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[1][TOP] >UniRef100_P03589 Methyltransferase n=1 Tax=Alfalfa mosaic virus (strain 425 / isolate Leiden) RepID=ORF1A_AMVLE Length = 1126 Score = 392 bits (1006), Expect = e-107 Identities = 191/192 (99%), Positives = 192/192 (100%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT Sbjct: 865 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 924 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN Sbjct: 925 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 984 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K+PVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH Sbjct: 985 KKPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 1044 Query: 542 EAQGKTFDNVYF 577 EAQGKTFDNVYF Sbjct: 1045 EAQGKTFDNVYF 1056 [2][TOP] >UniRef100_P89033 Putative viral replicase n=1 Tax=Prune dwarf virus RepID=P89033_9BROM Length = 1055 Score = 228 bits (580), Expect = 3e-58 Identities = 112/192 (58%), Positives = 143/192 (74%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSSA ELKE ++ S L K +IRTCDSYLM+ +A KA++++FDECF+QHAG++YAAAT Sbjct: 797 SNRSSAIELKEAVEGSQLVKSRFIRTCDSYLMTNNAPKAKKMLFDECFMQHAGVIYAAAT 856 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 +AG SEVI FGDTEQIPF+SRN F+ +HH L G ++ IT+R+PAD Y L K+FY+ Sbjct: 857 IAGVSEVIAFGDTEQIPFISRNDMFLLKHHVLKGDHVKQTITYRNPADTVYALSKFFYRK 916 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K PVKT +LRSI+V PIN+ VE + +A+Y+ HTQAEKA L A K C I+TTH Sbjct: 917 KTPVKTKRHILRSIKVKPINALSQVEVDASAVYVTHTQAEKASLLATPSFKSC-KIYTTH 975 Query: 542 EAQGKTFDNVYF 577 E QG +FD V F Sbjct: 976 EVQGGSFDKVIF 987 [3][TOP] >UniRef100_C7T303 p1 protein n=1 Tax=Parietaria mottle virus RepID=C7T303_9BROM Length = 1097 Score = 203 bits (516), Expect = 9e-51 Identities = 110/193 (56%), Positives = 137/193 (70%), Gaps = 1/193 (0%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSS+DELKE + C K + IRT DSYLM S A R++FDECFL HAG VYAAAT Sbjct: 838 SNRSSSDELKEALTCPDAMK-YRIRTVDSYLMLKSWFSASRMLFDECFLTHAGCVYAAAT 896 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA SEVI GDTEQ+PF+SR P F +HHKL+G++E + T+R P DATYCL+ FYKN Sbjct: 897 LAQVSEVIALGDTEQVPFISRLPEFRMQHHKLSGEIETQTTTYRCPRDATYCLKSMFYKN 956 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538 K VK+ S V RSIE+VPI+SP+ + + LY+ HT+A+K A+LK K +NI TT Sbjct: 957 K-SVKSASVVERSIELVPISSPIQIPCENDVLYITHTRADKDALLKIPGFKK--ENIKTT 1013 Query: 539 HEAQGKTFDNVYF 577 HEAQG T+D V + Sbjct: 1014 HEAQGDTWDKVVY 1026 [4][TOP] >UniRef100_Q6RK14 P1 protein n=1 Tax=Parietaria mottle virus RepID=Q6RK14_9BROM Length = 1098 Score = 202 bits (515), Expect = 1e-50 Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSS+DELKE + C K + IRT DSYLM S A R++FDECFL HAG VYAAAT Sbjct: 839 SNRSSSDELKEALTCPEAMK-YRIRTVDSYLMLKSWFSASRMLFDECFLTHAGCVYAAAT 897 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA SEVI GDTEQ+PF+SR P F +HHKL+G++E + T+R P DATYCL+ FYKN Sbjct: 898 LAQVSEVIALGDTEQVPFISRLPEFRMQHHKLSGEIETQTTTYRCPRDATYCLKSMFYKN 957 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538 K VKT S V RSI++VPI+SP+ + + LY+ HT+A+K A+LK K +NI TT Sbjct: 958 K-SVKTASVVERSIDLVPISSPIQIPCENDVLYITHTRADKDALLKIPGFKK--ENIKTT 1014 Query: 539 HEAQGKTFDNV 571 HEAQG T+D V Sbjct: 1015 HEAQGDTWDKV 1025 [5][TOP] >UniRef100_Q2PMD3 Replicase n=1 Tax=Strawberry necrotic shock virus RepID=Q2PMD3_9BROM Length = 1090 Score = 202 bits (515), Expect = 1e-50 Identities = 109/191 (57%), Positives = 137/191 (71%), Gaps = 1/191 (0%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSS+DELK TI+C+ K + IRT DSYLM + + RL+FDECFL HAG +YAAAT Sbjct: 830 SNRSSSDELKSTINCAEAMK-YRIRTVDSYLMLKTWFSSDRLLFDECFLTHAGCIYAAAT 888 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI GDTEQ+PF+SR P F +HHKL G +E + T+R P DAT CL+ +FYK Sbjct: 889 LAQVKEVIALGDTEQVPFISRLPEFRVQHHKLCGNIEVQTTTYRCPRDATACLKNFFYK- 947 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538 K+ VK+ SRV RS+E+ PINS V + R N LY+ HT+A+K A++K +K DNI TT Sbjct: 948 KKTVKSASRVERSLELCPINSAVQIPRVENTLYMTHTRADKDALMKIPGFVK--DNIKTT 1005 Query: 539 HEAQGKTFDNV 571 HEAQG T+DNV Sbjct: 1006 HEAQGDTWDNV 1016 [6][TOP] >UniRef100_B9VV81 p1 protein (Fragment) n=1 Tax=Bacopa chlorosis virus RepID=B9VV81_9BROM Length = 1054 Score = 202 bits (514), Expect = 2e-50 Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSSADELKET+ CS K + IRT DS+LM + A RL+FDECFL HAG VYAAA+ Sbjct: 837 SNRSSADELKETLTCSDAMK-YRIRTVDSFLMLKNWFSADRLLFDECFLTHAGCVYAAAS 895 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI GDTEQ+PF+SR P F +HHKL+GK+E + T+R P DATYCL+ FYK Sbjct: 896 LAQVKEVIALGDTEQVPFISRLPEFRMQHHKLSGKIECQTTTYRCPRDATYCLKTQFYKT 955 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538 K VKT S V RSI+++PI+SP+ + N LY+ HT+A+K A++K K NI TT Sbjct: 956 K-SVKTASVVERSIDLIPISSPIQIPCEDNVLYITHTRADKDALMKIPGFNK--SNIKTT 1012 Query: 539 HEAQGKTFDNV 571 HEAQG T+DNV Sbjct: 1013 HEAQGDTWDNV 1023 [7][TOP] >UniRef100_Q2QF35 Replicase n=1 Tax=Blackberry chlorotic ringspot virus RepID=Q2QF35_9BROM Length = 1093 Score = 199 bits (505), Expect = 2e-49 Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSS+DELK+TIDC+ K + IRT DSYLM S + RL+FDECFL HAG VYAAAT Sbjct: 833 SNRSSSDELKDTIDCAEAMK-YRIRTVDSYLMLKSWFSSDRLLFDECFLTHAGCVYAAAT 891 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI GDTEQ+PF+SR P F ++HKL GK+E + T+R P DAT CL+ +FYK Sbjct: 892 LAQVKEVIALGDTEQVPFISRLPEFKVQYHKLCGKIEVQTTTYRCPRDATACLKTFFYKR 951 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538 K VK+ SRV RS+E+ PINS V + N LY+ HT+A+K A++K K +NI TT Sbjct: 952 K-TVKSASRVDRSLELCPINSAVQIPCVENTLYMTHTRADKDALMKIPGFNK--NNIKTT 1008 Query: 539 HEAQGKTFDNV 571 HEAQG T+DNV Sbjct: 1009 HEAQGDTWDNV 1019 [8][TOP] >UniRef100_B7TX62 Replicase n=1 Tax=Tobacco streak virus RepID=B7TX62_9BROM Length = 1094 Score = 199 bits (505), Expect = 2e-49 Identities = 106/190 (55%), Positives = 134/190 (70%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSS+DELKE IDC + K + IRT DSYLM S A+RL+FDECFL HAG VYAAAT Sbjct: 836 SNRSSSDELKEVIDCPDVMK-YRIRTVDSYLMLKSWFSAERLLFDECFLTHAGCVYAAAT 894 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI FGDTEQ+PF+SR P F HHK+ GK++ + T+R P DAT CL+K+FYKN Sbjct: 895 LAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKIDVQTTTYRCPRDATACLKKFFYKN 954 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K VK+ S V RS+E+ PI S + ++ + LY+ HT+A+K L + D I TTH Sbjct: 955 K-TVKSASVVDRSLELCPIQSVIQIQPERDVLYMTHTRADKETLMRIPGMPK-DRIKTTH 1012 Query: 542 EAQGKTFDNV 571 EAQG+T+D+V Sbjct: 1013 EAQGETWDHV 1022 [9][TOP] >UniRef100_Q5QDM5 Replicase n=1 Tax=Fragaria chiloensis latent virus RepID=Q5QDM5_9BROM Length = 1083 Score = 198 bits (504), Expect = 2e-49 Identities = 99/192 (51%), Positives = 131/192 (68%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSSA++L I + + K Y+RTCDS+LM+ S A+++ FDECF+QHAG +YAAAT Sbjct: 815 SNRSSAEDLSIKIPGTRIVKSRYVRTCDSFLMTNSPPTAKKMFFDECFMQHAGCIYAAAT 874 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA CSEV +GD EQIPF+SR S F H KL GKV ++L+T+R P DAT L K+ YK Sbjct: 875 LARCSEVYAYGDKEQIPFISRCDSIRFTHEKLEGKVVQQLVTYRCPVDATAALSKFLYKK 934 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K+ + T V RSI +VPIN+ +E + A+Y+ HTQAEK L++ +F+TH Sbjct: 935 KKNIVTRRNVDRSISIVPINAVSQIEIDDKAVYITHTQAEKKALQSADGFSRM-KVFSTH 993 Query: 542 EAQGKTFDNVYF 577 EA+G TFD VYF Sbjct: 994 EAEGGTFDKVYF 1005 [10][TOP] >UniRef100_Q6JE42 Replicase n=1 Tax=Humulus japonicus latent virus RepID=Q6JE42_9BROM Length = 1041 Score = 195 bits (496), Expect = 2e-48 Identities = 101/191 (52%), Positives = 135/191 (70%), Gaps = 1/191 (0%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNR+++ EL+E I SPL K Y+RTCDSYLM++ KA+RL+FDECF++HAG VYAAAT Sbjct: 784 SNRNASIELREVIKASPLMKAKYVRTCDSYLMASRPEKARRLLFDECFMRHAGFVYAAAT 843 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA C EV+ +GDTEQIP +SRNP+F FR HKL G++ ++ +T+R PADA Y L K+FYK Sbjct: 844 LAECEEVLAYGDTEQIPEISRNPAFKFRCHKLEGEIVQQTVTYRCPADAVYVLNKHFYKT 903 Query: 362 KRPVKT-NSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538 KR +KT +RS+ + INS +V + +ALYL +TQAEK LK+ G + T Sbjct: 904 KRNIKTKRHNPMRSLNIHAINSVRAVPVDKSALYLTYTQAEKEQLKSA--FPGV-KVLTV 960 Query: 539 HEAQGKTFDNV 571 HEA+G + V Sbjct: 961 HEAEGASVPKV 971 [11][TOP] >UniRef100_Q997A4 Putative viral replicase p1 n=1 Tax=American plum line pattern virus RepID=Q997A4_9BROM Length = 1062 Score = 176 bits (446), Expect = 1e-42 Identities = 96/193 (49%), Positives = 126/193 (65%), Gaps = 1/193 (0%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNR+SA+EL+ + S L K IRT DSYLM+ + A + FDECFLQH+G++ AA T Sbjct: 794 SNRNSAEELRSKVRGSQLVKSRVIRTVDSYLMAKNPPTADVVYFDECFLQHSGVILAAVT 853 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-LITWRSPADATYCLEKYFYK 358 LA ++ FGDTEQIPF+SRNP F F+H LT + L T+RSPADAT+ L KYFYK Sbjct: 854 LAKAKKLYAFGDTEQIPFISRNPLFRFKHRFLTSNRRIECLDTFRSPADATFLLGKYFYK 913 Query: 359 NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538 K +KT SRV SI V PI+ +E + +A+Y C+ QAEKA L ++ K + + T Sbjct: 914 KKSQIKTTSRVQPSISVKPISVHDQIEVDKSAIYCCYIQAEKAELLSKPQFKNME-VATI 972 Query: 539 HEAQGKTFDNVYF 577 HE QG++ D V F Sbjct: 973 HEKQGESVDKVIF 985 [12][TOP] >UniRef100_Q9QGH0 Putative methyltransferase/helicase n=1 Tax=Apple mosaic virus RepID=Q9QGH0_9BROM Length = 1046 Score = 172 bits (435), Expect = 2e-41 Identities = 100/193 (51%), Positives = 131/193 (67%), Gaps = 1/193 (0%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSSA EL+E + SPL+K +RTCDS+LM+ S +K++R+IFDECFLQHAG VYAAAT Sbjct: 785 SNRSSAMELREKLVGSPLSKSQRVRTCDSFLMNGSKIKSKRIIFDECFLQHAGCVYAAAT 844 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVER-KLITWRSPADATYCLEKYFYK 358 +A E++ FGDT+QIPFVSR P R+HK++ R +T+RSPAD T L K+FY Sbjct: 845 IAEAEELVMFGDTQQIPFVSRIPYMKLRNHKVSADERRAHNMTYRSPADTTMALSKWFY- 903 Query: 359 NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538 K+ ++T +R +RS+ V PI S V+ N LY+ HTQAEK L A T + + T+ Sbjct: 904 -KKSIRTANRTIRSMIVKPIVSVNQVD-NDFELYITHTQAEKHTLIA-TGKFDKNKVHTS 960 Query: 539 HEAQGKTFDNVYF 577 EAQG T NV F Sbjct: 961 AEAQGMTERNVAF 973 [13][TOP] >UniRef100_Q99HR1 Viral replicase p1 n=1 Tax=Tulare apple mosaic virus RepID=Q99HR1_9BROM Length = 1060 Score = 165 bits (418), Expect = 2e-39 Identities = 85/190 (44%), Positives = 124/190 (65%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 +NR +A + +E+ + K + +RT DSY+M A+R++ DECFL H+G++YAAAT Sbjct: 803 ANRETAKDARESGSIPDVMK-YRVRTLDSYIMLKKWFTAERMLVDECFLVHSGIIYAAAT 861 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA E+I FGDT+QIPFVSR P+F +H + G ++ KL+T+R P DAT L + FYK Sbjct: 862 LAQVKEIIAFGDTKQIPFVSRIPTFTLKHPSIKGVLKPKLVTYRCPRDATAVLSEKFYKK 921 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K VKT + + S+ ++ INS + + + LY+ HTQA+K + + +N+ TTH Sbjct: 922 K--VKTFNPISSSLSLININSGMEIPAERDTLYIMHTQADKCAMLRHPGI-NANNVMTTH 978 Query: 542 EAQGKTFDNV 571 EAQGKTFDNV Sbjct: 979 EAQGKTFDNV 988 [14][TOP] >UniRef100_B7T2J3 Replicase (Fragment) n=1 Tax=Lilac ring mottle virus RepID=B7T2J3_9BROM Length = 621 Score = 165 bits (418), Expect = 2e-39 Identities = 87/177 (49%), Positives = 117/177 (66%), Gaps = 7/177 (3%) Frame = +2 Query: 62 LHY-IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238 LHY +RT DSYLM + +RL+ DECFL H+G +YAAATLA EV+ FGDT+QIPF+ Sbjct: 374 LHYRVRTLDSYLMMKTWFTGERLLVDECFLVHSGAIYAAATLARVKEVLAFGDTKQIPFI 433 Query: 239 SRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418 SR P+F RH L G ++ + +T+R P DAT LEK+FY KRP+KT S V S+++ PI Sbjct: 434 SRIPTFPIRHASLNGVLKPRNVTFRCPRDATAALEKFFY--KRPIKTASAVSNSMQIHPI 491 Query: 419 NSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN------IFTTHEAQGKTFDNV 571 +S ++V N LY+ HTQA+K L + + C +TH+AQGKT+DNV Sbjct: 492 SSVMNVPVEKNTLYITHTQADKCNLLQRNGINACVTTDECALALSTHKAQGKTYDNV 548 [15][TOP] >UniRef100_Q9IMN1 Replicase 1a (Fragment) n=1 Tax=Hydrangea mosaic virus RepID=Q9IMN1_9BROM Length = 387 Score = 162 bits (410), Expect = 2e-38 Identities = 93/190 (48%), Positives = 121/190 (63%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 +NR +A + K T P T L+ +RT DSYLM + A RL+ DECFL HAGL+YAAAT Sbjct: 130 ANRETAKDAK-TSGVIPETLLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 188 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI FGDT+QIPFVSR P+ RH + GK++ + +T+R P D T L + FY Sbjct: 189 LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGKLKPRTMTYRCPRDVTAVLSEKFYNT 248 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K V T + V S+E++ INS V + +ALY+ HT+A+K LK + D + TTH Sbjct: 249 K--VGTFNPVKTSLELININSGVEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 305 Query: 542 EAQGKTFDNV 571 EAQGKT DNV Sbjct: 306 EAQGKTRDNV 315 [16][TOP] >UniRef100_Q98701 Replicase n=1 Tax=Elm mottle virus RepID=Q98701_9BROM Length = 1055 Score = 162 bits (410), Expect = 2e-38 Identities = 93/190 (48%), Positives = 121/190 (63%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 +NR +A + K T P T L+ +RT DSYLM + A RL+ DECFL HAGL+YAAAT Sbjct: 798 ANRETAKDAK-TSGVIPETLLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 856 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI FGDT+QIPFVSR P+ RH + GK++ + +T+R P D T L + FY Sbjct: 857 LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGKLKPRTMTYRCPRDVTAVLSEKFYNT 916 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K V T + V S+E++ INS V + +ALY+ HT+A+K LK + D + TTH Sbjct: 917 K--VGTFNPVKTSLELININSGVEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 973 Query: 542 EAQGKTFDNV 571 EAQGKT DNV Sbjct: 974 EAQGKTRDNV 983 [17][TOP] >UniRef100_Q91NQ1 Replicase p1 n=1 Tax=Prunus necrotic ringspot virus RepID=Q91NQ1_9BROM Length = 1045 Score = 162 bits (410), Expect = 2e-38 Identities = 99/188 (52%), Positives = 126/188 (67%), Gaps = 2/188 (1%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSSA EL+E + S L + +RT DSYLM+ + R+IFDECFLQHAG VYAAA+ Sbjct: 784 SNRSSAMELREKLPGSQLLRSTRVRTSDSYLMNPKRPSSVRVIFDECFLQHAGCVYAAAS 843 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG--KVERKLITWRSPADATYCLEKYFY 355 LAG E++ FGDT+QIPFVSR P F + H ++ KV L T+R PADAT L K+FY Sbjct: 844 LAGAEELVLFGDTKQIPFVSRIPHFRLKDHLVSADEKVMSNL-TYRCPADATMALSKWFY 902 Query: 356 KNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFT 535 +R VKT + LRS+ V PI S ++R+ + LY+ HTQAEK L A + + D +FT Sbjct: 903 --RRNVKTANTTLRSMSVKPIVSVSQIDRDFD-LYMTHTQAEKHTLIA-SGVVPKDKVFT 958 Query: 536 THEAQGKT 559 T EAQGKT Sbjct: 959 TAEAQGKT 966 [18][TOP] >UniRef100_P89680 Putative viral replicase n=1 Tax=Tobacco streak virus RepID=P89680_9BROM Length = 1094 Score = 158 bits (400), Expect = 3e-37 Identities = 90/190 (47%), Positives = 117/190 (61%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSS+DELKE IDC + K + IRT DSYLM S A+RL+FDECFL HAG VYAAAT Sbjct: 836 SNRSSSDELKEVIDCPDVMK-YRIRTVDSYLMLKSWFSAERLLFDECFLTHAGCVYAAAT 894 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI FGDTEQ+PF+SR P F HHK+ GK+ + + L K + Sbjct: 895 LAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKIS-CTTDHLQMSKRCHSLFKENFLQ 953 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K+ + + R E+ PI S + ++ + LY+ HT+A+K L + D I TTH Sbjct: 954 KQDCEVSERCSSLAELCPIQSVIQIQPERDVLYMTHTRADKETLMRIPGMPK-DRIKTTH 1012 Query: 542 EAQGKTFDNV 571 EAQG+T+D+V Sbjct: 1013 EAQGETWDHV 1022 [19][TOP] >UniRef100_B8RCA3 Replicase n=1 Tax=Asparagus virus 2 RepID=B8RCA3_9BROM Length = 1076 Score = 158 bits (400), Expect = 3e-37 Identities = 92/190 (48%), Positives = 120/190 (63%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 +NR +A + K T P L+ +RT DSYLM + A RL+ DECFL HAGL+YAAAT Sbjct: 798 ANRETAKDAK-TSGVVPDALLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 856 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI FGDT+QIPFVSR P+ RH + G ++ + IT+R P D T L + FY Sbjct: 857 LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGVLKPRTITYRCPRDVTAILSEKFYHT 916 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K VKT + V S++++ INS V + +ALY+ HT+A+K LK + D + TTH Sbjct: 917 K--VKTFNPVKISLDLININSAVEIPVVKDALYITHTKADKFALKKLPGMGNVD-VLTTH 973 Query: 542 EAQGKTFDNV 571 EAQGKT DNV Sbjct: 974 EAQGKTRDNV 983 [20][TOP] >UniRef100_A5JVP4 Putative viral replicase n=1 Tax=Citrus variegation virus RepID=A5JVP4_9BROM Length = 1076 Score = 155 bits (393), Expect = 2e-36 Identities = 88/190 (46%), Positives = 119/190 (62%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 +NR +A + K + P L+ +RT DSYLM + A RL+ DECFL HAGL+YAAA Sbjct: 798 ANRETAKDAKNS-GIIPDALLYRVRTVDSYLMLKNWFTAGRLLVDECFLVHAGLIYAAAA 856 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI FGDT+QIPFVSR P+ RH + G ++ + +T+R P D T L + FY Sbjct: 857 LARVKEVIAFGDTKQIPFVSRIPAVTLRHASVIGTLKPRTVTYRCPRDVTAVLSEKFYNT 916 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K VKT + V S++++ INS + + +ALY+ HT+A+K LK + D + TTH Sbjct: 917 K--VKTFNPVKTSLDLISINSGMEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 973 Query: 542 EAQGKTFDNV 571 EAQGKT DNV Sbjct: 974 EAQGKTRDNV 983 [21][TOP] >UniRef100_Q66108 Citrus leaf rugose ilarvirus putative viral replicase n=1 Tax=Citrus leaf rugose virus RepID=Q66108_9BROM Length = 1051 Score = 155 bits (392), Expect = 2e-36 Identities = 83/190 (43%), Positives = 120/190 (63%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 +NR +A + +E+ + K + +RT DSYLM A RL+ DECFL H+G++YAAAT Sbjct: 789 ANRETARDARESGAIPDVLK-YRVRTLDSYLMLKKWFTADRLLVDECFLVHSGIIYAAAT 847 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 L E+I FGDT+QIPFVSR P+F +H + GK++ K IT+R P DAT L + FY+ Sbjct: 848 LGQVKEIIAFGDTKQIPFVSRIPTFSLKHPSIRGKLKPKTITYRCPRDATAVLSEKFYET 907 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 VKT + S+ ++ I+S + + + LY+ HTQA+K + + DN+ TTH Sbjct: 908 N--VKTFNPTSSSLSLIDISSSMEIPAEKDTLYIMHTQADKCAMLRHPGINP-DNVMTTH 964 Query: 542 EAQGKTFDNV 571 EAQGKTF++V Sbjct: 965 EAQGKTFNHV 974 [22][TOP] >UniRef100_O57161 Putative replicase n=1 Tax=Spinach latent virus RepID=O57161_9BROM Length = 1056 Score = 153 bits (386), Expect = 1e-35 Identities = 88/190 (46%), Positives = 119/190 (62%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 +NR +A++ K + P + +RT DSYLM + A+RL+ DECFL HAGLVYAAAT Sbjct: 799 ANRETANDAKAS-GVIPKALEYRVRTVDSYLMLRTWFTAERLLVDECFLVHAGLVYAAAT 857 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361 LA EVI FGDT+QIPFVSR P+ RH + G ++ + IT+R P D T L + FY Sbjct: 858 LARVKEVIAFGDTKQIPFVSRIPTVKLRHASVVGTLKPRTITYRCPRDVTAVLSEKFYGT 917 Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541 K VKT + V +S+E+ I+S + + LY+ HTQA+K L + G + + TTH Sbjct: 918 K--VKTFNLVKQSLELKNIDSSTEIPVEKDTLYIAHTQADKHALMRLPGMNGIE-VLTTH 974 Query: 542 EAQGKTFDNV 571 EAQGKT D+V Sbjct: 975 EAQGKTRDHV 984 [23][TOP] >UniRef100_Q2F3J8 Replicase (Fragment) n=1 Tax=Blackberry chlorotic ringspot virus RepID=Q2F3J8_9BROM Length = 197 Score = 135 bits (339), Expect = 3e-30 Identities = 68/110 (61%), Positives = 82/110 (74%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 SNRSS+DELKETI C+ + K + IRT DSYLM S + RL+FDECFL HAG +YAAAT Sbjct: 88 SNRSSSDELKETIKCADVMK-YRIRTVDSYLMLKSWFSSDRLLFDECFLTHAGCIYAAAT 146 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADAT 331 LA EVI GDTEQ+PF+SR P F +HHKL+GK+E + T+R P DAT Sbjct: 147 LAQVKEVIALGDTEQVPFISRLPEFRVQHHKLSGKIEVQTTTYRCPRDAT 196 [24][TOP] >UniRef100_Q9IWA9 Replication protein n=2 Tax=Oat golden stripe virus RepID=Q9IWA9_9VIRU Length = 1853 Score = 115 bits (289), Expect = 2e-24 Identities = 76/180 (42%), Positives = 99/180 (55%), Gaps = 9/180 (5%) Frame = +2 Query: 59 KLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIP 232 +L IRT DSYLM ++A + FDE + HAG+VY A L G +VI GD++QIP Sbjct: 1097 ELKRIRTVDSYLMHDCGKTLRASVVHFDEALMAHAGMVYFCADLLGAKKVICQGDSQQIP 1156 Query: 233 FVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEV 409 FV+R S ++ KL + E +T+RSP D + L Y + V T + VLRS+ V Sbjct: 1157 FVNRVESISLQYAKLVIDRTESVRMTYRSPIDVAHYLNAKAYYDGGRVTTKNEVLRSMSV 1216 Query: 410 V------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 V P+NS V + YL TQAEK L KG ++ T HEAQGKTFDNV Sbjct: 1217 VGPRGTRPMNSAYCVPYVKDTQYLTFTQAEKDDLFKALRSKGSVSVNTVHEAQGKTFDNV 1276 [25][TOP] >UniRef100_Q89249 209 kDa readthrough protein n=2 Tax=Soil-borne wheat mosaic virus RepID=Q89249_SBWMV Length = 1828 Score = 110 bits (274), Expect = 1e-22 Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 12/200 (6%) Frame = +2 Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172 + + ++LKE C+ + L IRT DS+LM +A + FDE + HAG+VY Sbjct: 1053 KEATEDLKEKFMKKHKCAE-SDLKRIRTVDSFLMHDYDKFRAATVHFDEALMAHAGIVYF 1111 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349 A + G +VI GD++QIPF++R S ++ KL + E +T+RSP D + L K Sbjct: 1112 CADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDETEYVRLTYRSPVDVAHYLTKK 1171 Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511 + + V T + VLRS++VV P+ S V + +A YL TQ+EKA L Sbjct: 1172 SWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRDAQYLTFTQSEKADLYKALRA 1231 Query: 512 KGCDNIFTTHEAQGKTFDNV 571 KG + T HE QGKTFD+V Sbjct: 1232 KGPVEVNTVHETQGKTFDDV 1251 [26][TOP] >UniRef100_Q9JAD2 207K protein n=2 Tax=Soil-borne cereal mosaic virus RepID=Q9JAD2_9VIRU Length = 1816 Score = 107 bits (267), Expect = 7e-22 Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 12/200 (6%) Frame = +2 Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172 + + ++LKE + C+ + L +RT DS+LM +A + FDE + HAG+VY Sbjct: 1041 KEATEDLKEKFSKRLKCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349 A + G +V+ GD++QIPF++R S ++ KL E +T+RSP D + L K Sbjct: 1100 CADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159 Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511 Y + V T + LRS+ V P+ S V + YL TQ+EKA L Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRN 1219 Query: 512 KGCDNIFTTHEAQGKTFDNV 571 +G N+ T HE QGKTFDNV Sbjct: 1220 RGPVNVNTVHETQGKTFDNV 1239 [27][TOP] >UniRef100_Q9DJG6 Replication protein n=2 Tax=Soil-borne cereal mosaic virus RepID=Q9DJG6_9VIRU Length = 1816 Score = 107 bits (266), Expect = 9e-22 Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 12/200 (6%) Frame = +2 Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172 + + ++LKE + C+ T L +RT DS+LM +A + FDE + HAG+VY Sbjct: 1041 KEATEDLKEKFAKRLKCTE-TALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349 A + G V+ GD++QIPF++R S ++ KL E +T+RSP D + L K Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159 Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511 Y + V T + LRS+ V P+ S V + + YL TQ+EKA L Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219 Query: 512 KGCDNIFTTHEAQGKTFDNV 571 +G N+ T HE QGKTFD+V Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239 [28][TOP] >UniRef100_Q9JAD3 207K protein n=2 Tax=Soil-borne cereal mosaic virus RepID=Q9JAD3_9VIRU Length = 1816 Score = 105 bits (263), Expect = 2e-21 Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%) Frame = +2 Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172 + + ++LKE + C+ + L +RT DS+LM +A + FDE + HAG+VY Sbjct: 1041 KEATEDLKEKFSKRLKCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349 A + G +V+ GD++QIPF++R S ++ KL E +T+RSP D + L K Sbjct: 1100 CADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159 Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511 Y + V T + LRS+ V P+ S V + YL TQ+EKA L Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRN 1219 Query: 512 KGCDNIFTTHEAQGKTFDNV 571 +G N+ T HE QGKTF+NV Sbjct: 1220 RGPVNVNTVHETQGKTFENV 1239 [29][TOP] >UniRef100_Q9JGK3 152-kDa protein n=1 Tax=Soil-borne wheat mosaic virus RepID=Q9JGK3_SBWMV Length = 1334 Score = 105 bits (262), Expect = 3e-21 Identities = 75/182 (41%), Positives = 97/182 (53%), Gaps = 10/182 (5%) Frame = +2 Query: 56 TKLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQI 229 ++L IRT DSYLM ++A + FDE + HAG VY A L G +VI GD++QI Sbjct: 1085 SELGRIRTVDSYLMHDCGKKLRATTVHFDEALMTHAGAVYFCADLLGARKVICQGDSQQI 1144 Query: 230 PFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLE-KYFYKNKRPVKTNSRVLRSI 403 PFV+R S + KL K + +T+RSP D + L K FY R + T + V+RS+ Sbjct: 1145 PFVNRVESIKLQFAKLVIDKTDLIRMTYRSPIDVAHYLNYKSFYTGGR-ITTKNEVVRSM 1203 Query: 404 EVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 VV P+ S SV YL TQ EK L KG N+ T HE QGKTFD Sbjct: 1204 SVVGPRNVRPMTSVYSVPYVPGVQYLTFTQTEKDDLFKALRSKGHVNVNTVHETQGKTFD 1263 Query: 566 NV 571 +V Sbjct: 1264 DV 1265 [30][TOP] >UniRef100_Q9JAD4 207K protein n=2 Tax=Soil-borne cereal mosaic virus RepID=Q9JAD4_9VIRU Length = 1816 Score = 105 bits (262), Expect = 3e-21 Identities = 71/200 (35%), Positives = 104/200 (52%), Gaps = 12/200 (6%) Frame = +2 Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172 + + ++LKE + C+ T L +RT DS+LM +A + FDE + HAG+VY Sbjct: 1041 KEATEDLKEKFAKRLKCTE-TALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349 A + G V+ GD++QIPF++R S ++ KL E +T+RSP D + L K Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159 Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511 Y + V T + LRS+ V P+ S V + YL TQ+EK+ L Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRGAKPMTSVHCVPYQRDTQYLTFTQSEKSDLYKALRN 1219 Query: 512 KGCDNIFTTHEAQGKTFDNV 571 +G N+ T HE QGKTFD+V Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239 [31][TOP] >UniRef100_Q9IWB1 Replication protein n=2 Tax=Soil-borne cereal mosaic virus RepID=Q9IWB1_9VIRU Length = 1816 Score = 105 bits (261), Expect = 3e-21 Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%) Frame = +2 Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172 + + ++LKE + C+ + L +RT DS+LM +A + FDE + HAG+VY Sbjct: 1041 KEATEDLKEKFAKRLRCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349 A + G V+ GD++QIPF++R S ++ KL E +T+RSP D + L K Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159 Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511 Y + V T + LRS+ V P+ S V + + YL TQ+EKA L Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219 Query: 512 KGCDNIFTTHEAQGKTFDNV 571 +G N+ T HE QGKTFD+V Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239 [32][TOP] >UniRef100_Q91DN3 Replication protein n=2 Tax=Soil-borne wheat mosaic virus RepID=Q91DN3_SBWMV Length = 1816 Score = 105 bits (261), Expect = 3e-21 Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%) Frame = +2 Query: 8 RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172 + + ++LKE + C+ + L +RT DS+LM +A + FDE + HAG+VY Sbjct: 1041 KEATEDLKEKFAKRLRCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349 A + G V+ GD++QIPF++R S ++ KL E +T+RSP D + L K Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159 Query: 350 FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511 Y + V T + LRS+ V P+ S V + + YL TQ+EKA L Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219 Query: 512 KGCDNIFTTHEAQGKTFDNV 571 +G N+ T HE QGKTFD+V Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239 [33][TOP] >UniRef100_Q9WJD7 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus RepID=Q9WJD7_9VIRU Length = 1858 Score = 104 bits (259), Expect = 6e-21 Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%) Frame = +2 Query: 62 LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238 L IRT DS+LM +A + FDE + HAG+VY A + G +VI GD++QIPF+ Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163 Query: 239 SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412 +R S ++ KL + E +T+RSP D + L K + + V T + V+RS++ V Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223 Query: 413 -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 P+ S V +A YL TQ+EK L KG + T HE QGKTFD+V Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281 [34][TOP] >UniRef100_Q91QY9 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus RepID=Q91QY9_9VIRU Length = 1858 Score = 104 bits (259), Expect = 6e-21 Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%) Frame = +2 Query: 62 LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238 L IRT DS+LM +A + FDE + HAG+VY A + G +VI GD++QIPF+ Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163 Query: 239 SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412 +R S ++ KL + E +T+RSP D + L K + + V T + V+RS++ V Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223 Query: 413 -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 P+ S V +A YL TQ+EK L KG + T HE QGKTFD+V Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281 [35][TOP] >UniRef100_B3IUH4 p212 n=2 Tax=Soil-borne wheat mosaic virus RepID=B3IUH4_SBWMV Length = 1858 Score = 104 bits (259), Expect = 6e-21 Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%) Frame = +2 Query: 62 LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238 L IRT DS+LM +A + FDE + HAG+VY A + G +VI GD++QIPF+ Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163 Query: 239 SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412 +R S ++ KL + E +T+RSP D + L K + + V T + V+RS++ V Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223 Query: 413 -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 P+ S V +A YL TQ+EK L KG + T HE QGKTFD+V Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281 [36][TOP] >UniRef100_Q9QBU0 Polymerase n=2 Tax=Potato mop-top virus RepID=Q9QBU0_9VIRU Length = 1303 Score = 103 bits (258), Expect = 7e-21 Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 9/197 (4%) Frame = +2 Query: 8 RSSADELKETIDC---SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178 R +A++L+E + T+L +RT DSYL++ + +A L FDE + HAG+VY A Sbjct: 1040 REAAEDLRERFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCA 1099 Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPAD-ATYCLEKYF 352 VI GD++QIPF++R S R+ KL V K +T+RSP D A+Y +K F Sbjct: 1100 DDLSARSVICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNF 1159 Query: 353 YKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC 520 Y N ++RS++ V + S S+ + YL Q+EK ++ Q +G Sbjct: 1160 YGTSVVTSANP-LVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMR-QYLGRGN 1217 Query: 521 DNIFTTHEAQGKTFDNV 571 N+ T HE+QGKT+DNV Sbjct: 1218 WNVNTVHESQGKTYDNV 1234 [37][TOP] >UniRef100_Q80A46 RNA-dependent RNA polymerase n=1 Tax=Potato mop-top virus RepID=Q80A46_9VIRU Length = 1303 Score = 103 bits (258), Expect = 7e-21 Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 9/197 (4%) Frame = +2 Query: 8 RSSADELKETIDC---SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178 R +A++L+E + T+L +RT DSYL++ + +A L FDE + HAG+VY A Sbjct: 1040 REAAEDLRERFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCA 1099 Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPAD-ATYCLEKYF 352 VI GD++QIPF++R S R+ KL V K +T+RSP D A+Y +K F Sbjct: 1100 DDLSARSVICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNF 1159 Query: 353 YKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC 520 Y N ++RS++ V + S S+ + YL Q+EK ++ Q +G Sbjct: 1160 YGTSVVTSANP-LVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMR-QYLGRGN 1217 Query: 521 DNIFTTHEAQGKTFDNV 571 N+ T HE+QGKT+DNV Sbjct: 1218 WNVNTVHESQGKTYDNV 1234 [38][TOP] >UniRef100_Q9JGJ7 145-kDa protein n=2 Tax=Sorghum chlorotic spot virus RepID=Q9JGJ7_9VIRU Length = 1277 Score = 100 bits (250), Expect = 6e-20 Identities = 73/181 (40%), Positives = 95/181 (52%), Gaps = 10/181 (5%) Frame = +2 Query: 59 KLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIP 232 +L+ +RT DSYLM + L FDE + HAG+VY A L G ++I GD++QIP Sbjct: 1029 ELNRVRTVDSYLMHDCGKEMTCNTLHFDEALMAHAGMVYFCADLLGARKLICQGDSQQIP 1088 Query: 233 FVSRNPSFVFRHHKLT-GKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIE 406 FV+R S R+ L K ++ T+RSP D A Y K +Y R TNS RS+ Sbjct: 1089 FVNRVESITLRYANLVIDKTDKIRHTYRSPIDVACYLTMKGYYGADRITTTNSDG-RSLG 1147 Query: 407 VV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDN 568 VV P+ S V YL TQAEK L KG ++ T HEAQGKTF++ Sbjct: 1148 VVGPRHEKPMTSVYCVPYLAGVQYLTFTQAEKEDLHKALRSKGPVSVSTVHEAQGKTFND 1207 Query: 569 V 571 V Sbjct: 1208 V 1208 [39][TOP] >UniRef100_C8KH75 1a protein n=1 Tax=Melandrium yellow fleck virus RepID=C8KH75_9BROM Length = 948 Score = 100 bits (248), Expect = 1e-19 Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 19/209 (9%) Frame = +2 Query: 2 SNRSSADELKETI-DCSPLTKL--HYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +NR SAD+++ I +P ++ YIRT DS +M K +R++ DE L H G + A Sbjct: 696 ANRKSADDVRAAIFPENPNNEIATRYIRTADSAIMHGLP-KCKRVLIDEAGLMHYGQLLA 754 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346 A ++GC EV+ FGDTEQI F SR+ +F +H+ + R+L+ T+R P D ++ Sbjct: 755 VAAISGCDEVVAFGDTEQISFKSRDVTFRMKHNAINYD-SRELVKTTYRCPQDVVDAVKL 813 Query: 347 YFYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508 K R K N S V +S+ I+SP + N YL TQ++KA L QT Sbjct: 814 LKRKCGNRGSKYNDWVSKSTVRKSLYKRSISSPTQINIEVNKFYLTMTQSDKAAL--QTR 871 Query: 509 LKGC--------DNIFTTHEAQGKTFDNV 571 K +NI T HEAQG + DNV Sbjct: 872 AKDFSLSKDWIENNIKTVHEAQGISVDNV 900 [40][TOP] >UniRef100_C7U0R4 Putative 204K replicase protein n=2 Tax=Beet soil-borne virus RepID=C7U0R4_9VIRU Length = 1778 Score = 98.2 bits (243), Expect = 4e-19 Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 10/198 (5%) Frame = +2 Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178 R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A Sbjct: 1007 REAAAELRERFKTVRGSTDEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066 Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349 +I GD++QIPF++R S + KL T VE++L T+RSP D A + K Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125 Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517 FY + N RS+ VV + S S+ + A YL TQ+EK + KG Sbjct: 1126 FYGTSTVMSANP-TGRSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183 Query: 518 CDNIFTTHEAQGKTFDNV 571 ++ T HE+QGKT+D+V Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201 [41][TOP] >UniRef100_O56790 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=O56790_9VIRU Length = 1778 Score = 97.8 bits (242), Expect = 5e-19 Identities = 75/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%) Frame = +2 Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178 R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKILHFDEALMAHAGMVYFCA 1066 Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349 +I GD++QIPF++R S + KL T VE++L T+RSP D A + K Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125 Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517 FY + + S RSI VV + S S+ + A YL TQ+EK + KG Sbjct: 1126 FYWHFHCYERKSNG-RSISVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183 Query: 518 CDNIFTTHEAQGKTFDNV 571 ++ T HE+QGKT+D+V Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201 [42][TOP] >UniRef100_B6E276 Replicase large subunit n=2 Tax=Hibiscus latent Fort Pierce virus RepID=B6E276_9VIRU Length = 1646 Score = 97.4 bits (241), Expect = 7e-19 Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 6/184 (3%) Frame = +2 Query: 38 IDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGD 217 IDC+ +RT DS+LM+ L DE + H G+V L+ C++ +GD Sbjct: 896 IDCTKPANTSNVRTVDSFLMNPKPFTYDTLWIDEGLMLHTGMVNYCVLLSHCTKCFIYGD 955 Query: 218 TEQIPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSR 388 T+QIPF++R +F + H T E++ IT R P D T+ L + + K PV + S Sbjct: 956 TQQIPFINRVMNFDYPGHLRTIVVDDTEKRRITSRCPLDVTFYLTQRY---KGPVMSTSS 1012 Query: 389 VLRSIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKT 559 V RS+E + P E L + TQA+K LK KG +++ T HE QG+T Sbjct: 1013 VTRSVETKFVAGPARFEPRATPLPGKIVTFTQADKETLKK----KGYNDVHTVHEIQGET 1068 Query: 560 FDNV 571 F+ V Sbjct: 1069 FNEV 1072 [43][TOP] >UniRef100_C5IXG8 204 kDa protein n=1 Tax=Beet soil-borne virus RepID=C5IXG8_9VIRU Length = 1778 Score = 97.1 bits (240), Expect = 9e-19 Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%) Frame = +2 Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178 R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066 Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349 +I GD++QIPF++R S + KL T VE++L T+RSP D A + K Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125 Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517 FY + + S RS+ VV + S S+ + A YL TQ+EK + KG Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDIVRYLG-KG 1183 Query: 518 CDNIFTTHEAQGKTFDNV 571 ++ T HE+QGKT+D+V Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201 [44][TOP] >UniRef100_B4X9D6 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D6_9VIRU Length = 1778 Score = 97.1 bits (240), Expect = 9e-19 Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%) Frame = +2 Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178 R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066 Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349 +I GD++QIPF++R S + KL T VE++L T+RSP D A + K Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125 Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517 FY + + S RS+ VV + S S+ + A YL TQ+EK + KG Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183 Query: 518 CDNIFTTHEAQGKTFDNV 571 ++ T HE+QGKT+D+V Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201 [45][TOP] >UniRef100_O90699 Putative uncharacterized protein n=2 Tax=Beet virus Q RepID=O90699_9VIRU Length = 1818 Score = 95.5 bits (236), Expect = 3e-18 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 5/172 (2%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS++M+ +A L FDE + HAG VY A + VI GD++QIPFV R Sbjct: 1071 VRTVDSFIMNDRFSRANVLHFDEALMAHAGTVYFCADMLSARTVICQGDSQQIPFVPRVE 1130 Query: 251 SFVFRHHKL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV----P 415 ++ KL V K +T+RSP D L + Y + + + LRS++ + Sbjct: 1131 GITLKYAKLKIDNVVEKRLTYRSPLDVAAFLTRKGYYGNSVIMSANETLRSMKTIGPRTG 1190 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + S S+ + N YL TQAEK ++ KG + T HE QGKT++NV Sbjct: 1191 MTSIYSIPKVANCQYLTFTQAEKEEMEKYLG-KGKWGVNTVHECQGKTYENV 1241 [46][TOP] >UniRef100_B4X9D8 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D8_9VIRU Length = 1778 Score = 95.5 bits (236), Expect = 3e-18 Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 10/198 (5%) Frame = +2 Query: 8 RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178 R +A EL+E T+ S +L +RT DS+LM+ +A+ L FDE + HAG+VY A Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066 Query: 179 TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349 +I GD++QIPF++R S + KL T VE++L T+RSP D A + K Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125 Query: 350 FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517 FY + + S RS+ VV + S S+ + A YL TQ+EK + KG Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183 Query: 518 CDNIFTTHEAQGKTFDNV 571 ++ T H++QGKT+D+V Sbjct: 1184 QWSVNTVHKSQGKTYDDV 1201 [47][TOP] >UniRef100_Q9DUT3 Genomic RNA1 for 1a protein, (ORF1) n=1 Tax=Pelargonium zonate spot virus RepID=Q9DUT3_PZSV Length = 962 Score = 93.6 bits (231), Expect = 1e-17 Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 15/199 (7%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181 + +SS D LK +P + +RT DS LM A K +R++FDE L H G + A T Sbjct: 721 NKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILT 780 Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYK 358 ++G E+IGFGD+EQI FVSR+ F ++HKL+ ++++ T+R P D C++ K Sbjct: 781 ISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRCPKDVVECVKIMARK 840 Query: 359 -NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH---- 508 R K T S V +S+ ++S + YL TQA+KA L ++ Sbjct: 841 VGARGSKYNNWFTTSAVRKSLGYHKVSSINESPLRPDVHYLTMTQADKASLLSKARETRF 900 Query: 509 ---LKGCDNIF-TTHEAQG 553 + D + TTHE+QG Sbjct: 901 RPSVSTIDEVIKTTHESQG 919 [48][TOP] >UniRef100_Q8JW08 1a protein n=1 Tax=Spring beauty latent virus RepID=Q8JW08_9BROM Length = 958 Score = 92.8 bits (229), Expect = 2e-17 Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 17/207 (8%) Frame = +2 Query: 2 SNRSSADELKETI--DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175 +NR SA++++E + D + +RT DS +M K RL+ DE L H G + A Sbjct: 706 ANRKSAEDVREALFGDVNSKIANEVVRTADSAIMHGLP-KCSRLLIDEAGLLHYGQLLAV 764 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLEK 346 A L GC V+ FGDTEQI F SR+ +F FRH + + +R+ + T+R P D ++K Sbjct: 765 AALCGCETVLAFGDTEQISFKSRDVTFKFRHAVI--EYDRRDVVTETFRCPEDVISAIKK 822 Query: 347 YFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508 K R K T S V S+ + ++S V + YL TQA+KA L ++ Sbjct: 823 LKRKCGNRDSKYLSWRTQSSVKTSLGMRSVSSVTQVNIEKHKFYLTMTQADKAALVSRAK 882 Query: 509 LKGCD------NIFTTHEAQGKTFDNV 571 D +I T HEAQG + D+V Sbjct: 883 DFPVDKTWVDKHIKTVHEAQGVSVDHV 909 [49][TOP] >UniRef100_Q9YPH5 209kDa protein n=2 Tax=Broad bean necrosis virus RepID=Q9YPH5_9VIRU Length = 1821 Score = 91.3 bits (225), Expect = 5e-17 Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 9/176 (5%) Frame = +2 Query: 71 IRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DSYL++ + ++A + FDE + HAG+VY A + + GD++QIPF++R Sbjct: 1063 VRTVDSYLLNDFGNKLRADTVHFDEALMAHAGMVYFIAMMCSAKRIKCQGDSKQIPFINR 1122 Query: 245 NPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV--- 412 S + KL + K +T+RSP D Y L K + + + + +LRS++ V Sbjct: 1123 VESIKLEYAKLDIHETIAKRLTYRSPLDVAYYLTKKGFYGLDFITSANPLLRSMKTVGPR 1182 Query: 413 ---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 P++S + + A YL TQ EK +K Q G + T HEAQGKTF++V Sbjct: 1183 SSTPMSSIYVIPKTKGASYLTFTQTEKDEMK-QYLGSGDWTVNTVHEAQGKTFNDV 1237 [50][TOP] >UniRef100_C6F418 ORF1a n=1 Tax=Citrus tristeza virus RepID=C6F418_9CLOS Length = 3115 Score = 91.3 bits (225), Expect = 5e-17 Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D LTK H I+T DSYLM+ +K L DECF+ Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLTK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 2791 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2792 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943 [51][TOP] >UniRef100_Q8JVK7 Replicase large subunit n=2 Tax=Paprika mild mottle virus RepID=Q8JVK7_PMMV Length = 1616 Score = 90.5 bits (223), Expect = 8e-17 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKA---QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241 ++T DS+LM+ +RL DE + H G VY TL+ C E FGDT+QIP+++ Sbjct: 881 VKTVDSFLMNLGKGPRNHFKRLFIDEGLMLHPGCVYFLVTLSLCDEAFVFGDTQQIPYIN 940 Query: 242 RNPSFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412 R +F F H + + E++ T R P D T+ L + + + V T S RS+ V Sbjct: 941 RVQNFPFPKHFSKLIVDETEKRRTTLRCPVDVTHFLNQRY---EGAVTTTSTTTRSVGVD 997 Query: 413 PINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 +N ++ T L + TQ++K L + +G +N+ T HE QG+T+D+V Sbjct: 998 VVNGAATMNPVTRPLKGKIITFTQSDKITLAS----RGYENVNTVHEIQGETYDDV 1049 [52][TOP] >UniRef100_Q05983 Non-structural polyprotein protein n=1 Tax=Raspberry bushy dwarf virus RepID=Q05983_RBDV Length = 1694 Score = 90.5 bits (223), Expect = 8e-17 Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 11/181 (6%) Frame = +2 Query: 68 YIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +IRT DSYL+S S L DE L H G++ A ++G +V FGD+EQIPF +R Sbjct: 901 FIRTVDSYLLSPSVTGSCDELFIDEYGLSHPGILLLAIHISGIRKVTLFGDSEQIPFCNR 960 Query: 245 NPSFVFRHHK-----LTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEV 409 F +++ L E + T+R P D T L+K YK K P+KT S V SI + Sbjct: 961 LADFPLKYNSVEDVGLNFDREIRSTTYRCPQDITLSLQK-MYKTK-PIKTVSTVESSITI 1018 Query: 410 VPINS----PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVY 574 PI S P+ + LY+C T+ ++++LK + + + + T H AQG ++ NV Sbjct: 1019 KPIKSEFEIPLPNAFDGPVLYICMTKHDESLLKLRWAKENISSEVRTVHAAQGLSYKNVV 1078 Query: 575 F 577 + Sbjct: 1079 Y 1079 [53][TOP] >UniRef100_Q9IFX0 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9IFX0_9CLOS Length = 3115 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943 [54][TOP] >UniRef100_Q9DTG5 349-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=Q9DTG5_9CLOS Length = 3132 Score = 90.1 bits (222), Expect = 1e-16 Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 24/214 (11%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 2750 ANKNSQAEISQRISKELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2808 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWR 313 HAG + A C V+ FGD+ QI ++ RN V H + +E + +++R Sbjct: 2809 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRVYGEVSYR 2868 Query: 314 SPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVL 493 P D L K++ ++ T S S+ + IN V +++A Y+ +TQAEK L Sbjct: 2869 CPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL 2928 Query: 494 KAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 Q HL K + T HE QG+T+ V Sbjct: 2929 --QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2960 [55][TOP] >UniRef100_Q9DJR0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR0_9CLOS Length = 371 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233 [56][TOP] >UniRef100_Q9DJQ6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJQ6_9CLOS Length = 357 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 18 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 76 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 77 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 133 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 134 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 191 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 192 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 228 [57][TOP] >UniRef100_Q9DJQ2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJQ2_9CLOS Length = 257 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 18 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 76 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 77 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 133 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 134 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 191 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 192 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 228 [58][TOP] >UniRef100_Q9DJP5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJP5_9CLOS Length = 319 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 20 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 78 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 79 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 135 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 136 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 193 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 194 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 230 [59][TOP] >UniRef100_Q9DJP3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJP3_9CLOS Length = 368 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 22 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 80 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 81 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 137 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 195 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 232 [60][TOP] >UniRef100_Q9DJN7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJN7_9CLOS Length = 371 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLDVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233 [61][TOP] >UniRef100_Q9DJN1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus RepID=Q9DJN1_9CLOS Length = 371 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233 [62][TOP] >UniRef100_Q9DJM1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM1_9CLOS Length = 371 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSAGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [63][TOP] >UniRef100_Q9DJL6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJL6_9CLOS Length = 371 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPRDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [64][TOP] >UniRef100_B5THB7 p1a n=1 Tax=Citrus tristeza virus RepID=B5THB7_9CLOS Length = 3115 Score = 90.1 bits (222), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943 [65][TOP] >UniRef100_Q9DJQ5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJQ5_9CLOS Length = 368 Score = 89.7 bits (221), Expect = 1e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [66][TOP] >UniRef100_Q9DJM8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM8_9CLOS Length = 371 Score = 89.7 bits (221), Expect = 1e-16 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKVLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T+S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233 [67][TOP] >UniRef100_Q9DJM7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM7_9CLOS Length = 371 Score = 89.7 bits (221), Expect = 1e-16 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T+S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233 [68][TOP] >UniRef100_Q9DJM6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM6_9CLOS Length = 262 Score = 89.7 bits (221), Expect = 1e-16 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T+S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233 [69][TOP] >UniRef100_Q9DJN8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJN8_9CLOS Length = 367 Score = 89.4 bits (220), Expect = 2e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [70][TOP] >UniRef100_Q9DJN6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJN6_9CLOS Length = 371 Score = 89.4 bits (220), Expect = 2e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [71][TOP] >UniRef100_Q9DJN4 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus RepID=Q9DJN4_9CLOS Length = 370 Score = 89.4 bits (220), Expect = 2e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 22 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 80 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 81 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 137 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 195 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 232 [72][TOP] >UniRef100_Q9DJN3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJN3_9CLOS Length = 371 Score = 89.4 bits (220), Expect = 2e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [73][TOP] >UniRef100_Q9DJM9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM9_9CLOS Length = 371 Score = 89.4 bits (220), Expect = 2e-16 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [74][TOP] >UniRef100_Q9DJM3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM3_9CLOS Length = 371 Score = 89.4 bits (220), Expect = 2e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [75][TOP] >UniRef100_Q9DJM0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM0_9CLOS Length = 371 Score = 89.4 bits (220), Expect = 2e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [76][TOP] >UniRef100_Q2LK62 P349 protein n=1 Tax=Citrus tristeza virus RepID=Q2LK62_9CLOS Length = 3115 Score = 89.4 bits (220), Expect = 2e-16 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943 [77][TOP] >UniRef100_O10467 347-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=O10467_9CLOS Length = 3115 Score = 89.4 bits (220), Expect = 2e-16 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943 [78][TOP] >UniRef100_B5THA5 p1a n=1 Tax=Citrus tristeza virus RepID=B5THA5_9CLOS Length = 3115 Score = 89.4 bits (220), Expect = 2e-16 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943 [79][TOP] >UniRef100_Q9DJN0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJN0_9CLOS Length = 371 Score = 89.0 bits (219), Expect = 2e-16 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +KA L DECF+ Sbjct: 23 ANKNSQAEISRRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKADLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDMDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYNVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233 [80][TOP] >UniRef100_Q9DJP7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJP7_9CLOS Length = 343 Score = 88.6 bits (218), Expect = 3e-16 Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 24/205 (11%) Frame = +2 Query: 29 KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAG 190 +E +D L K H ++T DSYLM+ +K L DECF+ HAG + A Sbjct: 9 RELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTS 67 Query: 191 CSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCL 340 C V+ FGD+ QI ++ RN +F+ H++ G+V ++R P D L Sbjct: 68 CKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWL 122 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--- 511 K++ ++ T S S+ + IN V +++A Y+ +TQAEK L Q HL Sbjct: 123 SKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRL 180 Query: 512 -----KGCDNIFTTHEAQGKTFDNV 571 K + T HE QG+T+ V Sbjct: 181 TVGRTKAVPIVNTVHEVQGETYKKV 205 [81][TOP] >UniRef100_Q9DJR6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR6_9CLOS Length = 371 Score = 88.2 bits (217), Expect = 4e-16 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG T+ V Sbjct: 197 EKNDL--QKHLGRLTVGRTKAVPIVNTVHEVQGDTYKKV 233 [82][TOP] >UniRef100_Q9DJM5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM5_9CLOS Length = 371 Score = 88.2 bits (217), Expect = 4e-16 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN Sbjct: 58 TVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFG 117 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L K++ ++ T S S+ Sbjct: 118 VSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVS 172 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 173 IEIINGCDDVPYDSSAKYIAYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETY 230 Query: 563 DNV 571 V Sbjct: 231 KKV 233 [83][TOP] >UniRef100_Q5G7G7 Polyprotein 1a n=2 Tax=Mint virus 1 RepID=Q5G7G7_9CLOS Length = 2511 Score = 88.2 bits (217), Expect = 4e-16 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 6/174 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 + T DSYLM+ L DECF+ HAG V C I FGD++QI ++ R+ Sbjct: 2192 VMTMDSYLMNRCGETCDLLFMDECFMVHAGQVLGIINKTMCKVAILFGDSKQIHYIERDE 2251 Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 +H + +E I++R P D L K + + + T+S +S+ VV Sbjct: 2252 FVSTVYHDIDSFIEPFCRMYGEISYRCPWDVCEWLSKLYKRQIKSNNTSSIGKQSVSVVN 2311 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNVY 574 I S V + YL +TQ+EKA L+ + + ++ T HEAQG+TF NVY Sbjct: 2312 IESVEDVPFVQSIKYLTYTQSEKAELRRKFEKFSSEPSVNTVHEAQGETFKNVY 2365 [84][TOP] >UniRef100_P27752 Methyltransferase n=1 Tax=Cowpea chlorotic mottle virus RepID=ORF1A_CCMV Length = 958 Score = 88.2 bits (217), Expect = 4e-16 Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%) Frame = +2 Query: 2 SNRSSADELKETI-DCSPLTKLHY--IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +N+ SA++++E + +P +++ + IRT DS LM + +RL+ DE L H G + A Sbjct: 706 ANKKSAEDVREALFPHNPSSEIAFKVIRTADSALMHGLP-RCKRLLVDEAGLLHYGQLLA 764 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346 A L C V+ FGDTEQI F SR+ +F ++ L R ++ TWR P D ++ Sbjct: 765 VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823 Query: 347 YFYKNKRPV-----KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT-H 508 R K++S+V RSI I SP+ V + YL TQA+KA L ++ Sbjct: 824 LKRGGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAKD 883 Query: 509 LKGCD------NIFTTHEAQGKTFDN 568 D +I T HEAQG + D+ Sbjct: 884 FPELDKAWIEKHIKTVHEAQGVSVDH 909 [85][TOP] >UniRef100_Q9WJD8 (PEBV) genomic RNA1 for 141K, 201K, 30K and 12K proteins n=2 Tax=Pea early-browning virus RepID=Q9WJD8_PEBV Length = 1766 Score = 87.8 bits (216), Expect = 5e-16 Identities = 67/175 (38%), Positives = 88/175 (50%), Gaps = 8/175 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKA--QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 ++T DS+LM S L FDE + HAG+V+ A +A +VI GD +QI + R Sbjct: 1012 VKTVDSFLMHCSDGNCVGDLLHFDEALMAHAGMVFFCAQIAKAKKVICQGDQKQIAYKPR 1071 Query: 245 NPSFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 R L G+ VE K +++R P D L++ FY K V T + VLRS++V Sbjct: 1072 VSQLTLRFTSLIGRFDEVEEKRMSYRCPVDVALTLDR-FYTGK--VVTKNSVLRSMDVKR 1128 Query: 416 INSPVSVERNTNALYLCHTQAEK---AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 I S VE YL Q+EK A L Q +K N T HEAQGKTF V Sbjct: 1129 IGSKEQVEMEHGIQYLTFLQSEKKDIANLLCQRKVKSFVN--TVHEAQGKTFKKV 1181 [86][TOP] >UniRef100_Q9DJS0 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus RepID=Q9DJS0_9CLOS Length = 371 Score = 87.8 bits (216), Expect = 5e-16 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANIGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233 [87][TOP] >UniRef100_Q9DJR1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR1_9CLOS Length = 371 Score = 87.8 bits (216), Expect = 5e-16 Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 24/214 (11%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWR 313 HAG + A C V+ FGD+ QI ++ RN V H + E + +++R Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDALYEPQHRIYGEVSYR 141 Query: 314 SPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVL 493 P D L K++ ++ T S S+ + IN V +++A Y+ +TQAEK L Sbjct: 142 CPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQAEKNEL 201 Query: 494 KAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 Q HL K + T HE QG+T+ V Sbjct: 202 --QKHLGRLTVGRTKPVPVVNTVHEVQGETYKKV 233 [88][TOP] >UniRef100_Q9DJM4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM4_9CLOS Length = 371 Score = 87.8 bits (216), Expect = 5e-16 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN Sbjct: 58 TVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFG 117 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L K++ ++ T S S+ Sbjct: 118 VSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVS 172 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 173 IEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETY 230 Query: 563 DNV 571 V Sbjct: 231 KKV 233 [89][TOP] >UniRef100_Q9DJM2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJM2_9CLOS Length = 370 Score = 87.8 bits (216), Expect = 5e-16 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 22 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 80 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 81 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 137 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S+ + IN V +++A Y+ +TQA Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGGVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 195 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 232 [90][TOP] >UniRef100_Q8BEM6 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM6_CCMV Length = 959 Score = 87.8 bits (216), Expect = 5e-16 Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 18/207 (8%) Frame = +2 Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +N+ SA++++E + + S L IRT DS LM + +RL+ DE L H G + A Sbjct: 706 ANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLP-QCKRLLVDEAGLLHYGQLLA 764 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346 A L C V+ FGDTEQI F SR+ +F ++ L R ++ TWR P D ++ Sbjct: 765 VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823 Query: 347 YFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT- 505 K K++S+V RSI I SP+ V + YL TQA+KA L ++ Sbjct: 824 LKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAK 883 Query: 506 HLKGCD------NIFTTHEAQGKTFDN 568 D +I T HEAQG + D+ Sbjct: 884 DFPELDKAWIEKHIKTVHEAQGVSVDH 910 [91][TOP] >UniRef100_Q8BEM3 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM3_CCMV Length = 959 Score = 87.8 bits (216), Expect = 5e-16 Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 18/207 (8%) Frame = +2 Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +N+ SA++++E + + S L IRT DS LM + +RL+ DE L H G + A Sbjct: 706 ANKKSAEDVREALFPDNPSSEIALKVIRTADSALMHGLP-QCKRLLVDEAGLLHYGQLLA 764 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346 A L C V+ FGDTEQI F SR+ +F ++ L R ++ TWR P D ++ Sbjct: 765 VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823 Query: 347 YFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT- 505 K K++S+V RSI I SP+ V + YL TQA+KA L ++ Sbjct: 824 LKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAK 883 Query: 506 HLKGCD------NIFTTHEAQGKTFDN 568 D +I T HEAQG + D+ Sbjct: 884 DFPELDKAWIEKHIKTVHEAQGVSVDH 910 [92][TOP] >UniRef100_Q9DJQ8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJQ8_9CLOS Length = 371 Score = 87.4 bits (215), Expect = 7e-16 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L ECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVGECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233 [93][TOP] >UniRef100_Q9DJP8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJP8_9CLOS Length = 369 Score = 87.4 bits (215), Expect = 7e-16 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 21 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 79 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 80 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 136 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + N V +++A Y+ +TQA Sbjct: 137 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVTNGCDDVPYDSSAKYIVYTQA 194 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG T+ V Sbjct: 195 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGDTYKKV 231 [94][TOP] >UniRef100_Q9WID7 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9WID7_9CLOS Length = 3115 Score = 87.0 bits (214), Expect = 9e-16 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H ++T DSYLM+ + L DECF+ Sbjct: 2733 ANKNSQAEISQRISREFMDRKMLAK-HVVKTAGRVFTVDSYLMNHLRLTTDLLFVDECFM 2791 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATTNTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943 [95][TOP] >UniRef100_Q9DJL9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJL9_9CLOS Length = 371 Score = 86.3 bits (212), Expect = 2e-15 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ +E +D L K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ T S S+ + IN V +++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE Q +T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQEETYKKV 233 [96][TOP] >UniRef100_Q65661 1a protein n=1 Tax=Brome mosaic virus RepID=Q65661_BMV Length = 961 Score = 85.9 bits (211), Expect = 2e-15 Identities = 73/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%) Frame = +2 Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +NR SA++++ + + L +RT DS +M RL+ DE L H G + Sbjct: 709 ANRKSAEDVRMALFPDTFNSKVALDIVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343 A L+ CS+V+ FGDTEQI F SR+ F H L K +R+ + T+R P D + Sbjct: 768 VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRDVVHKTYRCPQDVIAAVN 825 Query: 344 KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505 K R K + S+V RS+ I S + V + N YL TQA+KA L QT Sbjct: 826 LLKRKCGNRDTKYQSWTSESKVSRSLAKRRITSVLQVTIDPNRTYLTMTQADKAAL--QT 883 Query: 506 HLKGC--------DNIFTTHEAQGKTFDNV 571 K +I T HEAQG + DNV Sbjct: 884 RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913 [97][TOP] >UniRef100_A0SL67 1a n=1 Tax=Brome mosaic virus RepID=A0SL67_BMV Length = 961 Score = 85.9 bits (211), Expect = 2e-15 Identities = 73/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%) Frame = +2 Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +NR SA++++ + + L +RT DS +M RL+ DE L H G + Sbjct: 709 ANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343 A L+ CS+V+ FGDTEQI F SR+ F H L K +R+ + T+R P D + Sbjct: 768 VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRDVVHKTYRCPQDVIAAVN 825 Query: 344 KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505 K R K + S+V RS+ I S + V + N YL TQA+KA L QT Sbjct: 826 LLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSVLQVTIDPNRTYLTMTQADKAAL--QT 883 Query: 506 HLKGC--------DNIFTTHEAQGKTFDNV 571 K +I T HEAQG + DNV Sbjct: 884 RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913 [98][TOP] >UniRef100_Q9WJQ9 Putative uncharacterized protein (Fragment) n=1 Tax=Tobacco rattle virus RepID=Q9WJQ9_9VIRU Length = 400 Score = 85.5 bits (210), Expect = 3e-15 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Frame = +2 Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 + R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY Sbjct: 141 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 200 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A +AG I GD QI F R R L GK V K T+RSPAD L Sbjct: 201 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 260 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517 KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K Sbjct: 261 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 317 Query: 518 CDNIFTTHEAQGKTFDNV 571 + T HE+QG+TF +V Sbjct: 318 AAKVSTVHESQGETFKDV 335 [99][TOP] >UniRef100_Q9J942 194 kDa protein n=2 Tax=Tobacco rattle virus RepID=Q9J942_9VIRU Length = 1707 Score = 85.5 bits (210), Expect = 3e-15 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Frame = +2 Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 + R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A +AG I GD QI F R R L GK V K T+RSPAD L Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517 KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104 Query: 518 CDNIFTTHEAQGKTFDNV 571 + T HE+QG+TF +V Sbjct: 1105 AAKVSTVHESQGETFKDV 1122 [100][TOP] >UniRef100_Q9DL34 RNA-dependent RNA polymerase n=2 Tax=Tobacco rattle virus RepID=Q9DL34_9VIRU Length = 1707 Score = 85.5 bits (210), Expect = 3e-15 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Frame = +2 Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 + R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A +AG I GD QI F R R L GK V K T+RSPAD L Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517 KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104 Query: 518 CDNIFTTHEAQGKTFDNV 571 + T HE+QG+TF +V Sbjct: 1105 AAKVSTVHESQGETFKDV 1122 [101][TOP] >UniRef100_Q8JU32 Putative replicase n=2 Tax=Tobacco rattle virus RepID=Q8JU32_9VIRU Length = 1707 Score = 85.5 bits (210), Expect = 3e-15 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Frame = +2 Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 + R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A +AG I GD QI F R R L GK V K T+RSPAD L Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517 KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104 Query: 518 CDNIFTTHEAQGKTFDNV 571 + T HE+QG+TF +V Sbjct: 1105 AAKVSTVHESQGETFKDV 1122 [102][TOP] >UniRef100_O56250 RNA polymerase n=1 Tax=Tobacco rattle virus RepID=O56250_9VIRU Length = 1707 Score = 85.5 bits (210), Expect = 3e-15 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Frame = +2 Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 + R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A +AG I GD QI F R R L GK V K T+RSPAD L Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVVAVL 1047 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517 KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104 Query: 518 CDNIFTTHEAQGKTFDNV 571 + T HE+QG+TF +V Sbjct: 1105 AAKVSTVHESQGETFKDV 1122 [103][TOP] >UniRef100_P05080 134 kDa protein n=2 Tax=Tobacco rattle virus RepID=194K_TRVSY Length = 1707 Score = 85.5 bits (210), Expect = 3e-15 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Frame = +2 Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 + R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A +AG I GD QI F R R L GK V K T+RSPAD L Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517 KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104 Query: 518 CDNIFTTHEAQGKTFDNV 571 + T HE+QG+TF +V Sbjct: 1105 AAKVSTVHESQGETFKDV 1122 [104][TOP] >UniRef100_Q70BW7 Replicase n=2 Tax=Tobacco rattle virus RepID=Q70BW7_9VIRU Length = 1707 Score = 85.1 bits (209), Expect = 4e-15 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%) Frame = +2 Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 + R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A +AG I GD QI F R R L GK V K T+RSPAD L Sbjct: 988 FCAQIAGAKRCICQGDQNQISFKPRVSQVNLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517 KY+ + V+T++ S+ V I S V A Y+ Q+EK L L K Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELINLLALRKV 1104 Query: 518 CDNIFTTHEAQGKTFDNV 571 + T HE+QG+TF +V Sbjct: 1105 AAKVSTVHESQGETFKDV 1122 [105][TOP] >UniRef100_Q9DJQ1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus RepID=Q9DJQ1_9CLOS Length = 370 Score = 84.7 bits (208), Expect = 5e-15 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+ Sbjct: 22 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 80 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 81 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 137 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ S S+ + IN V ++A Y+ +TQA Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 195 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 196 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 232 [106][TOP] >UniRef100_Q1XF44 Replicase large subunit n=2 Tax=Streptocarpus flower break virus RepID=Q1XF44_9VIRU Length = 1606 Score = 84.7 bits (208), Expect = 5e-15 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+L+ + +RL DE + H G V A + C EV+ +GDT QIPF++R Sbjct: 869 VRTVDSFLIHMKGTQVKRLFIDEGLMLHTGCVNFLALFSHCEEVLVYGDTHQIPFINRVA 928 Query: 251 SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H VE++ +T R PAD T+ L Y K V S +LRS+E + Sbjct: 929 NFPYPSHFAQLQYDSVEKRRVTLRCPADVTHHLNSQ-YDGK--VMCTSSILRSVECEVVR 985 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDNV 571 + T L + TQ++K L+ + + + ++ T HE QG+T+++V Sbjct: 986 GKAVLNPKTKPLSGKIITFTQSDKLELQNKGYGEVDVLDVNTVHEIQGETYEHV 1039 [107][TOP] >UniRef100_B8YDL1 p349 protein n=1 Tax=Citrus tristeza virus RepID=B8YDL1_9CLOS Length = 3113 Score = 84.7 bits (208), Expect = 5e-15 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+ Sbjct: 2731 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 2789 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 2846 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ S S+ + IN V ++A Y+ +TQA Sbjct: 2847 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 2904 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2905 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 2941 [108][TOP] >UniRef100_B8PRP6 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=B8PRP6_9CLOS Length = 3113 Score = 84.7 bits (208), Expect = 5e-15 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+ Sbjct: 2731 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 2789 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 2846 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ S S+ + IN V ++A Y+ +TQA Sbjct: 2847 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 2904 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2905 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 2941 [109][TOP] >UniRef100_A3QVG6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus RepID=A3QVG6_TMGMV Length = 1609 Score = 84.7 bits (208), Expect = 5e-15 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 6/173 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +RL DE + H G V ++GC+ +GDT+QIPF++R Sbjct: 880 VRTVDSFLMHPKPRTHKRLFIDEGLMLHTGCVNFLVLISGCNIAYIYGDTQQIPFINRVQ 939 Query: 251 SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H KL +VE + T R P D + L+ K + V T S V RS+ I Sbjct: 940 NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIG 996 Query: 422 SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 SV + + TQA+K L+ KG N+ T HE QG+TF++V Sbjct: 997 GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045 [110][TOP] >UniRef100_Q00020 Methyltransferase n=1 Tax=Broad bean mottle virus RepID=ORF1A_BBMV Length = 966 Score = 84.7 bits (208), Expect = 5e-15 Identities = 72/206 (34%), Positives = 103/206 (50%), Gaps = 16/206 (7%) Frame = +2 Query: 2 SNRSSADELKETI--DCSPL-TKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +NR SA+++++ I D S L +RT DS +M + RL+ DE L H G + A Sbjct: 714 ANRKSAEDVRKAIFGDASDSEVALKVVRTADSAIMHGLP-ECHRLLVDEAGLLHYGQLLA 772 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349 A L CSEV+ FGDTEQI F SR+ +F ++ + K + T+R P D ++ Sbjct: 773 VADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKRDIVSKTFRCPQDVVSAVKIL 832 Query: 350 FYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511 K R K N S+V +S+ I S V + YL T+A+KA L ++ Sbjct: 833 KRKCANRSSKYNGWVSSSKVEKSLSKSRIVSINQVSMEKHKFYLTMTEADKAALCSRAKD 892 Query: 512 KGCD------NIFTTHEAQGKTFDNV 571 G D N+ T HEAQGK D+V Sbjct: 893 VGLDKTWVESNMETVHEAQGKAVDHV 918 [111][TOP] >UniRef100_Q8V703 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus RepID=Q8V703_TMGMV Length = 1609 Score = 84.3 bits (207), Expect = 6e-15 Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 6/173 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +RL DE + H G V ++GC +GDT+QIPF++R Sbjct: 880 VRTVDSFLMHPKPRTHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939 Query: 251 SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H KL +VE + T R P D + L+ K + V T S V RS+ I Sbjct: 940 NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIG 996 Query: 422 SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 SV + + TQA+K L+ KG N+ T HE QG+TF++V Sbjct: 997 GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045 [112][TOP] >UniRef100_Q50L56 1a protein n=1 Tax=Cassia yellow blotch virus RepID=Q50L56_9BROM Length = 955 Score = 84.3 bits (207), Expect = 6e-15 Identities = 68/209 (32%), Positives = 101/209 (48%), Gaps = 19/209 (9%) Frame = +2 Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +N+ SA +++E I D +IRT DS LM QRL+ DE L H G V A Sbjct: 701 ANKKSASDVREAIFPEDPEGEIASKFIRTADSALMHGLP-SCQRLLIDEAGLLHFGQVLA 759 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349 A + +EV+ FGD+EQI F SR+ +F FRH K+ + + +T+R P D + K Sbjct: 760 VAAICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDVVTVTYRCPQDVVAAVVKM 819 Query: 350 FYKNKRPVK-------TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508 + + + + S+V +S+ PI+S + + Y TQ+ KA L T Sbjct: 820 KRRTGKLRESKYSSWISRSKVEKSLSARPISSLNQIVIEPHKFYQTMTQSAKAAL--MTR 877 Query: 509 LKGCD--------NIFTTHEAQGKTFDNV 571 K NI T HE+QG + D+V Sbjct: 878 AKDFQLPKSWIEANIKTAHESQGISVDHV 906 [113][TOP] >UniRef100_P03588 Methyltransferase n=1 Tax=Brome mosaic virus RepID=ORF1A_BMV Length = 961 Score = 84.3 bits (207), Expect = 6e-15 Identities = 72/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%) Frame = +2 Query: 2 SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172 +NR SA++++ + + L +RT DS +M RL+ DE L H G + Sbjct: 709 ANRKSAEDVRMALFPDTYNSKVALDVVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343 A L+ CS+V+ FGDTEQI F SR+ F H L + +R+ + T+R P D + Sbjct: 768 VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--QYDRRDVVHKTYRCPQDVIAAVN 825 Query: 344 KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505 K R K + S+V RS+ I S + V + N YL TQA+KA L QT Sbjct: 826 LLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQVTIDPNRTYLTMTQADKAAL--QT 883 Query: 506 HLKGC--------DNIFTTHEAQGKTFDNV 571 K +I T HEAQG + DNV Sbjct: 884 RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913 [114][TOP] >UniRef100_Q9DJT4 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJT4_9CLOS Length = 371 Score = 84.0 bits (206), Expect = 8e-15 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD+EQI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSEQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [115][TOP] >UniRef100_Q9DJS5 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus RepID=Q9DJS5_9CLOS Length = 371 Score = 84.0 bits (206), Expect = 8e-15 Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN SF+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K + ++ S S+ + IN V +A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 233 [116][TOP] >UniRef100_Q9DJL4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJL4_9CLOS Length = 371 Score = 84.0 bits (206), Expect = 8e-15 Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K L DECF+ Sbjct: 23 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN SF+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K + ++ S S+ + IN V +A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 233 [117][TOP] >UniRef100_D0EAN1 348 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAN1_9CLOS Length = 3113 Score = 84.0 bits (206), Expect = 8e-15 Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K L DECF+ Sbjct: 2731 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 2789 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN SF+ H++ G+V Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 2846 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K + ++ S S+ + IN V +A Y+ +TQA Sbjct: 2847 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 2904 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 2905 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 2941 [118][TOP] >UniRef100_Q9DJS1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJS1_9CLOS Length = 371 Score = 83.6 bits (205), Expect = 1e-14 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+ Sbjct: 23 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ + S S+ + IN V ++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPXHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 197 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 233 [119][TOP] >UniRef100_Q9DJR8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR8_9CLOS Length = 371 Score = 83.6 bits (205), Expect = 1e-14 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K + L DECF+ Sbjct: 23 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 81 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN +F+ H++ G+V Sbjct: 82 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 138 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D L K++ ++ S S+ + IN V ++A Y+ +TQA Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 196 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK + Q HL K + T HE QG+T+ V Sbjct: 197 EKN--EFQKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 233 [120][TOP] >UniRef100_Q84918 195K protein n=2 Tax=Pepper ringspot virus RepID=Q84918_9VIRU Length = 1698 Score = 83.6 bits (205), Expect = 1e-14 Identities = 61/173 (35%), Positives = 86/173 (49%), Gaps = 6/173 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKA--QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT D++LM S + + L FDE + HAG+V+ A LA V+ GD +QI + R Sbjct: 945 VRTVDAFLMHCSNGECIGETLHFDEALMAHAGMVFFCAQLAKAKLVVCQGDQKQIAYKPR 1004 Query: 245 NPSFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 + L G+ VE K +T+R P D L++ FY K V T + VLRS+ Sbjct: 1005 VAQVNLKFLSLVGRFDEVEEKRLTYRCPIDVALSLDR-FYTGK--VVTKNNVLRSMTTKR 1061 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNV 571 I+S V YL Q+EK + L+ + + T HEAQGKTF V Sbjct: 1062 ISSKEQVTMEKGVQYLTFLQSEKKEIATMLALRKIEAAVNTVHEAQGKTFKKV 1114 [121][TOP] >UniRef100_Q9DJS4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJS4_9CLOS Length = 366 Score = 83.2 bits (204), Expect = 1e-14 Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 29/219 (13%) Frame = +2 Query: 2 SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148 +N++S E+ KE +D + K H I+T DSYLM+ +K L DECF+ Sbjct: 20 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 78 Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298 HAG + A C V+ FGD+ QI ++ RN SF+ H++ G+V Sbjct: 79 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 135 Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478 ++R P D + K + ++ S S+ + IN V +A Y+ +TQA Sbjct: 136 --SYRCPWDICEWMSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 193 Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 EK L Q HL K + T HE QG+T+ V Sbjct: 194 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 230 [122][TOP] >UniRef100_Q9DJU2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJU2_9CLOS Length = 371 Score = 82.8 bits (203), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [123][TOP] >UniRef100_Q9DJT5 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJT5_9CLOS Length = 371 Score = 82.8 bits (203), Expect = 2e-14 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ V IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSVEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [124][TOP] >UniRef100_Q9DJR4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR4_9CLOS Length = 371 Score = 82.8 bits (203), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [125][TOP] >UniRef100_Q9DJR3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR3_9CLOS Length = 371 Score = 82.8 bits (203), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICKWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [126][TOP] >UniRef100_Q5K6D3 Replicase large subunit n=2 Tax=Hibiscus latent Singapore virus RepID=Q5K6D3_9VIRU Length = 1638 Score = 82.8 bits (203), Expect = 2e-14 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM+ + + L DE + H G + L+ C + FGDT+QIPF++R Sbjct: 902 VRTVDSFLMNPKPFEYKVLWIDEGLMLHTGAISFCVALSHCEQCYVFGDTQQIPFINRVM 961 Query: 251 SFVF---RHHKLTGKVERKLITWRSPADAT-YCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418 +F + +T VE++ IT R P D T Y ++Y K PV + + V RS++ + Sbjct: 962 NFDYPKTLQTLVTDSVEKRRITSRCPLDVTCYLAQRY----KGPVVSTNNVERSLDTKLV 1017 Query: 419 NSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 E L + TQA+K LK +G ++ T HE QG+T+ V Sbjct: 1018 AGAARFEPQLTPLPGKVITFTQADKETLKK----RGYQDVHTVHEVQGETYTEV 1067 [127][TOP] >UniRef100_A4LAL6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus RepID=A4LAL6_TMGMV Length = 1609 Score = 82.8 bits (203), Expect = 2e-14 Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 6/173 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +RL DE + H G V ++GC +GDT+QIPF++R Sbjct: 880 VRTVDSFLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939 Query: 251 SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H KL +VE T R P D + L+ K + V T S V RS+ I Sbjct: 940 NFPYPKHFEKLQVDEVEMGRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIG 996 Query: 422 SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 SV + + TQA+K L+ KG N+ T HE QG+TF++V Sbjct: 997 GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045 [128][TOP] >UniRef100_P18339 Replicase small subunit n=1 Tax=Tobacco mild green mosaic virus RepID=RDRP_TMGMV Length = 1609 Score = 82.8 bits (203), Expect = 2e-14 Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 6/173 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS LM +RL DE + H G V ++GC +GDT+QIPF++R Sbjct: 880 VRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939 Query: 251 SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H KL +VE + T R P D + L+ K + V T S V RS+ I Sbjct: 940 NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIG 996 Query: 422 SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 SV + + TQA+K L+ KG N+ T HE QG+TF++V Sbjct: 997 GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045 [129][TOP] >UniRef100_UPI0000164AC8 401-kDa viral polyprotein n=2 Tax=Citrus tristeza virus RepID=UPI0000164AC8 Length = 3582 Score = 82.4 bits (202), Expect = 2e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 2777 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2836 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 2837 VSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2891 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 2892 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2949 Query: 563 DNV 571 V Sbjct: 2950 KRV 2952 [130][TOP] >UniRef100_Q9DJT7 Putative uncharacterized protein (Fragment) n=2 Tax=Citrus tristeza virus RepID=Q9DJT7_9CLOS Length = 371 Score = 82.4 bits (202), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [131][TOP] >UniRef100_Q9DJT6 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJT6_9CLOS Length = 301 Score = 82.4 bits (202), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [132][TOP] >UniRef100_Q9DJT2 Putative uncharacterized protein (Fragment) n=4 Tax=Citrus tristeza virus RepID=Q9DJT2_9CLOS Length = 371 Score = 82.4 bits (202), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [133][TOP] >UniRef100_Q9DJT1 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJT1_9CLOS Length = 371 Score = 82.4 bits (202), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [134][TOP] >UniRef100_Q9DJR7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR7_9CLOS Length = 371 Score = 82.4 bits (202), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [135][TOP] >UniRef100_Q9DJR5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR5_9CLOS Length = 371 Score = 82.4 bits (202), Expect = 2e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 58 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVS 172 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230 Query: 563 DNV 571 V Sbjct: 231 KRV 233 [136][TOP] >UniRef100_Q9DJN9 Polyprotein (Fragment) n=9 Tax=Citrus tristeza virus RepID=Q9DJN9_9CLOS Length = 371 Score = 82.4 bits (202), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [137][TOP] >UniRef100_Q8B3T9 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=Q8B3T9_9CLOS Length = 3122 Score = 82.4 bits (202), Expect = 2e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 2775 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2889 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2947 Query: 563 DNV 571 V Sbjct: 2948 KRV 2950 [138][TOP] >UniRef100_Q66237 349-kDa viral polyprotein n=1 Tax=Citrus tristeza virus RepID=Q66237_9CLOS Length = 3124 Score = 82.4 bits (202), Expect = 2e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 2777 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2836 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 2837 VSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2891 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 2892 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2949 Query: 563 DNV 571 V Sbjct: 2950 KRV 2952 [139][TOP] >UniRef100_C0L2T4 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=C0L2T4_9VIRU Length = 1648 Score = 82.4 bits (202), Expect = 2e-14 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD EQ Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAEQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [140][TOP] >UniRef100_B9VB08 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB08_9CLOS Length = 3116 Score = 82.4 bits (202), Expect = 2e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 2849 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 2850 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944 [141][TOP] >UniRef100_B5THC9 p1a n=1 Tax=Citrus tristeza virus RepID=B5THC9_9CLOS Length = 3122 Score = 82.4 bits (202), Expect = 2e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 2775 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2889 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2947 Query: 563 DNV 571 V Sbjct: 2948 KRV 2950 [142][TOP] >UniRef100_UPI000019AB7D polyprotein n=2 Tax=Cucurbit yellow stunting disorder virus RepID=UPI000019AB7D Length = 2482 Score = 82.0 bits (201), Expect = 3e-14 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256 T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R + Sbjct: 1733 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1792 Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403 + R+HK LT K I++R P D Y L Y N PV N VLRS+ Sbjct: 1793 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1852 Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565 EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF Sbjct: 1853 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1908 Query: 566 NVY 574 +VY Sbjct: 1909 HVY 1911 [143][TOP] >UniRef100_Q9DJT0 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJT0_9CLOS Length = 366 Score = 82.0 bits (201), Expect = 3e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 53 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 112 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 113 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 167 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 168 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 225 Query: 563 DNV 571 V Sbjct: 226 KRV 228 [144][TOP] >UniRef100_Q9DJS7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJS7_9CLOS Length = 371 Score = 82.0 bits (201), Expect = 3e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 58 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 172 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230 Query: 563 DNV 571 V Sbjct: 231 KRV 233 [145][TOP] >UniRef100_Q9DJR9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJR9_9CLOS Length = 371 Score = 82.0 bits (201), Expect = 3e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 23 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 83 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVXSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233 [146][TOP] >UniRef100_Q9DJQ9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJQ9_9CLOS Length = 371 Score = 82.0 bits (201), Expect = 3e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 58 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVS 172 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230 Query: 563 DNV 571 V Sbjct: 231 KRV 233 [147][TOP] >UniRef100_Q8JUV0 1a n=1 Tax=Cucurbit yellow stunting disorder virus RepID=Q8JUV0_9CLOS Length = 1977 Score = 82.0 bits (201), Expect = 3e-14 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256 T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R + Sbjct: 1733 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1792 Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403 + R+HK LT K I++R P D Y L Y N PV N VLRS+ Sbjct: 1793 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1852 Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565 EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF Sbjct: 1853 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1908 Query: 566 NVY 574 +VY Sbjct: 1909 HVY 1911 [148][TOP] >UniRef100_Q70UT1 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus RepID=Q70UT1_9CLOS Length = 2483 Score = 82.0 bits (201), Expect = 3e-14 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256 T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R + Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793 Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403 + R+HK LT K I++R P D Y L Y N PV N VLRS+ Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853 Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565 EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909 Query: 566 NVY 574 +VY Sbjct: 1910 HVY 1912 [149][TOP] >UniRef100_C9EFC7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus RepID=C9EFC7_9VIRU Length = 1648 Score = 82.0 bits (201), Expect = 3e-14 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ IT R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [150][TOP] >UniRef100_C9EFC3 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus RepID=C9EFC3_9VIRU Length = 1648 Score = 82.0 bits (201), Expect = 3e-14 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ IT R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [151][TOP] >UniRef100_C3V8Q5 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=C3V8Q5_9VIRU Length = 1648 Score = 82.0 bits (201), Expect = 3e-14 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ IT R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [152][TOP] >UniRef100_B9VB56 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB56_9CLOS Length = 3122 Score = 82.0 bits (201), Expect = 3e-14 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 2775 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVS 2889 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 2947 Query: 563 DNV 571 V Sbjct: 2948 KRV 2950 [153][TOP] >UniRef100_B9VB20 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB20_9CLOS Length = 3116 Score = 82.0 bits (201), Expect = 3e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLQLTTQLLFVDECFMV 2793 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDFGVSLLHDIDAFIQPEHRIYGEV---- 2849 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 2850 -SYRCPWDICERLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944 [154][TOP] >UniRef100_A5JM41 p227 n=1 Tax=Cucurbit yellow stunting disorder virus RepID=A5JM41_9CLOS Length = 1978 Score = 82.0 bits (201), Expect = 3e-14 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256 T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R + Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793 Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403 + R+HK LT K I++R P D Y L Y N PV N VLRS+ Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853 Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565 EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909 Query: 566 NVY 574 +VY Sbjct: 1910 HVY 1912 [155][TOP] >UniRef100_A5JM40 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus RepID=A5JM40_9CLOS Length = 2483 Score = 82.0 bits (201), Expect = 3e-14 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256 T DS LM K +L DE F+ H+G + L C+ + +GD QIPF++R + Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793 Query: 257 VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403 + R+HK LT K I++R P D Y L Y N PV N VLRS+ Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853 Query: 404 EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565 EV PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909 Query: 566 NVY 574 +VY Sbjct: 1910 HVY 1912 [156][TOP] >UniRef100_Q9DJP4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJP4_9CLOS Length = 366 Score = 81.6 bits (200), Expect = 4e-14 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L+ DECF+ Sbjct: 18 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLLVDECFMV 77 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H+ G+V Sbjct: 78 HAGAIGAVXEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRTYGEV---- 133 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 134 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 192 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 193 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 228 [157][TOP] >UniRef100_C8CJL7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus RepID=C8CJL7_9VIRU Length = 1648 Score = 81.6 bits (200), Expect = 4e-14 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ IT R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [158][TOP] >UniRef100_Q9Q6Q4 Helicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1 RepID=Q9Q6Q4_9CLOS Length = 398 Score = 81.3 bits (199), Expect = 5e-14 Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Frame = +2 Query: 128 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 298 + DE ++ H G+ G EVI +GD QIPF++R +FV + + +++ Sbjct: 163 LIDEVYMLHKGMFQLTVVSMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEEQIDYT 222 Query: 299 LITWRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 457 I++R PAD Y L K Y N + R LRS E VPI +P + Sbjct: 223 DISYRCPADVCYVLSSMTDARGKKMYPNGVFPNGDVRPLRSFEKVPIATPEDALLYEADV 282 Query: 458 YLCHTQAEKAVL-KAQTHL-----KGCDNIFTTHEAQGKTFDNV 571 YL TQ EKA + KA + K ++ TTHEAQGKT++NV Sbjct: 283 YLTMTQNEKAEMQKAVAKMEVVAGKKRPDVITTHEAQGKTYENV 326 [159][TOP] >UniRef100_Q991N2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q991N2_9CLOS Length = 1980 Score = 81.3 bits (199), Expect = 5e-14 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAA 175 +N S+ ++ ++ T+ + Y RT DS +M++ V K + DECFL HAG + Sbjct: 1259 ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRVGKCDTVCIDECFLVHAGELKIC 1318 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346 LAG EV +GD++QIPF++R +FV R+ + KV ++ +++R P+D L + Sbjct: 1319 TALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGFKVIKRNVSYRCPSDVCVMLSE 1378 Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499 K+KR VK +SR RS+ I+S V+ +++ TQ EK + Sbjct: 1379 --KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVNN 1436 Query: 500 QT---HLKGCDNIFTTHEAQGKT 559 + LK N T HE QGKT Sbjct: 1437 EAKARRLKVSTN--TVHEIQGKT 1457 [160][TOP] >UniRef100_Q991N1 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q991N1_9CLOS Length = 1528 Score = 81.3 bits (199), Expect = 5e-14 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAA 175 +N S+ ++ ++ T+ + Y RT DS +M++ V K + DECFL HAG + Sbjct: 1259 ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRVGKCDTVCIDECFLVHAGELKIC 1318 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346 LAG EV +GD++QIPF++R +FV R+ + KV ++ +++R P+D L + Sbjct: 1319 TALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGFKVIKRNVSYRCPSDVCVMLSE 1378 Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499 K+KR VK +SR RS+ I+S V+ +++ TQ EK + Sbjct: 1379 --KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVNN 1436 Query: 500 QT---HLKGCDNIFTTHEAQGKT 559 + LK N T HE QGKT Sbjct: 1437 EAKARRLKVSTN--TVHEIQGKT 1457 [161][TOP] >UniRef100_Q0GK55 Polyprotein 1a n=2 Tax=Strawberry chlorotic fleck associated virus RepID=Q0GK55_9CLOS Length = 2787 Score = 81.3 bits (199), Expect = 5e-14 Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 14/202 (6%) Frame = +2 Query: 8 RSSADELK------ETIDCSPLTKL-HYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLV 166 R + ELK E + L KL I T DSYLM VK ++ DECF+ HAG V Sbjct: 2438 RRAKSELKGNLKEGENLSLGDLKKLTSTIYTVDSYLMHHINVKGDIMLVDECFMMHAGAV 2497 Query: 167 YAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL-----ITWRSPADAT 331 AA + C + +GD+ QI ++ RN H + + ++ +++R P D Sbjct: 2498 TAAFQFSQCKKAALYGDSRQIHYIQRNDLGCSLLHDINDFLSDEVRVYGDVSFRCPWDVC 2557 Query: 332 YCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQ--T 505 L + + R +S S+ VV INS V + + +YL +TQ EK ++ Sbjct: 2558 EWLSLTYPVHIRSTNEDSVGKSSMRVVCINSVEEVPVDQDHVYLTYTQDEKRDVRKHLLK 2617 Query: 506 HLKGCDNIFTTHEAQGKTFDNV 571 + C + T HEAQG T+ V Sbjct: 2618 SVTDCPVVLTVHEAQGATYKYV 2639 [162][TOP] >UniRef100_P87587 P346 n=1 Tax=Citrus tristeza virus RepID=P87587_9CLOS Length = 3107 Score = 81.3 bits (199), Expect = 5e-14 Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 24/205 (11%) Frame = +2 Query: 29 KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAG 190 +E +D L K H ++T DSYLM+ +K L D CF+ HAG + A Sbjct: 2739 RELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDVCFMVHAGAIGAVVEFTS 2797 Query: 191 CSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCL 340 V+ FGD+ QI ++ RN +F+ H++ G+V ++R P D L Sbjct: 2798 RKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWL 2852 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--- 511 K++ ++ T S S+ + IN V +++A Y+ +TQAEK L Q HL Sbjct: 2853 SKFYPRHVATANTGSIGRSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRL 2910 Query: 512 -----KGCDNIFTTHEAQGKTFDNV 571 K + T HE QG+T+ V Sbjct: 2911 TVAGTKAVPIVNTVHEVQGETYKKV 2935 [163][TOP] >UniRef100_D0EWY6 194 kDa readthrough protein n=2 Tax=Tobacco rattle virus RepID=D0EWY6_9VIRU Length = 1707 Score = 81.3 bits (199), Expect = 5e-14 Identities = 65/198 (32%), Positives = 91/198 (45%), Gaps = 8/198 (4%) Frame = +2 Query: 2 SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 + R++ D+L E P ++T DS+LM ++ L FDE + HAG+VY Sbjct: 928 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A +A I GD QI F R R L GK V K T+RSPAD L Sbjct: 988 FCAQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVL 1047 Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517 K++ + V+T++ S+ V I S V A Y+ Q+EK L L K Sbjct: 1048 NKFYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKV 1104 Query: 518 CDNIFTTHEAQGKTFDNV 571 + T HE+QG+TF +V Sbjct: 1105 AAKVSTVHESQGETFKDV 1122 [164][TOP] >UniRef100_C0L2S6 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=C0L2S6_9VIRU Length = 1648 Score = 81.3 bits (199), Expect = 5e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATTDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [165][TOP] >UniRef100_B7FAV2 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 10 RepID=B7FAV2_9CLOS Length = 2294 Score = 81.3 bits (199), Expect = 5e-14 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 22/212 (10%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRL---IFDECFLQHAGLVYA 172 ++R++AD L E D +K + T DS++ S ++ + + DEC++ HAGL Sbjct: 2017 ASRNAADSLNEYWDSDINSKRVIVMTVDSFIFSGGRFYSEDIYSVLLDECYMSHAGLCIL 2076 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERKLITWRSPADATYCLE 343 A L S + +GD Q+PF++RNP F L G KL+T+R PAD Y + Sbjct: 2077 IAALTNPSFLSFYGDRRQVPFINRNPIFRDSMGMLKVSQGSYTEKLLTYRCPADICYWMS 2136 Query: 344 KYFYKN------KRPVKT--NSRVLRSIEVVPIN-SPVSVERNTNALYLCHTQAEKAVLK 496 Y PVKT + R L+S+ + P + S + ++ + + + TQ EK L Sbjct: 2137 SVDYLKPGGRLYSGPVKTVKDGRPLKSVRITPFSPSQLDFMKHVDRV-MTFTQLEKTDLI 2195 Query: 497 AQTHLKGCDN-------IFTTHEAQGKTFDNV 571 ++ G + I T E+QG+T+ V Sbjct: 2196 SKFQTAGFGDRDAAEQLIGTVAESQGETYSRV 2227 [166][TOP] >UniRef100_A0SEL1 126 kDa replicase n=1 Tax=Maracuja mosaic virus RepID=A0SEL1_9VIRU Length = 1103 Score = 81.3 bits (199), Expect = 5e-14 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+L++ V+ + DE + H G++ + C + FGDT+QIPF++R Sbjct: 871 VRTFDSFLINRVPVRFDTVWVDEGLMVHTGVIQFSRLRTNCKRMYVFGDTKQIPFINRVM 930 Query: 251 SFVF----RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418 +F + R K+ +E + +T R PAD T L + + V T S LRS++ + Sbjct: 931 TFDYPECLRSLKV-NSIETRSVTKRCPADVTVYLSSQYESH---VLTTSNTLRSVDAQLL 986 Query: 419 -NSPVSVERNT--NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + V R T N + TQA+KA+LK ++ + T HE QG TFD V Sbjct: 987 KGAAVLTPRETVLNGKIVTFTQADKALLKKNGYI----GVNTVHEVQGDTFDEV 1036 [167][TOP] >UniRef100_Q9DJP9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJP9_9CLOS Length = 357 Score = 80.9 bits (198), Expect = 7e-14 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 26/216 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 12 ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 71 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 72 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 127 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D L +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 128 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 186 Query: 482 KAVLKAQ------THLKGCDNIFTTHEAQGKTFDNV 571 K L+ K + T HE QG+T+ V Sbjct: 187 KNDLQKHHGRLTVGRTKVVPIVNTVHEVQGETYKRV 222 [168][TOP] >UniRef100_Q8QZF3 126 kDa protein n=1 Tax=Pepper mild mottle virus RepID=Q8QZF3_9VIRU Length = 1117 Score = 80.9 bits (198), Expect = 7e-14 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + K + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [169][TOP] >UniRef100_Q8QTJ1 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=Q8QTJ1_9VIRU Length = 1648 Score = 80.9 bits (198), Expect = 7e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [170][TOP] >UniRef100_Q8QTI9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=Q8QTI9_9VIRU Length = 1648 Score = 80.9 bits (198), Expect = 7e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [171][TOP] >UniRef100_Q5DWU9 Replicase large subunit n=2 Tax=Pepper mild mottle virus RepID=Q5DWU9_9VIRU Length = 1612 Score = 80.9 bits (198), Expect = 7e-14 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + K + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [172][TOP] >UniRef100_Q4W8Q6 126k protein n=1 Tax=Pepper mild mottle virus RepID=Q4W8Q6_9VIRU Length = 1117 Score = 80.9 bits (198), Expect = 7e-14 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + K + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [173][TOP] >UniRef100_Q2XP16 P353 n=1 Tax=Citrus tristeza virus RepID=Q2XP16_9CLOS Length = 3124 Score = 80.9 bits (198), Expect = 7e-14 Identities = 61/199 (30%), Positives = 90/199 (45%), Gaps = 18/199 (9%) Frame = +2 Query: 29 KETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIG 208 K DCS + T DSYLM+ + Q L DECF+ HAG + A C V+ Sbjct: 2766 KYVTDCSSR-----VFTVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVF 2820 Query: 209 FGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYK 358 FGD++QI ++ RN +F+ H++ G+V ++R P D L ++ + Sbjct: 2821 FGDSKQIHYIHRNDLGVSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFNPR 2875 Query: 359 NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------K 514 + S S+ + IN V + A Y+ +TQAEK L Q HL K Sbjct: 2876 HVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNK 2933 Query: 515 GCDNIFTTHEAQGKTFDNV 571 + T HE QG+T+ V Sbjct: 2934 VVPIVNTVHEVQGETYKRV 2952 [174][TOP] >UniRef100_Q1XG51 Replicase large subunit n=2 Tax=Pepper mild mottle virus RepID=Q1XG51_9VIRU Length = 1612 Score = 80.9 bits (198), Expect = 7e-14 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + K + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [175][TOP] >UniRef100_D0EAL9 349 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAL9_9CLOS Length = 3116 Score = 80.9 bits (198), Expect = 7e-14 Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 23/213 (10%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWRS 316 HAG + A C V+ FGD++QI ++ RN V H + ++ + +++R Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHCIYGEVSYRC 2853 Query: 317 PADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK 496 P D L +++ ++ S S+ + IN V + A Y+ +TQAEK L Sbjct: 2854 PWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAEKNDL- 2912 Query: 497 AQTHL--------KGCDNIFTTHEAQGKTFDNV 571 Q HL K + T HE QG+T+ V Sbjct: 2913 -QKHLSRLTVGRTKVVPIVNTVHEVQGETYKRV 2944 [176][TOP] >UniRef100_C0L2T0 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=C0L2T0_9VIRU Length = 1648 Score = 80.9 bits (198), Expect = 7e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [177][TOP] >UniRef100_B9VB44 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB44_9CLOS Length = 3121 Score = 80.9 bits (198), Expect = 7e-14 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN Sbjct: 2774 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2833 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H + G+V ++R P D L +++ ++ S S+ Sbjct: 2834 VSLLHDIDAFIQPEHHIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVS 2888 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 2889 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 2946 Query: 563 DNV 571 V Sbjct: 2947 KRV 2949 [178][TOP] >UniRef100_B0FWD9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=B0FWD9_9VIRU Length = 1648 Score = 80.9 bits (198), Expect = 7e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [179][TOP] >UniRef100_A7KY79 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=A7KY79_9VIRU Length = 1648 Score = 80.9 bits (198), Expect = 7e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [180][TOP] >UniRef100_A4PE19 Replicase large subunit n=2 Tax=Pepper mild mottle virus RepID=A4PE19_9VIRU Length = 1612 Score = 80.9 bits (198), Expect = 7e-14 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + K + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [181][TOP] >UniRef100_P29098 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain Spain) RepID=RDRP_PMMVS Length = 1612 Score = 80.9 bits (198), Expect = 7e-14 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + K + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [182][TOP] >UniRef100_P89657 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain Japan) RepID=RDRP_PMMVJ Length = 1612 Score = 80.9 bits (198), Expect = 7e-14 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + K + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [183][TOP] >UniRef100_UPI00001BBB39 polyprotein n=1 Tax=Little cherry virus 2 RepID=UPI00001BBB39 Length = 2150 Score = 80.5 bits (197), Expect = 9e-14 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175 +N S+ ++ + ++ T+ + Y RT DS +M S A K + DECFL HAG + Sbjct: 1371 ANLESSLDINKQLNAERRTEGVRYARTIDSRVMNSLRAGKCDTVCIDECFLVHAGELKIC 1430 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346 A LAG EV +GD++QIPF++R SF ++ + KV ++ +++R P+D L + Sbjct: 1431 AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 1490 Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499 ++KR VK +SR RS+ I+S V+ +++ TQ EK + Sbjct: 1491 --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSN 1548 Query: 500 QTH---LKGCDNIFTTHEAQGKT 559 + LK N T HE QGKT Sbjct: 1549 EARARKLKVSSN--TVHEIQGKT 1569 [184][TOP] >UniRef100_Q8BEP9 Methyltransferase/helicase polyprotein n=3 Tax=Grapevine rootstock stem lesion associated virus RepID=Q8BEP9_9CLOS Length = 2931 Score = 80.5 bits (197), Expect = 9e-14 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN Sbjct: 2611 IYTIDAYLMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2670 Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 + L V+ + +++R P D L + VK S S+ + Sbjct: 2671 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINE 2730 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571 INS + + + YLC Q+EK + KG N+ T HEAQG+T+ V Sbjct: 2731 INSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARV 2784 [185][TOP] >UniRef100_Q9IR66 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=Q9IR66_9VIRU Length = 1648 Score = 80.5 bits (197), Expect = 9e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [186][TOP] >UniRef100_Q7T738 P182 n=1 Tax=Little cherry virus 2 RepID=Q7T738_9CLOS Length = 1640 Score = 80.5 bits (197), Expect = 9e-14 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175 +N S+ ++ + ++ T+ + Y RT DS +M S A K + DECFL HAG + Sbjct: 1371 ANLESSLDINKQLNAERRTEGVRYARTIDSRVMNSLRAGKCDTVCIDECFLVHAGELKIC 1430 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346 A LAG EV +GD++QIPF++R SF ++ + KV ++ +++R P+D L + Sbjct: 1431 AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 1490 Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499 ++KR VK +SR RS+ I+S V+ +++ TQ EK + Sbjct: 1491 --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSN 1548 Query: 500 QTH---LKGCDNIFTTHEAQGKT 559 + LK N T HE QGKT Sbjct: 1549 EARARKLKVSSN--TVHEIQGKT 1569 [187][TOP] >UniRef100_Q14V59 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=Q14V59_9VIRU Length = 1648 Score = 80.5 bits (197), Expect = 9e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFIFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [188][TOP] >UniRef100_C7EN47 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus RepID=C7EN47_9VIRU Length = 1648 Score = 80.5 bits (197), Expect = 9e-14 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC FGD +Q Sbjct: 905 SPVATSDNVRTFDSFVMNRKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFIFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [189][TOP] >UniRef100_P69514 Replicase small subunit n=1 Tax=Cucumber green mottle mosaic virus (watermelon strain SH) RepID=RDRP_CGMVS Length = 1648 Score = 80.5 bits (197), Expect = 9e-14 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P D T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [190][TOP] >UniRef100_Q806Y9 Methyltransferase and helicase polyprotein n=1 Tax=Cucumber yellows virus RepID=Q806Y9_9CLOS Length = 1887 Score = 80.1 bits (196), Expect = 1e-13 Identities = 60/197 (30%), Positives = 85/197 (43%), Gaps = 14/197 (7%) Frame = +2 Query: 23 ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199 E+ + +T H Y T DS LM V L DE F+ H G +A L C Sbjct: 1624 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEVTITNLYCDEIFMVHCGEWFACLNLIKCQS 1683 Query: 200 VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370 + FGD QIP+++R P+ V H +T +E I++R P D Y L P Sbjct: 1684 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 1743 Query: 371 V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520 + +N LRS+ V P+NSP ++ ++ TQ EK + LK Sbjct: 1744 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 1803 Query: 521 DNIFTTHEAQGKTFDNV 571 + T +E QG TF V Sbjct: 1804 KSANTVNEVQGGTFPTV 1820 [191][TOP] >UniRef100_Q49IH3 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2 RepID=Q49IH3_9CLOS Length = 2936 Score = 80.1 bits (196), Expect = 1e-13 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN Sbjct: 2616 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERND 2675 Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 + L V+ + +++R P D L + VK S S+ + Sbjct: 2676 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2735 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571 INS + + + YLC Q+EK + KG N+ T HEAQG+T+ V Sbjct: 2736 INSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARV 2789 [192][TOP] >UniRef100_Q2V8A8 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine leafroll-associated virus 2 RepID=Q2V8A8_9CLOS Length = 1317 Score = 80.1 bits (196), Expect = 1e-13 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN Sbjct: 997 IYTIDAYLMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 1056 Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 + L V+ + +++R P D L + VK S S+ + Sbjct: 1057 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINE 1116 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571 INS + + + YLC Q+EK + KG N+ T HEAQG+T+ V Sbjct: 1117 INSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARV 1170 [193][TOP] >UniRef100_Q9DJS3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus RepID=Q9DJS3_9CLOS Length = 370 Score = 79.7 bits (195), Expect = 1e-13 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 18/183 (9%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247 T DSYLM+ + Q L DE F+ HAG + A C V+ FGD++QI ++ RN Sbjct: 57 TVDSYLMNHLRLTTQLLFVDEYFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 116 Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406 +F+ H++ G+V ++R P D L +++ ++ S S+ Sbjct: 117 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 171 Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562 + IN V N A Y+ +TQAEK L Q HL K + T HE QG+T+ Sbjct: 172 IEEINGCDDVPYNKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 229 Query: 563 DNV 571 V Sbjct: 230 KRV 232 [194][TOP] >UniRef100_Q83943 1a protein n=1 Tax=Olive latent virus 2 RepID=Q83943_OLV2 Length = 908 Score = 79.7 bits (195), Expect = 1e-13 Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 21/206 (10%) Frame = +2 Query: 23 ELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEV 202 +LK DC+ IRT DSYL+ V+A+RL DE L H G + AA A C + Sbjct: 668 QLKPGTDCAKR-----IRTVDSYLLKPD-VQAKRLFIDEAGLVHPGKLLAAMRFAECDDC 721 Query: 203 IGFGDTEQIPFVSRNPSF---VFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPV 373 + FGD+EQIPFV+ S F ++ + R+ T+R PAD T L + K K + Sbjct: 722 LLFGDSEQIPFVNIVESLQPAKFLKLEVDAREVRE-TTYRCPADVTATLATLYKKKK--I 778 Query: 374 KTNSRVLRSIEVVPINSPVSVE-RNTNALYLCHTQAEKAVLKAQTHLKGCDNIF------ 532 T S+VL+S+ + S +V + ++ +L QA+KA L D+++ Sbjct: 779 VTKSKVLKSVTSKSLASASAVSGLDPHSWHLTMYQADKAELVRVARTNQMDDVWIKEHIK 838 Query: 533 TTHEAQG-----------KTFDNVYF 577 T HEAQG KTFD F Sbjct: 839 TVHEAQGISVPHVKLYRFKTFDQPLF 864 [195][TOP] >UniRef100_B9VB32 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB32_9CLOS Length = 3116 Score = 79.7 bits (195), Expect = 1e-13 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 28/218 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151 +N++S E+ + I +++ + T DSYLM+ + Q L DECF+ Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793 Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301 HAG + A C V+ FGD++QI ++ RN +F+ H++ G+V Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 2849 Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481 ++R P D +++ ++ S S+ + IN V + A Y+ +TQAE Sbjct: 2850 -SYRCPWDICEWPSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908 Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571 K L Q HL K + T HE QG+T+ V Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944 [196][TOP] >UniRef100_P90211 Replicase small subunit n=1 Tax=Obuda pepper virus RepID=RDRP_TMOB Length = 1616 Score = 79.7 bits (195), Expect = 1e-13 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 9/176 (5%) Frame = +2 Query: 71 IRTCDSYLMSAS---AVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241 ++T DS+LM+ + +RL DE + H G VY L+ C+E FGDT+QIP+++ Sbjct: 881 VKTVDSFLMNLGKGPVCQFKRLFVDEGLMLHPGCVYFLVKLSLCNEAFVFGDTQQIPYIN 940 Query: 242 RNPSFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412 R +F F H + + E++ T R P D T+ L + + V T S+ RS+ + Sbjct: 941 RVQNFPFPQHFSKLIVDETEKRRTTLRCPVDVTHFLNQCY---DGAVTTTSKTQRSVGLE 997 Query: 413 PINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + T L + TQ++K + + +G ++ T HE QG+T++ V Sbjct: 998 VVGGAAVMNPVTKPLKGKIVTFTQSDKLTMLS----RGYQDVNTVHEIQGETYEEV 1049 [197][TOP] >UniRef100_Q91E35 Replicase large subunit n=2 Tax=Pepper mild mottle virus RepID=Q91E35_9VIRU Length = 1612 Score = 79.3 bits (194), Expect = 2e-13 Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ + Q RL DE + H G V ++ CSE +GDT+QIP+++R Sbjct: 884 VRTVDSFLMNYGRGQCQFKRLFLDEGLMLHPGCVNFLVGMSLCSEAFIYGDTQQIPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + + + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDVVETRRTTLRCPADITFFLNQRY---EGQVMCASSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [198][TOP] >UniRef100_Q8UYT4 1a protein n=1 Tax=Tomato aspermy virus RepID=Q8UYT4_TAV Length = 993 Score = 79.3 bits (194), Expect = 2e-13 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 17/207 (8%) Frame = +2 Query: 2 SNRSSADELKETI-DCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175 +N+ SA ++++ + +C+ + ++RT DS LM+ + + QR++ DE L H G + A Sbjct: 738 ANKKSALDVRQALFNCTDSKEATTFVRTADSILMNDTN-EVQRVLVDEVVLLHFGQLCAV 796 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328 + I FGD+EQI F SR+ SF RH + + + T+RSP D A Sbjct: 797 MSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDETDTADTTFRSPQDVIKVVKCMA 856 Query: 329 TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508 + L+K + + S+V RS+ + S V+ + Y+ TQA+K L+ + Sbjct: 857 SKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLTEDRFYITMTQADKTALRTRAR 916 Query: 509 LKGCDNIF------TTHEAQGKTFDNV 571 N F TTHE+QG + D+V Sbjct: 917 ELNMSNDFIEHRIKTTHESQGVSEDHV 943 [199][TOP] >UniRef100_Q8JTI3 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q8JTI3_9CLOS Length = 1112 Score = 79.3 bits (194), Expect = 2e-13 Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175 +N S+ ++ ++ T+ + Y RT DS +M S A + + DECFL HAG + Sbjct: 843 ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRAGRCDTVCIDECFLVHAGELKIC 902 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346 A LAG EV +GD++QIPF++R SF ++ + KV ++ +++R P+D L + Sbjct: 903 AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 962 Query: 347 YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499 ++KR VK +SR RS+ I+S V+ +++ TQ EK ++ Sbjct: 963 --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSVTDVDMENGDVFVTFTQDEKHMVSN 1020 Query: 500 QT---HLKGCDNIFTTHEAQGKT 559 + LK N T HE QGKT Sbjct: 1021 EAKARKLKVSSN--TVHEIQGKT 1041 [200][TOP] >UniRef100_O71209 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine leafroll-associated virus 2 RepID=O71209_9CLOS Length = 2473 Score = 79.3 bits (194), Expect = 2e-13 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN Sbjct: 2153 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2212 Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 + L V+ + I++R P D L + VK S S+ + Sbjct: 2213 LDKCLYGDLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2272 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571 INS + + + +LC Q+EK + KG N+ T HEAQG+T+ V Sbjct: 2273 INSVDDLVPDVGSTFLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARV 2326 [201][TOP] >UniRef100_B7U5T5 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2 RepID=B7U5T5_9CLOS Length = 2936 Score = 79.3 bits (194), Expect = 2e-13 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 I T D+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN Sbjct: 2616 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2675 Query: 251 SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 + L V+ + I++R P D L + VK S S+ + Sbjct: 2676 LDKCLYGDLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2735 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571 INS + + + +LC Q+EK + KG N+ T HEAQG+T+ V Sbjct: 2736 INSVDDLVPDVGSTFLCMLQSEKLEISKHFIRKGLPKLNVLTVHEAQGETYARV 2789 [202][TOP] >UniRef100_A8RS49 Polyprotein n=1 Tax=Plum bark necrosis stem pitting-associated virus RepID=A8RS49_9CLOS Length = 2343 Score = 79.3 bits (194), Expect = 2e-13 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 16/189 (8%) Frame = +2 Query: 53 LTKLHYIRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTE 223 L K+ +RT DS L++ + ++ DEC+L HAG + A +L S+V +GD Sbjct: 2089 LLKIIRVRTVDSALINFDNSPIYTNCEMLIDECYLPHAGQLQAIFSLYTPSKVSMYGDRH 2148 Query: 224 QIPFVSRNPSFV---FRHHKLTGKVERKLITWRSPADATY---CLEKYFYK-NKRPVKTN 382 QIPF+ R FV H+ K L ++R PAD Y C+ K K V T Sbjct: 2149 QIPFIPRTEGFVCTRAEHNIDEDKYSEVLKSYRCPADICYWMNCVAKAPEKVYSGLVTTF 2208 Query: 383 SRVLRSIEVVP-INSPVSVERNTNALYLCHTQAEKA-----VLKAQTHLKGCDNIFTTHE 544 ++VLRS+ +P P + + NA+ L TQA+K V A+ +K ++ T HE Sbjct: 2209 NKVLRSVVKIPSAVIPSHLIKEANAI-LTFTQADKEMAFKFVAGAKLGMKQKIHVSTIHE 2267 Query: 545 AQGKTFDNV 571 AQGKTF+NV Sbjct: 2268 AQGKTFENV 2276 [203][TOP] >UniRef100_P28931 Methyltransferase n=1 Tax=Tomato aspermy virus RepID=ORF1A_TAV Length = 993 Score = 79.3 bits (194), Expect = 2e-13 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 17/207 (8%) Frame = +2 Query: 2 SNRSSADELKETI-DCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175 +N+ SA ++++ + +C+ + ++RT DS LM+ + + QR++ DE L H G + A Sbjct: 738 ANKKSALDVRQALFNCTDSKEATTFVRTADSILMNDTN-EVQRVLVDEVVLLHFGQLCAV 796 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328 + I FGD+EQI F SR+ SF RH + + + T+RSP D A Sbjct: 797 MSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDETDTADTTFRSPQDVIKVVKCMA 856 Query: 329 TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508 + L+K + + S+V RS+ + S V+ + Y+ TQA+K L+ + Sbjct: 857 SKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLTEDRFYITMTQADKTALRTRAR 916 Query: 509 LKGCDNIF------TTHEAQGKTFDNV 571 N F TTHE+QG + D+V Sbjct: 917 ELNMSNDFIEHRIKTTHESQGVSEDHV 943 [204][TOP] >UniRef100_Q5I2N9 Replicase large subunit n=2 Tax=Pepper mild mottle virus RepID=Q5I2N9_9VIRU Length = 1612 Score = 79.0 bits (193), Expect = 3e-13 Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 10/177 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244 +RT DS+LM+ Q RL DE + H G V ++ CSE +GDT+Q P+++R Sbjct: 884 VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQTPYINR 943 Query: 245 NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409 +F + H VE + T R PAD T+ L + K + V S V RS+ EV Sbjct: 944 VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000 Query: 410 V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + +PVS + + TQ++K++L + +G +++ T HE QG+TF++V Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051 [205][TOP] >UniRef100_C7B977 ORF 1a/1b fusion protein n=2 Tax=Tomato infectious chlorosis virus RepID=C7B977_9CLOS Length = 2394 Score = 79.0 bits (193), Expect = 3e-13 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 20/187 (10%) Frame = +2 Query: 71 IRTCDSYLMSA-SAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247 +RT DS LM+ + ++ + FDE ++ H+G A + + +GD Q+P+++RN Sbjct: 1642 VRTYDSLLMNTPNVIELDKAYFDEAYMIHSGQFLVCAAKLKYNNLYCYGDVNQLPYINRN 1701 Query: 248 PSFVFRHHKLTGKVERKL----ITWRSPADATYCLE-------KYFY----KNKRPVKTN 382 P +V +H + + +L T+R PAD Y L K Y KN P Sbjct: 1702 P-YVTDYHSFSIFEDVELNHDDKTFRCPADVCYLLSNLKNDAGKPLYPRGVKNSNP---G 1757 Query: 383 SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLK---GCDN-IFTTHEAQ 550 S+V+RS EV +N +E + YL TQ EK ++ Q H+ GC++ + T HEAQ Sbjct: 1758 SKVIRSCEVEGVNGVNQIEIQKDVKYLTFTQDEK--IELQHHIARSGGCEHEVNTVHEAQ 1815 Query: 551 GKTFDNV 571 G TF +V Sbjct: 1816 GCTFPSV 1822 [206][TOP] >UniRef100_Q6PY89 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus RepID=Q6PY89_9VIRU Length = 1612 Score = 78.6 bits (192), Expect = 3e-13 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934 Query: 251 SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H T E + ++ R PAD T+ + K V S V+RS++ + Sbjct: 935 NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTSDVIRSVDAEVVR 991 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571 + L + TQ++KA LK + + + + T HE QG+TF++V Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEVNTVHEIQGETFEDV 1046 [207][TOP] >UniRef100_Q5I5A7 1a protein (Fragment) n=1 Tax=Beet pseudo-yellows virus RepID=Q5I5A7_9CLOS Length = 456 Score = 78.6 bits (192), Expect = 3e-13 Identities = 59/197 (29%), Positives = 85/197 (43%), Gaps = 14/197 (7%) Frame = +2 Query: 23 ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199 E+ + +T H Y T DS LM L DE F+ H G +A L C Sbjct: 238 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQS 297 Query: 200 VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370 + FGD QIP+++R P+ V H +T +E I++R P D Y L P Sbjct: 298 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 357 Query: 371 V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520 + +N LRS+ V P+NSP ++ ++ TQ EK + LK Sbjct: 358 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 417 Query: 521 DNIFTTHEAQGKTFDNV 571 + T +E QG TF +V Sbjct: 418 KSANTVNEVQGGTFPSV 434 [208][TOP] >UniRef100_B3FQ64 Polyprotein (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3 RepID=B3FQ64_9CLOS Length = 2233 Score = 78.6 bits (192), Expect = 3e-13 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Frame = +2 Query: 119 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298 +R++ DE ++ H GL+ G SE + FGD QIPF++R F K E Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFAIGASEGLFFGDINQIPFINREKVFRMDCAAFVPKKESV 2063 Query: 299 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448 + T +R P D Y L + Y K + V+RS+ PI + V Sbjct: 2064 VYTSKSYRCPLDVCYLLSSVTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123 Query: 449 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571 +YLC TQ EK+ +K KG + + T HEAQGKTF +V Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDV 2165 [209][TOP] >UniRef100_A9EEU4 129K replicase protein n=1 Tax=Cucumber green mottle mosaic virus RepID=A9EEU4_9VIRU Length = 1144 Score = 78.6 bits (192), Expect = 3e-13 Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%) Frame = +2 Query: 47 SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226 SP+ +RT DS++M+ K + DE + H GL+ A ++GC + FGD +Q Sbjct: 905 SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964 Query: 227 IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397 IPF++R +F + T VER+ +T R P + T L + K V T S V+ Sbjct: 965 IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRELTSFLNTIY---KAAVATTSPVVH 1021 Query: 398 SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 S++ + ++ + + + TQ++K L G +++ T HE QG+TF+ Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076 [210][TOP] >UniRef100_Q6VRA8 ORF 1a/1b fusion polyprotein n=2 Tax=Beet pseudo-yellows virus RepID=Q6VRA8_9CLOS Length = 2441 Score = 78.2 bits (191), Expect = 4e-13 Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 14/197 (7%) Frame = +2 Query: 23 ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199 E+ + +T H Y T DS LM L DE F+ H G +A L C Sbjct: 1673 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQS 1732 Query: 200 VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370 + FGD QIP+++R P+ V H +T +E I++R P D Y L P Sbjct: 1733 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 1792 Query: 371 V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520 + +N LRS+ V P+NSP ++ ++ TQ EK + LK Sbjct: 1793 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 1852 Query: 521 DNIFTTHEAQGKTFDNV 571 + T +E QG TF V Sbjct: 1853 KSANTVNEVQGGTFPTV 1869 [211][TOP] >UniRef100_C0MNB2 1a protein n=1 Tax=Gayfeather mild mottle virus RepID=C0MNB2_9BROM Length = 988 Score = 78.2 bits (191), Expect = 4e-13 Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 17/207 (8%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTK--LHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175 +N+ SA ++++ + S +K ++RT DS L++ A R++ DE L H G + A Sbjct: 733 ANKKSALDVRQALFNSTDSKEATTFVRTADSVLLN-DASDVSRVLIDEVVLLHFGQLCAV 791 Query: 176 ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328 I FGD+EQI F SR+ SF R+ K L +V T+RSP D A Sbjct: 792 MAKLKAVRAICFGDSEQIAFNSRDASFDMRNSKLLPDEVSSADTTFRSPQDVVPIVKLMA 851 Query: 329 TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508 T L K + + S+V RS+ + S V+ + + Y+ TQA+KA L ++ Sbjct: 852 TKALPKGTHTKYTRWVSQSKVQRSVSTRSVASVTMVDLSEDRFYITMTQADKAALISRAK 911 Query: 509 LKGC------DNIFTTHEAQGKTFDNV 571 +NI TTHE+QG + D+V Sbjct: 912 ELNMSKRFVENNIKTTHESQGISEDHV 938 [212][TOP] >UniRef100_B2C4F9 Methyl transferase/helicase n=1 Tax=Grapevine leafroll-associated virus 3 RepID=B2C4F9_9CLOS Length = 2237 Score = 78.2 bits (191), Expect = 4e-13 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Frame = +2 Query: 119 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298 +R++ DE ++ H GL+ G SE + FGD QIPF++R F K E Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063 Query: 299 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448 + T +R P D Y L + Y K + V+RS+ PI + V Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123 Query: 449 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571 +YLC TQ EK+ +K KG + + T HEAQGKTF +V Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDV 2165 [213][TOP] >UniRef100_Q88920 Replicase small subunit n=1 Tax=Turnip vein-clearing virus RepID=RDRP_TVCV Length = 1601 Score = 78.2 bits (191), Expect = 4e-13 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 6/171 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM S +RL DE + H G V L+ C +GDT+QIPF+ R Sbjct: 876 VRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPFICRVA 935 Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H + + E + +T R PAD TY L K K V S V RS++ + Sbjct: 936 NFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVR 992 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 ++ T L L TQA+K L KG ++ T HE QG+T++ Sbjct: 993 GKGALNPITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYE 1039 [214][TOP] >UniRef100_Q65715 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65715_BSMV Length = 1138 Score = 77.8 bits (190), Expect = 6e-13 Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Frame = +2 Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169 R++ D+L+E + + T H +RT DS L++ +A R FDE H G + Sbjct: 863 RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 922 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337 A G SE++ GD Q+P + R F+ T + KL ++R P D A Y Sbjct: 923 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 982 Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484 K FYK K + V T++ V RS+ +P V V +NT+ YL QAEK Sbjct: 983 SAKEFYKVKGIPQKVTTSNSVKRSLYARGETTPERFVSLLDVPVRKNTH--YLTFLQAEK 1040 Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571 L + KG ++I T HEAQG T++NV Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071 [215][TOP] >UniRef100_Q3YFN1 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus RepID=Q3YFN1_9VIRU Length = 1617 Score = 77.8 bits (190), Expect = 6e-13 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934 Query: 251 SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H T E + ++ R PAD T+ + K V + V+RS++ + Sbjct: 935 NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571 + L + TQ++KA LK + + + I T HE QG+TF++V Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046 [216][TOP] >UniRef100_A1YLW4 Replicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1 RepID=A1YLW4_9CLOS Length = 381 Score = 77.8 bits (190), Expect = 6e-13 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 16/164 (9%) Frame = +2 Query: 128 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 298 + DE ++ H G+ G EVI +GD QIPF++R +FV + + +E Sbjct: 146 LIDEVYMLHKGMFQLTVAAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYT 205 Query: 299 LITWRSPADATYCLEKY-------FYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 457 I++R PAD Y L Y N ++R LRS E VPI +P + Sbjct: 206 DISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADV 265 Query: 458 YLCHTQAEKAVLK---AQTHL---KGCDNIFTTHEAQGKTFDNV 571 YL TQ EKA ++ A+ + K ++ TTHEAQGKT+ +V Sbjct: 266 YLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDV 309 [217][TOP] >UniRef100_P89659 Replicase small subunit n=3 Tax=Odontoglossum ringspot virus RepID=RDRP_ORSVC Length = 1612 Score = 77.8 bits (190), Expect = 6e-13 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934 Query: 251 SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H T E + ++ R PAD T+ + K V + V+RS++ + Sbjct: 935 NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571 + L + TQ++KA LK + + + I T HE QG+TF++V Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046 [218][TOP] >UniRef100_O71188 P_protease/methyl transferase/helicase (Fragment) n=2 Tax=Grapevine leafroll-associated virus 3 RepID=O71188_9CLOS Length = 2233 Score = 77.0 bits (188), Expect = 1e-12 Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 11/162 (6%) Frame = +2 Query: 119 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298 +R++ DE + H GL+ G SE + FGD QIPF++R F K E Sbjct: 2004 KRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063 Query: 299 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448 + T +R P D Y L + Y K + V+RS+ PI + V Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123 Query: 449 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571 +YLC TQ EK+ +K KG + + T HEAQGKTF +V Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDV 2165 [219][TOP] >UniRef100_A0ZXL9 Polyprotein (Fragment) n=1 Tax=Fig leaf mottle-associated virus 1 RepID=A0ZXL9_9CLOS Length = 274 Score = 77.0 bits (188), Expect = 1e-12 Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 14/179 (7%) Frame = +2 Query: 74 RTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 RT DS ++A V A+ ++ DECFL H GL+ L+G +V +GD +QIPF++R Sbjct: 30 RTIDSLAINALRVGHAKVVLIDECFLVHFGLLKVVIALSGAHQVFLYGDRQQIPFINRVQ 89 Query: 251 SFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKR-------PVKTN--SRVL 394 +F + ++ GK + +K +++R P D C K++R VK +R Sbjct: 90 TFKCNNSEIDGKRMQIIKKNVSYRCPGD--ICKRLSEMKDERGNLCYPQGVKKGNPNRPD 147 Query: 395 RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDN 568 RSIE+ I S V+ + + L TQ EK + + + N + T HEAQGK N Sbjct: 148 RSIEMFKITSEADVDVRPDDIVLTFTQDEKKKMAEELRKRRLKNMVKTVHEAQGKEAGN 206 [220][TOP] >UniRef100_A0PA51 Replicase large subunit n=2 Tax=Cucumber mottle virus RepID=A0PA51_9VIRU Length = 1672 Score = 77.0 bits (188), Expect = 1e-12 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 6/180 (3%) Frame = +2 Query: 50 PLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQI 229 P+ +RT DS++M+ K L DE + H GL+ + +AG +V FGD +QI Sbjct: 928 PVATHDNVRTFDSFIMNKKPYKFTTLWVDEGLMVHTGLLNFSINIAGVKKVFVFGDRKQI 987 Query: 230 PFVSRNPSF---VFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRS 400 PF++R +F V + VER+ +T R P D T L + + V T S V S Sbjct: 988 PFINRVMNFDYPVELSKLIVDNVERRDVTKRCPVDVTKFLNEVY---PNAVSTTSDVFYS 1044 Query: 401 IEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + P + A + TQ++K L+ G ++ T HE QG+TFD V Sbjct: 1045 LNAKRVAGPGLLRPELTAFKGKIVTFTQSDKFTLEK----AGYTDVNTVHEIQGETFDEV 1100 [221][TOP] >UniRef100_Q84133 Replicase small subunit n=2 Tax=Odontoglossum ringspot virus RepID=RDRP_ORSVS Length = 1612 Score = 77.0 bits (188), Expect = 1e-12 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 8/175 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +L DE + H G V L+ C E + FGD EQIPF++R Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFINRVA 934 Query: 251 SFVF-RHHKLTGKVERKL--ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + +H + T R++ ++ R PAD T+ + K V + V+RS++ + Sbjct: 935 NFPYPKHFRYTCLYHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571 + L + TQ++KA LK + + + I T HE QG+TF++V Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046 [222][TOP] >UniRef100_Q9Q703 P348 n=1 Tax=Beet yellows virus RepID=Q9Q703_9CLOS Length = 3090 Score = 76.6 bits (187), Expect = 1e-12 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 22/212 (10%) Frame = +2 Query: 2 SNRSSADELKETIDC-------SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAG 160 +N+SS +E+ ++ +PL I T DSYLM+ + + L DECF+ HAG Sbjct: 2277 ANKSSREEILAKVNRIVLDEGDTPLQTRDRILTIDSYLMNNRGLTCKVLYLDECFMVHAG 2336 Query: 161 LVYAAATLAGCSEVIGFGDTEQIPFVSRNP----------SFVFRHHKLTGKVERKLITW 310 A C I FGD+ QI ++ RN FV ++ G+V ++ Sbjct: 2337 AAVACIEFTKCDSAILFGDSRQIHYIDRNELDTAVLSDLNRFVDDESRVYGEV-----SY 2391 Query: 311 RSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAV 490 R P D L ++ K S S++V I S VE ++ +YL Q+EK Sbjct: 2392 RCPWDVCAWLSTFYPKTVATTNLVSAGQSSMQVREIESVDDVEYSSEFVYLTMLQSEKKD 2451 Query: 491 L-----KAQTHLKGCDNIFTTHEAQGKTFDNV 571 L K + T HEAQG+T+ V Sbjct: 2452 LLKSFGKRSRSSVEKPTVLTVHEAQGETYRKV 2483 [223][TOP] >UniRef100_Q6JGW4 ORF 1a/1b fusion polyprotein n=2 Tax=Strawberry pallidosis-associated virus RepID=Q6JGW4_9CLOS Length = 2451 Score = 76.6 bits (187), Expect = 1e-12 Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 13/181 (7%) Frame = +2 Query: 68 YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247 Y+ T DSYLM K Q++ DE F+ HAG A L V +GD QIPF++R Sbjct: 1699 YVTTYDSYLMKNKKNKIQKVYCDEVFMVHAGEWIACMNLIENDYVRCYGDKNQIPFINRV 1758 Query: 248 PSFVFR---HHKLTGKVERKLITWRSPADATYCL--------EKYFYKNKRPVKTNSRVL 394 P+ L ++ +++R P D Y L K + P NS++L Sbjct: 1759 PNTTCHLSFDLYLKFQMIHDNVSYRCPVDVCYLLSNLTDPIGNKLYPNGVYPAGDNSKIL 1818 Query: 395 RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT--HLKGCDNIFTTHEAQGKTFDN 568 RS++VV IN ++ + Y+ TQ EK + T +K T +E QG TF Sbjct: 1819 RSVDVVGINCAEDLKPDEKKKYITFTQYEKEEVSKITGKKMKVSGTANTVNEVQGGTFPK 1878 Query: 569 V 571 V Sbjct: 1879 V 1879 [224][TOP] >UniRef100_Q2A077 Methyltransferase/helicase protein (Fragment) n=1 Tax=Grapevine leafroll associated virus 9 RepID=Q2A077_9VIRU Length = 2045 Score = 76.6 bits (187), Expect = 1e-12 Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 26/216 (12%) Frame = +2 Query: 2 SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSA---SAVKAQRLIFDECFLQHAGLVYA 172 S+R++A+ L E D K + T DS++ S S+ + ++ DEC++ HAGL Sbjct: 1768 SSRNAAESLNEFWDSEICNKKVVVMTVDSFVFSGGRFSSKNVETVLIDECYMSHAGLCIL 1827 Query: 173 AATLAGCSEVIGFGDTEQIPFVSRNPSF--VFRHHKLTGKV-ERKLITWRSPADATYCLE 343 A S + +GD Q+PF++RNP F K G + KL+++R PAD Y + Sbjct: 1828 IAAATNPSSLSFYGDRRQVPFINRNPIFRDTMGMLKTAGNLYTEKLLSFRCPADICYWMS 1887 Query: 344 KY--------FYKNKRPVKTNSRVLRSIEVVP-----INSPVSVERNTNALYLCHTQAEK 484 Y K +SR L+S+ ++P +N V+R + TQ EK Sbjct: 1888 TVDYLKPGGRLYSGKVTTVKDSRPLKSVSIMPFSPDQLNFMKKVDR-----VMTFTQMEK 1942 Query: 485 AVLKAQTHLKGCDN-------IFTTHEAQGKTFDNV 571 A + ++ G + I T E+QG+T+ V Sbjct: 1943 ADMISKFLSAGFGDREEANQLIGTVAESQGETYARV 1978 [225][TOP] >UniRef100_Q0E5F1 Replicase large subunit n=2 Tax=Brugmansia mild mottle virus RepID=Q0E5F1_9VIRU Length = 1612 Score = 76.6 bits (187), Expect = 1e-12 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 9/176 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAV---KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241 ++T DS+LM+ + + L DE + H G V +L C FGDT+QIP+++ Sbjct: 881 VKTVDSFLMNLGKKPLGRVENLFIDEGLMLHPGCVNFLVSLTMCDRAFVFGDTQQIPYIN 940 Query: 242 RNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE-- 406 R +F + H T +VE + +T R PAD T+ L + + V +S V +S+ Sbjct: 941 RVQNFPYPKHFATLEVDEVETRRVTMRCPADVTHFLNERY---SGTVMCSSGVQKSVSSE 997 Query: 407 -VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 +V S + + L TQ++K L +G +++ T HE QG+T+++V Sbjct: 998 ILVGAGSVNPITKPLKGKILTFTQSDKFALTE----RGYEDVNTVHEVQGETYEDV 1049 [226][TOP] >UniRef100_O89906 Fusion protein n=1 Tax=Beet yellows virus RepID=O89906_9CLOS Length = 3070 Score = 76.6 bits (187), Expect = 1e-12 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 22/212 (10%) Frame = +2 Query: 2 SNRSSADELKETIDC-------SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAG 160 +N+SS +E+ ++ +PL I T DSYLM+ + + L DECF+ HAG Sbjct: 2277 ANKSSREEILAKVNRIVLDEGDTPLQTRDRILTIDSYLMNNRGLTCKVLYLDECFMVHAG 2336 Query: 161 LVYAAATLAGCSEVIGFGDTEQIPFVSRNP----------SFVFRHHKLTGKVERKLITW 310 A C I FGD+ QI ++ RN FV ++ G+V ++ Sbjct: 2337 AAVACIEFTKCDSAILFGDSRQIHYIDRNELDTAVLSDLNRFVDDESRVYGEV-----SY 2391 Query: 311 RSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAV 490 R P D L ++ K S S++V I S VE ++ +YL Q+EK Sbjct: 2392 RCPWDVCAWLSTFYPKTVATTNLVSAGQSSMQVREIESVDDVEYSSEFVYLTMLQSEKKD 2451 Query: 491 L-----KAQTHLKGCDNIFTTHEAQGKTFDNV 571 L K + T HEAQG+T+ V Sbjct: 2452 LLKSFGKRSRSSVEKPTVLTVHEAQGETYRKV 2483 [227][TOP] >UniRef100_A3FG29 Replicase large subunit n=2 Tax=Rehmannia mosaic virus RepID=A3FG29_9VIRU Length = 1616 Score = 76.6 bits (187), Expect = 1e-12 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 9/176 (5%) Frame = +2 Query: 71 IRTCDSYLMSASAV---KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241 +RT DS++M+ V + +RL DE + H G V +++ C +GDT+QIP+++ Sbjct: 882 VRTVDSFMMNYGKVARCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYVYGDTQQIPYIN 941 Query: 242 RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412 R F + H KL +VE + T R PAD T+ L K + + V + S V RS+ Sbjct: 942 RVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKRSVSQE 998 Query: 413 PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 ++ ++ + L+ L TQ++K L + +G ++ T HE QG+T+ +V Sbjct: 999 MVSGAATINPISKPLHGKVLTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDV 1050 [228][TOP] >UniRef100_Q88604 Replicase large subunit n=2 Tax=Tobacco mosaic virus RepID=Q88604_9VIRU Length = 1601 Score = 76.3 bits (186), Expect = 2e-12 Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 6/171 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 + T DS+LM S +RL DE + H G V L+ C +GDT+QIPF+ R Sbjct: 876 VSTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPFICRVA 935 Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H + + E + +T R PAD TY L K K V S V RS++ + Sbjct: 936 NFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVR 992 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 ++ T L L TQA+K L KG ++ T HE QG+T++ Sbjct: 993 GKGALNPITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYE 1039 [229][TOP] >UniRef100_Q65716 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65716_BSMV Length = 1138 Score = 76.3 bits (186), Expect = 2e-12 Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 23/211 (10%) Frame = +2 Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169 R++ D+L+E + + T H +RT DS L++ +A R FDE H G + Sbjct: 863 RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 922 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337 A G SE++ GD Q+P + R F+ T + KL ++R P D A Y Sbjct: 923 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 982 Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484 K FYK K + V T + V RS+ +P V V +NT+ YL QAEK Sbjct: 983 SAKEFYKVKGIPQKVTTFNSVKRSLYARGETTPERFVSLLDVPVRKNTH--YLTFLQAEK 1040 Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571 L + KG ++I T HEAQG T++NV Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071 [230][TOP] >UniRef100_A0PA59 Replicase large subunit n=2 Tax=Youcai mosaic virus RepID=A0PA59_9VIRU Length = 1596 Score = 76.3 bits (186), Expect = 2e-12 Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 6/171 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM + +RL DE + H G V L+ C +GDT+QIPF+ R Sbjct: 872 VRTVDSFLMHPPKREFKRLFIDEGLMLHTGCVNFLTLLSHCEVAYVYGDTQQIPFICRVA 931 Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H + + E + +T R PAD T+ L K K V S V RS+ + Sbjct: 932 NFPYPKHFAKLVVDEKEDRRVTLRCPADVTFFLNK---KYDGAVLCTSSVERSVSAEVVR 988 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 ++ T L L TQA+K L KG ++ T HE QG+T++ Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035 [231][TOP] >UniRef100_B2LS13 Replicase large subunit n=2 Tax=Chinese Rape Mosaic Virus RepID=B2LS13_YOMV Length = 1596 Score = 75.9 bits (185), Expect = 2e-12 Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 6/171 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +RL DE + H G V L+ C +GDT+QIPF+ R Sbjct: 871 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 930 Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H + + E + IT R PAD TY L + K V S V RS+ + Sbjct: 931 NFPYPSHFAKLVVDEKEDRRITLRCPADVTYFLNQ---KYDGAVMCTSSVERSVSAEVVR 987 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 ++ T L L TQA+K L KG ++ T HE QG+T++ Sbjct: 988 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1034 [232][TOP] >UniRef100_Q65714 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65714_BSMV Length = 1139 Score = 75.1 bits (183), Expect = 4e-12 Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Frame = +2 Query: 8 RSSADELKETID----CSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169 R++ D+L+E + T H +RT DS L++ + +A R FDE H G + Sbjct: 864 RNATDDLRERFKRKKHLNSKTANHRVRTLDSLLLAEGSCVPQADRFHFDEALKVHYGAIM 923 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337 A G SE++ GD Q+P + R F+ T + KL ++R P D A Y Sbjct: 924 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 983 Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484 K FYK K + V T++ V RS+ +P V V ++T+ YL QAEK Sbjct: 984 SAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKDTH--YLTFLQAEK 1041 Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571 L + KG ++I T HEAQG T++NV Sbjct: 1042 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1072 [233][TOP] >UniRef100_P17595 Alpha-A protein n=1 Tax=Barley stripe mosaic virus RepID=VRNA_BSMV Length = 1139 Score = 75.1 bits (183), Expect = 4e-12 Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Frame = +2 Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169 R++ D+L+E + + T H +RT DS L++ +A R FDE H G + Sbjct: 864 RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 923 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337 A G SE++ GD Q+P + R F+ T + KL ++R P D A Y Sbjct: 924 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 983 Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484 K FYK K + V T++ V RS+ +P V V ++T+ YL QAEK Sbjct: 984 SAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKDTH--YLTFLQAEK 1041 Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571 L + KG ++I T HEAQG T++NV Sbjct: 1042 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1072 [234][TOP] >UniRef100_Q84687 Orf1 protein n=2 Tax=Peanut clump virus RepID=Q84687_9VIRU Length = 1145 Score = 74.7 bits (182), Expect = 5e-12 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT S+++ + + FDE + HAG++Y + EVI GD++QIPF++R Sbjct: 906 VRTVHSFMLKPLSRRFNSFHFDEALMAHAGMIYICGRMLNAREVICQGDSKQIPFINRVE 965 Query: 251 SFVFRHHKLTGKVERKLI--TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP--- 415 ++ VER+ + T+R P D Y L K Y + S+ S++ Sbjct: 966 QISLKYSSF-NVVEREHVRKTYRCPLDIVYYLNKKKYYRGDDIVGYSKTTHSVDTKSKSS 1024 Query: 416 -INSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 S V + + YL QAEK V K +KG + T HEAQGKTF+ V Sbjct: 1025 GFTSLVKLPKEP-VHYLTFLQAEKEEVSKHLAGVKGA-TVSTVHEAQGKTFERV 1076 [235][TOP] >UniRef100_Q85077 Alpha-A protein; N-terminal region (Fragment) n=1 Tax=Poa semilatent virus RepID=Q85077_9VIRU Length = 478 Score = 74.7 bits (182), Expect = 5e-12 Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 19/207 (9%) Frame = +2 Query: 8 RSSADELKETIDCSPLTK----LHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169 R++ D+L+ L L +RT DS L++ + K Q+ FDE H G + Sbjct: 204 RNAMDDLRNKFQKKKLVSKKLSLSRVRTMDSLLLADKDNVPKCQKFHFDEALKVHYGAIL 263 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340 A G +E+I GD Q+P + R + + + KL+++R P D + L Sbjct: 264 FCADRLGATEIIAQGDRAQLPMICRVEGIDLHYTRPDFSRIVISPKLLSYRIPGDVAFYL 323 Query: 341 EKYFYKN--KRPVKTNSRVLRSI----EVVP--INSPVSVERNTNALYLCHTQAEKAVLK 496 Y N + + T ++V RS+ E P S + V + YLC QAEK L Sbjct: 324 SARGYYNGVAQTITTKNKVERSMFARGETTPERFISLLDVPVRRDVQYLCFMQAEKESLI 383 Query: 497 AQTHLKGC--DNIFTTHEAQGKTFDNV 571 A KG ++I T HE+QG TFD+V Sbjct: 384 AYLVPKGVKKESIATIHESQGGTFDHV 410 [236][TOP] >UniRef100_Q84125 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus RepID=Q84125_9VIRU Length = 1596 Score = 74.7 bits (182), Expect = 5e-12 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 8/175 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934 Query: 251 SFVF-RH--HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + +H H + E + ++ R PAD T+ + + + + + TN V+RS++ + Sbjct: 935 NFPYPKHFGHTCLHRREVRRLSLRCPADVTHFMNSKY--DGKFLCTND-VIRSVDAEVVR 991 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNV 571 + L + TQ++KA L + + I T HE QG+TF++V Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDV 1046 [237][TOP] >UniRef100_O10447 Replicase large subunit n=1 Tax=Odontoglossum ringspot virus RepID=O10447_9VIRU Length = 1612 Score = 74.7 bits (182), Expect = 5e-12 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 8/175 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +L DE + H G V L+ C E + FGDTEQIPF++R Sbjct: 875 VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934 Query: 251 SFVF-RH--HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + +H H E + ++ R PAD T+ + K V + V+RS++ + Sbjct: 935 NFPYPKHFGHTCLHHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNV 571 + L + TQ++KA L + + I T HE QG+TF++V Sbjct: 992 GKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDV 1046 [238][TOP] >UniRef100_A0MBW3 Polyprotein 1a n=1 Tax=Raspberry leaf mottle virus RepID=A0MBW3_9CLOS Length = 2819 Score = 74.7 bits (182), Expect = 5e-12 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 12/177 (6%) Frame = +2 Query: 77 TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256 T DSYLM + K+ ++ DECF+ HAG V A T G S + +GD+ QI ++ RN Sbjct: 2496 TVDSYLMHHAYTKSHVVLIDECFMVHAGAVCAVLTFTGASLAVLYGDSRQIHYIHRNDLG 2555 Query: 257 VFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 + H + + +++R P D L + + + + S S+ V I+ Sbjct: 2556 LSLLHDINNFLSDDSRVYGNVSYRCPWDVCAWLSEIYPTRIQSMNEKSAGTSSMSVTEIS 2615 Query: 422 SPVSVERNTNALYLCHTQAEK-------AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 V + Y+ +TQ EK AV ++ K + T HE QG TF +V Sbjct: 2616 CVEDVPLDQKFKYITYTQGEKRDLSKHLAVRATASNCKKVPEVNTVHEVQGDTFAHV 2672 [239][TOP] >UniRef100_Q8V9A6 Replicase large subunit n=2 Tax=Crucifer tobamovirus RepID=Q8V9A6_9VIRU Length = 1597 Score = 74.3 bits (181), Expect = 6e-12 Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 6/171 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +RL DE + H G V ++ C +GDT+QIPF+ R Sbjct: 872 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVA 931 Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H + + E + IT R PAD T+ L K K V S V RS+ + Sbjct: 932 NFPYPKHFARLVVDEKEDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVR 988 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 ++ T L L TQA+K L KG ++ T HE QG+T++ Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035 [240][TOP] >UniRef100_Q70PI7 Polyprotein n=2 Tax=Potato yellow vein virus RepID=Q70PI7_9CLOS Length = 2475 Score = 74.3 bits (181), Expect = 6e-12 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 13/181 (7%) Frame = +2 Query: 68 YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247 Y+RT D+ L+ +K L DECF+ H+G A + + +GD QIP+++R Sbjct: 1723 YVRTYDAVLIKVGRMKLGVLYCDECFMIHSGQFVAVTEIITADRMELYGDKNQIPYLNRV 1782 Query: 248 P---SFVFRHHKLTGKVERKLITWRSPADATYCL--------EKYFYKNKRPVKTNSRVL 394 P S +H L + ++R P D Y L E + K + V N+ +L Sbjct: 1783 PNTTSLYSFNHFLQYDMVHDDKSYRCPPDVCYILSNLRNSSGELLYPKGVKSVNKNANIL 1842 Query: 395 RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGCDNIFTTHEAQGKTFDN 568 RS+EV+ +S ++ Y+ TQ EK + + K D T +E QG TF Sbjct: 1843 RSMEVLKFDSVNDLDGEAGRKYVTFTQPEKEEISRIVSRNKKESDTANTVNEVQGGTFKT 1902 Query: 569 V 571 V Sbjct: 1903 V 1903 [241][TOP] >UniRef100_Q91PA8 Replicase large subunit n=2 Tax=Ribgrass mosaic virus RepID=Q91PA8_RMV Length = 1597 Score = 73.9 bits (180), Expect = 8e-12 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +RL DE + H G V L+ C +GDT+QIPF+ R Sbjct: 872 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 931 Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H + + E + +T R PAD TY L + V S V RS+ + Sbjct: 932 NFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVR 988 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 ++ T L L TQA+K L KG ++ T HE QG+T++ Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035 [242][TOP] >UniRef100_Q7TD02 Replicase large subunit n=2 Tax=Crucifer tobamovirus RepID=Q7TD02_9VIRU Length = 1597 Score = 73.9 bits (180), Expect = 8e-12 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS+LM +RL DE + H G V L+ C +GDT+QIPF+ R Sbjct: 872 VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 931 Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H + + E + +T R PAD TY L + V S V RS+ + Sbjct: 932 NFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVR 988 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 ++ T L L TQA+K L KG ++ T HE QG+T++ Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035 [243][TOP] >UniRef100_Q65853 Helicase (Fragment) n=1 Tax=Beet yellow stunt virus RepID=Q65853_9CLOS Length = 710 Score = 73.9 bits (180), Expect = 8e-12 Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 6/173 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 + T DSYLM+ K L DECF+ HAG V A + V GD+ QI + RN Sbjct: 391 VYTIDSYLMNHLGTKCDVLFVDECFMVHAGAVTAVSNTLVPRSVFFVGDSRQIHHIERNE 450 Query: 251 SFVFRHHKLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415 V L V K +++R P D L K++ S S+ + Sbjct: 451 YDVASFSDLDRLVAAKDRIYGQVSYRCPWDVCGWLSKHYPNTVATTNVESEGKSSLTITE 510 Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNV 571 INS V + YL Q+EK L+ KG + T HEAQG T+ +V Sbjct: 511 INSVDDVVASKRNTYLTFLQSEKKELEKHLAKKGVKATVKTVHEAQGDTYRDV 563 [244][TOP] >UniRef100_A3RF53 Replicase large subunit n=2 Tax=Tobacco mosaic virus RepID=A3RF53_9VIRU Length = 1616 Score = 73.6 bits (179), Expect = 1e-11 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 9/176 (5%) Frame = +2 Query: 71 IRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241 +RT DS++M+ + + +RL DE + H G V +++ C +GDT+QIP+++ Sbjct: 882 VRTVDSFMMNYGKGTRCQFKRLFIDEGLMLHTGCVNFLVSMSLCDIAYVYGDTQQIPYIN 941 Query: 242 RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412 R F + H K+ +VE + T R PAD T+ L K + + V + S V +S+ Sbjct: 942 RVSGFPYPAHFSKIEVDEVETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKKSVSQE 998 Query: 413 PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 ++ ++ + L+ L TQ++K L + +G + T HE QG+T+ +V Sbjct: 999 MVSGAATINPVSKPLHGKILTFTQSDKEALLS----RGYSEVHTVHEVQGETYSDV 1050 [245][TOP] >UniRef100_Q8V9A2 Replicase large subunit n=2 Tax=Crucifer tobamovirus RepID=Q8V9A2_9VIRU Length = 1597 Score = 73.2 bits (178), Expect = 1e-11 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 6/171 (3%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 ++T DS+LM +RL DE + H G V ++ C +GDT+QIPF+ R Sbjct: 872 VKTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVA 931 Query: 251 SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + H + + E + IT R PAD T+ L K K V S V RS+ + Sbjct: 932 NFPYPKHFARLVVDEKEDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVR 988 Query: 422 SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565 ++ T L L TQA+K L KG ++ T HE QG+T++ Sbjct: 989 GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035 [246][TOP] >UniRef100_Q82718 Methyltransferase n=2 Tax=Indian peanut clump virus RepID=Q82718_9VIRU Length = 1130 Score = 72.8 bits (177), Expect = 2e-11 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 7/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT S+++ FDE + HAG++Y + EVI GD++QIPF++R Sbjct: 891 VRTVHSFMLKPLTRGFNSFHFDEALMAHAGMIYICGRMLRAREVICQGDSKQIPFINRVE 950 Query: 251 SFVFRHHKLTGKVERKLI--TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP--- 415 R+ VER+ + T+R P D Y L K Y + S+ S++ Sbjct: 951 QITLRYASF-NVVEREYVRKTYRCPLDVIYYLNKKRYYQGDDIVGFSKTTHSVDTKSKTS 1009 Query: 416 -INSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 S V + + YL QAEK V K +KG + T HEAQGKTF+ V Sbjct: 1010 GFTSLVKLPKEP-VHYLTFLQAEKEEVAKHLAGVKGA-TVSTIHEAQGKTFECV 1061 [247][TOP] >UniRef100_Q65713 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65713_BSMV Length = 1138 Score = 72.8 bits (177), Expect = 2e-11 Identities = 67/211 (31%), Positives = 98/211 (46%), Gaps = 23/211 (10%) Frame = +2 Query: 8 RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169 R++ D+L+E + + H +RT DS L++ +A RL FDE H G + Sbjct: 863 RNATDDLRERFKRKKNLNSKIANHRVRTLDSLLLAEGPCVPQADRLHFDEALKVHYGAIM 922 Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPAD-ATYC 337 A G SE++ GD Q+P + R + + KL ++R P D A Y Sbjct: 923 FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYSKTIINPKLRSYRIPGDVAFYL 982 Query: 338 LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484 K FYK K + V T + V RS+ +P V V ++T+ YL QAEK Sbjct: 983 SAKEFYKVKGIPQKVTTFNSVKRSMYARGETTPDRFVSLLDVPVRKDTH--YLTFLQAEK 1040 Query: 485 AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571 L + KG ++I T HEAQG T++NV Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071 [248][TOP] >UniRef100_B2BZW0 ORF1a n=2 Tax=Bean yellow disorder virus RepID=B2BZW0_9CLOS Length = 2021 Score = 72.8 bits (177), Expect = 2e-11 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 13/181 (7%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 + T DS LM+A R+ DE F+ HAG A +L + + +GD QIP+++R Sbjct: 1775 VYTYDSVLMTAIGANVDRVYCDEVFMVHAGEWAAVMSLFNTNYIRCYGDRNQIPYINRVA 1834 Query: 251 SFVFRHHK---LTGKVERKLITWRSPADATYCLEK--------YFYKNKRPVKTNSRVLR 397 + R K L+ K I++R P D Y L + + P N V+R Sbjct: 1835 HTICRFSKDLYLSFKTIDDNISYRCPVDVCYLLSTLKDEAGNLLYPRGVFPAGDNRNVMR 1894 Query: 398 SIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571 S+++ PI+S + + + T+ E+ + A G ++ T HE QG TF V Sbjct: 1895 SMDIEPISSVYDIHHDITGKCISFTRPERDEVDASMQRAGIIGQSVQTVHEVQGGTFPRV 1954 Query: 572 Y 574 + Sbjct: 1955 F 1955 [249][TOP] >UniRef100_P30738 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain Korean) RepID=RDRP_TMVKR Length = 1616 Score = 72.8 bits (177), Expect = 2e-11 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 9/176 (5%) Frame = +2 Query: 71 IRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241 ++T DS++M+ ++ + +RL DE + H G V T++ C +GDT+QIP+++ Sbjct: 882 VKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVTMSLCEIAYVYGDTQQIPYIN 941 Query: 242 RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412 R F + H KL +VE + T R PAD T+ L + + + V + S V +S+ Sbjct: 942 RVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQE 998 Query: 413 PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571 + + + L+ L TQ++K L + +G ++ T HE QG+T+ +V Sbjct: 999 MVGGAAVINPISKPLHGKILTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDV 1050 [250][TOP] >UniRef100_Q911R4 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus RepID=Q911R4_9VIRU Length = 1670 Score = 72.4 bits (176), Expect = 2e-11 Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Frame = +2 Query: 71 IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250 +RT DS++M+ + L DE + H GL+ ++ SEV FGDT+QIPF++R Sbjct: 935 VRTFDSFVMNLKPYNFKTLWVDEGLMVHTGLLNFCVNISKVSEVKIFGDTKQIPFINRVM 994 Query: 251 SFVF---RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421 +F + + VE++ + R P D T+ L + + PV T+S V+ S+ I Sbjct: 995 NFDYPLELKKIIVDNVEKRYTSKRCPRDVTHYLNEVY---AAPVTTSSAVVHSVSQKKI- 1050 Query: 422 SPVSVER----NTNALYLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDN 568 + V + R N + TQ++K QT LK G ++ T HE QG+T+++ Sbjct: 1051 AGVGLLRPELTNLEGKIITFTQSDK-----QTLLKAGYQDVNTVHEVQGETYES 1099