RN FV ++ G+V ++
Sbjct: 2337 AAVACIEFTKCDSAILFGDSRQIHYIDRNELDTAVLSDLNRFVDDESRVYGEV-----SY 2391
Query: 311 RSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAV 490
R P D L ++ K S S++V I S VE ++ +YL Q+EK
Sbjct: 2392 RCPWDVCAWLSTFYPKTVATTNLVSAGQSSMQVREIESVDDVEYSSEFVYLTMLQSEKKD 2451
Query: 491 L-----KAQTHLKGCDNIFTTHEAQGKTFDNV 571
L K + T HEAQG+T+ V
Sbjct: 2452 LLKSFGKRSRSSVEKPTVLTVHEAQGETYRKV 2483
[227][TOP]
>UniRef100_A3FG29 Replicase large subunit n=2 Tax=Rehmannia mosaic virus
RepID=A3FG29_9VIRU
Length = 1616
Score = 76.6 bits (187), Expect = 1e-12
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
Frame = +2
Query: 71 IRTCDSYLMSASAV---KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
+RT DS++M+ V + +RL DE + H G V +++ C +GDT+QIP+++
Sbjct: 882 VRTVDSFMMNYGKVARCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYVYGDTQQIPYIN 941
Query: 242 RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
R F + H KL +VE + T R PAD T+ L K + + V + S V RS+
Sbjct: 942 RVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKRSVSQE 998
Query: 413 PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
++ ++ + L+ L TQ++K L + +G ++ T HE QG+T+ +V
Sbjct: 999 MVSGAATINPISKPLHGKVLTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDV 1050
[228][TOP]
>UniRef100_Q88604 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=Q88604_9VIRU
Length = 1601
Score = 76.3 bits (186), Expect = 2e-12
Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+ T DS+LM S +RL DE + H G V L+ C +GDT+QIPF+ R
Sbjct: 876 VSTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPFICRVA 935
Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H + + E + +T R PAD TY L K K V S V RS++ +
Sbjct: 936 NFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVR 992
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
++ T L L TQA+K L KG ++ T HE QG+T++
Sbjct: 993 GKGALNPITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYE 1039
[229][TOP]
>UniRef100_Q65716 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65716_BSMV
Length = 1138
Score = 76.3 bits (186), Expect = 2e-12
Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 23/211 (10%)
Frame = +2
Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
R++ D+L+E + + T H +RT DS L++ +A R FDE H G +
Sbjct: 863 RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 922
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337
A G SE++ GD Q+P + R F+ T + KL ++R P D A Y
Sbjct: 923 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 982
Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
K FYK K + V T + V RS+ +P V V +NT+ YL QAEK
Sbjct: 983 SAKEFYKVKGIPQKVTTFNSVKRSLYARGETTPERFVSLLDVPVRKNTH--YLTFLQAEK 1040
Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
L + KG ++I T HEAQG T++NV
Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071
[230][TOP]
>UniRef100_A0PA59 Replicase large subunit n=2 Tax=Youcai mosaic virus
RepID=A0PA59_9VIRU
Length = 1596
Score = 76.3 bits (186), Expect = 2e-12
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM + +RL DE + H G V L+ C +GDT+QIPF+ R
Sbjct: 872 VRTVDSFLMHPPKREFKRLFIDEGLMLHTGCVNFLTLLSHCEVAYVYGDTQQIPFICRVA 931
Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H + + E + +T R PAD T+ L K K V S V RS+ +
Sbjct: 932 NFPYPKHFAKLVVDEKEDRRVTLRCPADVTFFLNK---KYDGAVLCTSSVERSVSAEVVR 988
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
++ T L L TQA+K L KG ++ T HE QG+T++
Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035
[231][TOP]
>UniRef100_B2LS13 Replicase large subunit n=2 Tax=Chinese Rape Mosaic Virus
RepID=B2LS13_YOMV
Length = 1596
Score = 75.9 bits (185), Expect = 2e-12
Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +RL DE + H G V L+ C +GDT+QIPF+ R
Sbjct: 871 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 930
Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H + + E + IT R PAD TY L + K V S V RS+ +
Sbjct: 931 NFPYPSHFAKLVVDEKEDRRITLRCPADVTYFLNQ---KYDGAVMCTSSVERSVSAEVVR 987
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
++ T L L TQA+K L KG ++ T HE QG+T++
Sbjct: 988 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1034
[232][TOP]
>UniRef100_Q65714 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65714_BSMV
Length = 1139
Score = 75.1 bits (183), Expect = 4e-12
Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Frame = +2
Query: 8 RSSADELKETID----CSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
R++ D+L+E + T H +RT DS L++ + +A R FDE H G +
Sbjct: 864 RNATDDLRERFKRKKHLNSKTANHRVRTLDSLLLAEGSCVPQADRFHFDEALKVHYGAIM 923
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337
A G SE++ GD Q+P + R F+ T + KL ++R P D A Y
Sbjct: 924 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 983
Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
K FYK K + V T++ V RS+ +P V V ++T+ YL QAEK
Sbjct: 984 SAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKDTH--YLTFLQAEK 1041
Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
L + KG ++I T HEAQG T++NV
Sbjct: 1042 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1072
[233][TOP]
>UniRef100_P17595 Alpha-A protein n=1 Tax=Barley stripe mosaic virus RepID=VRNA_BSMV
Length = 1139
Score = 75.1 bits (183), Expect = 4e-12
Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Frame = +2
Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
R++ D+L+E + + T H +RT DS L++ +A R FDE H G +
Sbjct: 864 RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 923
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337
A G SE++ GD Q+P + R F+ T + KL ++R P D A Y
Sbjct: 924 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 983
Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
K FYK K + V T++ V RS+ +P V V ++T+ YL QAEK
Sbjct: 984 SAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKDTH--YLTFLQAEK 1041
Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
L + KG ++I T HEAQG T++NV
Sbjct: 1042 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1072
[234][TOP]
>UniRef100_Q84687 Orf1 protein n=2 Tax=Peanut clump virus RepID=Q84687_9VIRU
Length = 1145
Score = 74.7 bits (182), Expect = 5e-12
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT S+++ + + FDE + HAG++Y + EVI GD++QIPF++R
Sbjct: 906 VRTVHSFMLKPLSRRFNSFHFDEALMAHAGMIYICGRMLNAREVICQGDSKQIPFINRVE 965
Query: 251 SFVFRHHKLTGKVERKLI--TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP--- 415
++ VER+ + T+R P D Y L K Y + S+ S++
Sbjct: 966 QISLKYSSF-NVVEREHVRKTYRCPLDIVYYLNKKKYYRGDDIVGYSKTTHSVDTKSKSS 1024
Query: 416 -INSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
S V + + YL QAEK V K +KG + T HEAQGKTF+ V
Sbjct: 1025 GFTSLVKLPKEP-VHYLTFLQAEKEEVSKHLAGVKGA-TVSTVHEAQGKTFERV 1076
[235][TOP]
>UniRef100_Q85077 Alpha-A protein; N-terminal region (Fragment) n=1 Tax=Poa
semilatent virus RepID=Q85077_9VIRU
Length = 478
Score = 74.7 bits (182), Expect = 5e-12
Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 19/207 (9%)
Frame = +2
Query: 8 RSSADELKETIDCSPLTK----LHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
R++ D+L+ L L +RT DS L++ + K Q+ FDE H G +
Sbjct: 204 RNAMDDLRNKFQKKKLVSKKLSLSRVRTMDSLLLADKDNVPKCQKFHFDEALKVHYGAIL 263
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
A G +E+I GD Q+P + R + + + KL+++R P D + L
Sbjct: 264 FCADRLGATEIIAQGDRAQLPMICRVEGIDLHYTRPDFSRIVISPKLLSYRIPGDVAFYL 323
Query: 341 EKYFYKN--KRPVKTNSRVLRSI----EVVP--INSPVSVERNTNALYLCHTQAEKAVLK 496
Y N + + T ++V RS+ E P S + V + YLC QAEK L
Sbjct: 324 SARGYYNGVAQTITTKNKVERSMFARGETTPERFISLLDVPVRRDVQYLCFMQAEKESLI 383
Query: 497 AQTHLKGC--DNIFTTHEAQGKTFDNV 571
A KG ++I T HE+QG TFD+V
Sbjct: 384 AYLVPKGVKKESIATIHESQGGTFDHV 410
[236][TOP]
>UniRef100_Q84125 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q84125_9VIRU
Length = 1596
Score = 74.7 bits (182), Expect = 5e-12
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 8/175 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R
Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934
Query: 251 SFVF-RH--HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + +H H + E + ++ R PAD T+ + + + + + TN V+RS++ +
Sbjct: 935 NFPYPKHFGHTCLHRREVRRLSLRCPADVTHFMNSKY--DGKFLCTND-VIRSVDAEVVR 991
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ L + TQ++KA L + + I T HE QG+TF++V
Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDV 1046
[237][TOP]
>UniRef100_O10447 Replicase large subunit n=1 Tax=Odontoglossum ringspot virus
RepID=O10447_9VIRU
Length = 1612
Score = 74.7 bits (182), Expect = 5e-12
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R
Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934
Query: 251 SFVF-RH--HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + +H H E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 935 NFPYPKHFGHTCLHHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ L + TQ++KA L + + I T HE QG+TF++V
Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDV 1046
[238][TOP]
>UniRef100_A0MBW3 Polyprotein 1a n=1 Tax=Raspberry leaf mottle virus RepID=A0MBW3_9CLOS
Length = 2819
Score = 74.7 bits (182), Expect = 5e-12
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
Frame = +2
Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
T DSYLM + K+ ++ DECF+ HAG V A T G S + +GD+ QI ++ RN
Sbjct: 2496 TVDSYLMHHAYTKSHVVLIDECFMVHAGAVCAVLTFTGASLAVLYGDSRQIHYIHRNDLG 2555
Query: 257 VFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+ H + + +++R P D L + + + + S S+ V I+
Sbjct: 2556 LSLLHDINNFLSDDSRVYGNVSYRCPWDVCAWLSEIYPTRIQSMNEKSAGTSSMSVTEIS 2615
Query: 422 SPVSVERNTNALYLCHTQAEK-------AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
V + Y+ +TQ EK AV ++ K + T HE QG TF +V
Sbjct: 2616 CVEDVPLDQKFKYITYTQGEKRDLSKHLAVRATASNCKKVPEVNTVHEVQGDTFAHV 2672
[239][TOP]
>UniRef100_Q8V9A6 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q8V9A6_9VIRU
Length = 1597
Score = 74.3 bits (181), Expect = 6e-12
Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +RL DE + H G V ++ C +GDT+QIPF+ R
Sbjct: 872 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVA 931
Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H + + E + IT R PAD T+ L K K V S V RS+ +
Sbjct: 932 NFPYPKHFARLVVDEKEDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVR 988
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
++ T L L TQA+K L KG ++ T HE QG+T++
Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035
[240][TOP]
>UniRef100_Q70PI7 Polyprotein n=2 Tax=Potato yellow vein virus RepID=Q70PI7_9CLOS
Length = 2475
Score = 74.3 bits (181), Expect = 6e-12
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
Frame = +2
Query: 68 YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247
Y+RT D+ L+ +K L DECF+ H+G A + + +GD QIP+++R
Sbjct: 1723 YVRTYDAVLIKVGRMKLGVLYCDECFMIHSGQFVAVTEIITADRMELYGDKNQIPYLNRV 1782
Query: 248 P---SFVFRHHKLTGKVERKLITWRSPADATYCL--------EKYFYKNKRPVKTNSRVL 394
P S +H L + ++R P D Y L E + K + V N+ +L
Sbjct: 1783 PNTTSLYSFNHFLQYDMVHDDKSYRCPPDVCYILSNLRNSSGELLYPKGVKSVNKNANIL 1842
Query: 395 RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGCDNIFTTHEAQGKTFDN 568
RS+EV+ +S ++ Y+ TQ EK + + K D T +E QG TF
Sbjct: 1843 RSMEVLKFDSVNDLDGEAGRKYVTFTQPEKEEISRIVSRNKKESDTANTVNEVQGGTFKT 1902
Query: 569 V 571
V
Sbjct: 1903 V 1903
[241][TOP]
>UniRef100_Q91PA8 Replicase large subunit n=2 Tax=Ribgrass mosaic virus
RepID=Q91PA8_RMV
Length = 1597
Score = 73.9 bits (180), Expect = 8e-12
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +RL DE + H G V L+ C +GDT+QIPF+ R
Sbjct: 872 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 931
Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H + + E + +T R PAD TY L + V S V RS+ +
Sbjct: 932 NFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVR 988
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
++ T L L TQA+K L KG ++ T HE QG+T++
Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035
[242][TOP]
>UniRef100_Q7TD02 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q7TD02_9VIRU
Length = 1597
Score = 73.9 bits (180), Expect = 8e-12
Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS+LM +RL DE + H G V L+ C +GDT+QIPF+ R
Sbjct: 872 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 931
Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H + + E + +T R PAD TY L + V S V RS+ +
Sbjct: 932 NFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVR 988
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
++ T L L TQA+K L KG ++ T HE QG+T++
Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035
[243][TOP]
>UniRef100_Q65853 Helicase (Fragment) n=1 Tax=Beet yellow stunt virus
RepID=Q65853_9CLOS
Length = 710
Score = 73.9 bits (180), Expect = 8e-12
Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 6/173 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+ T DSYLM+ K L DECF+ HAG V A + V GD+ QI + RN
Sbjct: 391 VYTIDSYLMNHLGTKCDVLFVDECFMVHAGAVTAVSNTLVPRSVFFVGDSRQIHHIERNE 450
Query: 251 SFVFRHHKLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
V L V K +++R P D L K++ S S+ +
Sbjct: 451 YDVASFSDLDRLVAAKDRIYGQVSYRCPWDVCGWLSKHYPNTVATTNVESEGKSSLTITE 510
Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNV 571
INS V + YL Q+EK L+ KG + T HEAQG T+ +V
Sbjct: 511 INSVDDVVASKRNTYLTFLQSEKKELEKHLAKKGVKATVKTVHEAQGDTYRDV 563
[244][TOP]
>UniRef100_A3RF53 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=A3RF53_9VIRU
Length = 1616
Score = 73.6 bits (179), Expect = 1e-11
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Frame = +2
Query: 71 IRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
+RT DS++M+ + + +RL DE + H G V +++ C +GDT+QIP+++
Sbjct: 882 VRTVDSFMMNYGKGTRCQFKRLFIDEGLMLHTGCVNFLVSMSLCDIAYVYGDTQQIPYIN 941
Query: 242 RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
R F + H K+ +VE + T R PAD T+ L K + + V + S V +S+
Sbjct: 942 RVSGFPYPAHFSKIEVDEVETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKKSVSQE 998
Query: 413 PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
++ ++ + L+ L TQ++K L + +G + T HE QG+T+ +V
Sbjct: 999 MVSGAATINPVSKPLHGKILTFTQSDKEALLS----RGYSEVHTVHEVQGETYSDV 1050
[245][TOP]
>UniRef100_Q8V9A2 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q8V9A2_9VIRU
Length = 1597
Score = 73.2 bits (178), Expect = 1e-11
Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
++T DS+LM +RL DE + H G V ++ C +GDT+QIPF+ R
Sbjct: 872 VKTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVA 931
Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + H + + E + IT R PAD T+ L K K V S V RS+ +
Sbjct: 932 NFPYPKHFARLVVDEKEDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVR 988
Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
++ T L L TQA+K L KG ++ T HE QG+T++
Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035
[246][TOP]
>UniRef100_Q82718 Methyltransferase n=2 Tax=Indian peanut clump virus
RepID=Q82718_9VIRU
Length = 1130
Score = 72.8 bits (177), Expect = 2e-11
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT S+++ FDE + HAG++Y + EVI GD++QIPF++R
Sbjct: 891 VRTVHSFMLKPLTRGFNSFHFDEALMAHAGMIYICGRMLRAREVICQGDSKQIPFINRVE 950
Query: 251 SFVFRHHKLTGKVERKLI--TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP--- 415
R+ VER+ + T+R P D Y L K Y + S+ S++
Sbjct: 951 QITLRYASF-NVVEREYVRKTYRCPLDVIYYLNKKRYYQGDDIVGFSKTTHSVDTKSKTS 1009
Query: 416 -INSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
S V + + YL QAEK V K +KG + T HEAQGKTF+ V
Sbjct: 1010 GFTSLVKLPKEP-VHYLTFLQAEKEEVAKHLAGVKGA-TVSTIHEAQGKTFECV 1061
[247][TOP]
>UniRef100_Q65713 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65713_BSMV
Length = 1138
Score = 72.8 bits (177), Expect = 2e-11
Identities = 67/211 (31%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
Frame = +2
Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
R++ D+L+E + + H +RT DS L++ +A RL FDE H G +
Sbjct: 863 RNATDDLRERFKRKKNLNSKIANHRVRTLDSLLLAEGPCVPQADRLHFDEALKVHYGAIM 922
Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPAD-ATYC 337
A G SE++ GD Q+P + R + + KL ++R P D A Y
Sbjct: 923 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYSKTIINPKLRSYRIPGDVAFYL 982
Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
K FYK K + V T + V RS+ +P V V ++T+ YL QAEK
Sbjct: 983 SAKEFYKVKGIPQKVTTFNSVKRSMYARGETTPDRFVSLLDVPVRKDTH--YLTFLQAEK 1040
Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
L + KG ++I T HEAQG T++NV
Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071
[248][TOP]
>UniRef100_B2BZW0 ORF1a n=2 Tax=Bean yellow disorder virus RepID=B2BZW0_9CLOS
Length = 2021
Score = 72.8 bits (177), Expect = 2e-11
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+ T DS LM+A R+ DE F+ HAG A +L + + +GD QIP+++R
Sbjct: 1775 VYTYDSVLMTAIGANVDRVYCDEVFMVHAGEWAAVMSLFNTNYIRCYGDRNQIPYINRVA 1834
Query: 251 SFVFRHHK---LTGKVERKLITWRSPADATYCLEK--------YFYKNKRPVKTNSRVLR 397
+ R K L+ K I++R P D Y L + + P N V+R
Sbjct: 1835 HTICRFSKDLYLSFKTIDDNISYRCPVDVCYLLSTLKDEAGNLLYPRGVFPAGDNRNVMR 1894
Query: 398 SIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
S+++ PI+S + + + T+ E+ + A G ++ T HE QG TF V
Sbjct: 1895 SMDIEPISSVYDIHHDITGKCISFTRPERDEVDASMQRAGIIGQSVQTVHEVQGGTFPRV 1954
Query: 572 Y 574
+
Sbjct: 1955 F 1955
[249][TOP]
>UniRef100_P30738 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain Korean)
RepID=RDRP_TMVKR
Length = 1616
Score = 72.8 bits (177), Expect = 2e-11
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
Frame = +2
Query: 71 IRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
++T DS++M+ ++ + +RL DE + H G V T++ C +GDT+QIP+++
Sbjct: 882 VKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVTMSLCEIAYVYGDTQQIPYIN 941
Query: 242 RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
R F + H KL +VE + T R PAD T+ L + + + V + S V +S+
Sbjct: 942 RVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQE 998
Query: 413 PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
+ + + L+ L TQ++K L + +G ++ T HE QG+T+ +V
Sbjct: 999 MVGGAAVINPISKPLHGKILTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDV 1050
[250][TOP]
>UniRef100_Q911R4 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus
RepID=Q911R4_9VIRU
Length = 1670
Score = 72.4 bits (176), Expect = 2e-11
Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Frame = +2
Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
+RT DS++M+ + L DE + H GL+ ++ SEV FGDT+QIPF++R
Sbjct: 935 VRTFDSFVMNLKPYNFKTLWVDEGLMVHTGLLNFCVNISKVSEVKIFGDTKQIPFINRVM 994
Query: 251 SFVF---RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
+F + + VE++ + R P D T+ L + + PV T+S V+ S+ I
Sbjct: 995 NFDYPLELKKIIVDNVEKRYTSKRCPRDVTHYLNEVY---AAPVTTSSAVVHSVSQKKI- 1050
Query: 422 SPVSVER----NTNALYLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDN 568
+ V + R N + TQ++K QT LK G ++ T HE QG+T+++
Sbjct: 1051 AGVGLLRPELTNLEGKIITFTQSDK-----QTLLKAGYQDVNTVHEVQGETYES 1099