BB919270 ( RCE25125 )

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[1][TOP]
>UniRef100_P03589 Methyltransferase n=1 Tax=Alfalfa mosaic virus (strain 425 / isolate
            Leiden) RepID=ORF1A_AMVLE
          Length = 1126

 Score =  392 bits (1006), Expect = e-107
 Identities = 191/192 (99%), Positives = 192/192 (100%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT
Sbjct: 865  SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 924

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN
Sbjct: 925  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 984

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K+PVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH
Sbjct: 985  KKPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 1044

Query: 542  EAQGKTFDNVYF 577
            EAQGKTFDNVYF
Sbjct: 1045 EAQGKTFDNVYF 1056

[2][TOP]
>UniRef100_P89033 Putative viral replicase n=1 Tax=Prune dwarf virus RepID=P89033_9BROM
          Length = 1055

 Score =  228 bits (580), Expect = 3e-58
 Identities = 112/192 (58%), Positives = 143/192 (74%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSSA ELKE ++ S L K  +IRTCDSYLM+ +A KA++++FDECF+QHAG++YAAAT
Sbjct: 797  SNRSSAIELKEAVEGSQLVKSRFIRTCDSYLMTNNAPKAKKMLFDECFMQHAGVIYAAAT 856

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            +AG SEVI FGDTEQIPF+SRN  F+ +HH L G   ++ IT+R+PAD  Y L K+FY+ 
Sbjct: 857  IAGVSEVIAFGDTEQIPFISRNDMFLLKHHVLKGDHVKQTITYRNPADTVYALSKFFYRK 916

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K PVKT   +LRSI+V PIN+   VE + +A+Y+ HTQAEKA L A    K C  I+TTH
Sbjct: 917  KTPVKTKRHILRSIKVKPINALSQVEVDASAVYVTHTQAEKASLLATPSFKSC-KIYTTH 975

Query: 542  EAQGKTFDNVYF 577
            E QG +FD V F
Sbjct: 976  EVQGGSFDKVIF 987

[3][TOP]
>UniRef100_C7T303 p1 protein n=1 Tax=Parietaria mottle virus RepID=C7T303_9BROM
          Length = 1097

 Score =  203 bits (516), Expect = 9e-51
 Identities = 110/193 (56%), Positives = 137/193 (70%), Gaps = 1/193 (0%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSS+DELKE + C    K + IRT DSYLM  S   A R++FDECFL HAG VYAAAT
Sbjct: 838  SNRSSSDELKEALTCPDAMK-YRIRTVDSYLMLKSWFSASRMLFDECFLTHAGCVYAAAT 896

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA  SEVI  GDTEQ+PF+SR P F  +HHKL+G++E +  T+R P DATYCL+  FYKN
Sbjct: 897  LAQVSEVIALGDTEQVPFISRLPEFRMQHHKLSGEIETQTTTYRCPRDATYCLKSMFYKN 956

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
            K  VK+ S V RSIE+VPI+SP+ +    + LY+ HT+A+K A+LK     K  +NI TT
Sbjct: 957  K-SVKSASVVERSIELVPISSPIQIPCENDVLYITHTRADKDALLKIPGFKK--ENIKTT 1013

Query: 539  HEAQGKTFDNVYF 577
            HEAQG T+D V +
Sbjct: 1014 HEAQGDTWDKVVY 1026

[4][TOP]
>UniRef100_Q6RK14 P1 protein n=1 Tax=Parietaria mottle virus RepID=Q6RK14_9BROM
          Length = 1098

 Score =  202 bits (515), Expect = 1e-50
 Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSS+DELKE + C    K + IRT DSYLM  S   A R++FDECFL HAG VYAAAT
Sbjct: 839  SNRSSSDELKEALTCPEAMK-YRIRTVDSYLMLKSWFSASRMLFDECFLTHAGCVYAAAT 897

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA  SEVI  GDTEQ+PF+SR P F  +HHKL+G++E +  T+R P DATYCL+  FYKN
Sbjct: 898  LAQVSEVIALGDTEQVPFISRLPEFRMQHHKLSGEIETQTTTYRCPRDATYCLKSMFYKN 957

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
            K  VKT S V RSI++VPI+SP+ +    + LY+ HT+A+K A+LK     K  +NI TT
Sbjct: 958  K-SVKTASVVERSIDLVPISSPIQIPCENDVLYITHTRADKDALLKIPGFKK--ENIKTT 1014

Query: 539  HEAQGKTFDNV 571
            HEAQG T+D V
Sbjct: 1015 HEAQGDTWDKV 1025

[5][TOP]
>UniRef100_Q2PMD3 Replicase n=1 Tax=Strawberry necrotic shock virus RepID=Q2PMD3_9BROM
          Length = 1090

 Score =  202 bits (515), Expect = 1e-50
 Identities = 109/191 (57%), Positives = 137/191 (71%), Gaps = 1/191 (0%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSS+DELK TI+C+   K + IRT DSYLM  +   + RL+FDECFL HAG +YAAAT
Sbjct: 830  SNRSSSDELKSTINCAEAMK-YRIRTVDSYLMLKTWFSSDRLLFDECFLTHAGCIYAAAT 888

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI  GDTEQ+PF+SR P F  +HHKL G +E +  T+R P DAT CL+ +FYK 
Sbjct: 889  LAQVKEVIALGDTEQVPFISRLPEFRVQHHKLCGNIEVQTTTYRCPRDATACLKNFFYK- 947

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
            K+ VK+ SRV RS+E+ PINS V + R  N LY+ HT+A+K A++K    +K  DNI TT
Sbjct: 948  KKTVKSASRVERSLELCPINSAVQIPRVENTLYMTHTRADKDALMKIPGFVK--DNIKTT 1005

Query: 539  HEAQGKTFDNV 571
            HEAQG T+DNV
Sbjct: 1006 HEAQGDTWDNV 1016

[6][TOP]
>UniRef100_B9VV81 p1 protein (Fragment) n=1 Tax=Bacopa chlorosis virus
            RepID=B9VV81_9BROM
          Length = 1054

 Score =  202 bits (514), Expect = 2e-50
 Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSSADELKET+ CS   K + IRT DS+LM  +   A RL+FDECFL HAG VYAAA+
Sbjct: 837  SNRSSADELKETLTCSDAMK-YRIRTVDSFLMLKNWFSADRLLFDECFLTHAGCVYAAAS 895

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI  GDTEQ+PF+SR P F  +HHKL+GK+E +  T+R P DATYCL+  FYK 
Sbjct: 896  LAQVKEVIALGDTEQVPFISRLPEFRMQHHKLSGKIECQTTTYRCPRDATYCLKTQFYKT 955

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
            K  VKT S V RSI+++PI+SP+ +    N LY+ HT+A+K A++K     K   NI TT
Sbjct: 956  K-SVKTASVVERSIDLIPISSPIQIPCEDNVLYITHTRADKDALMKIPGFNK--SNIKTT 1012

Query: 539  HEAQGKTFDNV 571
            HEAQG T+DNV
Sbjct: 1013 HEAQGDTWDNV 1023

[7][TOP]
>UniRef100_Q2QF35 Replicase n=1 Tax=Blackberry chlorotic ringspot virus
            RepID=Q2QF35_9BROM
          Length = 1093

 Score =  199 bits (505), Expect = 2e-49
 Identities = 110/191 (57%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSS+DELK+TIDC+   K + IRT DSYLM  S   + RL+FDECFL HAG VYAAAT
Sbjct: 833  SNRSSSDELKDTIDCAEAMK-YRIRTVDSYLMLKSWFSSDRLLFDECFLTHAGCVYAAAT 891

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI  GDTEQ+PF+SR P F  ++HKL GK+E +  T+R P DAT CL+ +FYK 
Sbjct: 892  LAQVKEVIALGDTEQVPFISRLPEFKVQYHKLCGKIEVQTTTYRCPRDATACLKTFFYKR 951

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTT 538
            K  VK+ SRV RS+E+ PINS V +    N LY+ HT+A+K A++K     K  +NI TT
Sbjct: 952  K-TVKSASRVDRSLELCPINSAVQIPCVENTLYMTHTRADKDALMKIPGFNK--NNIKTT 1008

Query: 539  HEAQGKTFDNV 571
            HEAQG T+DNV
Sbjct: 1009 HEAQGDTWDNV 1019

[8][TOP]
>UniRef100_B7TX62 Replicase n=1 Tax=Tobacco streak virus RepID=B7TX62_9BROM
          Length = 1094

 Score =  199 bits (505), Expect = 2e-49
 Identities = 106/190 (55%), Positives = 134/190 (70%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSS+DELKE IDC  + K + IRT DSYLM  S   A+RL+FDECFL HAG VYAAAT
Sbjct: 836  SNRSSSDELKEVIDCPDVMK-YRIRTVDSYLMLKSWFSAERLLFDECFLTHAGCVYAAAT 894

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI FGDTEQ+PF+SR P F   HHK+ GK++ +  T+R P DAT CL+K+FYKN
Sbjct: 895  LAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKIDVQTTTYRCPRDATACLKKFFYKN 954

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K  VK+ S V RS+E+ PI S + ++   + LY+ HT+A+K  L     +   D I TTH
Sbjct: 955  K-TVKSASVVDRSLELCPIQSVIQIQPERDVLYMTHTRADKETLMRIPGMPK-DRIKTTH 1012

Query: 542  EAQGKTFDNV 571
            EAQG+T+D+V
Sbjct: 1013 EAQGETWDHV 1022

[9][TOP]
>UniRef100_Q5QDM5 Replicase n=1 Tax=Fragaria chiloensis latent virus RepID=Q5QDM5_9BROM
          Length = 1083

 Score =  198 bits (504), Expect = 2e-49
 Identities = 99/192 (51%), Positives = 131/192 (68%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSSA++L   I  + + K  Y+RTCDS+LM+ S   A+++ FDECF+QHAG +YAAAT
Sbjct: 815  SNRSSAEDLSIKIPGTRIVKSRYVRTCDSFLMTNSPPTAKKMFFDECFMQHAGCIYAAAT 874

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA CSEV  +GD EQIPF+SR  S  F H KL GKV ++L+T+R P DAT  L K+ YK 
Sbjct: 875  LARCSEVYAYGDKEQIPFISRCDSIRFTHEKLEGKVVQQLVTYRCPVDATAALSKFLYKK 934

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K+ + T   V RSI +VPIN+   +E +  A+Y+ HTQAEK  L++         +F+TH
Sbjct: 935  KKNIVTRRNVDRSISIVPINAVSQIEIDDKAVYITHTQAEKKALQSADGFSRM-KVFSTH 993

Query: 542  EAQGKTFDNVYF 577
            EA+G TFD VYF
Sbjct: 994  EAEGGTFDKVYF 1005

[10][TOP]
>UniRef100_Q6JE42 Replicase n=1 Tax=Humulus japonicus latent virus RepID=Q6JE42_9BROM
          Length = 1041

 Score =  195 bits (496), Expect = 2e-48
 Identities = 101/191 (52%), Positives = 135/191 (70%), Gaps = 1/191 (0%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNR+++ EL+E I  SPL K  Y+RTCDSYLM++   KA+RL+FDECF++HAG VYAAAT
Sbjct: 784  SNRNASIELREVIKASPLMKAKYVRTCDSYLMASRPEKARRLLFDECFMRHAGFVYAAAT 843

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA C EV+ +GDTEQIP +SRNP+F FR HKL G++ ++ +T+R PADA Y L K+FYK 
Sbjct: 844  LAECEEVLAYGDTEQIPEISRNPAFKFRCHKLEGEIVQQTVTYRCPADAVYVLNKHFYKT 903

Query: 362  KRPVKT-NSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538
            KR +KT     +RS+ +  INS  +V  + +ALYL +TQAEK  LK+     G   + T 
Sbjct: 904  KRNIKTKRHNPMRSLNIHAINSVRAVPVDKSALYLTYTQAEKEQLKSA--FPGV-KVLTV 960

Query: 539  HEAQGKTFDNV 571
            HEA+G +   V
Sbjct: 961  HEAEGASVPKV 971

[11][TOP]
>UniRef100_Q997A4 Putative viral replicase p1 n=1 Tax=American plum line pattern virus
            RepID=Q997A4_9BROM
          Length = 1062

 Score =  176 bits (446), Expect = 1e-42
 Identities = 96/193 (49%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNR+SA+EL+  +  S L K   IRT DSYLM+ +   A  + FDECFLQH+G++ AA T
Sbjct: 794  SNRNSAEELRSKVRGSQLVKSRVIRTVDSYLMAKNPPTADVVYFDECFLQHSGVILAAVT 853

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-LITWRSPADATYCLEKYFYK 358
            LA   ++  FGDTEQIPF+SRNP F F+H  LT     + L T+RSPADAT+ L KYFYK
Sbjct: 854  LAKAKKLYAFGDTEQIPFISRNPLFRFKHRFLTSNRRIECLDTFRSPADATFLLGKYFYK 913

Query: 359  NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538
             K  +KT SRV  SI V PI+    +E + +A+Y C+ QAEKA L ++   K  + + T 
Sbjct: 914  KKSQIKTTSRVQPSISVKPISVHDQIEVDKSAIYCCYIQAEKAELLSKPQFKNME-VATI 972

Query: 539  HEAQGKTFDNVYF 577
            HE QG++ D V F
Sbjct: 973  HEKQGESVDKVIF 985

[12][TOP]
>UniRef100_Q9QGH0 Putative methyltransferase/helicase n=1 Tax=Apple mosaic virus
            RepID=Q9QGH0_9BROM
          Length = 1046

 Score =  172 bits (435), Expect = 2e-41
 Identities = 100/193 (51%), Positives = 131/193 (67%), Gaps = 1/193 (0%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSSA EL+E +  SPL+K   +RTCDS+LM+ S +K++R+IFDECFLQHAG VYAAAT
Sbjct: 785  SNRSSAMELREKLVGSPLSKSQRVRTCDSFLMNGSKIKSKRIIFDECFLQHAGCVYAAAT 844

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVER-KLITWRSPADATYCLEKYFYK 358
            +A   E++ FGDT+QIPFVSR P    R+HK++    R   +T+RSPAD T  L K+FY 
Sbjct: 845  IAEAEELVMFGDTQQIPFVSRIPYMKLRNHKVSADERRAHNMTYRSPADTTMALSKWFY- 903

Query: 359  NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTT 538
             K+ ++T +R +RS+ V PI S   V+ N   LY+ HTQAEK  L A T     + + T+
Sbjct: 904  -KKSIRTANRTIRSMIVKPIVSVNQVD-NDFELYITHTQAEKHTLIA-TGKFDKNKVHTS 960

Query: 539  HEAQGKTFDNVYF 577
             EAQG T  NV F
Sbjct: 961  AEAQGMTERNVAF 973

[13][TOP]
>UniRef100_Q99HR1 Viral replicase p1 n=1 Tax=Tulare apple mosaic virus
            RepID=Q99HR1_9BROM
          Length = 1060

 Score =  165 bits (418), Expect = 2e-39
 Identities = 85/190 (44%), Positives = 124/190 (65%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            +NR +A + +E+     + K + +RT DSY+M      A+R++ DECFL H+G++YAAAT
Sbjct: 803  ANRETAKDARESGSIPDVMK-YRVRTLDSYIMLKKWFTAERMLVDECFLVHSGIIYAAAT 861

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   E+I FGDT+QIPFVSR P+F  +H  + G ++ KL+T+R P DAT  L + FYK 
Sbjct: 862  LAQVKEIIAFGDTKQIPFVSRIPTFTLKHPSIKGVLKPKLVTYRCPRDATAVLSEKFYKK 921

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K  VKT + +  S+ ++ INS + +    + LY+ HTQA+K  +     +   +N+ TTH
Sbjct: 922  K--VKTFNPISSSLSLININSGMEIPAERDTLYIMHTQADKCAMLRHPGI-NANNVMTTH 978

Query: 542  EAQGKTFDNV 571
            EAQGKTFDNV
Sbjct: 979  EAQGKTFDNV 988

[14][TOP]
>UniRef100_B7T2J3 Replicase (Fragment) n=1 Tax=Lilac ring mottle virus
           RepID=B7T2J3_9BROM
          Length = 621

 Score =  165 bits (418), Expect = 2e-39
 Identities = 87/177 (49%), Positives = 117/177 (66%), Gaps = 7/177 (3%)
 Frame = +2

Query: 62  LHY-IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238
           LHY +RT DSYLM  +    +RL+ DECFL H+G +YAAATLA   EV+ FGDT+QIPF+
Sbjct: 374 LHYRVRTLDSYLMMKTWFTGERLLVDECFLVHSGAIYAAATLARVKEVLAFGDTKQIPFI 433

Query: 239 SRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418
           SR P+F  RH  L G ++ + +T+R P DAT  LEK+FY  KRP+KT S V  S+++ PI
Sbjct: 434 SRIPTFPIRHASLNGVLKPRNVTFRCPRDATAALEKFFY--KRPIKTASAVSNSMQIHPI 491

Query: 419 NSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN------IFTTHEAQGKTFDNV 571
           +S ++V    N LY+ HTQA+K  L  +  +  C          +TH+AQGKT+DNV
Sbjct: 492 SSVMNVPVEKNTLYITHTQADKCNLLQRNGINACVTTDECALALSTHKAQGKTYDNV 548

[15][TOP]
>UniRef100_Q9IMN1 Replicase 1a (Fragment) n=1 Tax=Hydrangea mosaic virus
           RepID=Q9IMN1_9BROM
          Length = 387

 Score =  162 bits (410), Expect = 2e-38
 Identities = 93/190 (48%), Positives = 121/190 (63%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
           +NR +A + K T    P T L+ +RT DSYLM  +   A RL+ DECFL HAGL+YAAAT
Sbjct: 130 ANRETAKDAK-TSGVIPETLLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 188

Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
           LA   EVI FGDT+QIPFVSR P+   RH  + GK++ + +T+R P D T  L + FY  
Sbjct: 189 LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGKLKPRTMTYRCPRDVTAVLSEKFYNT 248

Query: 362 KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
           K  V T + V  S+E++ INS V +    +ALY+ HT+A+K  LK    +   D + TTH
Sbjct: 249 K--VGTFNPVKTSLELININSGVEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 305

Query: 542 EAQGKTFDNV 571
           EAQGKT DNV
Sbjct: 306 EAQGKTRDNV 315

[16][TOP]
>UniRef100_Q98701 Replicase n=1 Tax=Elm mottle virus RepID=Q98701_9BROM
          Length = 1055

 Score =  162 bits (410), Expect = 2e-38
 Identities = 93/190 (48%), Positives = 121/190 (63%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            +NR +A + K T    P T L+ +RT DSYLM  +   A RL+ DECFL HAGL+YAAAT
Sbjct: 798  ANRETAKDAK-TSGVIPETLLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 856

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI FGDT+QIPFVSR P+   RH  + GK++ + +T+R P D T  L + FY  
Sbjct: 857  LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGKLKPRTMTYRCPRDVTAVLSEKFYNT 916

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K  V T + V  S+E++ INS V +    +ALY+ HT+A+K  LK    +   D + TTH
Sbjct: 917  K--VGTFNPVKTSLELININSGVEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 973

Query: 542  EAQGKTFDNV 571
            EAQGKT DNV
Sbjct: 974  EAQGKTRDNV 983

[17][TOP]
>UniRef100_Q91NQ1 Replicase p1 n=1 Tax=Prunus necrotic ringspot virus
            RepID=Q91NQ1_9BROM
          Length = 1045

 Score =  162 bits (410), Expect = 2e-38
 Identities = 99/188 (52%), Positives = 126/188 (67%), Gaps = 2/188 (1%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSSA EL+E +  S L +   +RT DSYLM+     + R+IFDECFLQHAG VYAAA+
Sbjct: 784  SNRSSAMELREKLPGSQLLRSTRVRTSDSYLMNPKRPSSVRVIFDECFLQHAGCVYAAAS 843

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG--KVERKLITWRSPADATYCLEKYFY 355
            LAG  E++ FGDT+QIPFVSR P F  + H ++   KV   L T+R PADAT  L K+FY
Sbjct: 844  LAGAEELVLFGDTKQIPFVSRIPHFRLKDHLVSADEKVMSNL-TYRCPADATMALSKWFY 902

Query: 356  KNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFT 535
              +R VKT +  LRS+ V PI S   ++R+ + LY+ HTQAEK  L A + +   D +FT
Sbjct: 903  --RRNVKTANTTLRSMSVKPIVSVSQIDRDFD-LYMTHTQAEKHTLIA-SGVVPKDKVFT 958

Query: 536  THEAQGKT 559
            T EAQGKT
Sbjct: 959  TAEAQGKT 966

[18][TOP]
>UniRef100_P89680 Putative viral replicase n=1 Tax=Tobacco streak virus
            RepID=P89680_9BROM
          Length = 1094

 Score =  158 bits (400), Expect = 3e-37
 Identities = 90/190 (47%), Positives = 117/190 (61%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            SNRSS+DELKE IDC  + K + IRT DSYLM  S   A+RL+FDECFL HAG VYAAAT
Sbjct: 836  SNRSSSDELKEVIDCPDVMK-YRIRTVDSYLMLKSWFSAERLLFDECFLTHAGCVYAAAT 894

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI FGDTEQ+PF+SR P F   HHK+ GK+          +   + L K  +  
Sbjct: 895  LAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKIS-CTTDHLQMSKRCHSLFKENFLQ 953

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K+  + + R     E+ PI S + ++   + LY+ HT+A+K  L     +   D I TTH
Sbjct: 954  KQDCEVSERCSSLAELCPIQSVIQIQPERDVLYMTHTRADKETLMRIPGMPK-DRIKTTH 1012

Query: 542  EAQGKTFDNV 571
            EAQG+T+D+V
Sbjct: 1013 EAQGETWDHV 1022

[19][TOP]
>UniRef100_B8RCA3 Replicase n=1 Tax=Asparagus virus 2 RepID=B8RCA3_9BROM
          Length = 1076

 Score =  158 bits (400), Expect = 3e-37
 Identities = 92/190 (48%), Positives = 120/190 (63%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            +NR +A + K T    P   L+ +RT DSYLM  +   A RL+ DECFL HAGL+YAAAT
Sbjct: 798  ANRETAKDAK-TSGVVPDALLYRVRTVDSYLMLKNWFTADRLLVDECFLVHAGLIYAAAT 856

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI FGDT+QIPFVSR P+   RH  + G ++ + IT+R P D T  L + FY  
Sbjct: 857  LARVKEVIAFGDTKQIPFVSRIPTVTLRHASVIGVLKPRTITYRCPRDVTAILSEKFYHT 916

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K  VKT + V  S++++ INS V +    +ALY+ HT+A+K  LK    +   D + TTH
Sbjct: 917  K--VKTFNPVKISLDLININSAVEIPVVKDALYITHTKADKFALKKLPGMGNVD-VLTTH 973

Query: 542  EAQGKTFDNV 571
            EAQGKT DNV
Sbjct: 974  EAQGKTRDNV 983

[20][TOP]
>UniRef100_A5JVP4 Putative viral replicase n=1 Tax=Citrus variegation virus
            RepID=A5JVP4_9BROM
          Length = 1076

 Score =  155 bits (393), Expect = 2e-36
 Identities = 88/190 (46%), Positives = 119/190 (62%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            +NR +A + K +    P   L+ +RT DSYLM  +   A RL+ DECFL HAGL+YAAA 
Sbjct: 798  ANRETAKDAKNS-GIIPDALLYRVRTVDSYLMLKNWFTAGRLLVDECFLVHAGLIYAAAA 856

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI FGDT+QIPFVSR P+   RH  + G ++ + +T+R P D T  L + FY  
Sbjct: 857  LARVKEVIAFGDTKQIPFVSRIPAVTLRHASVIGTLKPRTVTYRCPRDVTAVLSEKFYNT 916

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K  VKT + V  S++++ INS + +    +ALY+ HT+A+K  LK    +   D + TTH
Sbjct: 917  K--VKTFNPVKTSLDLISINSGMEIPVVKDALYISHTKADKFALKRLPGMSNVD-VLTTH 973

Query: 542  EAQGKTFDNV 571
            EAQGKT DNV
Sbjct: 974  EAQGKTRDNV 983

[21][TOP]
>UniRef100_Q66108 Citrus leaf rugose ilarvirus putative viral replicase n=1 Tax=Citrus
            leaf rugose virus RepID=Q66108_9BROM
          Length = 1051

 Score =  155 bits (392), Expect = 2e-36
 Identities = 83/190 (43%), Positives = 120/190 (63%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            +NR +A + +E+     + K + +RT DSYLM      A RL+ DECFL H+G++YAAAT
Sbjct: 789  ANRETARDARESGAIPDVLK-YRVRTLDSYLMLKKWFTADRLLVDECFLVHSGIIYAAAT 847

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            L    E+I FGDT+QIPFVSR P+F  +H  + GK++ K IT+R P DAT  L + FY+ 
Sbjct: 848  LGQVKEIIAFGDTKQIPFVSRIPTFSLKHPSIRGKLKPKTITYRCPRDATAVLSEKFYET 907

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
               VKT +    S+ ++ I+S + +    + LY+ HTQA+K  +     +   DN+ TTH
Sbjct: 908  N--VKTFNPTSSSLSLIDISSSMEIPAEKDTLYIMHTQADKCAMLRHPGINP-DNVMTTH 964

Query: 542  EAQGKTFDNV 571
            EAQGKTF++V
Sbjct: 965  EAQGKTFNHV 974

[22][TOP]
>UniRef100_O57161 Putative replicase n=1 Tax=Spinach latent virus RepID=O57161_9BROM
          Length = 1056

 Score =  153 bits (386), Expect = 1e-35
 Identities = 88/190 (46%), Positives = 119/190 (62%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            +NR +A++ K +    P    + +RT DSYLM  +   A+RL+ DECFL HAGLVYAAAT
Sbjct: 799  ANRETANDAKAS-GVIPKALEYRVRTVDSYLMLRTWFTAERLLVDECFLVHAGLVYAAAT 857

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKN 361
            LA   EVI FGDT+QIPFVSR P+   RH  + G ++ + IT+R P D T  L + FY  
Sbjct: 858  LARVKEVIAFGDTKQIPFVSRIPTVKLRHASVVGTLKPRTITYRCPRDVTAVLSEKFYGT 917

Query: 362  KRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTH 541
            K  VKT + V +S+E+  I+S   +    + LY+ HTQA+K  L     + G + + TTH
Sbjct: 918  K--VKTFNLVKQSLELKNIDSSTEIPVEKDTLYIAHTQADKHALMRLPGMNGIE-VLTTH 974

Query: 542  EAQGKTFDNV 571
            EAQGKT D+V
Sbjct: 975  EAQGKTRDHV 984

[23][TOP]
>UniRef100_Q2F3J8 Replicase (Fragment) n=1 Tax=Blackberry chlorotic ringspot virus
           RepID=Q2F3J8_9BROM
          Length = 197

 Score =  135 bits (339), Expect = 3e-30
 Identities = 68/110 (61%), Positives = 82/110 (74%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
           SNRSS+DELKETI C+ + K + IRT DSYLM  S   + RL+FDECFL HAG +YAAAT
Sbjct: 88  SNRSSSDELKETIKCADVMK-YRIRTVDSYLMLKSWFSSDRLLFDECFLTHAGCIYAAAT 146

Query: 182 LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLITWRSPADAT 331
           LA   EVI  GDTEQ+PF+SR P F  +HHKL+GK+E +  T+R P DAT
Sbjct: 147 LAQVKEVIALGDTEQVPFISRLPEFRVQHHKLSGKIEVQTTTYRCPRDAT 196

[24][TOP]
>UniRef100_Q9IWA9 Replication protein n=2 Tax=Oat golden stripe virus
            RepID=Q9IWA9_9VIRU
          Length = 1853

 Score =  115 bits (289), Expect = 2e-24
 Identities = 76/180 (42%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
 Frame = +2

Query: 59   KLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIP 232
            +L  IRT DSYLM      ++A  + FDE  + HAG+VY  A L G  +VI  GD++QIP
Sbjct: 1097 ELKRIRTVDSYLMHDCGKTLRASVVHFDEALMAHAGMVYFCADLLGAKKVICQGDSQQIP 1156

Query: 233  FVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEV 409
            FV+R  S   ++ KL   + E   +T+RSP D  + L    Y +   V T + VLRS+ V
Sbjct: 1157 FVNRVESISLQYAKLVIDRTESVRMTYRSPIDVAHYLNAKAYYDGGRVTTKNEVLRSMSV 1216

Query: 410  V------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            V      P+NS   V    +  YL  TQAEK  L      KG  ++ T HEAQGKTFDNV
Sbjct: 1217 VGPRGTRPMNSAYCVPYVKDTQYLTFTQAEKDDLFKALRSKGSVSVNTVHEAQGKTFDNV 1276

[25][TOP]
>UniRef100_Q89249 209 kDa readthrough protein n=2 Tax=Soil-borne wheat mosaic virus
            RepID=Q89249_SBWMV
          Length = 1828

 Score =  110 bits (274), Expect = 1e-22
 Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 12/200 (6%)
 Frame = +2

Query: 8    RSSADELKETI----DCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
            + + ++LKE       C+  + L  IRT DS+LM      +A  + FDE  + HAG+VY 
Sbjct: 1053 KEATEDLKEKFMKKHKCAE-SDLKRIRTVDSFLMHDYDKFRAATVHFDEALMAHAGIVYF 1111

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349
             A + G  +VI  GD++QIPF++R  S   ++ KL   + E   +T+RSP D  + L K 
Sbjct: 1112 CADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDETEYVRLTYRSPVDVAHYLTKK 1171

Query: 350  FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
             + +   V T + VLRS++VV      P+ S   V  + +A YL  TQ+EKA L      
Sbjct: 1172 SWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRDAQYLTFTQSEKADLYKALRA 1231

Query: 512  KGCDNIFTTHEAQGKTFDNV 571
            KG   + T HE QGKTFD+V
Sbjct: 1232 KGPVEVNTVHETQGKTFDDV 1251

[26][TOP]
>UniRef100_Q9JAD2 207K protein n=2 Tax=Soil-borne cereal mosaic virus
            RepID=Q9JAD2_9VIRU
          Length = 1816

 Score =  107 bits (267), Expect = 7e-22
 Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
 Frame = +2

Query: 8    RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
            + + ++LKE     + C+  + L  +RT DS+LM      +A  + FDE  + HAG+VY 
Sbjct: 1041 KEATEDLKEKFSKRLKCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
             A + G  +V+  GD++QIPF++R  S   ++ KL     E   +T+RSP D  + L K 
Sbjct: 1100 CADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159

Query: 350  FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
             Y +   V T +  LRS+  V      P+ S   V    +  YL  TQ+EKA L      
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRN 1219

Query: 512  KGCDNIFTTHEAQGKTFDNV 571
            +G  N+ T HE QGKTFDNV
Sbjct: 1220 RGPVNVNTVHETQGKTFDNV 1239

[27][TOP]
>UniRef100_Q9DJG6 Replication protein n=2 Tax=Soil-borne cereal mosaic virus
            RepID=Q9DJG6_9VIRU
          Length = 1816

 Score =  107 bits (266), Expect = 9e-22
 Identities = 72/200 (36%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
 Frame = +2

Query: 8    RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
            + + ++LKE     + C+  T L  +RT DS+LM      +A  + FDE  + HAG+VY 
Sbjct: 1041 KEATEDLKEKFAKRLKCTE-TALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
             A + G   V+  GD++QIPF++R  S   ++ KL     E   +T+RSP D  + L K 
Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159

Query: 350  FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
             Y +   V T +  LRS+  V      P+ S   V  + +  YL  TQ+EKA L      
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219

Query: 512  KGCDNIFTTHEAQGKTFDNV 571
            +G  N+ T HE QGKTFD+V
Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239

[28][TOP]
>UniRef100_Q9JAD3 207K protein n=2 Tax=Soil-borne cereal mosaic virus
            RepID=Q9JAD3_9VIRU
          Length = 1816

 Score =  105 bits (263), Expect = 2e-21
 Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
 Frame = +2

Query: 8    RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
            + + ++LKE     + C+  + L  +RT DS+LM      +A  + FDE  + HAG+VY 
Sbjct: 1041 KEATEDLKEKFSKRLKCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
             A + G  +V+  GD++QIPF++R  S   ++ KL     E   +T+RSP D  + L K 
Sbjct: 1100 CADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159

Query: 350  FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
             Y +   V T +  LRS+  V      P+ S   V    +  YL  TQ+EKA L      
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRN 1219

Query: 512  KGCDNIFTTHEAQGKTFDNV 571
            +G  N+ T HE QGKTF+NV
Sbjct: 1220 RGPVNVNTVHETQGKTFENV 1239

[29][TOP]
>UniRef100_Q9JGK3 152-kDa protein n=1 Tax=Soil-borne wheat mosaic virus
            RepID=Q9JGK3_SBWMV
          Length = 1334

 Score =  105 bits (262), Expect = 3e-21
 Identities = 75/182 (41%), Positives = 97/182 (53%), Gaps = 10/182 (5%)
 Frame = +2

Query: 56   TKLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQI 229
            ++L  IRT DSYLM      ++A  + FDE  + HAG VY  A L G  +VI  GD++QI
Sbjct: 1085 SELGRIRTVDSYLMHDCGKKLRATTVHFDEALMTHAGAVYFCADLLGARKVICQGDSQQI 1144

Query: 230  PFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLE-KYFYKNKRPVKTNSRVLRSI 403
            PFV+R  S   +  KL   K +   +T+RSP D  + L  K FY   R + T + V+RS+
Sbjct: 1145 PFVNRVESIKLQFAKLVIDKTDLIRMTYRSPIDVAHYLNYKSFYTGGR-ITTKNEVVRSM 1203

Query: 404  EVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
             VV      P+ S  SV       YL  TQ EK  L      KG  N+ T HE QGKTFD
Sbjct: 1204 SVVGPRNVRPMTSVYSVPYVPGVQYLTFTQTEKDDLFKALRSKGHVNVNTVHETQGKTFD 1263

Query: 566  NV 571
            +V
Sbjct: 1264 DV 1265

[30][TOP]
>UniRef100_Q9JAD4 207K protein n=2 Tax=Soil-borne cereal mosaic virus
            RepID=Q9JAD4_9VIRU
          Length = 1816

 Score =  105 bits (262), Expect = 3e-21
 Identities = 71/200 (35%), Positives = 104/200 (52%), Gaps = 12/200 (6%)
 Frame = +2

Query: 8    RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
            + + ++LKE     + C+  T L  +RT DS+LM      +A  + FDE  + HAG+VY 
Sbjct: 1041 KEATEDLKEKFAKRLKCTE-TALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
             A + G   V+  GD++QIPF++R  S   ++ KL     E   +T+RSP D  + L K 
Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159

Query: 350  FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
             Y +   V T +  LRS+  V      P+ S   V    +  YL  TQ+EK+ L      
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRGAKPMTSVHCVPYQRDTQYLTFTQSEKSDLYKALRN 1219

Query: 512  KGCDNIFTTHEAQGKTFDNV 571
            +G  N+ T HE QGKTFD+V
Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239

[31][TOP]
>UniRef100_Q9IWB1 Replication protein n=2 Tax=Soil-borne cereal mosaic virus
            RepID=Q9IWB1_9VIRU
          Length = 1816

 Score =  105 bits (261), Expect = 3e-21
 Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
 Frame = +2

Query: 8    RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
            + + ++LKE     + C+  + L  +RT DS+LM      +A  + FDE  + HAG+VY 
Sbjct: 1041 KEATEDLKEKFAKRLRCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
             A + G   V+  GD++QIPF++R  S   ++ KL     E   +T+RSP D  + L K 
Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159

Query: 350  FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
             Y +   V T +  LRS+  V      P+ S   V  + +  YL  TQ+EKA L      
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219

Query: 512  KGCDNIFTTHEAQGKTFDNV 571
            +G  N+ T HE QGKTFD+V
Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239

[32][TOP]
>UniRef100_Q91DN3 Replication protein n=2 Tax=Soil-borne wheat mosaic virus
            RepID=Q91DN3_SBWMV
          Length = 1816

 Score =  105 bits (261), Expect = 3e-21
 Identities = 71/200 (35%), Positives = 105/200 (52%), Gaps = 12/200 (6%)
 Frame = +2

Query: 8    RSSADELKET----IDCSPLTKLHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYA 172
            + + ++LKE     + C+  + L  +RT DS+LM      +A  + FDE  + HAG+VY 
Sbjct: 1041 KEATEDLKEKFAKRLRCTE-SALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYF 1099

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKY 349
             A + G   V+  GD++QIPF++R  S   ++ KL     E   +T+RSP D  + L K 
Sbjct: 1100 CADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKK 1159

Query: 350  FYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
             Y +   V T +  LRS+  V      P+ S   V  + +  YL  TQ+EKA L      
Sbjct: 1160 SYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRDTQYLTFTQSEKADLYKALRN 1219

Query: 512  KGCDNIFTTHEAQGKTFDNV 571
            +G  N+ T HE QGKTFD+V
Sbjct: 1220 RGPVNVNTVHETQGKTFDDV 1239

[33][TOP]
>UniRef100_Q9WJD7 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus
            RepID=Q9WJD7_9VIRU
          Length = 1858

 Score =  104 bits (259), Expect = 6e-21
 Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
 Frame = +2

Query: 62   LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238
            L  IRT DS+LM      +A  + FDE  + HAG+VY  A + G  +VI  GD++QIPF+
Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163

Query: 239  SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412
            +R  S   ++ KL   + E   +T+RSP D  + L K  + +   V T + V+RS++ V 
Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223

Query: 413  -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                 P+ S   V    +A YL  TQ+EK  L      KG   + T HE QGKTFD+V
Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281

[34][TOP]
>UniRef100_Q91QY9 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus
            RepID=Q91QY9_9VIRU
          Length = 1858

 Score =  104 bits (259), Expect = 6e-21
 Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
 Frame = +2

Query: 62   LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238
            L  IRT DS+LM      +A  + FDE  + HAG+VY  A + G  +VI  GD++QIPF+
Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163

Query: 239  SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412
            +R  S   ++ KL   + E   +T+RSP D  + L K  + +   V T + V+RS++ V 
Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223

Query: 413  -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                 P+ S   V    +A YL  TQ+EK  L      KG   + T HE QGKTFD+V
Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281

[35][TOP]
>UniRef100_B3IUH4 p212 n=2 Tax=Soil-borne wheat mosaic virus RepID=B3IUH4_SBWMV
          Length = 1858

 Score =  104 bits (259), Expect = 6e-21
 Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 8/178 (4%)
 Frame = +2

Query: 62   LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFV 238
            L  IRT DS+LM      +A  + FDE  + HAG+VY  A + G  +VI  GD++QIPF+
Sbjct: 1104 LKRIRTVDSFLMHDYDKYRAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFI 1163

Query: 239  SRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV- 412
            +R  S   ++ KL   + E   +T+RSP D  + L K  + +   V T + V+RS++ V 
Sbjct: 1164 NRVESITLQYSKLVIDETEHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVG 1223

Query: 413  -----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                 P+ S   V    +A YL  TQ+EK  L      KG   + T HE QGKTFD+V
Sbjct: 1224 PRDVKPMTSVHCVPYFKDAQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDV 1281

[36][TOP]
>UniRef100_Q9QBU0 Polymerase n=2 Tax=Potato mop-top virus RepID=Q9QBU0_9VIRU
          Length = 1303

 Score =  103 bits (258), Expect = 7e-21
 Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 9/197 (4%)
 Frame = +2

Query: 8    RSSADELKETIDC---SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
            R +A++L+E       +  T+L  +RT DSYL++ +  +A  L FDE  + HAG+VY  A
Sbjct: 1040 REAAEDLRERFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCA 1099

Query: 179  TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPAD-ATYCLEKYF 352
                   VI  GD++QIPF++R  S   R+ KL    V  K +T+RSP D A+Y  +K F
Sbjct: 1100 DDLSARSVICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNF 1159

Query: 353  YKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC 520
            Y        N  ++RS++ V     + S  S+ +     YL   Q+EK  ++ Q   +G 
Sbjct: 1160 YGTSVVTSANP-LVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMR-QYLGRGN 1217

Query: 521  DNIFTTHEAQGKTFDNV 571
             N+ T HE+QGKT+DNV
Sbjct: 1218 WNVNTVHESQGKTYDNV 1234

[37][TOP]
>UniRef100_Q80A46 RNA-dependent RNA polymerase n=1 Tax=Potato mop-top virus
            RepID=Q80A46_9VIRU
          Length = 1303

 Score =  103 bits (258), Expect = 7e-21
 Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 9/197 (4%)
 Frame = +2

Query: 8    RSSADELKETIDC---SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
            R +A++L+E       +  T+L  +RT DSYL++ +  +A  L FDE  + HAG+VY  A
Sbjct: 1040 REAAEDLRERFKSERNATATQLKRVRTVDSYLLNDTQSRANVLHFDEALMAHAGMVYFCA 1099

Query: 179  TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKVERKLITWRSPAD-ATYCLEKYF 352
                   VI  GD++QIPF++R  S   R+ KL    V  K +T+RSP D A+Y  +K F
Sbjct: 1100 DDLSARSVICQGDSQQIPFINRVESITLRYSKLEIDNVVEKRLTYRSPLDVASYLTKKNF 1159

Query: 353  YKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC 520
            Y        N  ++RS++ V     + S  S+ +     YL   Q+EK  ++ Q   +G 
Sbjct: 1160 YGTSVVTSANP-LVRSLKTVGPRDGMTSIYSIPKIPGTQYLTFLQSEKEEMR-QYLGRGN 1217

Query: 521  DNIFTTHEAQGKTFDNV 571
             N+ T HE+QGKT+DNV
Sbjct: 1218 WNVNTVHESQGKTYDNV 1234

[38][TOP]
>UniRef100_Q9JGJ7 145-kDa protein n=2 Tax=Sorghum chlorotic spot virus
            RepID=Q9JGJ7_9VIRU
          Length = 1277

 Score =  100 bits (250), Expect = 6e-20
 Identities = 73/181 (40%), Positives = 95/181 (52%), Gaps = 10/181 (5%)
 Frame = +2

Query: 59   KLHYIRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIP 232
            +L+ +RT DSYLM      +    L FDE  + HAG+VY  A L G  ++I  GD++QIP
Sbjct: 1029 ELNRVRTVDSYLMHDCGKEMTCNTLHFDEALMAHAGMVYFCADLLGARKLICQGDSQQIP 1088

Query: 233  FVSRNPSFVFRHHKLT-GKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIE 406
            FV+R  S   R+  L   K ++   T+RSP D A Y   K +Y   R   TNS   RS+ 
Sbjct: 1089 FVNRVESITLRYANLVIDKTDKIRHTYRSPIDVACYLTMKGYYGADRITTTNSDG-RSLG 1147

Query: 407  VV------PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDN 568
            VV      P+ S   V       YL  TQAEK  L      KG  ++ T HEAQGKTF++
Sbjct: 1148 VVGPRHEKPMTSVYCVPYLAGVQYLTFTQAEKEDLHKALRSKGPVSVSTVHEAQGKTFND 1207

Query: 569  V 571
            V
Sbjct: 1208 V 1208

[39][TOP]
>UniRef100_C8KH75 1a protein n=1 Tax=Melandrium yellow fleck virus RepID=C8KH75_9BROM
          Length = 948

 Score =  100 bits (248), Expect = 1e-19
 Identities = 77/209 (36%), Positives = 110/209 (52%), Gaps = 19/209 (9%)
 Frame = +2

Query: 2    SNRSSADELKETI-DCSPLTKL--HYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +NR SAD+++  I   +P  ++   YIRT DS +M     K +R++ DE  L H G + A
Sbjct: 696  ANRKSADDVRAAIFPENPNNEIATRYIRTADSAIMHGLP-KCKRVLIDEAGLMHYGQLLA 754

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346
             A ++GC EV+ FGDTEQI F SR+ +F  +H+ +     R+L+  T+R P D    ++ 
Sbjct: 755  VAAISGCDEVVAFGDTEQISFKSRDVTFRMKHNAINYD-SRELVKTTYRCPQDVVDAVKL 813

Query: 347  YFYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
               K   R  K N     S V +S+    I+SP  +    N  YL  TQ++KA L  QT 
Sbjct: 814  LKRKCGNRGSKYNDWVSKSTVRKSLYKRSISSPTQINIEVNKFYLTMTQSDKAAL--QTR 871

Query: 509  LKGC--------DNIFTTHEAQGKTFDNV 571
             K          +NI T HEAQG + DNV
Sbjct: 872  AKDFSLSKDWIENNIKTVHEAQGISVDNV 900

[40][TOP]
>UniRef100_C7U0R4 Putative 204K replicase protein n=2 Tax=Beet soil-borne virus
            RepID=C7U0R4_9VIRU
          Length = 1778

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 10/198 (5%)
 Frame = +2

Query: 8    RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
            R +A EL+E   T+  S   +L  +RT DS+LM+    +A+ L FDE  + HAG+VY  A
Sbjct: 1007 REAAAELRERFKTVRGSTDEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066

Query: 179  TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
                   +I  GD++QIPF++R  S    + KL  T  VE++L T+RSP D A +   K 
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125

Query: 350  FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
            FY     +  N    RS+ VV     + S  S+ +   A YL  TQ+EK  +      KG
Sbjct: 1126 FYGTSTVMSANP-TGRSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183

Query: 518  CDNIFTTHEAQGKTFDNV 571
              ++ T HE+QGKT+D+V
Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201

[41][TOP]
>UniRef100_O56790 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=O56790_9VIRU
          Length = 1778

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 75/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
 Frame = +2

Query: 8    RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
            R +A EL+E   T+  S   +L  +RT DS+LM+    +A+ L FDE  + HAG+VY  A
Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKILHFDEALMAHAGMVYFCA 1066

Query: 179  TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
                   +I  GD++QIPF++R  S    + KL  T  VE++L T+RSP D A +   K 
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125

Query: 350  FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
            FY +    +  S   RSI VV     + S  S+ +   A YL  TQ+EK  +      KG
Sbjct: 1126 FYWHFHCYERKSNG-RSISVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183

Query: 518  CDNIFTTHEAQGKTFDNV 571
              ++ T HE+QGKT+D+V
Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201

[42][TOP]
>UniRef100_B6E276 Replicase large subunit n=2 Tax=Hibiscus latent Fort Pierce virus
            RepID=B6E276_9VIRU
          Length = 1646

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
 Frame = +2

Query: 38   IDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGD 217
            IDC+       +RT DS+LM+        L  DE  + H G+V     L+ C++   +GD
Sbjct: 896  IDCTKPANTSNVRTVDSFLMNPKPFTYDTLWIDEGLMLHTGMVNYCVLLSHCTKCFIYGD 955

Query: 218  TEQIPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSR 388
            T+QIPF++R  +F +  H  T      E++ IT R P D T+ L + +   K PV + S 
Sbjct: 956  TQQIPFINRVMNFDYPGHLRTIVVDDTEKRRITSRCPLDVTFYLTQRY---KGPVMSTSS 1012

Query: 389  VLRSIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKT 559
            V RS+E   +  P   E     L    +  TQA+K  LK     KG +++ T HE QG+T
Sbjct: 1013 VTRSVETKFVAGPARFEPRATPLPGKIVTFTQADKETLKK----KGYNDVHTVHEIQGET 1068

Query: 560  FDNV 571
            F+ V
Sbjct: 1069 FNEV 1072

[43][TOP]
>UniRef100_C5IXG8 204 kDa protein n=1 Tax=Beet soil-borne virus RepID=C5IXG8_9VIRU
          Length = 1778

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
 Frame = +2

Query: 8    RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
            R +A EL+E   T+  S   +L  +RT DS+LM+    +A+ L FDE  + HAG+VY  A
Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066

Query: 179  TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
                   +I  GD++QIPF++R  S    + KL  T  VE++L T+RSP D A +   K 
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125

Query: 350  FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
            FY +    +  S   RS+ VV     + S  S+ +   A YL  TQ+EK  +      KG
Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDIVRYLG-KG 1183

Query: 518  CDNIFTTHEAQGKTFDNV 571
              ++ T HE+QGKT+D+V
Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201

[44][TOP]
>UniRef100_B4X9D6 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D6_9VIRU
          Length = 1778

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
 Frame = +2

Query: 8    RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
            R +A EL+E   T+  S   +L  +RT DS+LM+    +A+ L FDE  + HAG+VY  A
Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066

Query: 179  TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
                   +I  GD++QIPF++R  S    + KL  T  VE++L T+RSP D A +   K 
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125

Query: 350  FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
            FY +    +  S   RS+ VV     + S  S+ +   A YL  TQ+EK  +      KG
Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183

Query: 518  CDNIFTTHEAQGKTFDNV 571
              ++ T HE+QGKT+D+V
Sbjct: 1184 QWSVNTVHESQGKTYDDV 1201

[45][TOP]
>UniRef100_O90699 Putative uncharacterized protein n=2 Tax=Beet virus Q
            RepID=O90699_9VIRU
          Length = 1818

 Score = 95.5 bits (236), Expect = 3e-18
 Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 5/172 (2%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS++M+    +A  L FDE  + HAG VY  A +     VI  GD++QIPFV R  
Sbjct: 1071 VRTVDSFIMNDRFSRANVLHFDEALMAHAGTVYFCADMLSARTVICQGDSQQIPFVPRVE 1130

Query: 251  SFVFRHHKL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV----P 415
                ++ KL    V  K +T+RSP D    L +  Y     + + +  LRS++ +     
Sbjct: 1131 GITLKYAKLKIDNVVEKRLTYRSPLDVAAFLTRKGYYGNSVIMSANETLRSMKTIGPRTG 1190

Query: 416  INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            + S  S+ +  N  YL  TQAEK  ++     KG   + T HE QGKT++NV
Sbjct: 1191 MTSIYSIPKVANCQYLTFTQAEKEEMEKYLG-KGKWGVNTVHECQGKTYENV 1241

[46][TOP]
>UniRef100_B4X9D8 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D8_9VIRU
          Length = 1778

 Score = 95.5 bits (236), Expect = 3e-18
 Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
 Frame = +2

Query: 8    RSSADELKE---TIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAA 178
            R +A EL+E   T+  S   +L  +RT DS+LM+    +A+ L FDE  + HAG+VY  A
Sbjct: 1007 REAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKVLHFDEALMAHAGMVYFCA 1066

Query: 179  TLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL--TGKVERKLITWRSPAD-ATYCLEKY 349
                   +I  GD++QIPF++R  S    + KL  T  VE++L T+RSP D A +   K 
Sbjct: 1067 DNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEKRL-TYRSPLDVACFLTRKN 1125

Query: 350  FYKNKRPVKTNSRVLRSIEVV----PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKG 517
            FY +    +  S   RS+ VV     + S  S+ +   A YL  TQ+EK  +      KG
Sbjct: 1126 FYGHFHCYERKSNG-RSMSVVGPRDGMTSNYSIPKKKGAQYLTFTQSEKEDMVRYLG-KG 1183

Query: 518  CDNIFTTHEAQGKTFDNV 571
              ++ T H++QGKT+D+V
Sbjct: 1184 QWSVNTVHKSQGKTYDDV 1201

[47][TOP]
>UniRef100_Q9DUT3 Genomic RNA1 for 1a protein, (ORF1) n=1 Tax=Pelargonium zonate spot
            virus RepID=Q9DUT3_PZSV
          Length = 962

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAAT 181
            + +SS D LK     +P    + +RT DS LM   A K +R++FDE  L H G + A  T
Sbjct: 721  NKKSSEDILKAMFRDTPDIGRNKVRTADSVLMHGVAHKVKRVLFDEVSLVHFGQLCAILT 780

Query: 182  LAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKYFYK 358
            ++G  E+IGFGD+EQI FVSR+  F  ++HKL+    ++++ T+R P D   C++    K
Sbjct: 781  ISGAEELIGFGDSEQISFVSRDRLFDMKYHKLSPDSSDQQIRTFRCPKDVVECVKIMARK 840

Query: 359  -NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH---- 508
               R  K     T S V +S+    ++S        +  YL  TQA+KA L ++      
Sbjct: 841  VGARGSKYNNWFTTSAVRKSLGYHKVSSINESPLRPDVHYLTMTQADKASLLSKARETRF 900

Query: 509  ---LKGCDNIF-TTHEAQG 553
               +   D +  TTHE+QG
Sbjct: 901  RPSVSTIDEVIKTTHESQG 919

[48][TOP]
>UniRef100_Q8JW08 1a protein n=1 Tax=Spring beauty latent virus RepID=Q8JW08_9BROM
          Length = 958

 Score = 92.8 bits (229), Expect = 2e-17
 Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 17/207 (8%)
 Frame = +2

Query: 2    SNRSSADELKETI--DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175
            +NR SA++++E +  D +       +RT DS +M     K  RL+ DE  L H G + A 
Sbjct: 706  ANRKSAEDVREALFGDVNSKIANEVVRTADSAIMHGLP-KCSRLLIDEAGLLHYGQLLAV 764

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLEK 346
            A L GC  V+ FGDTEQI F SR+ +F FRH  +  + +R+ +   T+R P D    ++K
Sbjct: 765  AALCGCETVLAFGDTEQISFKSRDVTFKFRHAVI--EYDRRDVVTETFRCPEDVISAIKK 822

Query: 347  YFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
               K   R  K     T S V  S+ +  ++S   V    +  YL  TQA+KA L ++  
Sbjct: 823  LKRKCGNRDSKYLSWRTQSSVKTSLGMRSVSSVTQVNIEKHKFYLTMTQADKAALVSRAK 882

Query: 509  LKGCD------NIFTTHEAQGKTFDNV 571
                D      +I T HEAQG + D+V
Sbjct: 883  DFPVDKTWVDKHIKTVHEAQGVSVDHV 909

[49][TOP]
>UniRef100_Q9YPH5 209kDa protein n=2 Tax=Broad bean necrosis virus RepID=Q9YPH5_9VIRU
          Length = 1821

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 61/176 (34%), Positives = 95/176 (53%), Gaps = 9/176 (5%)
 Frame = +2

Query: 71   IRTCDSYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DSYL++   + ++A  + FDE  + HAG+VY  A +     +   GD++QIPF++R
Sbjct: 1063 VRTVDSYLLNDFGNKLRADTVHFDEALMAHAGMVYFIAMMCSAKRIKCQGDSKQIPFINR 1122

Query: 245  NPSFVFRHHKL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV--- 412
              S    + KL   +   K +T+RSP D  Y L K  +     + + + +LRS++ V   
Sbjct: 1123 VESIKLEYAKLDIHETIAKRLTYRSPLDVAYYLTKKGFYGLDFITSANPLLRSMKTVGPR 1182

Query: 413  ---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
               P++S   + +   A YL  TQ EK  +K Q    G   + T HEAQGKTF++V
Sbjct: 1183 SSTPMSSIYVIPKTKGASYLTFTQTEKDEMK-QYLGSGDWTVNTVHEAQGKTFNDV 1237

[50][TOP]
>UniRef100_C6F418 ORF1a n=1 Tax=Citrus tristeza virus RepID=C6F418_9CLOS
          Length = 3115

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     +E +D   LTK H I+T       DSYLM+   +K   L  DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLTK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 2791

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2792 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943

[51][TOP]
>UniRef100_Q8JVK7 Replicase large subunit n=2 Tax=Paprika mild mottle virus
            RepID=Q8JVK7_PMMV
          Length = 1616

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 58/176 (32%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKA---QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
            ++T DS+LM+         +RL  DE  + H G VY   TL+ C E   FGDT+QIP+++
Sbjct: 881  VKTVDSFLMNLGKGPRNHFKRLFIDEGLMLHPGCVYFLVTLSLCDEAFVFGDTQQIPYIN 940

Query: 242  RNPSFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
            R  +F F  H    +  + E++  T R P D T+ L + +   +  V T S   RS+ V 
Sbjct: 941  RVQNFPFPKHFSKLIVDETEKRRTTLRCPVDVTHFLNQRY---EGAVTTTSTTTRSVGVD 997

Query: 413  PINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
             +N   ++   T  L    +  TQ++K  L +    +G +N+ T HE QG+T+D+V
Sbjct: 998  VVNGAATMNPVTRPLKGKIITFTQSDKITLAS----RGYENVNTVHEIQGETYDDV 1049

[52][TOP]
>UniRef100_Q05983 Non-structural polyprotein protein n=1 Tax=Raspberry bushy dwarf
            virus RepID=Q05983_RBDV
          Length = 1694

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 11/181 (6%)
 Frame = +2

Query: 68   YIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +IRT DSYL+S S       L  DE  L H G++  A  ++G  +V  FGD+EQIPF +R
Sbjct: 901  FIRTVDSYLLSPSVTGSCDELFIDEYGLSHPGILLLAIHISGIRKVTLFGDSEQIPFCNR 960

Query: 245  NPSFVFRHHK-----LTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEV 409
               F  +++      L    E +  T+R P D T  L+K  YK K P+KT S V  SI +
Sbjct: 961  LADFPLKYNSVEDVGLNFDREIRSTTYRCPQDITLSLQK-MYKTK-PIKTVSTVESSITI 1018

Query: 410  VPINS----PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVY 574
             PI S    P+    +   LY+C T+ ++++LK +   +   + + T H AQG ++ NV 
Sbjct: 1019 KPIKSEFEIPLPNAFDGPVLYICMTKHDESLLKLRWAKENISSEVRTVHAAQGLSYKNVV 1078

Query: 575  F 577
            +
Sbjct: 1079 Y 1079

[53][TOP]
>UniRef100_Q9IFX0 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9IFX0_9CLOS
          Length = 3115

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943

[54][TOP]
>UniRef100_Q9DTG5 349-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=Q9DTG5_9CLOS
          Length = 3132

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 67/214 (31%), Positives = 102/214 (47%), Gaps = 24/214 (11%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     KE +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 2750 ANKNSQAEISQRISKELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2808

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWR 313
             HAG + A      C  V+ FGD+ QI ++ RN   V   H +   +E +      +++R
Sbjct: 2809 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRVYGEVSYR 2868

Query: 314  SPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVL 493
             P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQAEK  L
Sbjct: 2869 CPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL 2928

Query: 494  KAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
              Q HL        K    + T HE QG+T+  V
Sbjct: 2929 --QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2960

[55][TOP]
>UniRef100_Q9DJR0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR0_9CLOS
          Length = 371

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233

[56][TOP]
>UniRef100_Q9DJQ6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJQ6_9CLOS
          Length = 357

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 18  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 76

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 77  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 133

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 134 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 191

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 192 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 228

[57][TOP]
>UniRef100_Q9DJQ2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJQ2_9CLOS
          Length = 257

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 18  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 76

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 77  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 133

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 134 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 191

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 192 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 228

[58][TOP]
>UniRef100_Q9DJP5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJP5_9CLOS
          Length = 319

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 20  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 78

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 79  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 135

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 136 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 193

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 194 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 230

[59][TOP]
>UniRef100_Q9DJP3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJP3_9CLOS
          Length = 368

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 22  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 80

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 81  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 137

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 195

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 232

[60][TOP]
>UniRef100_Q9DJN7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJN7_9CLOS
          Length = 371

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLDVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233

[61][TOP]
>UniRef100_Q9DJN1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
           RepID=Q9DJN1_9CLOS
          Length = 371

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233

[62][TOP]
>UniRef100_Q9DJM1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM1_9CLOS
          Length = 371

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSAGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[63][TOP]
>UniRef100_Q9DJL6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJL6_9CLOS
          Length = 371

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPRDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[64][TOP]
>UniRef100_B5THB7 p1a n=1 Tax=Citrus tristeza virus RepID=B5THB7_9CLOS
          Length = 3115

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943

[65][TOP]
>UniRef100_Q9DJQ5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJQ5_9CLOS
          Length = 368

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[66][TOP]
>UniRef100_Q9DJM8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM8_9CLOS
          Length = 371

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKVLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T+S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233

[67][TOP]
>UniRef100_Q9DJM7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM7_9CLOS
          Length = 371

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T+S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233

[68][TOP]
>UniRef100_Q9DJM6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM6_9CLOS
          Length = 262

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 67/219 (30%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T+S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233

[69][TOP]
>UniRef100_Q9DJN8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJN8_9CLOS
          Length = 367

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[70][TOP]
>UniRef100_Q9DJN6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJN6_9CLOS
          Length = 371

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[71][TOP]
>UniRef100_Q9DJN4 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
           RepID=Q9DJN4_9CLOS
          Length = 370

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 22  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 80

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 81  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 137

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 195

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 232

[72][TOP]
>UniRef100_Q9DJN3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJN3_9CLOS
          Length = 371

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[73][TOP]
>UniRef100_Q9DJM9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM9_9CLOS
          Length = 371

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[74][TOP]
>UniRef100_Q9DJM3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM3_9CLOS
          Length = 371

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[75][TOP]
>UniRef100_Q9DJM0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM0_9CLOS
          Length = 371

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[76][TOP]
>UniRef100_Q2LK62 P349 protein n=1 Tax=Citrus tristeza virus RepID=Q2LK62_9CLOS
          Length = 3115

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     +E +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943

[77][TOP]
>UniRef100_O10467 347-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=O10467_9CLOS
          Length = 3115

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     +E +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943

[78][TOP]
>UniRef100_B5THA5 p1a n=1 Tax=Citrus tristeza virus RepID=B5THA5_9CLOS
          Length = 3115

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 67/219 (30%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     +E +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 2733 ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 2791

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 2848

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 2906

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943

[79][TOP]
>UniRef100_Q9DJN0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJN0_9CLOS
          Length = 371

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H ++T       DSYLM+   +KA  L  DECF+
Sbjct: 23  ANKNSQAEISRRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKADLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDMDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y  +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYNVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233

[80][TOP]
>UniRef100_Q9DJP7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJP7_9CLOS
          Length = 343

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 24/205 (11%)
 Frame = +2

Query: 29  KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAG 190
           +E +D   L K H ++T       DSYLM+   +K   L  DECF+ HAG + A      
Sbjct: 9   RELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTS 67

Query: 191 CSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCL 340
           C  V+ FGD+ QI ++ RN           +F+   H++ G+V     ++R P D    L
Sbjct: 68  CKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWL 122

Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--- 511
            K++ ++     T S    S+ +  IN    V  +++A Y+ +TQAEK  L  Q HL   
Sbjct: 123 SKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRL 180

Query: 512 -----KGCDNIFTTHEAQGKTFDNV 571
                K    + T HE QG+T+  V
Sbjct: 181 TVGRTKAVPIVNTVHEVQGETYKKV 205

[81][TOP]
>UniRef100_Q9DJR6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR6_9CLOS
          Length = 371

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H ++T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG T+  V
Sbjct: 197 EKNDL--QKHLGRLTVGRTKAVPIVNTVHEVQGDTYKKV 233

[82][TOP]
>UniRef100_Q9DJM5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM5_9CLOS
          Length = 371

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77  TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
           T DSYLM+   +K   L  DECF+ HAG + A      C  V+ FGD+ QI ++ RN   
Sbjct: 58  TVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFG 117

Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                   +F+   H++ G+V     ++R P D    L K++ ++     T S    S+ 
Sbjct: 118 VSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVS 172

Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
           +  IN    V  +++A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 173 IEIINGCDDVPYDSSAKYIAYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETY 230

Query: 563 DNV 571
             V
Sbjct: 231 KKV 233

[83][TOP]
>UniRef100_Q5G7G7 Polyprotein 1a n=2 Tax=Mint virus 1 RepID=Q5G7G7_9CLOS
          Length = 2511

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            + T DSYLM+        L  DECF+ HAG V        C   I FGD++QI ++ R+ 
Sbjct: 2192 VMTMDSYLMNRCGETCDLLFMDECFMVHAGQVLGIINKTMCKVAILFGDSKQIHYIERDE 2251

Query: 251  SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
                 +H +   +E        I++R P D    L K + +  +   T+S   +S+ VV 
Sbjct: 2252 FVSTVYHDIDSFIEPFCRMYGEISYRCPWDVCEWLSKLYKRQIKSNNTSSIGKQSVSVVN 2311

Query: 416  INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNVY 574
            I S   V    +  YL +TQ+EKA L+ +      + ++ T HEAQG+TF NVY
Sbjct: 2312 IESVEDVPFVQSIKYLTYTQSEKAELRRKFEKFSSEPSVNTVHEAQGETFKNVY 2365

[84][TOP]
>UniRef100_P27752 Methyltransferase n=1 Tax=Cowpea chlorotic mottle virus
            RepID=ORF1A_CCMV
          Length = 958

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 70/206 (33%), Positives = 106/206 (51%), Gaps = 17/206 (8%)
 Frame = +2

Query: 2    SNRSSADELKETI-DCSPLTKLHY--IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +N+ SA++++E +   +P +++ +  IRT DS LM     + +RL+ DE  L H G + A
Sbjct: 706  ANKKSAEDVREALFPHNPSSEIAFKVIRTADSALMHGLP-RCKRLLVDEAGLLHYGQLLA 764

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346
             A L  C  V+ FGDTEQI F SR+ +F  ++  L     R ++  TWR P D    ++ 
Sbjct: 765  VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823

Query: 347  YFYKNKRPV-----KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT-H 508
                  R       K++S+V RSI    I SP+ V  +    YL  TQA+KA L ++   
Sbjct: 824  LKRGGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAKD 883

Query: 509  LKGCD------NIFTTHEAQGKTFDN 568
                D      +I T HEAQG + D+
Sbjct: 884  FPELDKAWIEKHIKTVHEAQGVSVDH 909

[85][TOP]
>UniRef100_Q9WJD8 (PEBV) genomic RNA1 for 141K, 201K, 30K and 12K proteins n=2 Tax=Pea
            early-browning virus RepID=Q9WJD8_PEBV
          Length = 1766

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 67/175 (38%), Positives = 88/175 (50%), Gaps = 8/175 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKA--QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            ++T DS+LM  S        L FDE  + HAG+V+  A +A   +VI  GD +QI +  R
Sbjct: 1012 VKTVDSFLMHCSDGNCVGDLLHFDEALMAHAGMVFFCAQIAKAKKVICQGDQKQIAYKPR 1071

Query: 245  NPSFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
                  R   L G+   VE K +++R P D    L++ FY  K  V T + VLRS++V  
Sbjct: 1072 VSQLTLRFTSLIGRFDEVEEKRMSYRCPVDVALTLDR-FYTGK--VVTKNSVLRSMDVKR 1128

Query: 416  INSPVSVERNTNALYLCHTQAEK---AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            I S   VE      YL   Q+EK   A L  Q  +K   N  T HEAQGKTF  V
Sbjct: 1129 IGSKEQVEMEHGIQYLTFLQSEKKDIANLLCQRKVKSFVN--TVHEAQGKTFKKV 1181

[86][TOP]
>UniRef100_Q9DJS0 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
           RepID=Q9DJS0_9CLOS
          Length = 371

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++       S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANIGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233

[87][TOP]
>UniRef100_Q9DJR1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR1_9CLOS
          Length = 371

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 24/214 (11%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWR 313
            HAG + A      C  V+ FGD+ QI ++ RN   V   H +    E +      +++R
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDALYEPQHRIYGEVSYR 141

Query: 314 SPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVL 493
            P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQAEK  L
Sbjct: 142 CPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQAEKNEL 201

Query: 494 KAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
             Q HL        K    + T HE QG+T+  V
Sbjct: 202 --QKHLGRLTVGRTKPVPVVNTVHEVQGETYKKV 233

[88][TOP]
>UniRef100_Q9DJM4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM4_9CLOS
          Length = 371

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77  TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
           T DSYLM+   +K   L  DECF+ HAG + A      C  V+ FGD+ QI ++ RN   
Sbjct: 58  TVDSYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFG 117

Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                   +F+   H++ G+V     ++R P D    L K++ ++     T S    S+ 
Sbjct: 118 VSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVS 172

Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
           +  IN    V  +++A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 173 IEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETY 230

Query: 563 DNV 571
             V
Sbjct: 231 KKV 233

[89][TOP]
>UniRef100_Q9DJM2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJM2_9CLOS
          Length = 370

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 22  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 80

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 81  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 137

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T      S+ +  IN    V  +++A Y+ +TQA
Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANTGGVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 195

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 196 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 232

[90][TOP]
>UniRef100_Q8BEM6 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM6_CCMV
          Length = 959

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
 Frame = +2

Query: 2    SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +N+ SA++++E +   + S    L  IRT DS LM     + +RL+ DE  L H G + A
Sbjct: 706  ANKKSAEDVREALFPENPSSEIALKVIRTADSALMHGLP-QCKRLLVDEAGLLHYGQLLA 764

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346
             A L  C  V+ FGDTEQI F SR+ +F  ++  L     R ++  TWR P D    ++ 
Sbjct: 765  VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823

Query: 347  YFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT- 505
               K           K++S+V RSI    I SP+ V  +    YL  TQA+KA L ++  
Sbjct: 824  LKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAK 883

Query: 506  HLKGCD------NIFTTHEAQGKTFDN 568
                 D      +I T HEAQG + D+
Sbjct: 884  DFPELDKAWIEKHIKTVHEAQGVSVDH 910

[91][TOP]
>UniRef100_Q8BEM3 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM3_CCMV
          Length = 959

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 71/207 (34%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
 Frame = +2

Query: 2    SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +N+ SA++++E +   + S    L  IRT DS LM     + +RL+ DE  L H G + A
Sbjct: 706  ANKKSAEDVREALFPDNPSSEIALKVIRTADSALMHGLP-QCKRLLVDEAGLLHYGQLLA 764

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI--TWRSPADATYCLEK 346
             A L  C  V+ FGDTEQI F SR+ +F  ++  L     R ++  TWR P D    ++ 
Sbjct: 765  VAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-SRDIVTETWRCPQDVISAVQT 823

Query: 347  YFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT- 505
               K           K++S+V RSI    I SP+ V  +    YL  TQA+KA L ++  
Sbjct: 824  LKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSREKFYLTMTQADKAALVSRAK 883

Query: 506  HLKGCD------NIFTTHEAQGKTFDN 568
                 D      +I T HEAQG + D+
Sbjct: 884  DFPELDKAWIEKHIKTVHEAQGVSVDH 910

[92][TOP]
>UniRef100_Q9DJQ8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJQ8_9CLOS
          Length = 371

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L   ECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVGECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233

[93][TOP]
>UniRef100_Q9DJP8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJP8_9CLOS
          Length = 369

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 21  ANKNSQAEISQRISRELMDRKMLAK-HVIKTAGRVFTVDSYLMNHIRLKTDLLFVDECFM 79

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 80  VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 136

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +   N    V  +++A Y+ +TQA
Sbjct: 137 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVTNGCDDVPYDSSAKYIVYTQA 194

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG T+  V
Sbjct: 195 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGDTYKKV 231

[94][TOP]
>UniRef100_Q9WID7 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9WID7_9CLOS
          Length = 3115

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     +E +D   L K H ++T       DSYLM+   +    L  DECF+
Sbjct: 2733 ANKNSQAEISQRISREFMDRKMLAK-HVVKTAGRVFTVDSYLMNHLRLTTDLLFVDECFM 2791

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2792 VHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSLLHDIDAFIEPQHRIYGEV--- 2848

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 2849 --SYRCPWDICEWLSKFYPRHVATTNTGSVGKSSVSIEVINGCDDVPYDSSAKYIVYTQA 2906

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2907 EKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943

[95][TOP]
>UniRef100_Q9DJL9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJL9_9CLOS
          Length = 371

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     +E +D   L K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRISRELMDRKMLAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++     T S    S+ +  IN    V  +++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEIINGCDDVPYDSSAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE Q +T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQEETYKKV 233

[96][TOP]
>UniRef100_Q65661 1a protein n=1 Tax=Brome mosaic virus RepID=Q65661_BMV
          Length = 961

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 73/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
 Frame = +2

Query: 2    SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +NR SA++++  +     +    L  +RT DS +M        RL+ DE  L H G +  
Sbjct: 709  ANRKSAEDVRMALFPDTFNSKVALDIVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343
             A L+ CS+V+ FGDTEQI F SR+  F   H  L  K +R+ +   T+R P D    + 
Sbjct: 768  VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRDVVHKTYRCPQDVIAAVN 825

Query: 344  KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505
                K   R  K     + S+V RS+    I S + V  + N  YL  TQA+KA L  QT
Sbjct: 826  LLKRKCGNRDTKYQSWTSESKVSRSLAKRRITSVLQVTIDPNRTYLTMTQADKAAL--QT 883

Query: 506  HLKGC--------DNIFTTHEAQGKTFDNV 571
              K           +I T HEAQG + DNV
Sbjct: 884  RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913

[97][TOP]
>UniRef100_A0SL67 1a n=1 Tax=Brome mosaic virus RepID=A0SL67_BMV
          Length = 961

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 73/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
 Frame = +2

Query: 2    SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +NR SA++++  +     +    L  +RT DS +M        RL+ DE  L H G +  
Sbjct: 709  ANRKSAEDVRMALFPDTFNSKVALDVVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343
             A L+ CS+V+ FGDTEQI F SR+  F   H  L  K +R+ +   T+R P D    + 
Sbjct: 768  VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRDVVHKTYRCPQDVIAAVN 825

Query: 344  KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505
                K   R  K     + S+V RS+    I S + V  + N  YL  TQA+KA L  QT
Sbjct: 826  LLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSVLQVTIDPNRTYLTMTQADKAAL--QT 883

Query: 506  HLKGC--------DNIFTTHEAQGKTFDNV 571
              K           +I T HEAQG + DNV
Sbjct: 884  RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913

[98][TOP]
>UniRef100_Q9WJQ9 Putative uncharacterized protein (Fragment) n=1 Tax=Tobacco rattle
           virus RepID=Q9WJQ9_9VIRU
          Length = 400

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
 Frame = +2

Query: 2   SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
           + R++ D+L E       P      ++T DS+LM     ++    L FDE  + HAG+VY
Sbjct: 141 TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 200

Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
             A +AG    I  GD  QI F  R      R   L GK   V  K  T+RSPAD    L
Sbjct: 201 FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 260

Query: 341 EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
            KY+  +   V+T++    S+ V  I S   V     A Y+   Q+EK  L     L K 
Sbjct: 261 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 317

Query: 518 CDNIFTTHEAQGKTFDNV 571
              + T HE+QG+TF +V
Sbjct: 318 AAKVSTVHESQGETFKDV 335

[99][TOP]
>UniRef100_Q9J942 194 kDa protein n=2 Tax=Tobacco rattle virus RepID=Q9J942_9VIRU
          Length = 1707

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
 Frame = +2

Query: 2    SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
            + R++ D+L E       P      ++T DS+LM     ++    L FDE  + HAG+VY
Sbjct: 928  TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
              A +AG    I  GD  QI F  R      R   L GK   V  K  T+RSPAD    L
Sbjct: 988  FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047

Query: 341  EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
             KY+  +   V+T++    S+ V  I S   V     A Y+   Q+EK  L     L K 
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104

Query: 518  CDNIFTTHEAQGKTFDNV 571
               + T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122

[100][TOP]
>UniRef100_Q9DL34 RNA-dependent RNA polymerase n=2 Tax=Tobacco rattle virus
            RepID=Q9DL34_9VIRU
          Length = 1707

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
 Frame = +2

Query: 2    SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
            + R++ D+L E       P      ++T DS+LM     ++    L FDE  + HAG+VY
Sbjct: 928  TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
              A +AG    I  GD  QI F  R      R   L GK   V  K  T+RSPAD    L
Sbjct: 988  FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047

Query: 341  EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
             KY+  +   V+T++    S+ V  I S   V     A Y+   Q+EK  L     L K 
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104

Query: 518  CDNIFTTHEAQGKTFDNV 571
               + T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122

[101][TOP]
>UniRef100_Q8JU32 Putative replicase n=2 Tax=Tobacco rattle virus RepID=Q8JU32_9VIRU
          Length = 1707

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
 Frame = +2

Query: 2    SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
            + R++ D+L E       P      ++T DS+LM     ++    L FDE  + HAG+VY
Sbjct: 928  TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
              A +AG    I  GD  QI F  R      R   L GK   V  K  T+RSPAD    L
Sbjct: 988  FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047

Query: 341  EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
             KY+  +   V+T++    S+ V  I S   V     A Y+   Q+EK  L     L K 
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104

Query: 518  CDNIFTTHEAQGKTFDNV 571
               + T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122

[102][TOP]
>UniRef100_O56250 RNA polymerase n=1 Tax=Tobacco rattle virus RepID=O56250_9VIRU
          Length = 1707

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
 Frame = +2

Query: 2    SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
            + R++ D+L E       P      ++T DS+LM     ++    L FDE  + HAG+VY
Sbjct: 928  TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
              A +AG    I  GD  QI F  R      R   L GK   V  K  T+RSPAD    L
Sbjct: 988  FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVVAVL 1047

Query: 341  EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
             KY+  +   V+T++    S+ V  I S   V     A Y+   Q+EK  L     L K 
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104

Query: 518  CDNIFTTHEAQGKTFDNV 571
               + T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122

[103][TOP]
>UniRef100_P05080 134 kDa protein n=2 Tax=Tobacco rattle virus RepID=194K_TRVSY
          Length = 1707

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
 Frame = +2

Query: 2    SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
            + R++ D+L E       P      ++T DS+LM     ++    L FDE  + HAG+VY
Sbjct: 928  TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
              A +AG    I  GD  QI F  R      R   L GK   V  K  T+RSPAD    L
Sbjct: 988  FCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047

Query: 341  EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
             KY+  +   V+T++    S+ V  I S   V     A Y+   Q+EK  L     L K 
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKV 1104

Query: 518  CDNIFTTHEAQGKTFDNV 571
               + T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122

[104][TOP]
>UniRef100_Q70BW7 Replicase n=2 Tax=Tobacco rattle virus RepID=Q70BW7_9VIRU
          Length = 1707

 Score = 85.1 bits (209), Expect = 4e-15
 Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
 Frame = +2

Query: 2    SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
            + R++ D+L E       P      ++T DS+LM     ++    L FDE  + HAG+VY
Sbjct: 928  TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
              A +AG    I  GD  QI F  R      R   L GK   V  K  T+RSPAD    L
Sbjct: 988  FCAQIAGAKRCICQGDQNQISFKPRVSQVNLRFSSLVGKFDIVTEKRETYRSPADVAAVL 1047

Query: 341  EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
             KY+  +   V+T++    S+ V  I S   V     A Y+   Q+EK  L     L K 
Sbjct: 1048 NKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELINLLALRKV 1104

Query: 518  CDNIFTTHEAQGKTFDNV 571
               + T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122

[105][TOP]
>UniRef100_Q9DJQ1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
           RepID=Q9DJQ1_9CLOS
          Length = 370

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     KE +D   + K H I+T       DSYLM+   +K + L  DECF+
Sbjct: 22  ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 80

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 81  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 137

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++       S    S+ +  IN    V   ++A Y+ +TQA
Sbjct: 138 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 195

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 196 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 232

[106][TOP]
>UniRef100_Q1XF44 Replicase large subunit n=2 Tax=Streptocarpus flower break virus
            RepID=Q1XF44_9VIRU
          Length = 1606

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+L+     + +RL  DE  + H G V   A  + C EV+ +GDT QIPF++R  
Sbjct: 869  VRTVDSFLIHMKGTQVKRLFIDEGLMLHTGCVNFLALFSHCEEVLVYGDTHQIPFINRVA 928

Query: 251  SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H        VE++ +T R PAD T+ L    Y  K  V   S +LRS+E   + 
Sbjct: 929  NFPYPSHFAQLQYDSVEKRRVTLRCPADVTHHLNSQ-YDGK--VMCTSSILRSVECEVVR 985

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDNV 571
                +   T  L    +  TQ++K  L+ + + +    ++ T HE QG+T+++V
Sbjct: 986  GKAVLNPKTKPLSGKIITFTQSDKLELQNKGYGEVDVLDVNTVHEIQGETYEHV 1039

[107][TOP]
>UniRef100_B8YDL1 p349 protein n=1 Tax=Citrus tristeza virus RepID=B8YDL1_9CLOS
          Length = 3113

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     KE +D   + K H I+T       DSYLM+   +K + L  DECF+
Sbjct: 2731 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 2789

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 2846

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++       S    S+ +  IN    V   ++A Y+ +TQA
Sbjct: 2847 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 2904

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2905 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 2941

[108][TOP]
>UniRef100_B8PRP6 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=B8PRP6_9CLOS
          Length = 3113

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     KE +D   + K H I+T       DSYLM+   +K + L  DECF+
Sbjct: 2731 ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 2789

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 2846

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K++ ++       S    S+ +  IN    V   ++A Y+ +TQA
Sbjct: 2847 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 2904

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2905 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 2941

[109][TOP]
>UniRef100_A3QVG6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
            RepID=A3QVG6_TMGMV
          Length = 1609

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 6/173 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM       +RL  DE  + H G V     ++GC+    +GDT+QIPF++R  
Sbjct: 880  VRTVDSFLMHPKPRTHKRLFIDEGLMLHTGCVNFLVLISGCNIAYIYGDTQQIPFINRVQ 939

Query: 251  SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H  KL   +VE +  T R P D  + L+    K +  V T S V RS+    I 
Sbjct: 940  NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIG 996

Query: 422  SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                  SV +      +  TQA+K  L+     KG  N+ T HE QG+TF++V
Sbjct: 997  GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045

[110][TOP]
>UniRef100_Q00020 Methyltransferase n=1 Tax=Broad bean mottle virus RepID=ORF1A_BBMV
          Length = 966

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 72/206 (34%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
 Frame = +2

Query: 2    SNRSSADELKETI--DCSPL-TKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +NR SA+++++ I  D S     L  +RT DS +M     +  RL+ DE  L H G + A
Sbjct: 714  ANRKSAEDVRKAIFGDASDSEVALKVVRTADSAIMHGLP-ECHRLLVDEAGLLHYGQLLA 772

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349
             A L  CSEV+ FGDTEQI F SR+ +F  ++  +   K +    T+R P D    ++  
Sbjct: 773  VADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKRDIVSKTFRCPQDVVSAVKIL 832

Query: 350  FYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL 511
              K   R  K N     S+V +S+    I S   V    +  YL  T+A+KA L ++   
Sbjct: 833  KRKCANRSSKYNGWVSSSKVEKSLSKSRIVSINQVSMEKHKFYLTMTEADKAALCSRAKD 892

Query: 512  KGCD------NIFTTHEAQGKTFDNV 571
             G D      N+ T HEAQGK  D+V
Sbjct: 893  VGLDKTWVESNMETVHEAQGKAVDHV 918

[111][TOP]
>UniRef100_Q8V703 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
            RepID=Q8V703_TMGMV
          Length = 1609

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 60/173 (34%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM       +RL  DE  + H G V     ++GC     +GDT+QIPF++R  
Sbjct: 880  VRTVDSFLMHPKPRTHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939

Query: 251  SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H  KL   +VE +  T R P D  + L+    K +  V T S V RS+    I 
Sbjct: 940  NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIG 996

Query: 422  SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                  SV +      +  TQA+K  L+     KG  N+ T HE QG+TF++V
Sbjct: 997  GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045

[112][TOP]
>UniRef100_Q50L56 1a protein n=1 Tax=Cassia yellow blotch virus RepID=Q50L56_9BROM
          Length = 955

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 68/209 (32%), Positives = 101/209 (48%), Gaps = 19/209 (9%)
 Frame = +2

Query: 2    SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +N+ SA +++E I   D        +IRT DS LM       QRL+ DE  L H G V A
Sbjct: 701  ANKKSASDVREAIFPEDPEGEIASKFIRTADSALMHGLP-SCQRLLIDEAGLLHFGQVLA 759

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVERKLITWRSPADATYCLEKY 349
             A +   +EV+ FGD+EQI F SR+ +F FRH K+   + +   +T+R P D    + K 
Sbjct: 760  VAAICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDVVTVTYRCPQDVVAAVVKM 819

Query: 350  FYKNKRPVK-------TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
              +  +  +       + S+V +S+   PI+S   +    +  Y   TQ+ KA L   T 
Sbjct: 820  KRRTGKLRESKYSSWISRSKVEKSLSARPISSLNQIVIEPHKFYQTMTQSAKAAL--MTR 877

Query: 509  LKGCD--------NIFTTHEAQGKTFDNV 571
             K           NI T HE+QG + D+V
Sbjct: 878  AKDFQLPKSWIEANIKTAHESQGISVDHV 906

[113][TOP]
>UniRef100_P03588 Methyltransferase n=1 Tax=Brome mosaic virus RepID=ORF1A_BMV
          Length = 961

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 72/210 (34%), Positives = 101/210 (48%), Gaps = 20/210 (9%)
 Frame = +2

Query: 2    SNRSSADELKETI---DCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYA 172
            +NR SA++++  +     +    L  +RT DS +M        RL+ DE  L H G +  
Sbjct: 709  ANRKSAEDVRMALFPDTYNSKVALDVVRTADSAIMHG-VPSCHRLLVDEAGLLHYGQLLV 767

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI---TWRSPADATYCLE 343
             A L+ CS+V+ FGDTEQI F SR+  F   H  L  + +R+ +   T+R P D    + 
Sbjct: 768  VAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--QYDRRDVVHKTYRCPQDVIAAVN 825

Query: 344  KYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT 505
                K   R  K     + S+V RS+    I S + V  + N  YL  TQA+KA L  QT
Sbjct: 826  LLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQVTIDPNRTYLTMTQADKAAL--QT 883

Query: 506  HLKGC--------DNIFTTHEAQGKTFDNV 571
              K           +I T HEAQG + DNV
Sbjct: 884  RAKDFPVSKDWIDGHIKTVHEAQGISVDNV 913

[114][TOP]
>UniRef100_Q9DJT4 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
           virus RepID=Q9DJT4_9CLOS
          Length = 371

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD+EQI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSEQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[115][TOP]
>UniRef100_Q9DJS5 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
           RepID=Q9DJS5_9CLOS
          Length = 371

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     KE +D   + K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           SF+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K + ++       S    S+ +  IN    V    +A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 233

[116][TOP]
>UniRef100_Q9DJL4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJL4_9CLOS
          Length = 371

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     KE +D   + K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 23  ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           SF+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K + ++       S    S+ +  IN    V    +A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 233

[117][TOP]
>UniRef100_D0EAN1 348 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAN1_9CLOS
          Length = 3113

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2    SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
            +N++S  E+     KE +D   + K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 2731 ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 2789

Query: 149  QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
             HAG + A      C  V+ FGD+ QI ++ RN           SF+   H++ G+V   
Sbjct: 2790 VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 2846

Query: 299  LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
              ++R P D    L K + ++       S    S+ +  IN    V    +A Y+ +TQA
Sbjct: 2847 --SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 2904

Query: 479  EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2905 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 2941

[118][TOP]
>UniRef100_Q9DJS1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJS1_9CLOS
          Length = 371

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     KE +D   + K H I+T       DSYLM+   +K + L  DECF+
Sbjct: 23  ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++  +       S    S+ +  IN    V   ++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPXHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 233

[119][TOP]
>UniRef100_Q9DJR8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR8_9CLOS
          Length = 371

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     KE +D   + K H I+T       DSYLM+   +K + L  DECF+
Sbjct: 23  ANKNSQAEISQRISKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIHLKTELLFVDECFM 81

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           +F+   H++ G+V   
Sbjct: 82  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIQPEHRVYGEV--- 138

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    L K++ ++       S    S+ +  IN    V   ++A Y+ +TQA
Sbjct: 139 --SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEIINGYDDVPYESDAKYVVYTQA 196

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK   + Q HL        K    + T HE QG+T+  V
Sbjct: 197 EKN--EFQKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 233

[120][TOP]
>UniRef100_Q84918 195K protein n=2 Tax=Pepper ringspot virus RepID=Q84918_9VIRU
          Length = 1698

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 61/173 (35%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKA--QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT D++LM  S  +   + L FDE  + HAG+V+  A LA    V+  GD +QI +  R
Sbjct: 945  VRTVDAFLMHCSNGECIGETLHFDEALMAHAGMVFFCAQLAKAKLVVCQGDQKQIAYKPR 1004

Query: 245  NPSFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
                  +   L G+   VE K +T+R P D    L++ FY  K  V T + VLRS+    
Sbjct: 1005 VAQVNLKFLSLVGRFDEVEEKRLTYRCPIDVALSLDR-FYTGK--VVTKNNVLRSMTTKR 1061

Query: 416  INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNV 571
            I+S   V       YL   Q+EK  +     L+  +  + T HEAQGKTF  V
Sbjct: 1062 ISSKEQVTMEKGVQYLTFLQSEKKEIATMLALRKIEAAVNTVHEAQGKTFKKV 1114

[121][TOP]
>UniRef100_Q9DJS4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJS4_9CLOS
          Length = 366

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 67/219 (30%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
 Frame = +2

Query: 2   SNRSSADEL-----KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFL 148
           +N++S  E+     KE +D   + K H I+T       DSYLM+   +K   L  DECF+
Sbjct: 20  ANKNSQAEISQRITKELMDRKMVAK-HVIKTASRVFTVDSYLMNHIRLKTDLLFVDECFM 78

Query: 149 QHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERK 298
            HAG + A      C  V+ FGD+ QI ++ RN           SF+   H++ G+V   
Sbjct: 79  VHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSLLHDIDSFIQPEHRVYGEV--- 135

Query: 299 LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQA 478
             ++R P D    + K + ++       S    S+ +  IN    V    +A Y+ +TQA
Sbjct: 136 --SYRCPWDICEWMSKSYPRHVATANIASVGKSSVSIEIINGYEDVPYEGDAKYIVYTQA 193

Query: 479 EKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           EK  L  Q HL        K    + T HE QG+T+  V
Sbjct: 194 EKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 230

[122][TOP]
>UniRef100_Q9DJU2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJU2_9CLOS
          Length = 371

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[123][TOP]
>UniRef100_Q9DJT5 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
           virus RepID=Q9DJT5_9CLOS
          Length = 371

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ V  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSVEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[124][TOP]
>UniRef100_Q9DJR4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR4_9CLOS
          Length = 371

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[125][TOP]
>UniRef100_Q9DJR3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR3_9CLOS
          Length = 371

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICKWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[126][TOP]
>UniRef100_Q5K6D3 Replicase large subunit n=2 Tax=Hibiscus latent Singapore virus
            RepID=Q5K6D3_9VIRU
          Length = 1638

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM+    + + L  DE  + H G +     L+ C +   FGDT+QIPF++R  
Sbjct: 902  VRTVDSFLMNPKPFEYKVLWIDEGLMLHTGAISFCVALSHCEQCYVFGDTQQIPFINRVM 961

Query: 251  SFVF---RHHKLTGKVERKLITWRSPADAT-YCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418
            +F +       +T  VE++ IT R P D T Y  ++Y    K PV + + V RS++   +
Sbjct: 962  NFDYPKTLQTLVTDSVEKRRITSRCPLDVTCYLAQRY----KGPVVSTNNVERSLDTKLV 1017

Query: 419  NSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                  E     L    +  TQA+K  LK     +G  ++ T HE QG+T+  V
Sbjct: 1018 AGAARFEPQLTPLPGKVITFTQADKETLKK----RGYQDVHTVHEVQGETYTEV 1067

[127][TOP]
>UniRef100_A4LAL6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
            RepID=A4LAL6_TMGMV
          Length = 1609

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 6/173 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM       +RL  DE  + H G V     ++GC     +GDT+QIPF++R  
Sbjct: 880  VRTVDSFLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939

Query: 251  SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H  KL   +VE    T R P D  + L+    K +  V T S V RS+    I 
Sbjct: 940  NFPYPKHFEKLQVDEVEMGRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIG 996

Query: 422  SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                  SV +      +  TQA+K  L+     KG  N+ T HE QG+TF++V
Sbjct: 997  GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045

[128][TOP]
>UniRef100_P18339 Replicase small subunit n=1 Tax=Tobacco mild green mosaic virus
            RepID=RDRP_TMGMV
          Length = 1609

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 6/173 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS LM       +RL  DE  + H G V     ++GC     +GDT+QIPF++R  
Sbjct: 880  VRTVDSLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQ 939

Query: 251  SFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H  KL   +VE +  T R P D  + L+    K +  V T S V RS+    I 
Sbjct: 940  NFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIG 996

Query: 422  SP---VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                  SV +      +  TQA+K  L+     KG  N+ T HE QG+TF++V
Sbjct: 997  GKGVLNSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDV 1045

[129][TOP]
>UniRef100_UPI0000164AC8 401-kDa viral polyprotein n=2 Tax=Citrus tristeza virus
            RepID=UPI0000164AC8
          Length = 3582

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
            T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 2777 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2836

Query: 248  -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                    +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 2837 VSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2891

Query: 407  VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
            +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 2892 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2949

Query: 563  DNV 571
              V
Sbjct: 2950 KRV 2952

[130][TOP]
>UniRef100_Q9DJT7 Putative uncharacterized protein (Fragment) n=2 Tax=Citrus tristeza
           virus RepID=Q9DJT7_9CLOS
          Length = 371

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[131][TOP]
>UniRef100_Q9DJT6 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
           virus RepID=Q9DJT6_9CLOS
          Length = 301

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[132][TOP]
>UniRef100_Q9DJT2 Putative uncharacterized protein (Fragment) n=4 Tax=Citrus tristeza
           virus RepID=Q9DJT2_9CLOS
          Length = 371

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[133][TOP]
>UniRef100_Q9DJT1 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
           virus RepID=Q9DJT1_9CLOS
          Length = 371

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[134][TOP]
>UniRef100_Q9DJR7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR7_9CLOS
          Length = 371

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[135][TOP]
>UniRef100_Q9DJR5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR5_9CLOS
          Length = 371

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77  TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
           T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 58  TVDSYLMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117

Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                   +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVS 172

Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
           +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230

Query: 563 DNV 571
             V
Sbjct: 231 KRV 233

[136][TOP]
>UniRef100_Q9DJN9 Polyprotein (Fragment) n=9 Tax=Citrus tristeza virus
           RepID=Q9DJN9_9CLOS
          Length = 371

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[137][TOP]
>UniRef100_Q8B3T9 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=Q8B3T9_9CLOS
          Length = 3122

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
            T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 2775 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834

Query: 248  -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                    +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2889

Query: 407  VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
            +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2947

Query: 563  DNV 571
              V
Sbjct: 2948 KRV 2950

[138][TOP]
>UniRef100_Q66237 349-kDa viral polyprotein n=1 Tax=Citrus tristeza virus
            RepID=Q66237_9CLOS
          Length = 3124

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
            T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 2777 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2836

Query: 248  -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                    +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 2837 VSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2891

Query: 407  VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
            +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 2892 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2949

Query: 563  DNV 571
              V
Sbjct: 2950 KRV 2952

[139][TOP]
>UniRef100_C0L2T4 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=C0L2T4_9VIRU
          Length = 1648

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD EQ
Sbjct: 905  SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAEQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[140][TOP]
>UniRef100_B9VB08 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB08_9CLOS
          Length = 3116

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
            +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793

Query: 152  HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
            HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 2849

Query: 302  ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
             ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 2850 -SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908

Query: 482  KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944

[141][TOP]
>UniRef100_B5THC9 p1a n=1 Tax=Citrus tristeza virus RepID=B5THC9_9CLOS
          Length = 3122

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
            T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 2775 TVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834

Query: 248  -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                    +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 2889

Query: 407  VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
            +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETY 2947

Query: 563  DNV 571
              V
Sbjct: 2948 KRV 2950

[142][TOP]
>UniRef100_UPI000019AB7D polyprotein n=2 Tax=Cucurbit yellow stunting disorder virus
            RepID=UPI000019AB7D
          Length = 2482

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
            T DS LM     K  +L  DE F+ H+G   +   L  C+ +  +GD  QIPF++R  + 
Sbjct: 1733 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1792

Query: 257  VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
            + R+HK   LT K     I++R P D  Y L           Y N   PV  N  VLRS+
Sbjct: 1793 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1852

Query: 404  EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
            EV PI S  +   + N   +  T+ E+     A+ KA+  L G C N  T HE QG TF 
Sbjct: 1853 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1908

Query: 566  NVY 574
            +VY
Sbjct: 1909 HVY 1911

[143][TOP]
>UniRef100_Q9DJT0 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
           virus RepID=Q9DJT0_9CLOS
          Length = 366

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77  TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
           T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 53  TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 112

Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                   +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 113 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 167

Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
           +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 168 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 225

Query: 563 DNV 571
             V
Sbjct: 226 KRV 228

[144][TOP]
>UniRef100_Q9DJS7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJS7_9CLOS
          Length = 371

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77  TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
           T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 58  TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117

Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                   +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 172

Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
           +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230

Query: 563 DNV 571
             V
Sbjct: 231 KRV 233

[145][TOP]
>UniRef100_Q9DJR9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJR9_9CLOS
          Length = 371

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 23  ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 82

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 83  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 138

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 139 -SYRCPWDICEWLSEFYPRHVATANVXSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 197

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 198 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233

[146][TOP]
>UniRef100_Q9DJQ9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJQ9_9CLOS
          Length = 371

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77  TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
           T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 58  TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 117

Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                   +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 118 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVS 172

Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
           +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 173 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 230

Query: 563 DNV 571
             V
Sbjct: 231 KRV 233

[147][TOP]
>UniRef100_Q8JUV0 1a n=1 Tax=Cucurbit yellow stunting disorder virus RepID=Q8JUV0_9CLOS
          Length = 1977

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
            T DS LM     K  +L  DE F+ H+G   +   L  C+ +  +GD  QIPF++R  + 
Sbjct: 1733 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1792

Query: 257  VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
            + R+HK   LT K     I++R P D  Y L           Y N   PV  N  VLRS+
Sbjct: 1793 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1852

Query: 404  EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
            EV PI S  +   + N   +  T+ E+     A+ KA+  L G C N  T HE QG TF 
Sbjct: 1853 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1908

Query: 566  NVY 574
            +VY
Sbjct: 1909 HVY 1911

[148][TOP]
>UniRef100_Q70UT1 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
            RepID=Q70UT1_9CLOS
          Length = 2483

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
            T DS LM     K  +L  DE F+ H+G   +   L  C+ +  +GD  QIPF++R  + 
Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793

Query: 257  VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
            + R+HK   LT K     I++R P D  Y L           Y N   PV  N  VLRS+
Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853

Query: 404  EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
            EV PI S  +   + N   +  T+ E+     A+ KA+  L G C N  T HE QG TF 
Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909

Query: 566  NVY 574
            +VY
Sbjct: 1910 HVY 1912

[149][TOP]
>UniRef100_C9EFC7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
            RepID=C9EFC7_9VIRU
          Length = 1648

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ IT R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[150][TOP]
>UniRef100_C9EFC3 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
            RepID=C9EFC3_9VIRU
          Length = 1648

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ IT R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[151][TOP]
>UniRef100_C3V8Q5 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=C3V8Q5_9VIRU
          Length = 1648

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ IT R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[152][TOP]
>UniRef100_B9VB56 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB56_9CLOS
          Length = 3122

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
            T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 2775 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2834

Query: 248  -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                    +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 2835 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVS 2889

Query: 407  VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
            +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 2890 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 2947

Query: 563  DNV 571
              V
Sbjct: 2948 KRV 2950

[153][TOP]
>UniRef100_B9VB20 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB20_9CLOS
          Length = 3116

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
            +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLQLTTQLLFVDECFMV 2793

Query: 152  HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
            HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDFGVSLLHDIDAFIQPEHRIYGEV---- 2849

Query: 302  ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
             ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 2850 -SYRCPWDICERLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908

Query: 482  KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944

[154][TOP]
>UniRef100_A5JM41 p227 n=1 Tax=Cucurbit yellow stunting disorder virus
            RepID=A5JM41_9CLOS
          Length = 1978

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
            T DS LM     K  +L  DE F+ H+G   +   L  C+ +  +GD  QIPF++R  + 
Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793

Query: 257  VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
            + R+HK   LT K     I++R P D  Y L           Y N   PV  N  VLRS+
Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853

Query: 404  EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
            EV PI S  +   + N   +  T+ E+     A+ KA+  L G C N  T HE QG TF 
Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909

Query: 566  NVY 574
            +VY
Sbjct: 1910 HVY 1912

[155][TOP]
>UniRef100_A5JM40 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
            RepID=A5JM40_9CLOS
          Length = 2483

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 66/183 (36%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
            T DS LM     K  +L  DE F+ H+G   +   L  C+ +  +GD  QIPF++R  + 
Sbjct: 1734 TYDSILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANT 1793

Query: 257  VFRHHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSI 403
            + R+HK   LT K     I++R P D  Y L           Y N   PV  N  VLRS+
Sbjct: 1794 ICRYHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSM 1853

Query: 404  EVVPINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFD 565
            EV PI S  +   + N   +  T+ E+     A+ KA+  L G C N  T HE QG TF 
Sbjct: 1854 EVEPITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFP 1909

Query: 566  NVY 574
            +VY
Sbjct: 1910 HVY 1912

[156][TOP]
>UniRef100_Q9DJP4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJP4_9CLOS
          Length = 366

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L+ DECF+ 
Sbjct: 18  ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLLVDECFMV 77

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H+  G+V    
Sbjct: 78  HAGAIGAVXEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRTYGEV---- 133

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 134 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 192

Query: 482 KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
           K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 193 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 228

[157][TOP]
>UniRef100_C8CJL7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
            RepID=C8CJL7_9VIRU
          Length = 1648

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC     FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ IT R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[158][TOP]
>UniRef100_Q9Q6Q4 Helicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1
           RepID=Q9Q6Q4_9CLOS
          Length = 398

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 57/164 (34%), Positives = 81/164 (49%), Gaps = 16/164 (9%)
 Frame = +2

Query: 128 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 298
           + DE ++ H G+        G  EVI +GD  QIPF++R  +FV  +  +     +++  
Sbjct: 163 LIDEVYMLHKGMFQLTVVSMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEEQIDYT 222

Query: 299 LITWRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 457
            I++R PAD  Y L        K  Y N      + R LRS E VPI +P         +
Sbjct: 223 DISYRCPADVCYVLSSMTDARGKKMYPNGVFPNGDVRPLRSFEKVPIATPEDALLYEADV 282

Query: 458 YLCHTQAEKAVL-KAQTHL-----KGCDNIFTTHEAQGKTFDNV 571
           YL  TQ EKA + KA   +     K   ++ TTHEAQGKT++NV
Sbjct: 283 YLTMTQNEKAEMQKAVAKMEVVAGKKRPDVITTHEAQGKTYENV 326

[159][TOP]
>UniRef100_Q991N2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2
            RepID=Q991N2_9CLOS
          Length = 1980

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTK-LHYIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAA 175
            +N  S+ ++   ++    T+ + Y RT DS +M++  V K   +  DECFL HAG +   
Sbjct: 1259 ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRVGKCDTVCIDECFLVHAGELKIC 1318

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
              LAG  EV  +GD++QIPF++R  +FV R+  +     KV ++ +++R P+D    L +
Sbjct: 1319 TALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGFKVIKRNVSYRCPSDVCVMLSE 1378

Query: 347  YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
               K+KR        VK   +SR  RS+    I+S   V+     +++  TQ EK  +  
Sbjct: 1379 --KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVNN 1436

Query: 500  QT---HLKGCDNIFTTHEAQGKT 559
            +     LK   N  T HE QGKT
Sbjct: 1437 EAKARRLKVSTN--TVHEIQGKT 1457

[160][TOP]
>UniRef100_Q991N1 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q991N1_9CLOS
          Length = 1528

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTK-LHYIRTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAA 175
            +N  S+ ++   ++    T+ + Y RT DS +M++  V K   +  DECFL HAG +   
Sbjct: 1259 ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRVGKCDTVCIDECFLVHAGELKIC 1318

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
              LAG  EV  +GD++QIPF++R  +FV R+  +     KV ++ +++R P+D    L +
Sbjct: 1319 TALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGFKVIKRNVSYRCPSDVCVMLSE 1378

Query: 347  YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
               K+KR        VK   +SR  RS+    I+S   V+     +++  TQ EK  +  
Sbjct: 1379 --KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVNN 1436

Query: 500  QT---HLKGCDNIFTTHEAQGKT 559
            +     LK   N  T HE QGKT
Sbjct: 1437 EAKARRLKVSTN--TVHEIQGKT 1457

[161][TOP]
>UniRef100_Q0GK55 Polyprotein 1a n=2 Tax=Strawberry chlorotic fleck associated virus
            RepID=Q0GK55_9CLOS
          Length = 2787

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 63/202 (31%), Positives = 94/202 (46%), Gaps = 14/202 (6%)
 Frame = +2

Query: 8    RSSADELK------ETIDCSPLTKL-HYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLV 166
            R +  ELK      E +    L KL   I T DSYLM    VK   ++ DECF+ HAG V
Sbjct: 2438 RRAKSELKGNLKEGENLSLGDLKKLTSTIYTVDSYLMHHINVKGDIMLVDECFMMHAGAV 2497

Query: 167  YAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL-----ITWRSPADAT 331
             AA   + C +   +GD+ QI ++ RN       H +   +  ++     +++R P D  
Sbjct: 2498 TAAFQFSQCKKAALYGDSRQIHYIQRNDLGCSLLHDINDFLSDEVRVYGDVSFRCPWDVC 2557

Query: 332  YCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQ--T 505
              L   +  + R    +S    S+ VV INS   V  + + +YL +TQ EK  ++     
Sbjct: 2558 EWLSLTYPVHIRSTNEDSVGKSSMRVVCINSVEEVPVDQDHVYLTYTQDEKRDVRKHLLK 2617

Query: 506  HLKGCDNIFTTHEAQGKTFDNV 571
             +  C  + T HEAQG T+  V
Sbjct: 2618 SVTDCPVVLTVHEAQGATYKYV 2639

[162][TOP]
>UniRef100_P87587 P346 n=1 Tax=Citrus tristeza virus RepID=P87587_9CLOS
          Length = 3107

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
 Frame = +2

Query: 29   KETIDCSPLTKLHYIRTC------DSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAG 190
            +E +D   L K H ++T       DSYLM+   +K   L  D CF+ HAG + A      
Sbjct: 2739 RELMDRKMLAK-HVVKTAGRVFTVDSYLMNHIRLKTDLLFVDVCFMVHAGAIGAVVEFTS 2797

Query: 191  CSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCL 340
               V+ FGD+ QI ++ RN           +F+   H++ G+V     ++R P D    L
Sbjct: 2798 RKAVVFFGDSRQIHYIHRNDFGVSLLHDIDAFIEPQHRIYGEV-----SYRCPWDICEWL 2852

Query: 341  EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--- 511
             K++ ++     T S    S+ +  IN    V  +++A Y+ +TQAEK  L  Q HL   
Sbjct: 2853 SKFYPRHVATANTGSIGRSSVSIEIINGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRL 2910

Query: 512  -----KGCDNIFTTHEAQGKTFDNV 571
                 K    + T HE QG+T+  V
Sbjct: 2911 TVAGTKAVPIVNTVHEVQGETYKKV 2935

[163][TOP]
>UniRef100_D0EWY6 194 kDa readthrough protein n=2 Tax=Tobacco rattle virus
            RepID=D0EWY6_9VIRU
          Length = 1707

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 65/198 (32%), Positives = 91/198 (45%), Gaps = 8/198 (4%)
 Frame = +2

Query: 2    SNRSSADELKETIDCS--PLTKLHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
            + R++ D+L E       P      ++T DS+LM     ++    L FDE  + HAG+VY
Sbjct: 928  TGRAATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVY 987

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
              A +A     I  GD  QI F  R      R   L GK   V  K  T+RSPAD    L
Sbjct: 988  FCAQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVL 1047

Query: 341  EKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL-KG 517
             K++  +   V+T++    S+ V  I S   V     A Y+   Q+EK  L     L K 
Sbjct: 1048 NKFYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKV 1104

Query: 518  CDNIFTTHEAQGKTFDNV 571
               + T HE+QG+TF +V
Sbjct: 1105 AAKVSTVHESQGETFKDV 1122

[164][TOP]
>UniRef100_C0L2S6 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=C0L2S6_9VIRU
          Length = 1648

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATTDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[165][TOP]
>UniRef100_B7FAV2 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 10
            RepID=B7FAV2_9CLOS
          Length = 2294

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRL---IFDECFLQHAGLVYA 172
            ++R++AD L E  D    +K   + T DS++ S     ++ +   + DEC++ HAGL   
Sbjct: 2017 ASRNAADSLNEYWDSDINSKRVIVMTVDSFIFSGGRFYSEDIYSVLLDECYMSHAGLCIL 2076

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERKLITWRSPADATYCLE 343
             A L   S +  +GD  Q+PF++RNP F      L    G    KL+T+R PAD  Y + 
Sbjct: 2077 IAALTNPSFLSFYGDRRQVPFINRNPIFRDSMGMLKVSQGSYTEKLLTYRCPADICYWMS 2136

Query: 344  KYFYKN------KRPVKT--NSRVLRSIEVVPIN-SPVSVERNTNALYLCHTQAEKAVLK 496
               Y          PVKT  + R L+S+ + P + S +   ++ + + +  TQ EK  L 
Sbjct: 2137 SVDYLKPGGRLYSGPVKTVKDGRPLKSVRITPFSPSQLDFMKHVDRV-MTFTQLEKTDLI 2195

Query: 497  AQTHLKGCDN-------IFTTHEAQGKTFDNV 571
            ++    G  +       I T  E+QG+T+  V
Sbjct: 2196 SKFQTAGFGDRDAAEQLIGTVAESQGETYSRV 2227

[166][TOP]
>UniRef100_A0SEL1 126 kDa replicase n=1 Tax=Maracuja mosaic virus RepID=A0SEL1_9VIRU
          Length = 1103

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+L++   V+   +  DE  + H G++  +     C  +  FGDT+QIPF++R  
Sbjct: 871  VRTFDSFLINRVPVRFDTVWVDEGLMVHTGVIQFSRLRTNCKRMYVFGDTKQIPFINRVM 930

Query: 251  SFVF----RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPI 418
            +F +    R  K+   +E + +T R PAD T  L   +  +   V T S  LRS++   +
Sbjct: 931  TFDYPECLRSLKV-NSIETRSVTKRCPADVTVYLSSQYESH---VLTTSNTLRSVDAQLL 986

Query: 419  -NSPVSVERNT--NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
              + V   R T  N   +  TQA+KA+LK   ++     + T HE QG TFD V
Sbjct: 987  KGAAVLTPRETVLNGKIVTFTQADKALLKKNGYI----GVNTVHEVQGDTFDEV 1036

[167][TOP]
>UniRef100_Q9DJP9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJP9_9CLOS
          Length = 357

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 26/216 (12%)
 Frame = +2

Query: 2   SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
           +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 12  ANKNSQTEISQRISSELMSRKRSAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 71

Query: 152 HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
           HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 72  HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 127

Query: 302 ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
            ++R P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 128 -SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 186

Query: 482 KAVLKAQ------THLKGCDNIFTTHEAQGKTFDNV 571
           K  L+           K    + T HE QG+T+  V
Sbjct: 187 KNDLQKHHGRLTVGRTKVVPIVNTVHEVQGETYKRV 222

[168][TOP]
>UniRef100_Q8QZF3 126 kDa protein n=1 Tax=Pepper mild mottle virus RepID=Q8QZF3_9VIRU
          Length = 1117

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+      Q  RL  DE  + H G V     ++ CSE   +GDT+QIP+++R
Sbjct: 884  VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L +   K +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[169][TOP]
>UniRef100_Q8QTJ1 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=Q8QTJ1_9VIRU
          Length = 1648

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[170][TOP]
>UniRef100_Q8QTI9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=Q8QTI9_9VIRU
          Length = 1648

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[171][TOP]
>UniRef100_Q5DWU9 Replicase large subunit n=2 Tax=Pepper mild mottle virus
            RepID=Q5DWU9_9VIRU
          Length = 1612

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+      Q  RL  DE  + H G V     ++ CSE   +GDT+QIP+++R
Sbjct: 884  VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L +   K +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[172][TOP]
>UniRef100_Q4W8Q6 126k protein n=1 Tax=Pepper mild mottle virus RepID=Q4W8Q6_9VIRU
          Length = 1117

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+      Q  RL  DE  + H G V     ++ CSE   +GDT+QIP+++R
Sbjct: 884  VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L +   K +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[173][TOP]
>UniRef100_Q2XP16 P353 n=1 Tax=Citrus tristeza virus RepID=Q2XP16_9CLOS
          Length = 3124

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 61/199 (30%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
 Frame = +2

Query: 29   KETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIG 208
            K   DCS       + T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ 
Sbjct: 2766 KYVTDCSSR-----VFTVDSYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVF 2820

Query: 209  FGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYK 358
            FGD++QI ++ RN           +F+   H++ G+V     ++R P D    L ++  +
Sbjct: 2821 FGDSKQIHYIHRNDLGVSFVADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFNPR 2875

Query: 359  NKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------K 514
            +       S    S+ +  IN    V  +  A Y+ +TQAEK  L  Q HL        K
Sbjct: 2876 HVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNK 2933

Query: 515  GCDNIFTTHEAQGKTFDNV 571
                + T HE QG+T+  V
Sbjct: 2934 VVPIVNTVHEVQGETYKRV 2952

[174][TOP]
>UniRef100_Q1XG51 Replicase large subunit n=2 Tax=Pepper mild mottle virus
            RepID=Q1XG51_9VIRU
          Length = 1612

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+      Q  RL  DE  + H G V     ++ CSE   +GDT+QIP+++R
Sbjct: 884  VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L +   K +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[175][TOP]
>UniRef100_D0EAL9 349 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAL9_9CLOS
          Length = 3116

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 59/213 (27%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
            +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTGAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793

Query: 152  HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK-----LITWRS 316
            HAG + A      C  V+ FGD++QI ++ RN   V   H +   ++ +      +++R 
Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHCIYGEVSYRC 2853

Query: 317  PADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK 496
            P D    L +++ ++       S    S+ +  IN    V  +  A Y+ +TQAEK  L 
Sbjct: 2854 PWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCDDVPYDKAAKYIVYTQAEKNDL- 2912

Query: 497  AQTHL--------KGCDNIFTTHEAQGKTFDNV 571
             Q HL        K    + T HE QG+T+  V
Sbjct: 2913 -QKHLSRLTVGRTKVVPIVNTVHEVQGETYKRV 2944

[176][TOP]
>UniRef100_C0L2T0 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=C0L2T0_9VIRU
          Length = 1648

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[177][TOP]
>UniRef100_B9VB44 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB44_9CLOS
          Length = 3121

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
            T DSYLM+   +  Q L  DECF+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 2774 TVDSYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 2833

Query: 248  -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                    +F+   H + G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 2834 VSLLHDIDAFIQPEHHIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVS 2888

Query: 407  VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
            +  IN    V  +  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 2889 IEEINGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 2946

Query: 563  DNV 571
              V
Sbjct: 2947 KRV 2949

[178][TOP]
>UniRef100_B0FWD9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=B0FWD9_9VIRU
          Length = 1648

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[179][TOP]
>UniRef100_A7KY79 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=A7KY79_9VIRU
          Length = 1648

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[180][TOP]
>UniRef100_A4PE19 Replicase large subunit n=2 Tax=Pepper mild mottle virus
            RepID=A4PE19_9VIRU
          Length = 1612

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+      Q  RL  DE  + H G V     ++ CSE   +GDT+QIP+++R
Sbjct: 884  VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L +   K +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[181][TOP]
>UniRef100_P29098 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain
            Spain) RepID=RDRP_PMMVS
          Length = 1612

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+      Q  RL  DE  + H G V     ++ CSE   +GDT+QIP+++R
Sbjct: 884  VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L +   K +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[182][TOP]
>UniRef100_P89657 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain
            Japan) RepID=RDRP_PMMVJ
          Length = 1612

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+      Q  RL  DE  + H G V     ++ CSE   +GDT+QIP+++R
Sbjct: 884  VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L +   K +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[183][TOP]
>UniRef100_UPI00001BBB39 polyprotein n=1 Tax=Little cherry virus 2 RepID=UPI00001BBB39
          Length = 2150

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175
            +N  S+ ++ + ++    T+ + Y RT DS +M S  A K   +  DECFL HAG +   
Sbjct: 1371 ANLESSLDINKQLNAERRTEGVRYARTIDSRVMNSLRAGKCDTVCIDECFLVHAGELKIC 1430

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
            A LAG  EV  +GD++QIPF++R  SF  ++  +     KV ++ +++R P+D    L +
Sbjct: 1431 AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 1490

Query: 347  YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
               ++KR        VK   +SR  RS+    I+S   V+     +++  TQ EK  +  
Sbjct: 1491 --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSN 1548

Query: 500  QTH---LKGCDNIFTTHEAQGKT 559
            +     LK   N  T HE QGKT
Sbjct: 1549 EARARKLKVSSN--TVHEIQGKT 1569

[184][TOP]
>UniRef100_Q8BEP9 Methyltransferase/helicase polyprotein n=3 Tax=Grapevine rootstock
            stem lesion associated virus RepID=Q8BEP9_9CLOS
          Length = 2931

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            I T D+YLM      A  L  DECF+ HAG V A      C +V+ FGD+ QI ++ RN 
Sbjct: 2611 IYTIDAYLMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2670

Query: 251  SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
                 +  L   V+ +      +++R P D    L   +      VK  S    S+ +  
Sbjct: 2671 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINE 2730

Query: 416  INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
            INS   +  +  + YLC  Q+EK  +      KG    N+ T HEAQG+T+  V
Sbjct: 2731 INSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARV 2784

[185][TOP]
>UniRef100_Q9IR66 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=Q9IR66_9VIRU
          Length = 1648

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[186][TOP]
>UniRef100_Q7T738 P182 n=1 Tax=Little cherry virus 2 RepID=Q7T738_9CLOS
          Length = 1640

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175
            +N  S+ ++ + ++    T+ + Y RT DS +M S  A K   +  DECFL HAG +   
Sbjct: 1371 ANLESSLDINKQLNAERRTEGVRYARTIDSRVMNSLRAGKCDTVCIDECFLVHAGELKIC 1430

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
            A LAG  EV  +GD++QIPF++R  SF  ++  +     KV ++ +++R P+D    L +
Sbjct: 1431 AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 1490

Query: 347  YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
               ++KR        VK   +SR  RS+    I+S   V+     +++  TQ EK  +  
Sbjct: 1491 --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSN 1548

Query: 500  QTH---LKGCDNIFTTHEAQGKT 559
            +     LK   N  T HE QGKT
Sbjct: 1549 EARARKLKVSSN--TVHEIQGKT 1569

[187][TOP]
>UniRef100_Q14V59 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=Q14V59_9VIRU
          Length = 1648

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFIFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[188][TOP]
>UniRef100_C7EN47 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
            RepID=C7EN47_9VIRU
          Length = 1648

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC     FGD +Q
Sbjct: 905  SPVATSDNVRTFDSFVMNRKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFIFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[189][TOP]
>UniRef100_P69514 Replicase small subunit n=1 Tax=Cucumber green mottle mosaic virus
            (watermelon strain SH) RepID=RDRP_CGMVS
          Length = 1648

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P D T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[190][TOP]
>UniRef100_Q806Y9 Methyltransferase and helicase polyprotein n=1 Tax=Cucumber yellows
            virus RepID=Q806Y9_9CLOS
          Length = 1887

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 60/197 (30%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
 Frame = +2

Query: 23   ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199
            E+   +    +T  H Y  T DS LM    V    L  DE F+ H G  +A   L  C  
Sbjct: 1624 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEVTITNLYCDEIFMVHCGEWFACLNLIKCQS 1683

Query: 200  VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370
            +  FGD  QIP+++R P+ V  H     +T  +E   I++R P D  Y L         P
Sbjct: 1684 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 1743

Query: 371  V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520
            +         +N   LRS+ V P+NSP  ++      ++  TQ EK  +       LK  
Sbjct: 1744 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 1803

Query: 521  DNIFTTHEAQGKTFDNV 571
             +  T +E QG TF  V
Sbjct: 1804 KSANTVNEVQGGTFPTV 1820

[191][TOP]
>UniRef100_Q49IH3 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2
            RepID=Q49IH3_9CLOS
          Length = 2936

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            I T D+YLM      A  L  DECF+ HAG V A      C +V+ FGD+ QI ++ RN 
Sbjct: 2616 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERND 2675

Query: 251  SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
                 +  L   V+ +      +++R P D    L   +      VK  S    S+ +  
Sbjct: 2676 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2735

Query: 416  INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
            INS   +  +  + YLC  Q+EK  +      KG    N+ T HEAQG+T+  V
Sbjct: 2736 INSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARV 2789

[192][TOP]
>UniRef100_Q2V8A8 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine
            leafroll-associated virus 2 RepID=Q2V8A8_9CLOS
          Length = 1317

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            I T D+YLM      A  L  DECF+ HAG V A      C +V+ FGD+ QI ++ RN 
Sbjct: 997  IYTIDAYLMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 1056

Query: 251  SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
                 +  L   V+ +      +++R P D    L   +      VK  S    S+ +  
Sbjct: 1057 LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINE 1116

Query: 416  INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
            INS   +  +  + YLC  Q+EK  +      KG    N+ T HEAQG+T+  V
Sbjct: 1117 INSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARV 1170

[193][TOP]
>UniRef100_Q9DJS3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
           RepID=Q9DJS3_9CLOS
          Length = 370

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
 Frame = +2

Query: 77  TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN--- 247
           T DSYLM+   +  Q L  DE F+ HAG + A      C  V+ FGD++QI ++ RN   
Sbjct: 57  TVDSYLMNHLRLTTQLLFVDEYFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLG 116

Query: 248 -------PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE 406
                   +F+   H++ G+V     ++R P D    L +++ ++       S    S+ 
Sbjct: 117 VSLLHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVS 171

Query: 407 VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTF 562
           +  IN    V  N  A Y+ +TQAEK  L  Q HL        K    + T HE QG+T+
Sbjct: 172 IEEINGCDDVPYNKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETY 229

Query: 563 DNV 571
             V
Sbjct: 230 KRV 232

[194][TOP]
>UniRef100_Q83943 1a protein n=1 Tax=Olive latent virus 2 RepID=Q83943_OLV2
          Length = 908

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 70/206 (33%), Positives = 100/206 (48%), Gaps = 21/206 (10%)
 Frame = +2

Query: 23   ELKETIDCSPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEV 202
            +LK   DC+       IRT DSYL+    V+A+RL  DE  L H G + AA   A C + 
Sbjct: 668  QLKPGTDCAKR-----IRTVDSYLLKPD-VQAKRLFIDEAGLVHPGKLLAAMRFAECDDC 721

Query: 203  IGFGDTEQIPFVSRNPSF---VFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPV 373
            + FGD+EQIPFV+   S     F   ++  +  R+  T+R PAD T  L   + K K  +
Sbjct: 722  LLFGDSEQIPFVNIVESLQPAKFLKLEVDAREVRE-TTYRCPADVTATLATLYKKKK--I 778

Query: 374  KTNSRVLRSIEVVPINSPVSVE-RNTNALYLCHTQAEKAVLKAQTHLKGCDNIF------ 532
             T S+VL+S+    + S  +V   + ++ +L   QA+KA L         D+++      
Sbjct: 779  VTKSKVLKSVTSKSLASASAVSGLDPHSWHLTMYQADKAELVRVARTNQMDDVWIKEHIK 838

Query: 533  TTHEAQG-----------KTFDNVYF 577
            T HEAQG           KTFD   F
Sbjct: 839  TVHEAQGISVPHVKLYRFKTFDQPLF 864

[195][TOP]
>UniRef100_B9VB32 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB32_9CLOS
          Length = 3116

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 28/218 (12%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIR----------TCDSYLMSASAVKAQRLIFDECFLQ 151
            +N++S  E+ + I    +++    +          T DSYLM+   +  Q L  DECF+ 
Sbjct: 2734 ANKNSQTEISQRISSELMSRKRAAKYVTSAASRVFTVDSYLMNHLRLTTQLLFVDECFMV 2793

Query: 152  HAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN----------PSFVFRHHKLTGKVERKL 301
            HAG + A      C  V+ FGD++QI ++ RN           +F+   H++ G+V    
Sbjct: 2794 HAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSLLHDIDAFIQPEHRIYGEV---- 2849

Query: 302  ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAE 481
             ++R P D      +++ ++       S    S+ +  IN    V  +  A Y+ +TQAE
Sbjct: 2850 -SYRCPWDICEWPSEFYPRHVATANVGSIGKSSVSIEEINGCDDVPYDKAAKYIVYTQAE 2908

Query: 482  KAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 571
            K  L  Q HL        K    + T HE QG+T+  V
Sbjct: 2909 KNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944

[196][TOP]
>UniRef100_P90211 Replicase small subunit n=1 Tax=Obuda pepper virus RepID=RDRP_TMOB
          Length = 1616

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 9/176 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSAS---AVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
            ++T DS+LM+       + +RL  DE  + H G VY    L+ C+E   FGDT+QIP+++
Sbjct: 881  VKTVDSFLMNLGKGPVCQFKRLFVDEGLMLHPGCVYFLVKLSLCNEAFVFGDTQQIPYIN 940

Query: 242  RNPSFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
            R  +F F  H    +  + E++  T R P D T+ L + +      V T S+  RS+ + 
Sbjct: 941  RVQNFPFPQHFSKLIVDETEKRRTTLRCPVDVTHFLNQCY---DGAVTTTSKTQRSVGLE 997

Query: 413  PINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
             +     +   T  L    +  TQ++K  + +    +G  ++ T HE QG+T++ V
Sbjct: 998  VVGGAAVMNPVTKPLKGKIVTFTQSDKLTMLS----RGYQDVNTVHEIQGETYEEV 1049

[197][TOP]
>UniRef100_Q91E35 Replicase large subunit n=2 Tax=Pepper mild mottle virus
            RepID=Q91E35_9VIRU
          Length = 1612

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+    + Q  RL  DE  + H G V     ++ CSE   +GDT+QIP+++R
Sbjct: 884  VRTVDSFLMNYGRGQCQFKRLFLDEGLMLHPGCVNFLVGMSLCSEAFIYGDTQQIPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L + +   +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDVVETRRTTLRCPADITFFLNQRY---EGQVMCASSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[198][TOP]
>UniRef100_Q8UYT4 1a protein n=1 Tax=Tomato aspermy virus RepID=Q8UYT4_TAV
          Length = 993

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
 Frame = +2

Query: 2    SNRSSADELKETI-DCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175
            +N+ SA ++++ + +C+   +   ++RT DS LM+ +  + QR++ DE  L H G + A 
Sbjct: 738  ANKKSALDVRQALFNCTDSKEATTFVRTADSILMNDTN-EVQRVLVDEVVLLHFGQLCAV 796

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328
             +       I FGD+EQI F SR+ SF  RH   +  + +    T+RSP D        A
Sbjct: 797  MSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDETDTADTTFRSPQDVIKVVKCMA 856

Query: 329  TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
            +  L+K  +       + S+V RS+    + S   V+   +  Y+  TQA+K  L+ +  
Sbjct: 857  SKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLTEDRFYITMTQADKTALRTRAR 916

Query: 509  LKGCDNIF------TTHEAQGKTFDNV 571
                 N F      TTHE+QG + D+V
Sbjct: 917  ELNMSNDFIEHRIKTTHESQGVSEDHV 943

[199][TOP]
>UniRef100_Q8JTI3 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q8JTI3_9CLOS
          Length = 1112

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 17/203 (8%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTK-LHYIRTCDSYLM-SASAVKAQRLIFDECFLQHAGLVYAA 175
            +N  S+ ++   ++    T+ + Y RT DS +M S  A +   +  DECFL HAG +   
Sbjct: 843  ANLESSLDINRQLNAERRTEGVRYARTIDSRVMNSLRAGRCDTVCIDECFLVHAGELKIC 902

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG---KVERKLITWRSPADATYCLEK 346
            A LAG  EV  +GD++QIPF++R  SF  ++  +     KV ++ +++R P+D    L +
Sbjct: 903  AVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSE 962

Query: 347  YFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKA 499
               ++KR        VK   +SR  RS+    I+S   V+     +++  TQ EK ++  
Sbjct: 963  --KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSVTDVDMENGDVFVTFTQDEKHMVSN 1020

Query: 500  QT---HLKGCDNIFTTHEAQGKT 559
            +     LK   N  T HE QGKT
Sbjct: 1021 EAKARKLKVSSN--TVHEIQGKT 1041

[200][TOP]
>UniRef100_O71209 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine
            leafroll-associated virus 2 RepID=O71209_9CLOS
          Length = 2473

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            I T D+YLM      A  L  DECF+ HAG V A      C +V+ FGD+ QI ++ RN 
Sbjct: 2153 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2212

Query: 251  SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
                 +  L   V+ +      I++R P D    L   +      VK  S    S+ +  
Sbjct: 2213 LDKCLYGDLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2272

Query: 416  INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
            INS   +  +  + +LC  Q+EK  +      KG    N+ T HEAQG+T+  V
Sbjct: 2273 INSVDDLVPDVGSTFLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARV 2326

[201][TOP]
>UniRef100_B7U5T5 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2
            RepID=B7U5T5_9CLOS
          Length = 2936

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 56/174 (32%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            I T D+YLM      A  L  DECF+ HAG V A      C +V+ FGD+ QI ++ RN 
Sbjct: 2616 IYTIDAYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNE 2675

Query: 251  SFVFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
                 +  L   V+ +      I++R P D    L   +      VK  S    S+ +  
Sbjct: 2676 LDKCLYGDLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINE 2735

Query: 416  INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNV 571
            INS   +  +  + +LC  Q+EK  +      KG    N+ T HEAQG+T+  V
Sbjct: 2736 INSVDDLVPDVGSTFLCMLQSEKLEISKHFIRKGLPKLNVLTVHEAQGETYARV 2789

[202][TOP]
>UniRef100_A8RS49 Polyprotein n=1 Tax=Plum bark necrosis stem pitting-associated virus
            RepID=A8RS49_9CLOS
          Length = 2343

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 16/189 (8%)
 Frame = +2

Query: 53   LTKLHYIRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTE 223
            L K+  +RT DS L++   +       ++ DEC+L HAG + A  +L   S+V  +GD  
Sbjct: 2089 LLKIIRVRTVDSALINFDNSPIYTNCEMLIDECYLPHAGQLQAIFSLYTPSKVSMYGDRH 2148

Query: 224  QIPFVSRNPSFV---FRHHKLTGKVERKLITWRSPADATY---CLEKYFYK-NKRPVKTN 382
            QIPF+ R   FV     H+    K    L ++R PAD  Y   C+ K   K     V T 
Sbjct: 2149 QIPFIPRTEGFVCTRAEHNIDEDKYSEVLKSYRCPADICYWMNCVAKAPEKVYSGLVTTF 2208

Query: 383  SRVLRSIEVVP-INSPVSVERNTNALYLCHTQAEKA-----VLKAQTHLKGCDNIFTTHE 544
            ++VLRS+  +P    P  + +  NA+ L  TQA+K      V  A+  +K   ++ T HE
Sbjct: 2209 NKVLRSVVKIPSAVIPSHLIKEANAI-LTFTQADKEMAFKFVAGAKLGMKQKIHVSTIHE 2267

Query: 545  AQGKTFDNV 571
            AQGKTF+NV
Sbjct: 2268 AQGKTFENV 2276

[203][TOP]
>UniRef100_P28931 Methyltransferase n=1 Tax=Tomato aspermy virus RepID=ORF1A_TAV
          Length = 993

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
 Frame = +2

Query: 2    SNRSSADELKETI-DCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175
            +N+ SA ++++ + +C+   +   ++RT DS LM+ +  + QR++ DE  L H G + A 
Sbjct: 738  ANKKSALDVRQALFNCTDSKEATTFVRTADSILMNDTN-EVQRVLVDEVVLLHFGQLCAV 796

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328
             +       I FGD+EQI F SR+ SF  RH   +  + +    T+RSP D        A
Sbjct: 797  MSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDETDTADTTFRSPQDVIKVVKCMA 856

Query: 329  TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
            +  L+K  +       + S+V RS+    + S   V+   +  Y+  TQA+K  L+ +  
Sbjct: 857  SKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLTEDRFYITMTQADKTALRTRAR 916

Query: 509  LKGCDNIF------TTHEAQGKTFDNV 571
                 N F      TTHE+QG + D+V
Sbjct: 917  ELNMSNDFIEHRIKTTHESQGVSEDHV 943

[204][TOP]
>UniRef100_Q5I2N9 Replicase large subunit n=2 Tax=Pepper mild mottle virus
            RepID=Q5I2N9_9VIRU
          Length = 1612

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 58/177 (32%), Positives = 93/177 (52%), Gaps = 10/177 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR 244
            +RT DS+LM+      Q  RL  DE  + H G V     ++ CSE   +GDT+Q P+++R
Sbjct: 884  VRTVDSFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQTPYINR 943

Query: 245  NPSFVFRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EV 409
              +F +  H        VE +  T R PAD T+ L +   K +  V   S V RS+  EV
Sbjct: 944  VATFPYPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEV 1000

Query: 410  V---PINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    + +PVS  +      +  TQ++K++L +    +G +++ T HE QG+TF++V
Sbjct: 1001 IQGAAVMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDV 1051

[205][TOP]
>UniRef100_C7B977 ORF 1a/1b fusion protein n=2 Tax=Tomato infectious chlorosis virus
            RepID=C7B977_9CLOS
          Length = 2394

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
 Frame = +2

Query: 71   IRTCDSYLMSA-SAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247
            +RT DS LM+  + ++  +  FDE ++ H+G     A     + +  +GD  Q+P+++RN
Sbjct: 1642 VRTYDSLLMNTPNVIELDKAYFDEAYMIHSGQFLVCAAKLKYNNLYCYGDVNQLPYINRN 1701

Query: 248  PSFVFRHHKLTGKVERKL----ITWRSPADATYCLE-------KYFY----KNKRPVKTN 382
            P +V  +H  +   + +L     T+R PAD  Y L        K  Y    KN  P    
Sbjct: 1702 P-YVTDYHSFSIFEDVELNHDDKTFRCPADVCYLLSNLKNDAGKPLYPRGVKNSNP---G 1757

Query: 383  SRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLK---GCDN-IFTTHEAQ 550
            S+V+RS EV  +N    +E   +  YL  TQ EK  ++ Q H+    GC++ + T HEAQ
Sbjct: 1758 SKVIRSCEVEGVNGVNQIEIQKDVKYLTFTQDEK--IELQHHIARSGGCEHEVNTVHEAQ 1815

Query: 551  GKTFDNV 571
            G TF +V
Sbjct: 1816 GCTFPSV 1822

[206][TOP]
>UniRef100_Q6PY89 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
            RepID=Q6PY89_9VIRU
          Length = 1612

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM        +L  DE  + H G V     L+ C E + FGDTEQIPF++R  
Sbjct: 875  VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934

Query: 251  SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H  T      E + ++ R PAD T+ +     K    V   S V+RS++   + 
Sbjct: 935  NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTSDVIRSVDAEVVR 991

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571
                    +  L    +  TQ++KA LK + +  +     + T HE QG+TF++V
Sbjct: 992  GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEVNTVHEIQGETFEDV 1046

[207][TOP]
>UniRef100_Q5I5A7 1a protein (Fragment) n=1 Tax=Beet pseudo-yellows virus
           RepID=Q5I5A7_9CLOS
          Length = 456

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 59/197 (29%), Positives = 85/197 (43%), Gaps = 14/197 (7%)
 Frame = +2

Query: 23  ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199
           E+   +    +T  H Y  T DS LM         L  DE F+ H G  +A   L  C  
Sbjct: 238 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQS 297

Query: 200 VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370
           +  FGD  QIP+++R P+ V  H     +T  +E   I++R P D  Y L         P
Sbjct: 298 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 357

Query: 371 V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520
           +         +N   LRS+ V P+NSP  ++      ++  TQ EK  +       LK  
Sbjct: 358 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 417

Query: 521 DNIFTTHEAQGKTFDNV 571
            +  T +E QG TF +V
Sbjct: 418 KSANTVNEVQGGTFPSV 434

[208][TOP]
>UniRef100_B3FQ64 Polyprotein (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3
            RepID=B3FQ64_9CLOS
          Length = 2233

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
 Frame = +2

Query: 119  QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298
            +R++ DE ++ H GL+       G SE + FGD  QIPF++R   F         K E  
Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFAIGASEGLFFGDINQIPFINREKVFRMDCAAFVPKKESV 2063

Query: 299  LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448
            + T   +R P D  Y L        +  Y  K     +  V+RS+   PI +   V    
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSVTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123

Query: 449  NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571
              +YLC TQ EK+ +K     KG +  + T HEAQGKTF +V
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDV 2165

[209][TOP]
>UniRef100_A9EEU4 129K replicase protein n=1 Tax=Cucumber green mottle mosaic virus
            RepID=A9EEU4_9VIRU
          Length = 1144

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
 Frame = +2

Query: 47   SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQ 226
            SP+     +RT DS++M+    K   +  DE  + H GL+  A  ++GC +   FGD +Q
Sbjct: 905  SPVATNDNVRTFDSFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQ 964

Query: 227  IPFVSRNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLR 397
            IPF++R  +F +     T     VER+ +T R P + T  L   +   K  V T S V+ 
Sbjct: 965  IPFINRVMNFDYPKELRTLIVDNVERRYVTHRCPRELTSFLNTIY---KAAVATTSPVVH 1021

Query: 398  SIEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
            S++ + ++    +      +    +  TQ++K  L       G +++ T HE QG+TF+
Sbjct: 1022 SVKAIKVSGAGILRPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFE 1076

[210][TOP]
>UniRef100_Q6VRA8 ORF 1a/1b fusion polyprotein n=2 Tax=Beet pseudo-yellows virus
            RepID=Q6VRA8_9CLOS
          Length = 2441

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 14/197 (7%)
 Frame = +2

Query: 23   ELKETIDCSPLTKLH-YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSE 199
            E+   +    +T  H Y  T DS LM         L  DE F+ H G  +A   L  C  
Sbjct: 1673 EIVSKLKARGVTSPHLYAMTYDSLLMKGKEFTITNLYCDEIFMVHCGEWFACLNLIKCQS 1732

Query: 200  VIGFGDTEQIPFVSRNPSFVFRH---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRP 370
            +  FGD  QIP+++R P+ V  H     +T  +E   I++R P D  Y L         P
Sbjct: 1733 IECFGDKNQIPYINRVPNTVCHHSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNP 1792

Query: 371  V--------KTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGC 520
            +         +N   LRS+ V P+NSP  ++      ++  TQ EK  +       LK  
Sbjct: 1793 LYPGGVYSAGSNCDNLRSLSVEPMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDS 1852

Query: 521  DNIFTTHEAQGKTFDNV 571
             +  T +E QG TF  V
Sbjct: 1853 KSANTVNEVQGGTFPTV 1869

[211][TOP]
>UniRef100_C0MNB2 1a protein n=1 Tax=Gayfeather mild mottle virus RepID=C0MNB2_9BROM
          Length = 988

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 66/207 (31%), Positives = 102/207 (49%), Gaps = 17/207 (8%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTK--LHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAA 175
            +N+ SA ++++ +  S  +K    ++RT DS L++  A    R++ DE  L H G + A 
Sbjct: 733  ANKKSALDVRQALFNSTDSKEATTFVRTADSVLLN-DASDVSRVLIDEVVLLHFGQLCAV 791

Query: 176  ATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKVERKLITWRSPAD--------A 328
                     I FGD+EQI F SR+ SF  R+ K L  +V     T+RSP D        A
Sbjct: 792  MAKLKAVRAICFGDSEQIAFNSRDASFDMRNSKLLPDEVSSADTTFRSPQDVVPIVKLMA 851

Query: 329  TYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTH 508
            T  L K  +       + S+V RS+    + S   V+ + +  Y+  TQA+KA L ++  
Sbjct: 852  TKALPKGTHTKYTRWVSQSKVQRSVSTRSVASVTMVDLSEDRFYITMTQADKAALISRAK 911

Query: 509  LKGC------DNIFTTHEAQGKTFDNV 571
                      +NI TTHE+QG + D+V
Sbjct: 912  ELNMSKRFVENNIKTTHESQGISEDHV 938

[212][TOP]
>UniRef100_B2C4F9 Methyl transferase/helicase n=1 Tax=Grapevine leafroll-associated
            virus 3 RepID=B2C4F9_9CLOS
          Length = 2237

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
 Frame = +2

Query: 119  QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298
            +R++ DE ++ H GL+       G SE + FGD  QIPF++R   F         K E  
Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063

Query: 299  LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448
            + T   +R P D  Y L        +  Y  K     +  V+RS+   PI +   V    
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123

Query: 449  NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571
              +YLC TQ EK+ +K     KG +  + T HEAQGKTF +V
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDV 2165

[213][TOP]
>UniRef100_Q88920 Replicase small subunit n=1 Tax=Turnip vein-clearing virus
            RepID=RDRP_TVCV
          Length = 1601

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 6/171 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM  S    +RL  DE  + H G V     L+ C     +GDT+QIPF+ R  
Sbjct: 876  VRTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPFICRVA 935

Query: 251  SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H    +  + E + +T R PAD TY L K   K    V   S V RS++   + 
Sbjct: 936  NFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVR 992

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
               ++   T  L    L  TQA+K  L      KG  ++ T HE QG+T++
Sbjct: 993  GKGALNPITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYE 1039

[214][TOP]
>UniRef100_Q65715 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65715_BSMV
          Length = 1138

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 70/211 (33%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
 Frame = +2

Query: 8    RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
            R++ D+L+E      + +  T  H +RT DS L++      +A R  FDE    H G + 
Sbjct: 863  RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 922

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337
              A   G SE++  GD  Q+P + R       F+    T   +  KL ++R P D A Y 
Sbjct: 923  FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 982

Query: 338  LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
              K FYK K   + V T++ V RS+      +P        V V +NT+  YL   QAEK
Sbjct: 983  SAKEFYKVKGIPQKVTTSNSVKRSLYARGETTPERFVSLLDVPVRKNTH--YLTFLQAEK 1040

Query: 485  AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
              L +    KG   ++I T HEAQG T++NV
Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071

[215][TOP]
>UniRef100_Q3YFN1 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
            RepID=Q3YFN1_9VIRU
          Length = 1617

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM        +L  DE  + H G V     L+ C E + FGDTEQIPF++R  
Sbjct: 875  VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934

Query: 251  SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H  T      E + ++ R PAD T+ +     K    V   + V+RS++   + 
Sbjct: 935  NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571
                    +  L    +  TQ++KA LK + +  +     I T HE QG+TF++V
Sbjct: 992  GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046

[216][TOP]
>UniRef100_A1YLW4 Replicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1
           RepID=A1YLW4_9CLOS
          Length = 381

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
 Frame = +2

Query: 128 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 298
           + DE ++ H G+        G  EVI +GD  QIPF++R  +FV  +  +      +E  
Sbjct: 146 LIDEVYMLHKGMFQLTVAAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYT 205

Query: 299 LITWRSPADATYCLEKY-------FYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 457
            I++R PAD  Y L           Y N      ++R LRS E VPI +P         +
Sbjct: 206 DISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADV 265

Query: 458 YLCHTQAEKAVLK---AQTHL---KGCDNIFTTHEAQGKTFDNV 571
           YL  TQ EKA ++   A+  +   K   ++ TTHEAQGKT+ +V
Sbjct: 266 YLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDV 309

[217][TOP]
>UniRef100_P89659 Replicase small subunit n=3 Tax=Odontoglossum ringspot virus
            RepID=RDRP_ORSVC
          Length = 1612

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 8/175 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM        +L  DE  + H G V     L+ C E + FGDTEQIPF++R  
Sbjct: 875  VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934

Query: 251  SFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H  T      E + ++ R PAD T+ +     K    V   + V+RS++   + 
Sbjct: 935  NFPYPKHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571
                    +  L    +  TQ++KA LK + +  +     I T HE QG+TF++V
Sbjct: 992  GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046

[218][TOP]
>UniRef100_O71188 P_protease/methyl transferase/helicase (Fragment) n=2 Tax=Grapevine
            leafroll-associated virus 3 RepID=O71188_9CLOS
          Length = 2233

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 54/162 (33%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
 Frame = +2

Query: 119  QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 298
            +R++ DE  + H GL+       G SE + FGD  QIPF++R   F         K E  
Sbjct: 2004 KRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063

Query: 299  LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 448
            + T   +R P D  Y L        +  Y  K     +  V+RS+   PI +   V    
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123

Query: 449  NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNV 571
              +YLC TQ EK+ +K     KG +  + T HEAQGKTF +V
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDV 2165

[219][TOP]
>UniRef100_A0ZXL9 Polyprotein (Fragment) n=1 Tax=Fig leaf mottle-associated virus 1
           RepID=A0ZXL9_9CLOS
          Length = 274

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
 Frame = +2

Query: 74  RTCDSYLMSASAV-KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
           RT DS  ++A  V  A+ ++ DECFL H GL+     L+G  +V  +GD +QIPF++R  
Sbjct: 30  RTIDSLAINALRVGHAKVVLIDECFLVHFGLLKVVIALSGAHQVFLYGDRQQIPFINRVQ 89

Query: 251 SFVFRHHKLTGK---VERKLITWRSPADATYCLEKYFYKNKR-------PVKTN--SRVL 394
           +F   + ++ GK   + +K +++R P D   C      K++R        VK    +R  
Sbjct: 90  TFKCNNSEIDGKRMQIIKKNVSYRCPGD--ICKRLSEMKDERGNLCYPQGVKKGNPNRPD 147

Query: 395 RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDN 568
           RSIE+  I S   V+   + + L  TQ EK  +  +   +   N + T HEAQGK   N
Sbjct: 148 RSIEMFKITSEADVDVRPDDIVLTFTQDEKKKMAEELRKRRLKNMVKTVHEAQGKEAGN 206

[220][TOP]
>UniRef100_A0PA51 Replicase large subunit n=2 Tax=Cucumber mottle virus
            RepID=A0PA51_9VIRU
          Length = 1672

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
 Frame = +2

Query: 50   PLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQI 229
            P+     +RT DS++M+    K   L  DE  + H GL+  +  +AG  +V  FGD +QI
Sbjct: 928  PVATHDNVRTFDSFIMNKKPYKFTTLWVDEGLMVHTGLLNFSINIAGVKKVFVFGDRKQI 987

Query: 230  PFVSRNPSF---VFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRS 400
            PF++R  +F   V     +   VER+ +T R P D T  L + +      V T S V  S
Sbjct: 988  PFINRVMNFDYPVELSKLIVDNVERRDVTKRCPVDVTKFLNEVY---PNAVSTTSDVFYS 1044

Query: 401  IEVVPINSPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
            +    +  P  +     A     +  TQ++K  L+      G  ++ T HE QG+TFD V
Sbjct: 1045 LNAKRVAGPGLLRPELTAFKGKIVTFTQSDKFTLEK----AGYTDVNTVHEIQGETFDEV 1100

[221][TOP]
>UniRef100_Q84133 Replicase small subunit n=2 Tax=Odontoglossum ringspot virus
            RepID=RDRP_ORSVS
          Length = 1612

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM        +L  DE  + H G V     L+ C E + FGD EQIPF++R  
Sbjct: 875  VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFINRVA 934

Query: 251  SFVF-RHHKLTGKVERKL--ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F + +H + T    R++  ++ R PAD T+ +     K    V   + V+RS++   + 
Sbjct: 935  NFPYPKHFRYTCLYHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNV 571
                    +  L    +  TQ++KA LK + +  +     I T HE QG+TF++V
Sbjct: 992  GKGVFNPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDV 1046

[222][TOP]
>UniRef100_Q9Q703 P348 n=1 Tax=Beet yellows virus RepID=Q9Q703_9CLOS
          Length = 3090

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 22/212 (10%)
 Frame = +2

Query: 2    SNRSSADELKETIDC-------SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAG 160
            +N+SS +E+   ++        +PL     I T DSYLM+   +  + L  DECF+ HAG
Sbjct: 2277 ANKSSREEILAKVNRIVLDEGDTPLQTRDRILTIDSYLMNNRGLTCKVLYLDECFMVHAG 2336

Query: 161  LVYAAATLAGCSEVIGFGDTEQIPFVSRNP----------SFVFRHHKLTGKVERKLITW 310
               A      C   I FGD+ QI ++ RN            FV    ++ G+V     ++
Sbjct: 2337 AAVACIEFTKCDSAILFGDSRQIHYIDRNELDTAVLSDLNRFVDDESRVYGEV-----SY 2391

Query: 311  RSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAV 490
            R P D    L  ++ K        S    S++V  I S   VE ++  +YL   Q+EK  
Sbjct: 2392 RCPWDVCAWLSTFYPKTVATTNLVSAGQSSMQVREIESVDDVEYSSEFVYLTMLQSEKKD 2451

Query: 491  L-----KAQTHLKGCDNIFTTHEAQGKTFDNV 571
            L     K          + T HEAQG+T+  V
Sbjct: 2452 LLKSFGKRSRSSVEKPTVLTVHEAQGETYRKV 2483

[223][TOP]
>UniRef100_Q6JGW4 ORF 1a/1b fusion polyprotein n=2 Tax=Strawberry pallidosis-associated
            virus RepID=Q6JGW4_9CLOS
          Length = 2451

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
 Frame = +2

Query: 68   YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247
            Y+ T DSYLM     K Q++  DE F+ HAG   A   L     V  +GD  QIPF++R 
Sbjct: 1699 YVTTYDSYLMKNKKNKIQKVYCDEVFMVHAGEWIACMNLIENDYVRCYGDKNQIPFINRV 1758

Query: 248  PSFVFR---HHKLTGKVERKLITWRSPADATYCL--------EKYFYKNKRPVKTNSRVL 394
            P+          L  ++    +++R P D  Y L         K +     P   NS++L
Sbjct: 1759 PNTTCHLSFDLYLKFQMIHDNVSYRCPVDVCYLLSNLTDPIGNKLYPNGVYPAGDNSKIL 1818

Query: 395  RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQT--HLKGCDNIFTTHEAQGKTFDN 568
            RS++VV IN    ++ +    Y+  TQ EK  +   T   +K      T +E QG TF  
Sbjct: 1819 RSVDVVGINCAEDLKPDEKKKYITFTQYEKEEVSKITGKKMKVSGTANTVNEVQGGTFPK 1878

Query: 569  V 571
            V
Sbjct: 1879 V 1879

[224][TOP]
>UniRef100_Q2A077 Methyltransferase/helicase protein (Fragment) n=1 Tax=Grapevine
            leafroll associated virus 9 RepID=Q2A077_9VIRU
          Length = 2045

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 26/216 (12%)
 Frame = +2

Query: 2    SNRSSADELKETIDCSPLTKLHYIRTCDSYLMSA---SAVKAQRLIFDECFLQHAGLVYA 172
            S+R++A+ L E  D     K   + T DS++ S    S+   + ++ DEC++ HAGL   
Sbjct: 1768 SSRNAAESLNEFWDSEICNKKVVVMTVDSFVFSGGRFSSKNVETVLIDECYMSHAGLCIL 1827

Query: 173  AATLAGCSEVIGFGDTEQIPFVSRNPSF--VFRHHKLTGKV-ERKLITWRSPADATYCLE 343
             A     S +  +GD  Q+PF++RNP F       K  G +   KL+++R PAD  Y + 
Sbjct: 1828 IAAATNPSSLSFYGDRRQVPFINRNPIFRDTMGMLKTAGNLYTEKLLSFRCPADICYWMS 1887

Query: 344  KY--------FYKNKRPVKTNSRVLRSIEVVP-----INSPVSVERNTNALYLCHTQAEK 484
                       Y  K     +SR L+S+ ++P     +N    V+R      +  TQ EK
Sbjct: 1888 TVDYLKPGGRLYSGKVTTVKDSRPLKSVSIMPFSPDQLNFMKKVDR-----VMTFTQMEK 1942

Query: 485  AVLKAQTHLKGCDN-------IFTTHEAQGKTFDNV 571
            A + ++    G  +       I T  E+QG+T+  V
Sbjct: 1943 ADMISKFLSAGFGDREEANQLIGTVAESQGETYARV 1978

[225][TOP]
>UniRef100_Q0E5F1 Replicase large subunit n=2 Tax=Brugmansia mild mottle virus
            RepID=Q0E5F1_9VIRU
          Length = 1612

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 52/176 (29%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAV---KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
            ++T DS+LM+       + + L  DE  + H G V    +L  C     FGDT+QIP+++
Sbjct: 881  VKTVDSFLMNLGKKPLGRVENLFIDEGLMLHPGCVNFLVSLTMCDRAFVFGDTQQIPYIN 940

Query: 242  RNPSFVFRHHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE-- 406
            R  +F +  H  T    +VE + +T R PAD T+ L + +      V  +S V +S+   
Sbjct: 941  RVQNFPYPKHFATLEVDEVETRRVTMRCPADVTHFLNERY---SGTVMCSSGVQKSVSSE 997

Query: 407  -VVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
             +V   S   + +      L  TQ++K  L      +G +++ T HE QG+T+++V
Sbjct: 998  ILVGAGSVNPITKPLKGKILTFTQSDKFALTE----RGYEDVNTVHEVQGETYEDV 1049

[226][TOP]
>UniRef100_O89906 Fusion protein n=1 Tax=Beet yellows virus RepID=O89906_9CLOS
          Length = 3070

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 62/212 (29%), Positives = 92/212 (43%), Gaps = 22/212 (10%)
 Frame = +2

Query: 2    SNRSSADELKETIDC-------SPLTKLHYIRTCDSYLMSASAVKAQRLIFDECFLQHAG 160
            +N+SS +E+   ++        +PL     I T DSYLM+   +  + L  DECF+ HAG
Sbjct: 2277 ANKSSREEILAKVNRIVLDEGDTPLQTRDRILTIDSYLMNNRGLTCKVLYLDECFMVHAG 2336

Query: 161  LVYAAATLAGCSEVIGFGDTEQIPFVSRNP----------SFVFRHHKLTGKVERKLITW 310
               A      C   I FGD+ QI ++ RN            FV    ++ G+V     ++
Sbjct: 2337 AAVACIEFTKCDSAILFGDSRQIHYIDRNELDTAVLSDLNRFVDDESRVYGEV-----SY 2391

Query: 311  RSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQAEKAV 490
            R P D    L  ++ K        S    S++V  I S   VE ++  +YL   Q+EK  
Sbjct: 2392 RCPWDVCAWLSTFYPKTVATTNLVSAGQSSMQVREIESVDDVEYSSEFVYLTMLQSEKKD 2451

Query: 491  L-----KAQTHLKGCDNIFTTHEAQGKTFDNV 571
            L     K          + T HEAQG+T+  V
Sbjct: 2452 LLKSFGKRSRSSVEKPTVLTVHEAQGETYRKV 2483

[227][TOP]
>UniRef100_A3FG29 Replicase large subunit n=2 Tax=Rehmannia mosaic virus
            RepID=A3FG29_9VIRU
          Length = 1616

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
 Frame = +2

Query: 71   IRTCDSYLMSASAV---KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
            +RT DS++M+   V   + +RL  DE  + H G V    +++ C     +GDT+QIP+++
Sbjct: 882  VRTVDSFMMNYGKVARCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYVYGDTQQIPYIN 941

Query: 242  RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
            R   F +  H  KL   +VE +  T R PAD T+ L K +   +  V + S V RS+   
Sbjct: 942  RVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKRSVSQE 998

Query: 413  PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
             ++   ++   +  L+   L  TQ++K  L +    +G  ++ T HE QG+T+ +V
Sbjct: 999  MVSGAATINPISKPLHGKVLTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDV 1050

[228][TOP]
>UniRef100_Q88604 Replicase large subunit n=2 Tax=Tobacco mosaic virus
            RepID=Q88604_9VIRU
          Length = 1601

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            + T DS+LM  S    +RL  DE  + H G V     L+ C     +GDT+QIPF+ R  
Sbjct: 876  VSTVDSFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPFICRVA 935

Query: 251  SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H    +  + E + +T R PAD TY L K   K    V   S V RS++   + 
Sbjct: 936  NFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVR 992

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
               ++   T  L    L  TQA+K  L      KG  ++ T HE QG+T++
Sbjct: 993  GKGALNPITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYE 1039

[229][TOP]
>UniRef100_Q65716 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65716_BSMV
          Length = 1138

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 70/211 (33%), Positives = 100/211 (47%), Gaps = 23/211 (10%)
 Frame = +2

Query: 8    RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
            R++ D+L+E      + +  T  H +RT DS L++      +A R  FDE    H G + 
Sbjct: 863  RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 922

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337
              A   G SE++  GD  Q+P + R       F+    T   +  KL ++R P D A Y 
Sbjct: 923  FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 982

Query: 338  LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
              K FYK K   + V T + V RS+      +P        V V +NT+  YL   QAEK
Sbjct: 983  SAKEFYKVKGIPQKVTTFNSVKRSLYARGETTPERFVSLLDVPVRKNTH--YLTFLQAEK 1040

Query: 485  AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
              L +    KG   ++I T HEAQG T++NV
Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071

[230][TOP]
>UniRef100_A0PA59 Replicase large subunit n=2 Tax=Youcai mosaic virus
            RepID=A0PA59_9VIRU
          Length = 1596

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM     + +RL  DE  + H G V     L+ C     +GDT+QIPF+ R  
Sbjct: 872  VRTVDSFLMHPPKREFKRLFIDEGLMLHTGCVNFLTLLSHCEVAYVYGDTQQIPFICRVA 931

Query: 251  SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H    +  + E + +T R PAD T+ L K   K    V   S V RS+    + 
Sbjct: 932  NFPYPKHFAKLVVDEKEDRRVTLRCPADVTFFLNK---KYDGAVLCTSSVERSVSAEVVR 988

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
               ++   T  L    L  TQA+K  L      KG  ++ T HE QG+T++
Sbjct: 989  GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035

[231][TOP]
>UniRef100_B2LS13 Replicase large subunit n=2 Tax=Chinese Rape Mosaic Virus
            RepID=B2LS13_YOMV
          Length = 1596

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM       +RL  DE  + H G V     L+ C     +GDT+QIPF+ R  
Sbjct: 871  VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 930

Query: 251  SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H    +  + E + IT R PAD TY L +   K    V   S V RS+    + 
Sbjct: 931  NFPYPSHFAKLVVDEKEDRRITLRCPADVTYFLNQ---KYDGAVMCTSSVERSVSAEVVR 987

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
               ++   T  L    L  TQA+K  L      KG  ++ T HE QG+T++
Sbjct: 988  GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1034

[232][TOP]
>UniRef100_Q65714 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65714_BSMV
          Length = 1139

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
 Frame = +2

Query: 8    RSSADELKETID----CSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
            R++ D+L+E        +  T  H +RT DS L++  +   +A R  FDE    H G + 
Sbjct: 864  RNATDDLRERFKRKKHLNSKTANHRVRTLDSLLLAEGSCVPQADRFHFDEALKVHYGAIM 923

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337
              A   G SE++  GD  Q+P + R       F+    T   +  KL ++R P D A Y 
Sbjct: 924  FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 983

Query: 338  LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
              K FYK K   + V T++ V RS+      +P        V V ++T+  YL   QAEK
Sbjct: 984  SAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKDTH--YLTFLQAEK 1041

Query: 485  AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
              L +    KG   ++I T HEAQG T++NV
Sbjct: 1042 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1072

[233][TOP]
>UniRef100_P17595 Alpha-A protein n=1 Tax=Barley stripe mosaic virus RepID=VRNA_BSMV
          Length = 1139

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 69/211 (32%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
 Frame = +2

Query: 8    RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
            R++ D+L+E      + +  T  H +RT DS L++      +A R  FDE    H G + 
Sbjct: 864  RNATDDLRERFKRKKNLNSKTANHRVRTLDSLLLAEGPCVPQADRFHFDEALKVHYGAIM 923

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK-VERKLITWRSPAD-ATYC 337
              A   G SE++  GD  Q+P + R       F+    T   +  KL ++R P D A Y 
Sbjct: 924  FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKTIINPKLRSYRIPGDVAFYL 983

Query: 338  LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
              K FYK K   + V T++ V RS+      +P        V V ++T+  YL   QAEK
Sbjct: 984  SAKEFYKVKGIPQKVITSNSVKRSLYARGETTPERFVSLLDVPVRKDTH--YLTFLQAEK 1041

Query: 485  AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
              L +    KG   ++I T HEAQG T++NV
Sbjct: 1042 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1072

[234][TOP]
>UniRef100_Q84687 Orf1 protein n=2 Tax=Peanut clump virus RepID=Q84687_9VIRU
          Length = 1145

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT  S+++   + +     FDE  + HAG++Y    +    EVI  GD++QIPF++R  
Sbjct: 906  VRTVHSFMLKPLSRRFNSFHFDEALMAHAGMIYICGRMLNAREVICQGDSKQIPFINRVE 965

Query: 251  SFVFRHHKLTGKVERKLI--TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP--- 415
                ++      VER+ +  T+R P D  Y L K  Y     +   S+   S++      
Sbjct: 966  QISLKYSSF-NVVEREHVRKTYRCPLDIVYYLNKKKYYRGDDIVGYSKTTHSVDTKSKSS 1024

Query: 416  -INSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
               S V + +     YL   QAEK  V K    +KG   + T HEAQGKTF+ V
Sbjct: 1025 GFTSLVKLPKEP-VHYLTFLQAEKEEVSKHLAGVKGA-TVSTVHEAQGKTFERV 1076

[235][TOP]
>UniRef100_Q85077 Alpha-A protein; N-terminal region (Fragment) n=1 Tax=Poa
           semilatent virus RepID=Q85077_9VIRU
          Length = 478

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 19/207 (9%)
 Frame = +2

Query: 8   RSSADELKETIDCSPLTK----LHYIRTCDSYLMSA--SAVKAQRLIFDECFLQHAGLVY 169
           R++ D+L+       L      L  +RT DS L++   +  K Q+  FDE    H G + 
Sbjct: 204 RNAMDDLRNKFQKKKLVSKKLSLSRVRTMDSLLLADKDNVPKCQKFHFDEALKVHYGAIL 263

Query: 170 AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPADATYCL 340
             A   G +E+I  GD  Q+P + R       + +       +  KL+++R P D  + L
Sbjct: 264 FCADRLGATEIIAQGDRAQLPMICRVEGIDLHYTRPDFSRIVISPKLLSYRIPGDVAFYL 323

Query: 341 EKYFYKN--KRPVKTNSRVLRSI----EVVP--INSPVSVERNTNALYLCHTQAEKAVLK 496
               Y N   + + T ++V RS+    E  P    S + V    +  YLC  QAEK  L 
Sbjct: 324 SARGYYNGVAQTITTKNKVERSMFARGETTPERFISLLDVPVRRDVQYLCFMQAEKESLI 383

Query: 497 AQTHLKGC--DNIFTTHEAQGKTFDNV 571
           A    KG   ++I T HE+QG TFD+V
Sbjct: 384 AYLVPKGVKKESIATIHESQGGTFDHV 410

[236][TOP]
>UniRef100_Q84125 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
            RepID=Q84125_9VIRU
          Length = 1596

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 8/175 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM        +L  DE  + H G V     L+ C E + FGDTEQIPF++R  
Sbjct: 875  VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934

Query: 251  SFVF-RH--HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F + +H  H    + E + ++ R PAD T+ +   +  + + + TN  V+RS++   + 
Sbjct: 935  NFPYPKHFGHTCLHRREVRRLSLRCPADVTHFMNSKY--DGKFLCTND-VIRSVDAEVVR 991

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNV 571
                    +  L    +  TQ++KA L  +    +     I T HE QG+TF++V
Sbjct: 992  GKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDV 1046

[237][TOP]
>UniRef100_O10447 Replicase large subunit n=1 Tax=Odontoglossum ringspot virus
            RepID=O10447_9VIRU
          Length = 1612

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM        +L  DE  + H G V     L+ C E + FGDTEQIPF++R  
Sbjct: 875  VRTVDSFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVA 934

Query: 251  SFVF-RH--HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F + +H  H      E + ++ R PAD T+ +     K    V   + V+RS++   + 
Sbjct: 935  NFPYPKHFGHTCLHHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVR 991

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNV 571
                    +  L    +  TQ++KA L  +    +     I T HE QG+TF++V
Sbjct: 992  GKGVFNPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDV 1046

[238][TOP]
>UniRef100_A0MBW3 Polyprotein 1a n=1 Tax=Raspberry leaf mottle virus RepID=A0MBW3_9CLOS
          Length = 2819

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 12/177 (6%)
 Frame = +2

Query: 77   TCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 256
            T DSYLM  +  K+  ++ DECF+ HAG V A  T  G S  + +GD+ QI ++ RN   
Sbjct: 2496 TVDSYLMHHAYTKSHVVLIDECFMVHAGAVCAVLTFTGASLAVLYGDSRQIHYIHRNDLG 2555

Query: 257  VFRHHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +   H +   +         +++R P D    L + +    + +   S    S+ V  I+
Sbjct: 2556 LSLLHDINNFLSDDSRVYGNVSYRCPWDVCAWLSEIYPTRIQSMNEKSAGTSSMSVTEIS 2615

Query: 422  SPVSVERNTNALYLCHTQAEK-------AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
                V  +    Y+ +TQ EK       AV    ++ K    + T HE QG TF +V
Sbjct: 2616 CVEDVPLDQKFKYITYTQGEKRDLSKHLAVRATASNCKKVPEVNTVHEVQGDTFAHV 2672

[239][TOP]
>UniRef100_Q8V9A6 Replicase large subunit n=2 Tax=Crucifer tobamovirus
            RepID=Q8V9A6_9VIRU
          Length = 1597

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 56/171 (32%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM       +RL  DE  + H G V     ++ C     +GDT+QIPF+ R  
Sbjct: 872  VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVA 931

Query: 251  SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H    +  + E + IT R PAD T+ L K   K    V   S V RS+    + 
Sbjct: 932  NFPYPKHFARLVVDEKEDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVR 988

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
               ++   T  L    L  TQA+K  L      KG  ++ T HE QG+T++
Sbjct: 989  GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035

[240][TOP]
>UniRef100_Q70PI7 Polyprotein n=2 Tax=Potato yellow vein virus RepID=Q70PI7_9CLOS
          Length = 2475

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
 Frame = +2

Query: 68   YIRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN 247
            Y+RT D+ L+    +K   L  DECF+ H+G   A   +     +  +GD  QIP+++R 
Sbjct: 1723 YVRTYDAVLIKVGRMKLGVLYCDECFMIHSGQFVAVTEIITADRMELYGDKNQIPYLNRV 1782

Query: 248  P---SFVFRHHKLTGKVERKLITWRSPADATYCL--------EKYFYKNKRPVKTNSRVL 394
            P   S    +H L   +     ++R P D  Y L        E  + K  + V  N+ +L
Sbjct: 1783 PNTTSLYSFNHFLQYDMVHDDKSYRCPPDVCYILSNLRNSSGELLYPKGVKSVNKNANIL 1842

Query: 395  RSIEVVPINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGCDNIFTTHEAQGKTFDN 568
            RS+EV+  +S   ++      Y+  TQ EK  +      + K  D   T +E QG TF  
Sbjct: 1843 RSMEVLKFDSVNDLDGEAGRKYVTFTQPEKEEISRIVSRNKKESDTANTVNEVQGGTFKT 1902

Query: 569  V 571
            V
Sbjct: 1903 V 1903

[241][TOP]
>UniRef100_Q91PA8 Replicase large subunit n=2 Tax=Ribgrass mosaic virus
            RepID=Q91PA8_RMV
          Length = 1597

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM       +RL  DE  + H G V     L+ C     +GDT+QIPF+ R  
Sbjct: 872  VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 931

Query: 251  SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H    +  + E + +T R PAD TY L   +      V   S V RS+    + 
Sbjct: 932  NFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVR 988

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
               ++   T  L    L  TQA+K  L      KG  ++ T HE QG+T++
Sbjct: 989  GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035

[242][TOP]
>UniRef100_Q7TD02 Replicase large subunit n=2 Tax=Crucifer tobamovirus
            RepID=Q7TD02_9VIRU
          Length = 1597

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS+LM       +RL  DE  + H G V     L+ C     +GDT+QIPF+ R  
Sbjct: 872  VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVA 931

Query: 251  SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H    +  + E + +T R PAD TY L   +      V   S V RS+    + 
Sbjct: 932  NFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVR 988

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
               ++   T  L    L  TQA+K  L      KG  ++ T HE QG+T++
Sbjct: 989  GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035

[243][TOP]
>UniRef100_Q65853 Helicase (Fragment) n=1 Tax=Beet yellow stunt virus
           RepID=Q65853_9CLOS
          Length = 710

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 6/173 (3%)
 Frame = +2

Query: 71  IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
           + T DSYLM+    K   L  DECF+ HAG V A +       V   GD+ QI  + RN 
Sbjct: 391 VYTIDSYLMNHLGTKCDVLFVDECFMVHAGAVTAVSNTLVPRSVFFVGDSRQIHHIERNE 450

Query: 251 SFVFRHHKLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 415
             V     L   V  K      +++R P D    L K++          S    S+ +  
Sbjct: 451 YDVASFSDLDRLVAAKDRIYGQVSYRCPWDVCGWLSKHYPNTVATTNVESEGKSSLTITE 510

Query: 416 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNV 571
           INS   V  +    YL   Q+EK  L+     KG    + T HEAQG T+ +V
Sbjct: 511 INSVDDVVASKRNTYLTFLQSEKKELEKHLAKKGVKATVKTVHEAQGDTYRDV 563

[244][TOP]
>UniRef100_A3RF53 Replicase large subunit n=2 Tax=Tobacco mosaic virus
            RepID=A3RF53_9VIRU
          Length = 1616

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
 Frame = +2

Query: 71   IRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
            +RT DS++M+    +  + +RL  DE  + H G V    +++ C     +GDT+QIP+++
Sbjct: 882  VRTVDSFMMNYGKGTRCQFKRLFIDEGLMLHTGCVNFLVSMSLCDIAYVYGDTQQIPYIN 941

Query: 242  RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
            R   F +  H  K+   +VE +  T R PAD T+ L K +   +  V + S V +S+   
Sbjct: 942  RVSGFPYPAHFSKIEVDEVETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKKSVSQE 998

Query: 413  PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
             ++   ++   +  L+   L  TQ++K  L +    +G   + T HE QG+T+ +V
Sbjct: 999  MVSGAATINPVSKPLHGKILTFTQSDKEALLS----RGYSEVHTVHEVQGETYSDV 1050

[245][TOP]
>UniRef100_Q8V9A2 Replicase large subunit n=2 Tax=Crucifer tobamovirus
            RepID=Q8V9A2_9VIRU
          Length = 1597

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 55/171 (32%), Positives = 81/171 (47%), Gaps = 6/171 (3%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            ++T DS+LM       +RL  DE  + H G V     ++ C     +GDT+QIPF+ R  
Sbjct: 872  VKTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVA 931

Query: 251  SFVFRHH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +  H    +  + E + IT R PAD T+ L K   K    V   S V RS+    + 
Sbjct: 932  NFPYPKHFARLVVDEKEDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVR 988

Query: 422  SPVSVERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFD 565
               ++   T  L    L  TQA+K  L      KG  ++ T HE QG+T++
Sbjct: 989  GKGALNPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYE 1035

[246][TOP]
>UniRef100_Q82718 Methyltransferase n=2 Tax=Indian peanut clump virus
            RepID=Q82718_9VIRU
          Length = 1130

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT  S+++           FDE  + HAG++Y    +    EVI  GD++QIPF++R  
Sbjct: 891  VRTVHSFMLKPLTRGFNSFHFDEALMAHAGMIYICGRMLRAREVICQGDSKQIPFINRVE 950

Query: 251  SFVFRHHKLTGKVERKLI--TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP--- 415
                R+      VER+ +  T+R P D  Y L K  Y     +   S+   S++      
Sbjct: 951  QITLRYASF-NVVEREYVRKTYRCPLDVIYYLNKKRYYQGDDIVGFSKTTHSVDTKSKTS 1009

Query: 416  -INSPVSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
               S V + +     YL   QAEK  V K    +KG   + T HEAQGKTF+ V
Sbjct: 1010 GFTSLVKLPKEP-VHYLTFLQAEKEEVAKHLAGVKGA-TVSTIHEAQGKTFECV 1061

[247][TOP]
>UniRef100_Q65713 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65713_BSMV
          Length = 1138

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 67/211 (31%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
 Frame = +2

Query: 8    RSSADELKETI----DCSPLTKLHYIRTCDSYLMSASAV--KAQRLIFDECFLQHAGLVY 169
            R++ D+L+E      + +     H +RT DS L++      +A RL FDE    H G + 
Sbjct: 863  RNATDDLRERFKRKKNLNSKIANHRVRTLDSLLLAEGPCVPQADRLHFDEALKVHYGAIM 922

Query: 170  AAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VERKLITWRSPAD-ATYC 337
              A   G SE++  GD  Q+P + R      +          +  KL ++R P D A Y 
Sbjct: 923  FCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYSKTIINPKLRSYRIPGDVAFYL 982

Query: 338  LEKYFYKNK---RPVKTNSRVLRSIEVVPINSP--------VSVERNTNALYLCHTQAEK 484
              K FYK K   + V T + V RS+      +P        V V ++T+  YL   QAEK
Sbjct: 983  SAKEFYKVKGIPQKVTTFNSVKRSMYARGETTPDRFVSLLDVPVRKDTH--YLTFLQAEK 1040

Query: 485  AVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
              L +    KG   ++I T HEAQG T++NV
Sbjct: 1041 ESLMSHLIPKGVKKESISTIHEAQGGTYENV 1071

[248][TOP]
>UniRef100_B2BZW0 ORF1a n=2 Tax=Bean yellow disorder virus RepID=B2BZW0_9CLOS
          Length = 2021

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            + T DS LM+A      R+  DE F+ HAG   A  +L   + +  +GD  QIP+++R  
Sbjct: 1775 VYTYDSVLMTAIGANVDRVYCDEVFMVHAGEWAAVMSLFNTNYIRCYGDRNQIPYINRVA 1834

Query: 251  SFVFRHHK---LTGKVERKLITWRSPADATYCLEK--------YFYKNKRPVKTNSRVLR 397
              + R  K   L+ K     I++R P D  Y L           + +   P   N  V+R
Sbjct: 1835 HTICRFSKDLYLSFKTIDDNISYRCPVDVCYLLSTLKDEAGNLLYPRGVFPAGDNRNVMR 1894

Query: 398  SIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNV 571
            S+++ PI+S   +  +     +  T+ E+  + A     G    ++ T HE QG TF  V
Sbjct: 1895 SMDIEPISSVYDIHHDITGKCISFTRPERDEVDASMQRAGIIGQSVQTVHEVQGGTFPRV 1954

Query: 572  Y 574
            +
Sbjct: 1955 F 1955

[249][TOP]
>UniRef100_P30738 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain Korean)
            RepID=RDRP_TMVKR
          Length = 1616

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 9/176 (5%)
 Frame = +2

Query: 71   IRTCDSYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVS 241
            ++T DS++M+   ++  + +RL  DE  + H G V    T++ C     +GDT+QIP+++
Sbjct: 882  VKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVTMSLCEIAYVYGDTQQIPYIN 941

Query: 242  RNPSFVFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV 412
            R   F +  H  KL   +VE +  T R PAD T+ L + +   +  V + S V +S+   
Sbjct: 942  RVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQE 998

Query: 413  PINSPVSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNV 571
             +     +   +  L+   L  TQ++K  L +    +G  ++ T HE QG+T+ +V
Sbjct: 999  MVGGAAVINPISKPLHGKILTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDV 1050

[250][TOP]
>UniRef100_Q911R4 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus
            RepID=Q911R4_9VIRU
          Length = 1670

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
 Frame = +2

Query: 71   IRTCDSYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNP 250
            +RT DS++M+      + L  DE  + H GL+     ++  SEV  FGDT+QIPF++R  
Sbjct: 935  VRTFDSFVMNLKPYNFKTLWVDEGLMVHTGLLNFCVNISKVSEVKIFGDTKQIPFINRVM 994

Query: 251  SFVF---RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPIN 421
            +F +       +   VE++  + R P D T+ L + +     PV T+S V+ S+    I 
Sbjct: 995  NFDYPLELKKIIVDNVEKRYTSKRCPRDVTHYLNEVY---AAPVTTSSAVVHSVSQKKI- 1050

Query: 422  SPVSVER----NTNALYLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDN 568
            + V + R    N     +  TQ++K     QT LK G  ++ T HE QG+T+++
Sbjct: 1051 AGVGLLRPELTNLEGKIITFTQSDK-----QTLLKAGYQDVNTVHEVQGETYES 1099