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[1][TOP]
>UniRef100_UPI0001B52D2C putative DNA-binding response regulator in two-component system n=1
Tax=Shigella sp. D9 RepID=UPI0001B52D2C
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[2][TOP]
>UniRef100_Q32D18 Putative 2-component transcriptional regulator n=1 Tax=Shigella
dysenteriae Sd197 RepID=Q32D18_SHIDS
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[3][TOP]
>UniRef100_Q1R8I1 Putative uncharacterized protein yfhA n=1 Tax=Escherichia coli
UTI89 RepID=Q1R8I1_ECOUT
Length = 457
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 60 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 119
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 120 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 179
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 180 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 209
[4][TOP]
>UniRef100_Q0T1W6 Putative 2-component transcriptional regulator n=2 Tax=Shigella
flexneri RepID=Q0T1W6_SHIF8
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[5][TOP]
>UniRef100_B7NRK6 Putative DNA-binding response regulator in two-component system n=1
Tax=Escherichia coli IAI39 RepID=B7NRK6_ECO7I
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[6][TOP]
>UniRef100_C2DVC5 Sigma-54 dependent response regulator n=5 Tax=Escherichia
RepID=C2DVC5_ECOLX
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[7][TOP]
>UniRef100_B3WYI1 Sigma-54 dependent response regulator n=1 Tax=Shigella dysenteriae
1012 RepID=B3WYI1_SHIDY
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[8][TOP]
>UniRef100_C8TVP9 Predicted DNA-binding response regulator in two-component system
n=13 Tax=Escherichia coli RepID=C8TVP9_ECOLX
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[9][TOP]
>UniRef100_B3HTN2 Sigma-54 dependent response regulator n=2 Tax=Escherichia coli
RepID=B3HTN2_ECOLX
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[10][TOP]
>UniRef100_B3HG63 Sigma-54 dependent response regulator n=1 Tax=Escherichia coli B7A
RepID=B3HG63_ECOLX
Length = 459
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[11][TOP]
>UniRef100_P0AFU5 Uncharacterized protein yfhA n=27 Tax=Enterobacteriaceae
RepID=YFHA_ECO57
Length = 444
Score = 292 bits (747), Expect = 9e-78
Identities = 150/150 (100%), Positives = 150/150 (100%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[12][TOP]
>UniRef100_B7LV11 Putative DNA-binding response regulator in two-component system n=1
Tax=Escherichia fergusonii ATCC 35469 RepID=B7LV11_ESCF3
Length = 444
Score = 290 bits (743), Expect = 3e-77
Identities = 149/150 (99%), Positives = 149/150 (99%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAP TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPTTDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[13][TOP]
>UniRef100_B1EIV6 Sigma-54 dependent response regulator n=1 Tax=Escherichia albertii
TW07627 RepID=B1EIV6_9ESCH
Length = 444
Score = 290 bits (743), Expect = 3e-77
Identities = 149/150 (99%), Positives = 149/150 (99%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRN KPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNGKPFIAINCGAL 196
[14][TOP]
>UniRef100_B7MYI3 Putative DNA-binding response regulator in two-component system n=1
Tax=Escherichia coli ED1a RepID=B7MYI3_ECO81
Length = 444
Score = 290 bits (741), Expect = 5e-77
Identities = 149/150 (99%), Positives = 149/150 (99%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFL K
Sbjct: 47 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLIK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS
Sbjct: 107 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRNSKPFIAINCGAL
Sbjct: 167 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 196
[15][TOP]
>UniRef100_C2B8A5 Putative uncharacterized protein n=1 Tax=Citrobacter youngae ATCC
29220 RepID=C2B8A5_9ENTR
Length = 445
Score = 280 bits (717), Expect = 3e-74
Identities = 142/150 (94%), Positives = 147/150 (98%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAID ALEQSAPATD+RWRE+IVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYQAIDGALEQSAPATDDRWRESIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+FAQAIHNASPR+ KPFIAINCGAL
Sbjct: 168 GTGKEVFAQAIHNASPRSHKPFIAINCGAL 197
[16][TOP]
>UniRef100_A8AD34 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC
BAA-895 RepID=A8AD34_CITK8
Length = 445
Score = 278 bits (712), Expect = 1e-73
Identities = 141/150 (94%), Positives = 147/150 (98%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALYQAIDDALEQSAPA D+ WRE+IVTRSPLM+RLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYQAIDDALEQSAPAMDDSWRESIVTRSPLMIRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPR+SKPFIAINCGAL
Sbjct: 168 GTGKEIFAQAIHNASPRSSKPFIAINCGAL 197
[17][TOP]
>UniRef100_UPI0001911B00 putative transcriptional regulator n=1 Tax=Salmonella enterica
subsp. enterica serovar Typhi str. M223
RepID=UPI0001911B00
Length = 228
Score = 276 bits (707), Expect = 4e-73
Identities = 138/150 (92%), Positives = 147/150 (98%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+D+DALY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRN+KPF+AINCGAL
Sbjct: 168 GTGKEIFAQAIHNASPRNNKPFVAINCGAL 197
[18][TOP]
>UniRef100_UPI000190FBA3 putative transcriptional regulator n=1 Tax=Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750
RepID=UPI000190FBA3
Length = 275
Score = 276 bits (707), Expect = 4e-73
Identities = 138/150 (92%), Positives = 147/150 (98%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+D+DALY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRN+KPF+AINCGAL
Sbjct: 168 GTGKEIFAQAIHNASPRNNKPFVAINCGAL 197
[19][TOP]
>UniRef100_UPI000190E9C4 putative transcriptional regulator n=1 Tax=Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664
RepID=UPI000190E9C4
Length = 199
Score = 276 bits (707), Expect = 4e-73
Identities = 138/150 (92%), Positives = 147/150 (98%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 7 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 66
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+D+DALY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 67 PIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 126
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRN+KPF+AINCGAL
Sbjct: 127 GTGKEIFAQAIHNASPRNNKPFVAINCGAL 156
[20][TOP]
>UniRef100_UPI000190E89A putative transcriptional regulator n=1 Tax=Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068
RepID=UPI000190E89A
Length = 202
Score = 276 bits (707), Expect = 4e-73
Identities = 138/150 (92%), Positives = 147/150 (98%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+D+DALY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRN+KPF+AINCGAL
Sbjct: 168 GTGKEIFAQAIHNASPRNNKPFVAINCGAL 197
[21][TOP]
>UniRef100_C1M8G5 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2
RepID=C1M8G5_9ENTR
Length = 445
Score = 276 bits (707), Expect = 4e-73
Identities = 140/150 (93%), Positives = 145/150 (96%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY AID ALEQSAPATD+ WRE+IVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYHAIDGALEQSAPATDDSWRESIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+FAQAIHNASPR+ KPFIAINCGAL
Sbjct: 168 GTGKEVFAQAIHNASPRSQKPFIAINCGAL 197
[22][TOP]
>UniRef100_B4TRZ6 Transcriptional regulatory protein ZraR n=5 Tax=Salmonella enterica
subsp. enterica RepID=B4TRZ6_SALSV
Length = 445
Score = 276 bits (707), Expect = 4e-73
Identities = 138/150 (92%), Positives = 147/150 (98%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+D+DALY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPRN+KPF+AINCGAL
Sbjct: 168 GTGKEIFAQAIHNASPRNNKPFVAINCGAL 197
[23][TOP]
>UniRef100_B4T1D9 Transcriptional regulatory protein ZraR n=20 Tax=Salmonella
enterica RepID=B4T1D9_SALNS
Length = 445
Score = 275 bits (702), Expect = 2e-72
Identities = 137/150 (91%), Positives = 147/150 (98%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+D+DALY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPR++KPF+AINCGAL
Sbjct: 168 GTGKEIFAQAIHNASPRSNKPFVAINCGAL 197
[24][TOP]
>UniRef100_C0PYI7 Putative transcriptional regulator n=1 Tax=Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594
RepID=C0PYI7_SALPC
Length = 445
Score = 273 bits (698), Expect = 4e-72
Identities = 136/150 (90%), Positives = 146/150 (97%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+D+D LY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PIDRDTLYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPR++KPF+AINCGAL
Sbjct: 168 GTGKEIFAQAIHNASPRSNKPFVAINCGAL 197
[25][TOP]
>UniRef100_B5F1E2 Sigma-54 dependent transcriptional regulator/response regulator n=1
Tax=Salmonella enterica subsp. enterica serovar Agona
str. SL483 RepID=B5F1E2_SALA4
Length = 445
Score = 271 bits (694), Expect = 1e-71
Identities = 136/150 (90%), Positives = 146/150 (97%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+D+DALY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNAS R++KPF+AINCGAL
Sbjct: 168 GTGKEIFAQAIHNASSRSNKPFVAINCGAL 197
[26][TOP]
>UniRef100_A9MHH5 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- RepID=A9MHH5_SALAR
Length = 445
Score = 271 bits (693), Expect = 2e-71
Identities = 135/150 (90%), Positives = 146/150 (97%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+DKDALY+AID+ALEQ+APATD+ WR+ IVTRSPLMLRLLEQA +VAQSDVSVLINGQS
Sbjct: 108 PIDKDALYKAIDEALEQTAPATDDSWRKPIVTRSPLMLRLLEQAHMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEIFAQAIHNASPR++KPF+AINCGAL
Sbjct: 168 GTGKEIFAQAIHNASPRSNKPFVAINCGAL 197
[27][TOP]
>UniRef100_A4WDC3 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Enterobacter sp. 638 RepID=A4WDC3_ENT38
Length = 445
Score = 266 bits (681), Expect = 4e-70
Identities = 133/150 (88%), Positives = 143/150 (95%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGMQLF EIQK+QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKIDLVISDLRMDEMDGMQLFVEIQKLQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AIDDALE SAP+ DE+WRE+IVTRSP+MLRLLEQAR+VAQSDVS+LINGQS
Sbjct: 108 PVDKDALYKAIDDALEHSAPSVDEKWRESIVTRSPIMLRLLEQARMVAQSDVSLLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR+ FIAINCGAL
Sbjct: 168 GTGKEILAQAIHNASPRSKNAFIAINCGAL 197
[28][TOP]
>UniRef100_A6TCG8 Putative 2-component transcriptional regulator n=1 Tax=Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
RepID=A6TCG8_KLEP7
Length = 445
Score = 265 bits (678), Expect = 9e-70
Identities = 134/150 (89%), Positives = 143/150 (95%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDG+QLF+EIQK PGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGLQLFSEIQKGHPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AID+ALEQ +PATDE WR+AIVTRSPLMLRLLEQA +VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYKAIDEALEQRSPATDEAWRQAIVTRSPLMLRLLEQAGMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR+ KPF+AINCGAL
Sbjct: 168 GTGKEIVAQAIHNASPRHDKPFVAINCGAL 197
[29][TOP]
>UniRef100_C4XC16 Putative 2-component transcriptional regulator n=1 Tax=Klebsiella
pneumoniae NTUH-K2044 RepID=C4XC16_KLEPN
Length = 445
Score = 265 bits (678), Expect = 9e-70
Identities = 134/150 (89%), Positives = 143/150 (95%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDG+QLF+EIQK PGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGLQLFSEIQKGHPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AID+ALEQ +PATDE WR+AIVTRSPLMLRLLEQA +VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYKAIDEALEQRSPATDEAWRQAIVTRSPLMLRLLEQAGMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR+ KPF+AINCGAL
Sbjct: 168 GTGKEIVAQAIHNASPRHDKPFVAINCGAL 197
[30][TOP]
>UniRef100_B5XNI3 Sigma-54 dependent DNA-binding response regulator n=1
Tax=Klebsiella pneumoniae 342 RepID=B5XNI3_KLEP3
Length = 445
Score = 265 bits (676), Expect = 2e-69
Identities = 134/150 (89%), Positives = 143/150 (95%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDG+QLF+EIQK PGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGLQLFSEIQKGLPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AID+ALEQ +PATDE WR+AIVTRSPLMLRLLEQA +VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYKAIDEALEQRSPATDEAWRQAIVTRSPLMLRLLEQAGMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR+ KPF+AINCGAL
Sbjct: 168 GTGKEIVAQAIHNASPRHDKPFVAINCGAL 197
[31][TOP]
>UniRef100_C8SYW7 C4-dicarboxylate transport transcriptional regulatory protein DctD
n=1 Tax=Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884 RepID=C8SYW7_KLEPR
Length = 445
Score = 265 bits (676), Expect = 2e-69
Identities = 134/150 (89%), Positives = 143/150 (95%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDG+QLF+EIQK PGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGLQLFSEIQKGLPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AID+ALEQ +PATDE WR+AIVTRSPLMLRLLEQA +VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYKAIDEALEQRSPATDEAWRQAIVTRSPLMLRLLEQAGMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR+ KPF+AINCGAL
Sbjct: 168 GTGKEIVAQAIHNASPRHDKPFVAINCGAL 197
[32][TOP]
>UniRef100_UPI0001827294 hypothetical protein ENTCAN_03430 n=1 Tax=Enterobacter cancerogenus
ATCC 35316 RepID=UPI0001827294
Length = 445
Score = 262 bits (670), Expect = 8e-69
Identities = 133/150 (88%), Positives = 141/150 (94%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGMQLFAEIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKIDLVISDLRMDEMDGMQLFAEIQKQQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AID ALE +AP+ DE WRE+IVTRSP+MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYKAIDSALEHAAPSGDETWRESIVTRSPVMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR+ FIAINCGAL
Sbjct: 168 GTGKEILAQAIHNASPRSKNAFIAINCGAL 197
[33][TOP]
>UniRef100_A7MGY2 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii ATCC
BAA-894 RepID=A7MGY2_ENTS8
Length = 445
Score = 262 bits (669), Expect = 1e-68
Identities = 133/150 (88%), Positives = 140/150 (93%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGMQLFAEIQK+QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKIDLVISDLRMDEMDGMQLFAEIQKLQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AIDDAL +APA DE+WRE IVTRSP+MLRLLEQA +VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYKAIDDALAHAAPAGDEQWRETIVTRSPVMLRLLEQAHMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR FIAINCGAL
Sbjct: 168 GTGKEILAQAIHNASPRAKNAFIAINCGAL 197
[34][TOP]
>UniRef100_C9XY62 Uncharacterized protein yfhA n=1 Tax=Cronobacter turicensis
RepID=C9XY62_9ENTR
Length = 420
Score = 261 bits (667), Expect = 2e-68
Identities = 133/150 (88%), Positives = 139/150 (92%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGMQLFAEIQK+QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 23 REKIDLVISDLRMDEMDGMQLFAEIQKLQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 82
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AIDDAL +APA DE+WRE IVTRSP MLRLLEQA +VAQSDVSVLINGQS
Sbjct: 83 PVDKDALYKAIDDALAHAAPAGDEQWRETIVTRSPAMLRLLEQAHMVAQSDVSVLINGQS 142
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR FIAINCGAL
Sbjct: 143 GTGKEILAQAIHNASPRAKNAFIAINCGAL 172
[35][TOP]
>UniRef100_UPI00017F3565 two component, sigma54 specific, Fis family transcriptional
regulator n=1 Tax=Escherichia coli O157:H7 str. EC4024
RepID=UPI00017F3565
Length = 252
Score = 258 bits (660), Expect = 1e-67
Identities = 130/150 (86%), Positives = 140/150 (93%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDG+QLF EIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKIDLVISDLRMDEMDGLQLFTEIQKQQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVDKDALY+AID ALE +AP+ D+ WRE+IVTRSP+MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDKDALYKAIDSALEHAAPSGDDAWRESIVTRSPVMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKEI AQAIHNASPR+ FIAINCGAL
Sbjct: 168 GTGKEILAQAIHNASPRSKNAFIAINCGAL 197
[36][TOP]
>UniRef100_C7BRL9 Similar to putative 2-component transcriptional regulator yfha o
escherichia coli n=1 Tax=Photorhabdus asymbiotica
RepID=C7BRL9_9ENTR
Length = 445
Score = 255 bits (651), Expect = 1e-66
Identities = 130/150 (86%), Positives = 137/150 (91%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK DLVISDLRMDEMDGM LFAEIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 KEKTDLVISDLRMDEMDGMALFAEIQKQQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID AL S PA DE+WRE IVTRSP+MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDGALALSTPAGDEQWREQIVTRSPVMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR KPFIAINCGAL
Sbjct: 168 GTGKEVLAQAIHRASPRAKKPFIAINCGAL 197
[37][TOP]
>UniRef100_C6CAP7 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Dickeya dadantii Ech703
RepID=C6CAP7_DICDC
Length = 445
Score = 254 bits (650), Expect = 2e-66
Identities = 128/150 (85%), Positives = 140/150 (93%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE+++LVISDLRMDEMDGM LFAEIQKVQPG+PVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REQIELVISDLRMDEMDGMALFAEIQKVQPGLPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AIDDAL+ SAPA DERWRE I+TRSP+MLRLLEQA+LVAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDDALQISAPAGDERWRETIITRSPIMLRLLEQAKLVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAGNAFIAINCGAL 197
[38][TOP]
>UniRef100_Q7N200 Similar to putative 2-component transcriptional regulator YfhA of
Escherichia coli n=1 Tax=Photorhabdus luminescens subsp.
laumondii RepID=Q7N200_PHOLL
Length = 445
Score = 254 bits (648), Expect = 3e-66
Identities = 128/150 (85%), Positives = 138/150 (92%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK+DLVISDLRMDEMDGM LFAEIQK QPGMPVIILTAHGSIP+AVAATQQGVFSFLTK
Sbjct: 48 KEKIDLVISDLRMDEMDGMALFAEIQKQQPGMPVIILTAHGSIPEAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID AL + PA+DE+WRE IVTRSP MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDGALALTTPASDEQWREQIVTRSPAMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR KPFIAINCGAL
Sbjct: 168 GTGKEVLAQAIHRASPRAKKPFIAINCGAL 197
[39][TOP]
>UniRef100_C4UGI8 Putative uncharacterized protein n=1 Tax=Yersinia ruckeri ATCC
29473 RepID=C4UGI8_YERRU
Length = 422
Score = 253 bits (646), Expect = 5e-66
Identities = 129/150 (86%), Positives = 136/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LF EIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 25 REKIDLVISDLRMDEMDGMALFVEIQKYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 84
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WR AIVTRSPLMLRLLEQA++VAQSDVSVLINGQS
Sbjct: 85 PVDRDALYKAIDAALELSIPAGDDSWRAAIVTRSPLMLRLLEQAKMVAQSDVSVLINGQS 144
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 145 GTGKEVLAQAIHGASPRGKKAFIAINCGAL 174
[40][TOP]
>UniRef100_A8GI07 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Serratia proteamaculans 568
RepID=A8GI07_SERP5
Length = 445
Score = 252 bits (644), Expect = 8e-66
Identities = 128/150 (85%), Positives = 136/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LFAEIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKIDLVISDLRMDEMDGMALFAEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AIDDAL S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLING S
Sbjct: 108 PVDRDALYKAIDDALSLSLPAGDDSWREDIVTRSPIMLRLLEQAKMVAQSDVSVLINGHS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHGASPRGKKAFIAINCGAL 197
[41][TOP]
>UniRef100_Q6D241 Two-component system response regulator n=1 Tax=Pectobacterium
atrosepticum RepID=Q6D241_ERWCT
Length = 445
Score = 252 bits (643), Expect = 1e-65
Identities = 128/150 (85%), Positives = 137/150 (91%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK DLVISDLRMDEMDGM LF+EIQ+ QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKFDLVISDLRMDEMDGMALFSEIQRYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+A+ SAPA DE WRE IVTRSP+MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDEAMALSAPAGDESWRETIVTRSPIMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 197
[42][TOP]
>UniRef100_UPI0001A43BD5 two-component system response regulator n=1 Tax=Pectobacterium
carotovorum subsp. brasiliensis PBR1692
RepID=UPI0001A43BD5
Length = 445
Score = 251 bits (642), Expect = 1e-65
Identities = 129/150 (86%), Positives = 136/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE DLVISDLRMDEMDGM LFAEIQ+ QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 RETFDLVISDLRMDEMDGMALFAEIQRYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+AL SAPA DE WRE IVTRSP+MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDEALALSAPAGDESWRETIVTRSPIMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 197
[43][TOP]
>UniRef100_UPI000169B0DE two-component transcriptional regulator n=1 Tax=Yersinia pestis
FV-1 RepID=UPI000169B0DE
Length = 445
Score = 251 bits (642), Expect = 1e-65
Identities = 128/150 (85%), Positives = 137/150 (91%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+D+VISDLRMDEMDGM LFAEIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKIDIVISDLRMDEMDGMALFAEIQKYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDAALELSIPAGDDTWREEIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 197
[44][TOP]
>UniRef100_A4TMX1 Two-component system response regulator n=21 Tax=Yersinia
RepID=A4TMX1_YERPP
Length = 445
Score = 251 bits (642), Expect = 1e-65
Identities = 128/150 (85%), Positives = 137/150 (91%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+D+VISDLRMDEMDGM LFAEIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 REKIDIVISDLRMDEMDGMALFAEIQKYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDAALELSIPAGDDTWREEIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 197
[45][TOP]
>UniRef100_C4TVI8 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii ATCC
33638 RepID=C4TVI8_YERKR
Length = 265
Score = 251 bits (642), Expect = 1e-65
Identities = 129/150 (86%), Positives = 137/150 (91%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LFAEIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 25 REKIDLVISDLRMDEMDGMALFAEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 84
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 85 PVDRDALYKAIDAALELSIPAGDDTWREEIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 144
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 145 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 174
[46][TOP]
>UniRef100_C4SN87 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii
ATCC 33641 RepID=C4SN87_YERFR
Length = 422
Score = 251 bits (642), Expect = 1e-65
Identities = 129/150 (86%), Positives = 137/150 (91%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LFAEIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 25 REKIDLVISDLRMDEMDGMALFAEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 84
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 85 PVDRDALYKAIDAALELSIPAGDDTWREEIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 144
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 145 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 174
[47][TOP]
>UniRef100_C6NIQ1 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Pectobacterium wasabiae
WPP163 RepID=C6NIQ1_9ENTR
Length = 445
Score = 251 bits (641), Expect = 2e-65
Identities = 128/150 (85%), Positives = 136/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE DLVISDLRMDEMDGM LF+EIQ+ QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 RETFDLVISDLRMDEMDGMALFSEIQRYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AIDDA+ SAPA DE WRE IVTRSP+MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDDAMALSAPAGDESWRETIVTRSPIMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 197
[48][TOP]
>UniRef100_C6CNN7 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Dickeya zeae Ech1591
RepID=C6CNN7_DICZE
Length = 445
Score = 251 bits (640), Expect = 2e-65
Identities = 126/150 (84%), Positives = 138/150 (92%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDG+ LFAEIQK QPGMPVIILTAHGSIP+AVAATQQGVFSFLTK
Sbjct: 48 REKIDLVISDLRMDEMDGLALFAEIQKNQPGMPVIILTAHGSIPEAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AIDDAL+ S PA+DE WR A+VTRSP+M RLLEQA++VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDDALKLSPPASDESWRAAVVTRSPIMQRLLEQAKMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR PFIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAGMPFIAINCGAL 197
[49][TOP]
>UniRef100_C4UBJ8 Putative uncharacterized protein n=1 Tax=Yersinia aldovae ATCC
35236 RepID=C4UBJ8_YERAL
Length = 422
Score = 251 bits (640), Expect = 2e-65
Identities = 128/150 (85%), Positives = 137/150 (91%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LF EIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 25 REKIDLVISDLRMDEMDGMALFVEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 84
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE+IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 85 PVDRDALYKAIDAALELSIPAGDDSWRESIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 144
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 145 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 174
[50][TOP]
>UniRef100_UPI0001A43A83 two-component system response regulator n=1 Tax=Pectobacterium
carotovorum subsp. carotovorum WPP14 RepID=UPI0001A43A83
Length = 445
Score = 250 bits (639), Expect = 3e-65
Identities = 128/150 (85%), Positives = 136/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE DLVISDLRMDEMDGM LF+EIQ+ QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 RETFDLVISDLRMDEMDGMALFSEIQRYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+AL SAPA DE WRE IVTRSP+MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDEALALSAPAGDESWRETIVTRSPIMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 197
[51][TOP]
>UniRef100_C6DBK9 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Pectobacterium carotovorum
subsp. carotovorum PC1 RepID=C6DBK9_PECCP
Length = 445
Score = 250 bits (639), Expect = 3e-65
Identities = 128/150 (85%), Positives = 136/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE DLVISDLRMDEMDGM LF+EIQ+ QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 RETFDLVISDLRMDEMDGMALFSEIQRYQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+AL SAPA DE WRE IVTRSP+MLRLLEQAR+VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDEALALSAPAGDESWRETIVTRSPIMLRLLEQARMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 197
[52][TOP]
>UniRef100_A1JKM9 Two-component system response regulator n=1 Tax=Yersinia
enterocolitica subsp. enterocolitica 8081
RepID=A1JKM9_YERE8
Length = 445
Score = 250 bits (639), Expect = 3e-65
Identities = 128/150 (85%), Positives = 137/150 (91%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R+K+DLVISDLRMDEMDGM LFAEIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 RDKIDLVISDLRMDEMDGMALFAEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDAALELSIPAGDDTWREEIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 197
[53][TOP]
>UniRef100_C8QTI4 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Dickeya dadantii Ech586
RepID=C8QTI4_DICDA
Length = 445
Score = 250 bits (639), Expect = 3e-65
Identities = 125/150 (83%), Positives = 138/150 (92%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDG+ LFAEIQK QPGMPVIILTAHGSIP+AVAATQQGVFSFLTK
Sbjct: 48 REKIDLVISDLRMDEMDGLALFAEIQKNQPGMPVIILTAHGSIPEAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AIDDAL+ S P +DE WR A+VTRSP+M RLLEQA++VAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDDALKLSPPTSDESWRAAVVTRSPIMQRLLEQAKMVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR +PFIAINCGAL
Sbjct: 168 GTGKEVLAQAIHAASPRAGRPFIAINCGAL 197
[54][TOP]
>UniRef100_C4USF9 Putative uncharacterized protein n=1 Tax=Yersinia rohdei ATCC 43380
RepID=C4USF9_YERRO
Length = 422
Score = 250 bits (638), Expect = 4e-65
Identities = 128/150 (85%), Positives = 136/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LF EIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 25 REKIDLVISDLRMDEMDGMALFVEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 84
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 85 PVDRDALYKAIDAALELSIPAGDDTWREEIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 144
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 145 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 174
[55][TOP]
>UniRef100_C4S103 Putative uncharacterized protein n=1 Tax=Yersinia bercovieri ATCC
43970 RepID=C4S103_YERBE
Length = 422
Score = 250 bits (638), Expect = 4e-65
Identities = 128/150 (85%), Positives = 136/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LF EIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 25 REKIDLVISDLRMDEMDGMALFVEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 84
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 85 PVDRDALYKAIDAALELSMPAGDDSWREEIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 144
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 145 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 174
[56][TOP]
>UniRef100_C4SB64 Putative uncharacterized protein n=1 Tax=Yersinia mollaretii ATCC
43969 RepID=C4SB64_YERMO
Length = 422
Score = 248 bits (632), Expect = 2e-64
Identities = 127/150 (84%), Positives = 135/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LF EIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 25 REKIDLVISDLRMDEMDGMALFVEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 84
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID AL S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLINGQS
Sbjct: 85 PVDRDALYKAIDAALALSMPAGDDSWREEIVTRSPVMLRLLEQAKMVAQSDVSVLINGQS 144
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 145 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 174
[57][TOP]
>UniRef100_C8Q4M3 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Pantoea sp. At-9b
RepID=C8Q4M3_9ENTR
Length = 444
Score = 247 bits (631), Expect = 3e-64
Identities = 123/150 (82%), Positives = 138/150 (92%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EKVDLVISDLRMDEMDG+ LF EIQK G+PVIILTAHGSIP+AV+ATQQGVFSFLTK
Sbjct: 47 KEKVDLVISDLRMDEMDGLALFGEIQKRHTGLPVIILTAHGSIPEAVSATQQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+AL Q APA+D+ WREA+VTR+PLMLRLLEQA +VAQSDVS+LINGQS
Sbjct: 107 PVDRDALYKAIDEALAQRAPASDDSWREAVVTRNPLMLRLLEQAHMVAQSDVSILINGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR SKPFIAINCGAL
Sbjct: 167 GTGKEVLAQAIHAASPRASKPFIAINCGAL 196
[58][TOP]
>UniRef100_C4T7E9 Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC
29909 RepID=C4T7E9_YERIN
Length = 422
Score = 246 bits (629), Expect = 4e-64
Identities = 127/150 (84%), Positives = 135/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REK+DLVISDLRMDEMDGM LF EIQK QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 25 REKIDLVISDLRMDEMDGMALFVEIQKHQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 84
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID ALE S PA D+ WRE IVTRSP+MLRLLEQA++VAQSDVSVLI GQS
Sbjct: 85 PVDRDALYKAIDAALELSIPAGDDTWREEIVTRSPVMLRLLEQAKMVAQSDVSVLIIGQS 144
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 145 GTGKEVLAQAIHAASPRAKKAFIAINCGAL 174
[59][TOP]
>UniRef100_C2LI28 Two-component system response regulator (Sigma-54 interacting
regulator) n=2 Tax=Proteus mirabilis RepID=C2LI28_PROMI
Length = 445
Score = 246 bits (629), Expect = 4e-64
Identities = 125/150 (83%), Positives = 135/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK+DLVISDLRMDEMDGM LFAEIQ+ QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 KEKIDLVISDLRMDEMDGMALFAEIQRQQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+ALE +DE W + IVTRSP MLRLLEQA+LVAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDEALELVTTVSDEEWSKDIVTRSPQMLRLLEQAKLVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR KPFIAINCGAL
Sbjct: 168 GTGKEVLAQAIHRASPRAKKPFIAINCGAL 197
[60][TOP]
>UniRef100_C0AVS1 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198
RepID=C0AVS1_9ENTR
Length = 235
Score = 246 bits (627), Expect = 8e-64
Identities = 125/150 (83%), Positives = 135/150 (90%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK+DLVISDLRMDEMDGM LFAEIQ+ QPGMPVIILTAHGSIPDAVAATQQGVFSFLTK
Sbjct: 48 KEKIDLVISDLRMDEMDGMALFAEIQRQQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+ALE +DE W + IVTRSP MLRLLEQA+LVAQSDVSVLINGQS
Sbjct: 108 PVDRDALYKAIDEALELVTIVSDEEWSKDIVTRSPQMLRLLEQAKLVAQSDVSVLINGQS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR KPFIAINCGAL
Sbjct: 168 GTGKEVLAQAIHRASPRAKKPFIAINCGAL 197
[61][TOP]
>UniRef100_B2VI22 Two-component system response regulator n=1 Tax=Erwinia
tasmaniensis RepID=B2VI22_ERWT9
Length = 444
Score = 241 bits (614), Expect = 2e-62
Identities = 122/150 (81%), Positives = 131/150 (87%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE DL ISDLRMDEMDGM LF EIQK++PGMPVIILTAHGSIPDAVAAT+QGVFSFLTK
Sbjct: 47 RENFDLTISDLRMDEMDGMTLFVEIQKLKPGMPVIILTAHGSIPDAVAATRQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+AL AP DE WR IVTRSPLMLRLLEQ R+VAQSDVSVLI+GQS
Sbjct: 107 PVDRDALYKAIDEALAHRAPVADEAWRANIVTRSPLMLRLLEQTRMVAQSDVSVLIHGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH ASPR K FIAINCGAL
Sbjct: 167 GTGKEVLAQAIHGASPRAGKTFIAINCGAL 196
[62][TOP]
>UniRef100_UPI000197C66E hypothetical protein PROVRETT_00812 n=1 Tax=Providencia rettgeri
DSM 1131 RepID=UPI000197C66E
Length = 446
Score = 239 bits (610), Expect = 7e-62
Identities = 123/151 (81%), Positives = 132/151 (87%), Gaps = 1/151 (0%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK+DLVISDLRMDEMDGM LF EIQK P MPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 KEKLDLVISDLRMDEMDGMALFDEIQKAHPNMPVIILTAHGSIPDAVAATQRGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALE-QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
PVDKDALY+AID+AL S P +DE W IVTRSPLM+RLLEQA +VAQSDVSVLINGQ
Sbjct: 108 PVDKDALYKAIDEALALSSTPISDEEWSAGIVTRSPLMIRLLEQAHMVAQSDVSVLINGQ 167
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ AQAIH ASPR KPFIAINCGAL
Sbjct: 168 SGTGKEVLAQAIHKASPRARKPFIAINCGAL 198
[63][TOP]
>UniRef100_B2Q0Z5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
25827 RepID=B2Q0Z5_PROST
Length = 446
Score = 239 bits (609), Expect = 9e-62
Identities = 122/151 (80%), Positives = 133/151 (88%), Gaps = 1/151 (0%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK++LVISDLRMDEMDGM LF EIQK P +PVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 KEKIELVISDLRMDEMDGMALFDEIQKQHPNLPVIILTAHGSIPDAVAATQRGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALE-QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
PVDKDALY+AID+AL S P +DE W E IVTRSPLM+RLLEQA +VAQSDVSVLINGQ
Sbjct: 108 PVDKDALYKAIDEALALSSTPISDEEWSEGIVTRSPLMIRLLEQAHMVAQSDVSVLINGQ 167
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ AQAIH ASPR KPFIAINCGAL
Sbjct: 168 SGTGKEVLAQAIHKASPRARKPFIAINCGAL 198
[64][TOP]
>UniRef100_C5B7V8 Transcriptional regulatory protein ZraR n=1 Tax=Edwardsiella
ictaluri 93-146 RepID=C5B7V8_EDWI9
Length = 446
Score = 238 bits (608), Expect = 1e-61
Identities = 122/151 (80%), Positives = 136/151 (90%), Gaps = 1/151 (0%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R +DLVISDLRMDEMDG+ LF+EIQ+ QPG+PVIILTAHGSIPDAV+ATQQGVFSFLTK
Sbjct: 48 RAPIDLVISDLRMDEMDGLALFSEIQRRQPGLPVIILTAHGSIPDAVSATQQGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAP-ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
PVD+DALY+AIDDAL QS P D+ WR+A VTRSPLMLRLLEQAR+VAQSDVSVLINGQ
Sbjct: 108 PVDRDALYRAIDDALAQSMPQGGDDGWRQAFVTRSPLMLRLLEQARMVAQSDVSVLINGQ 167
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ A+AIH+ASPR K FIAINCGAL
Sbjct: 168 SGTGKELLARAIHSASPRVGKAFIAINCGAL 198
[65][TOP]
>UniRef100_UPI0001844A01 hypothetical protein PROVRUST_02206 n=1 Tax=Providencia rustigianii
DSM 4541 RepID=UPI0001844A01
Length = 446
Score = 237 bits (605), Expect = 3e-61
Identities = 120/151 (79%), Positives = 131/151 (86%), Gaps = 1/151 (0%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK+DLVISDLRMDEMDGM LF E+QK P +PVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 KEKIDLVISDLRMDEMDGMALFDEVQKAHPNLPVIILTAHGSIPDAVAATQRGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALE-QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
PVDKDALY+AID+AL S P +DE W IVTRSPLM+RLLEQA +VAQSDVSVLINGQ
Sbjct: 108 PVDKDALYKAIDEALALSSTPMSDEEWSSGIVTRSPLMIRLLEQAHMVAQSDVSVLINGQ 167
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ AQAIH SPR KPFIAINCGAL
Sbjct: 168 SGTGKEVLAQAIHRVSPRAHKPFIAINCGAL 198
[66][TOP]
>UniRef100_D0FQA2 Two-component system response regulator n=1 Tax=Erwinia pyrifoliae
RepID=D0FQA2_ERWPY
Length = 444
Score = 237 bits (605), Expect = 3e-61
Identities = 121/150 (80%), Positives = 131/150 (87%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE VDL ISDLRMDEMDGM LF EIQK++PGMPVIILTAHGSIPDAVAAT+QGVFSFLTK
Sbjct: 47 RENVDLAISDLRMDEMDGMALFVEIQKLKPGMPVIILTAHGSIPDAVAATRQGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY+AID+AL AP DE WRE IVTRSP MLRLLEQAR+VA+SDVSVLI+GQS
Sbjct: 107 PVDRDALYKAIDEALAYRAPVGDEAWREKIVTRSPQMLRLLEQARMVARSDVSVLIHGQS 166
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ AQAIH S R K FIAINCGAL
Sbjct: 167 GTGKEVLAQAIHGVSQRAGKAFIAINCGAL 196
[67][TOP]
>UniRef100_B6XEC8 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens
DSM 30120 RepID=B6XEC8_9ENTR
Length = 446
Score = 235 bits (599), Expect = 1e-60
Identities = 119/151 (78%), Positives = 130/151 (86%), Gaps = 1/151 (0%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK+DLVISDLRMDEMDGM LF E+QK P +PVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 KEKIDLVISDLRMDEMDGMALFDEVQKAHPNLPVIILTAHGSIPDAVAATQRGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALE-QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
PVDKDALY+AID+AL S P +D W IVTRSPLM+RLLEQA +VAQSDVSVLINGQ
Sbjct: 108 PVDKDALYKAIDEALALSSTPISDVEWNSGIVTRSPLMIRLLEQAHMVAQSDVSVLINGQ 167
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ AQAIH SPR KPFIAINCGAL
Sbjct: 168 SGTGKEVLAQAIHKVSPRAHKPFIAINCGAL 198
[68][TOP]
>UniRef100_Q1QZN0 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Chromohalobacter salexigens DSM 3043
RepID=Q1QZN0_CHRSD
Length = 466
Score = 206 bits (524), Expect = 7e-52
Identities = 105/152 (69%), Positives = 125/152 (82%), Gaps = 3/152 (1%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
++ DLV+SDLRMDEMDGM LF E+Q+ PGMPVIILTAHGSIPDAV+AT+QGVFSFLTKP
Sbjct: 48 DRPDLVLSDLRMDEMDGMALFHELQRRAPGMPVIILTAHGSIPDAVSATRQGVFSFLTKP 107
Query: 184 VDKDALYQAIDDALEQSAP---ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLING 354
VD+D L+ AI++A+ Q+A A D+ WR I+TRSP M R+LEQAR+VA SDVSVLI G
Sbjct: 108 VDRDELFAAIEEAMAQTASTHGAGDDAWRAEIITRSPQMERILEQARMVAASDVSVLITG 167
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SG+GKE+ A AIH AS R KPF+AINCGAL
Sbjct: 168 ASGSGKELLANAIHQASGRADKPFVAINCGAL 199
[69][TOP]
>UniRef100_Q2NS23 Putative two-component transcriptional regulator n=1 Tax=Sodalis
glossinidius str. 'morsitans' RepID=Q2NS23_SODGM
Length = 259
Score = 204 bits (520), Expect = 2e-51
Identities = 107/137 (78%), Positives = 121/137 (88%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R K+DLVISDLRMDEMDG+ LF IQ+ QPG+PVIILTAHGSIPDAV+ATQ+GVFSFLTK
Sbjct: 48 RGKIDLVISDLRMDEMDGIALFKAIQQ-QPGLPVIILTAHGSIPDAVSATQEGVFSFLTK 106
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD+DALY AID AL + A DERW +AIVTRSPLMLRLLEQA++VAQSDVS+LI+GQS
Sbjct: 107 PVDRDALYCAIDGALALTRLAGDERWWDAIVTRSPLMLRLLEQAKMVAQSDVSILISGQS 166
Query: 361 GTGKEIFAQAIHNASPR 411
GTGKEI A+ IH ASPR
Sbjct: 167 GTGKEILAKVIHAASPR 183
[70][TOP]
>UniRef100_UPI000190ACDA sigma-54 dependent transcriptional regulator/response regulator n=1
Tax=Salmonella enterica subsp. enterica serovar Typhi
str. 404ty RepID=UPI000190ACDA
Length = 151
Score = 186 bits (472), Expect = 7e-46
Identities = 93/104 (89%), Positives = 99/104 (95%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
REKVDLVISDLRMDEMDGMQLF EIQKVQPGMPVIILTAHGSIPDAVAATQ+GVFSFLTK
Sbjct: 48 REKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVFSFLTK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQA 312
P+D+DALY+AID+ALEQSAPATD+ WR AIVTRSPLMLRLL A
Sbjct: 108 PIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLRTA 151
[71][TOP]
>UniRef100_Q2BPP2 Putative uncharacterized protein n=1 Tax=Neptuniibacter
caesariensis RepID=Q2BPP2_9GAMM
Length = 439
Score = 182 bits (461), Expect = 1e-44
Identities = 88/149 (59%), Positives = 117/149 (78%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
++ DL+I+DLRM+ MDGM LF ++Q++ P +PV+I+TAHGSIP+AV ATQQGVF FLTKP
Sbjct: 44 DQFDLLITDLRMEGMDGMALFNQVQRLYPQLPVVIITAHGSIPEAVTATQQGVFGFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 363
+D+D L Q I AL ++ + +WRE I++RS +M LL +A +A SDVSVL+ G SG
Sbjct: 104 IDRDQLLQTISAALASTSRSLG-KWRENIISRSSIMENLLAEAEQIAGSDVSVLVTGPSG 162
Query: 364 TGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+GKE+ A AIHNASPR+ KPF+AINCGAL
Sbjct: 163 SGKELMANAIHNASPRHKKPFVAINCGAL 191
[72][TOP]
>UniRef100_C6XC55 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Methylovorus sp. SIP3-4
RepID=C6XC55_METSD
Length = 464
Score = 178 bits (451), Expect = 2e-43
Identities = 91/152 (59%), Positives = 111/152 (73%), Gaps = 7/152 (4%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LVISDLRM MDG+ LF I + P +PVI+LTAHGSIP+AV AT++GVF FLTKP D
Sbjct: 58 LVISDLRMPRMDGLALFDAIHQADPALPVILLTAHGSIPEAVDATRRGVFGFLTKPFDSK 117
Query: 196 ALYQAIDDALEQSAPA-------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLING 354
+L Q ++ AL +A A D+ WREAI+TRSP M LL QA+L+A SD SV I G
Sbjct: 118 SLLQQVEAALRLTAGAHVTADSTEDQSWREAIITRSPHMENLLSQAKLMAMSDASVFIQG 177
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ A+AIH ASPRN +PF+AINCGA+
Sbjct: 178 DSGTGKELLARAIHKASPRNRRPFVAINCGAI 209
[73][TOP]
>UniRef100_Q2SM36 Sigma 54-dependent transcriptional activator containing CheY-like
receiver domain n=1 Tax=Hahella chejuensis KCTC 2396
RepID=Q2SM36_HAHCH
Length = 453
Score = 173 bits (438), Expect = 6e-42
Identities = 92/151 (60%), Positives = 116/151 (76%), Gaps = 1/151 (0%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R++ LVISDL+MD MDG+QL IQ+ PG PVI+LTAHGSI +AV ATQ+G F+FLTK
Sbjct: 50 RKQPILVISDLKMDGMDGIQLLEHIQRDWPGTPVIMLTAHGSISEAVVATQKGAFAFLTK 109
Query: 181 PVDKDALYQAIDDALE-QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
PVD++ L I+ AL SA + ++IVTRS + +LLEQA++VAQSDV+VLI G+
Sbjct: 110 PVDREELRTTIEKALVGHSANESAANVFQSIVTRSAKLYQLLEQAKMVAQSDVNVLIQGE 169
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ AQAIH+ASPR KPFI INCGA+
Sbjct: 170 SGTGKEVLAQAIHDASPRRDKPFIPINCGAI 200
[74][TOP]
>UniRef100_UPI0001AEB918 two-component system response regulator n=1 Tax=Alteromonas
macleodii ATCC 27126 RepID=UPI0001AEB918
Length = 446
Score = 170 bits (430), Expect = 5e-41
Identities = 86/149 (57%), Positives = 109/149 (73%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
+ D+V+SDLRM +DG+ LF EI ++ +PVI++TAHG+I DAVAATQ+GVF FL KP
Sbjct: 51 DNYDVVLSDLRMPGLDGLSLFEEIMGIRKDIPVILMTAHGTIADAVAATQRGVFGFLPKP 110
Query: 184 VDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 363
VD D L + AL QS A W + I+TRSP ML +L+QA +AQ +VSVLI+G SG
Sbjct: 111 VDHDELRALLQKALSQSQAAQPGDWAKDIITRSPEMLNVLDQAFRIAQREVSVLISGASG 170
Query: 364 TGKEIFAQAIHNASPRNSKPFIAINCGAL 450
TGKE+ A AIH AS R+ KPF+AINCGAL
Sbjct: 171 TGKELLANAIHKASNRSDKPFVAINCGAL 199
[75][TOP]
>UniRef100_Q2S7T0 Sigma 54-dependent transcriptional activator containing CheY-like
receiver domain n=1 Tax=Hahella chejuensis KCTC 2396
RepID=Q2S7T0_HAHCH
Length = 446
Score = 169 bits (429), Expect = 7e-41
Identities = 80/150 (53%), Positives = 113/150 (75%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+ K +L+I+DLRMDE+DG+ LF +Q + +PVII+TAHG+IP+AV+ATQ+GVF FL K
Sbjct: 48 QNKFNLLITDLRMDEIDGIGLFERVQAINASLPVIIITAHGTIPEAVSATQKGVFGFLPK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P++K+ L I+ AL Q+ E W E I++ S M +LL QA++ AQ++V++LI G S
Sbjct: 108 PIEKEQLLNTIEAALSQTQHHMSESWCEEIISTSSRMQQLLGQAKMAAQTNVNILITGPS 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A+A+H ASPR +KPF+ INCGAL
Sbjct: 168 GTGKELLARAVHKASPRANKPFVTINCGAL 197
[76][TOP]
>UniRef100_B4RXE3 Two-component system response regulator n=1 Tax=Alteromonas
macleodii 'Deep ecotype' RepID=B4RXE3_ALTMD
Length = 446
Score = 168 bits (426), Expect = 2e-40
Identities = 85/149 (57%), Positives = 109/149 (73%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
+ D+V+SDLRM +DG+ LF EI ++ +PVI++TAHG+I DAVAATQ+GVF FL KP
Sbjct: 51 DSFDVVLSDLRMPGLDGLSLFEEIMGIRKDIPVILMTAHGTIADAVAATQRGVFGFLPKP 110
Query: 184 VDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 363
VD D L + AL QS A W + I+TRSP ML +L+QA +A+ +VSVLI+G SG
Sbjct: 111 VDHDELRTLLQKALSQSQAAQPGDWAKDIITRSPEMLNVLDQAFRIAKREVSVLISGASG 170
Query: 364 TGKEIFAQAIHNASPRNSKPFIAINCGAL 450
TGKE+ A AIH AS R+ KPF+AINCGAL
Sbjct: 171 TGKELLANAIHKASNRSDKPFVAINCGAL 199
[77][TOP]
>UniRef100_Q1H2G4 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Methylobacillus flagellatus KT
RepID=Q1H2G4_METFK
Length = 456
Score = 167 bits (424), Expect = 3e-40
Identities = 87/152 (57%), Positives = 108/152 (71%), Gaps = 7/152 (4%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LVI+DLRM MDG+ LF I + P +PVI++TAHGSIP+AV ATQ+GVF FLTKP D
Sbjct: 52 LVITDLRMPGMDGLALFDAIHQSDPALPVIMVTAHGSIPEAVDATQRGVFGFLTKPFDSK 111
Query: 196 ALYQAIDDAL-------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLING 354
+L Q ++ AL + D WR++I+TRSP M LL QA+L+A SD SV I G
Sbjct: 112 SLLQQVEAALRIGTGDLQPHDQDIDNEWRKSIITRSPQMENLLGQAKLMAVSDASVFIQG 171
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+SGTGKE+ A+AIH ASPR KPFIAINCGA+
Sbjct: 172 ESGTGKELLARAIHQASPRRDKPFIAINCGAI 203
[78][TOP]
>UniRef100_Q3SF90 Two Component Transcriptional Regulator, Fis family n=1
Tax=Thiobacillus denitrificans ATCC 25259
RepID=Q3SF90_THIDA
Length = 449
Score = 167 bits (423), Expect = 3e-40
Identities = 85/148 (57%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D V++DL+M MDGM LF IQ P +PV++LTAHG+IPDAVAATQQG+F +LTKP D
Sbjct: 49 DAVLTDLQMAGMDGMALFRAIQARDPALPVVVLTAHGTIPDAVAATQQGLFGYLTKPYDA 108
Query: 193 DALYQAIDDA--LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 366
L + + A L SA + WR I+T SP M LL +ARL AQS+ S+LI G+SGT
Sbjct: 109 PTLIELLKRATRLGVSAAEVADDWRAEIITASPAMEALLAEARLAAQSEASLLIQGESGT 168
Query: 367 GKEIFAQAIHNASPRNSKPFIAINCGAL 450
GKE+ A+AIH ASPR +KPF+AINCGA+
Sbjct: 169 GKELLARAIHRASPRRAKPFVAINCGAI 196
[79][TOP]
>UniRef100_Q15VG3 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Pseudoalteromonas atlantica T6c
RepID=Q15VG3_PSEA6
Length = 449
Score = 166 bits (420), Expect = 8e-40
Identities = 84/149 (56%), Positives = 106/149 (71%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
+ D V+SDLRM +DG+ LF EI + +PVI++TAHG+I DAV ATQ+GVF FLTKP
Sbjct: 52 QNFDAVLSDLRMPGLDGLSLFEEIMSLGKDLPVILMTAHGTIQDAVEATQRGVFGFLTKP 111
Query: 184 VDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 363
+D L + A+ QS + WRE I+TRS M +LL+QA VAQ DVSVL++G SG
Sbjct: 112 IDHTELRDLLAKAVSQSQGSQTSAWREQIITRSMQMEQLLDQAHRVAQRDVSVLVSGASG 171
Query: 364 TGKEIFAQAIHNASPRNSKPFIAINCGAL 450
TGKE+ A AIH AS R +KPF+AINCGAL
Sbjct: 172 TGKELLANAIHKASKRANKPFVAINCGAL 200
[80][TOP]
>UniRef100_Q3A786 Two component response regulator n=1 Tax=Pelobacter carbinolicus
DSM 2380 RepID=Q3A786_PELCD
Length = 451
Score = 166 bits (419), Expect = 1e-39
Identities = 87/151 (57%), Positives = 109/151 (72%), Gaps = 6/151 (3%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LVI+DLRM MDGM LF I+ Q +PVIILTAHGSIPDAV AT++GVFSFLTKP+D
Sbjct: 52 LVITDLRMAGMDGMALFDAIRTRQGSLPVIILTAHGSIPDAVEATRRGVFSFLTKPLDSK 111
Query: 196 ALYQAIDDALEQSAPATDER------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
AL + I AL + + ++ WR I+T+SP M LL +ARL A+SD +VLI G+
Sbjct: 112 ALLEEIQRALRIAGGSAEQESSEGMSWRSEIITKSPTMEDLLAKARLAAESDAAVLIRGE 171
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ A+AIH AS R KPF+A+NCGA+
Sbjct: 172 SGTGKELIARAIHRASARADKPFVAVNCGAI 202
[81][TOP]
>UniRef100_A0XYS2 Predicted DNA-binding response regulator in two-component system
n=1 Tax=Alteromonadales bacterium TW-7
RepID=A0XYS2_9GAMM
Length = 449
Score = 166 bits (419), Expect = 1e-39
Identities = 84/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D+VI+DLRMDEMDGM L ++Q P +PVI++TAHGSIPDAV AT+QG+F+F+TKPVDK
Sbjct: 54 DVVITDLRMDEMDGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPVDK 113
Query: 193 DALYQAIDDALEQSAPATDER-WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 369
D L+ ++ +A++ TDE + IVTRS ML LLEQ +L+ + V+VLI+G SGTG
Sbjct: 114 DELFDSLANAIDIHGVNTDEAPSKSNIVTRSGAMLHLLEQVKLLGPTHVNVLISGASGTG 173
Query: 370 KEIFAQAIHNASPRNSKPFIAINCGAL 450
KE+ AQAIH S ++ PF+AINCGA+
Sbjct: 174 KELLAQAIHQHSQVSNGPFVAINCGAV 200
[82][TOP]
>UniRef100_C6NU61 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus
caldus ATCC 51756 RepID=C6NU61_9GAMM
Length = 451
Score = 165 bits (418), Expect = 1e-39
Identities = 88/153 (57%), Positives = 108/153 (70%), Gaps = 5/153 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E LVI+DL+MDEMDGM L I++ P +PVIILTAHGSIPDA+ A QGVF+FLTKP
Sbjct: 46 EHPGLVITDLKMDEMDGMALLDAIRRDYPTLPVIILTAHGSIPDALVAADQGVFAFLTKP 105
Query: 184 VDKDALYQAIDDALEQSAPATDERWR-----EAIVTRSPLMLRLLEQARLVAQSDVSVLI 348
D L ++ A +A +T R E I+TRSP M +L+QARLVA SD SV I
Sbjct: 106 FDGKDLMAQVERAFNLTAASTGSRKTSDLGFERILTRSPRMQAVLDQARLVAASDASVFI 165
Query: 349 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGA 447
+G SGTGKE+ AQAIH +SPR +KPF+A+NCGA
Sbjct: 166 HGASGTGKELLAQAIHQSSPRRNKPFVAVNCGA 198
[83][TOP]
>UniRef100_A1TKI2 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Acidovorax citrulli AAC00-1
RepID=A1TKI2_ACIAC
Length = 471
Score = 165 bits (417), Expect = 2e-39
Identities = 85/150 (56%), Positives = 108/150 (72%), Gaps = 5/150 (3%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LV+SD+R+ DG+ LF E++ P +PVI+LTAHG+IPDAV AT +GVF++LTKP D
Sbjct: 60 LVLSDVRLPGRDGLALFDEVRSRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKPYDAK 119
Query: 196 ALYQAIDDALEQSAPAT-----DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
L I AL SAPAT D WR IV+RS M LL +AR+VAQSD SVL+ G S
Sbjct: 120 DLLDKIAQALALSAPATQTPQADSTWRAEIVSRSNRMADLLAEARMVAQSDASVLLLGDS 179
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A+AIH ASPR ++PF+A+NCGA+
Sbjct: 180 GTGKELLARAIHRASPRAARPFVAVNCGAI 209
[84][TOP]
>UniRef100_Q3JCZ8 Two component, sigma54 specific, transcriptional regulator, Fis
family n=2 Tax=Nitrosococcus oceani RepID=Q3JCZ8_NITOC
Length = 456
Score = 164 bits (416), Expect = 2e-39
Identities = 87/150 (58%), Positives = 105/150 (70%), Gaps = 6/150 (4%)
Frame = +1
Query: 19 VISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDA 198
VI+DLRM MDGM L I + P +PVIILTAHGSIPDAV AT+ GVF+FLTKP +
Sbjct: 55 VITDLRMGGMDGMALADCIHRKNPALPVIILTAHGSIPDAVQATKNGVFAFLTKPYNSRE 114
Query: 199 LYQAIDDALEQSA------PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
L ++ AL S T E WRE IVTRSPLM LL QARLVA+S+ S+ + G S
Sbjct: 115 LLSQLEKALRVSGICRDLEETTPESWREEIVTRSPLMEDLLSQARLVAESEASICLRGDS 174
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A+AIH ASPR+ +PFIA+NC A+
Sbjct: 175 GTGKELLAKAIHKASPRSKQPFIAVNCAAI 204
[85][TOP]
>UniRef100_C5CNK0 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Variovorax paradoxus S110
RepID=C5CNK0_VARPS
Length = 462
Score = 164 bits (415), Expect = 3e-39
Identities = 86/155 (55%), Positives = 108/155 (69%), Gaps = 6/155 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E LV+SD+R+ DG+QLF EI+K P +PVI+LTAHG+IPDAV AT +GVF++LTKP
Sbjct: 48 EHPQLVLSDVRLPGRDGLQLFDEIRKRHPSLPVILLTAHGTIPDAVEATARGVFTYLTKP 107
Query: 184 VDKDALYQAIDDALEQSAPAT------DERWREAIVTRSPLMLRLLEQARLVAQSDVSVL 345
D L I AL APA+ DE WR IV+RS M LL +AR+VA+SD SVL
Sbjct: 108 YDGRELLDKIAQALALGAPASTPAKAGDESWRAEIVSRSNRMSELLAEARMVAKSDASVL 167
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ G SG GKE+ A+AIH AS R KPF+A+NCGA+
Sbjct: 168 LRGDSGAGKELLARAIHRASARADKPFVAVNCGAI 202
[86][TOP]
>UniRef100_A4BPD3 Two component transpcriptional regulator, fis family protein n=1
Tax=Nitrococcus mobilis Nb-231 RepID=A4BPD3_9GAMM
Length = 452
Score = 164 bits (415), Expect = 3e-39
Identities = 85/152 (55%), Positives = 107/152 (70%), Gaps = 7/152 (4%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LVI+DLRMD MDGM LF + K P +PVIILTAHGSIPDAV ATQ+GVF F+TKP +
Sbjct: 51 LVITDLRMDGMDGMTLFQNLHKQHPTLPVIILTAHGSIPDAVEATQKGVFGFITKPFEAP 110
Query: 196 ALYQAIDDALEQS-------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLING 354
AL Q ++ AL S A WR I++RSPLM +L++A+L+A S+ SV I G
Sbjct: 111 ALLQQVESALRLSGIVEPDTAGKQTNTWRAEIISRSPLMEDVLQRAKLIAPSEASVFIQG 170
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+SGTGKE+ A+AIHN S + PFIA+NCGA+
Sbjct: 171 ESGTGKELLAKAIHNTSRCSKGPFIAVNCGAI 202
[87][TOP]
>UniRef100_C4ZKD3 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Thauera sp. MZ1T
RepID=C4ZKD3_THASP
Length = 475
Score = 164 bits (414), Expect = 4e-39
Identities = 85/163 (52%), Positives = 112/163 (68%), Gaps = 14/163 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+ DLV+SD+R+ + DG+ LF +I++ P +PVI+LTAHG+IPDAV AT GV +LTKP
Sbjct: 58 ERFDLVVSDVRLPDGDGLALFEDIRRQHPALPVILLTAHGTIPDAVEATALGVAGYLTKP 117
Query: 184 VDKDALYQAIDDALEQSAP--------------ATDERWREAIVTRSPLMLRLLEQARLV 321
D AL Q I AL+++ P A D WR AI++RS M +L++ARLV
Sbjct: 118 FDSQALLQGIRQALQRAGPTHARSGLRADAPGSAGDTAWRAAILSRSSRMQAVLDEARLV 177
Query: 322 AQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
A +D SVLI G SGTGKE+ A+AIH ASPR + PF+AINCGA+
Sbjct: 178 AAADASVLIRGDSGTGKELLARAIHLASPRAAAPFVAINCGAI 220
[88][TOP]
>UniRef100_Q5P7S6 Probable two-component transcriptional regulator n=1
Tax=Aromatoleum aromaticum EbN1 RepID=Q5P7S6_AZOSE
Length = 467
Score = 163 bits (412), Expect = 6e-39
Identities = 82/155 (52%), Positives = 108/155 (69%), Gaps = 6/155 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+ LV+SD+R+ + DG+ LF EI++ P +PVI+LTAHGSIPDAV AT +GVF +LTKP
Sbjct: 55 ERFSLVVSDVRLPDRDGLALFEEIRRTCPVLPVILLTAHGSIPDAVEATSRGVFGYLTKP 114
Query: 184 VDKDALYQAIDDALEQSAP------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVL 345
D AL + I AL+ P A D WR+ I++ S M +L++ARLVA SD S+L
Sbjct: 115 FDSQALLEKISQALQVGGPIHVGNDADDGDWRDEIISHSNRMATVLDEARLVAASDASIL 174
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
I G SGTGKE+ A+AIH S R + PF+AINCGA+
Sbjct: 175 IRGDSGTGKELLARAIHRISSRANAPFVAINCGAI 209
[89][TOP]
>UniRef100_C7RUA1 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Candidatus Accumulibacter phosphatis
clade IIA str. UW-1 RepID=C7RUA1_9PROT
Length = 464
Score = 163 bits (412), Expect = 6e-39
Identities = 85/155 (54%), Positives = 107/155 (69%), Gaps = 6/155 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E LV+SD+R+ DG+ LF EI+ +P +PVI+LTAHG+IPDAV A +GVF +LTKP
Sbjct: 52 EPPQLVVSDIRLPGQDGLALFDEIRSTRPTLPVILLTAHGTIPDAVQAMSRGVFGYLTKP 111
Query: 184 VDKDALYQAIDDALEQSAPA------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVL 345
D L + I+ AL+ S A + E WRE IV RS M LLE+AR+VA SD SVL
Sbjct: 112 FDSKVLLEKIEQALQLSPAAAGHETGSGEAWREGIVFRSSRMAELLEEARVVAASDASVL 171
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
I G+SGTGKE+ A+AIH AS R PF+AINCGA+
Sbjct: 172 IRGESGTGKEVLARAIHRASRRARAPFVAINCGAI 206
[90][TOP]
>UniRef100_Q47F30 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Dechloromonas aromatica RCB
RepID=Q47F30_DECAR
Length = 469
Score = 162 bits (411), Expect = 8e-39
Identities = 81/157 (51%), Positives = 108/157 (68%), Gaps = 12/157 (7%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LV+SD+R+ +DG+ LF EI++ +P +PVI+LTAHG+IPDAV AT +GVF +LTKP D
Sbjct: 57 LVVSDVRLPGLDGLSLFEEIRRTRPTLPVILLTAHGNIPDAVDATSRGVFGYLTKPFDSQ 116
Query: 196 ALYQAIDDALEQSAPAT------------DERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
L + ID AL+ SAP D+ W ++ RS M L+ +AR++A SD S
Sbjct: 117 ILLEKIDRALQLSAPTPHVGELPPVTAEGDDAWMAGVIFRSSRMAELMAEARMIAASDAS 176
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI G+SG+GKE+ A+AIH ASPR PFIAINCGA+
Sbjct: 177 VLIRGESGSGKEVLARAIHRASPRAKGPFIAINCGAI 213
[91][TOP]
>UniRef100_Q12EH3 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Polaromonas sp. JS666 RepID=Q12EH3_POLSJ
Length = 466
Score = 162 bits (411), Expect = 8e-39
Identities = 81/155 (52%), Positives = 110/155 (70%), Gaps = 6/155 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+ LV+SD+++ DG+ LF +I+ P +PVI+LTAHG+IPDAV AT++GVF++LTKP
Sbjct: 58 ERPQLVLSDVQLPGRDGLALFDDIRARHPSLPVILLTAHGTIPDAVEATERGVFTYLTKP 117
Query: 184 VDKDALYQAIDDALEQSAPA------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVL 345
D L I AL SAP+ + E W+ I++RS M L +AR+++QSD SVL
Sbjct: 118 FDGKGLLDKIAQALALSAPSHPAKRGSPEAWQHQIISRSSRMAEALAEARMISQSDASVL 177
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ G+SGTGKE+ AQAIH ASPR KPFIA+NCGA+
Sbjct: 178 LRGESGTGKELLAQAIHQASPRAGKPFIAVNCGAI 212
[92][TOP]
>UniRef100_C7I3T5 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Thiomonas intermedia K12
RepID=C7I3T5_THIIN
Length = 456
Score = 162 bits (409), Expect = 1e-38
Identities = 86/150 (57%), Positives = 109/150 (72%), Gaps = 6/150 (4%)
Frame = +1
Query: 19 VISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDA 198
VI+DLRM+ MDG+ LF I+ P +PVIILTAHG+IPDAV ATQ+GVF FLTKP +
Sbjct: 50 VITDLRMEGMDGLSLFEHIRAQDPSLPVIILTAHGTIPDAVDATQRGVFGFLTKPFEARE 109
Query: 199 LYQAIDDAL-----EQSAPAT-DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
L ++ A+ + +AP+ DE WR I+T SP ML LL +A LVA+S+ SVLI G+S
Sbjct: 110 LLALLERAIALQPKQAAAPSPKDEAWRADILTASPRMLALLSEAGLVARSEASVLIRGES 169
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A+AIH ASPR + PFIAINC A+
Sbjct: 170 GTGKEMLARAIHRASPRQAGPFIAINCAAI 199
[93][TOP]
>UniRef100_Q21UQ5 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Rhodoferax ferrireducens T118
RepID=Q21UQ5_RHOFD
Length = 477
Score = 161 bits (407), Expect = 2e-38
Identities = 82/155 (52%), Positives = 109/155 (70%), Gaps = 6/155 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+ LV+SD+R+ DG+ LF +I+ P +PVI+LTAHG+IPDAV AT++GVFS+LTKP
Sbjct: 63 ERPQLVLSDVRLPGRDGLALFDDIRAQHPSLPVILLTAHGTIPDAVQATERGVFSYLTKP 122
Query: 184 VDKDALYQAIDDALEQSAPA------TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVL 345
D +L I AL SAPA + + W+ IV+RS M +L +A +VAQSD SVL
Sbjct: 123 FDGKSLLDKIAQALSLSAPAHSVKPGSPQAWQNQIVSRSSRMAEVLAEAHMVAQSDASVL 182
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ G+SGTGKE+ A+AIH A R KPFIA+NCGA+
Sbjct: 183 LRGESGTGKELLARAIHQAGSRAGKPFIAVNCGAI 217
[94][TOP]
>UniRef100_A4SHS5 Two-component system response regulator n=1 Tax=Aeromonas
salmonicida subsp. salmonicida A449 RepID=A4SHS5_AERS4
Length = 426
Score = 161 bits (407), Expect = 2e-38
Identities = 80/150 (53%), Positives = 104/150 (69%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+++ DLV+SDLRM MDG+ LF IQ G+PVII+TAHG+IPDA+ AT+ GVFSFLTK
Sbjct: 43 QQRADLVLSDLRMAGMDGLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTK 102
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+DKD L+ I+ AL + P + W+ I+TR+P M +LL QA +A +V VLI G S
Sbjct: 103 PIDKDELFATIEHALSLTRPKQQQEWQSLILTRNPQMEQLLIQANSIAGMEVPVLIMGPS 162
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+GK + QA+H AS R KP INC AL
Sbjct: 163 GSGKGVMTQALHQASSRRDKPLHVINCAAL 192
[95][TOP]
>UniRef100_Q3IK72 Putative response regulator in two-component regulatory system n=1
Tax=Pseudoalteromonas haloplanktis TAC125
RepID=Q3IK72_PSEHT
Length = 449
Score = 160 bits (406), Expect = 3e-38
Identities = 82/147 (55%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D V++DLRMDEMDGM L ++Q P +PVI++TAHGSIPDAV AT+QG+F+F+TKP+DK
Sbjct: 54 DAVVTDLRMDEMDGMALHRQLQSRYPALPVIMMTAHGSIPDAVEATKQGIFAFITKPIDK 113
Query: 193 DALYQAIDDALEQSAPATDERWREA-IVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 369
D L+ ++ A+E DE + IVTRS ML LLEQ +L+ + V+VLI+G SGTG
Sbjct: 114 DELFDSLAKAIEIHGVNADEIIPTSNIVTRSGAMLHLLEQVKLLGPTQVNVLISGASGTG 173
Query: 370 KEIFAQAIHNASPRNSKPFIAINCGAL 450
KE+ AQAIH S + PF+AINCGA+
Sbjct: 174 KELLAQAIHQHSHVSKGPFVAINCGAV 200
[96][TOP]
>UniRef100_B8GLL6 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp.
HL-EbGR7 RepID=B8GLL6_THISH
Length = 452
Score = 160 bits (405), Expect = 4e-38
Identities = 82/153 (53%), Positives = 104/153 (67%), Gaps = 8/153 (5%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LVI+DLRM MDGM LF + K QP +P+IILTAHG+IPDAV AT++GVF FLTKP D
Sbjct: 51 LVITDLRMGGMDGMTLFETVHKDQPALPIIILTAHGTIPDAVEATRRGVFGFLTKPFDSQ 110
Query: 196 ALYQAIDDALEQSAP--------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLIN 351
AL + AL + P A WRE I++RS +M L QARLVA S+ +VLI
Sbjct: 111 ALLDYVSQALRLAGPGQEAGGDEAVAGDWREGIISRSAVMEEALRQARLVADSETNVLIQ 170
Query: 352 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+SGTGKE+ A+A+H AS R +PF+A+NC A+
Sbjct: 171 SESGTGKELLARALHRASRRAGRPFVAVNCSAI 203
[97][TOP]
>UniRef100_Q607P6 Sigma-54 dependent DNA-binding response regulator n=1
Tax=Methylococcus capsulatus RepID=Q607P6_METCA
Length = 460
Score = 159 bits (402), Expect = 9e-38
Identities = 81/149 (54%), Positives = 108/149 (72%), Gaps = 4/149 (2%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V++DLRMD MDGM LF + + P +PVII+TAHG+I DAVAAT++GVF F+TKPVDK+
Sbjct: 52 VVVTDLRMDGMDGMALFDALNERHPTLPVIIMTAHGTINDAVAATRRGVFGFVTKPVDKN 111
Query: 196 ALYQAIDDALEQSAPAT----DERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 363
L + I +A+ + T E WR IVT+SPLM +L QA+ VAQ+ SV I G+SG
Sbjct: 112 ELIEHISEAIRINGNTTVIPDKEEWRARIVTQSPLMEEVLGQAQRVAQNRASVFIGGESG 171
Query: 364 TGKEIFAQAIHNASPRNSKPFIAINCGAL 450
TGKE+ A+AIH+ SPR PF+A+NC A+
Sbjct: 172 TGKELLARAIHDLSPRAKGPFVAVNCSAI 200
[98][TOP]
>UniRef100_A1VSP5 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Polaromonas naphthalenivorans CJ2
RepID=A1VSP5_POLNA
Length = 462
Score = 159 bits (402), Expect = 9e-38
Identities = 82/151 (54%), Positives = 109/151 (72%), Gaps = 6/151 (3%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LV+SD+R+ DG+ LF +I+ P +PVI+LTAHG+IPDAV AT++GVF++LTKP D
Sbjct: 56 LVLSDVRLPGKDGLALFDDIRARHPSLPVILLTAHGTIPDAVEATERGVFTYLTKPFDGK 115
Query: 196 ALYQAIDDALEQSAP------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
AL I +AL SAP + E W+ I++RS M +L +AR+VA SD SVL+ G+
Sbjct: 116 ALEGKIAEALLLSAPVNPARQGSPEAWQTRIISRSSRMAEVLAEARMVATSDASVLLRGE 175
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ AQAIH AS R +KPFIA+NCGA+
Sbjct: 176 SGTGKELLAQAIHQASARAAKPFIAVNCGAI 206
[99][TOP]
>UniRef100_A0KQD3 Transcriptional regulatory protein ZraR n=1 Tax=Aeromonas
hydrophila subsp. hydrophila ATCC 7966
RepID=A0KQD3_AERHH
Length = 426
Score = 159 bits (402), Expect = 9e-38
Identities = 80/150 (53%), Positives = 104/150 (69%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+++ DLV+SDLRM MDG+ LF IQ G+PVII+TAHG+IPDA+ AT+ GVFSFLTK
Sbjct: 43 QQRADLVLSDLRMAGMDGLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTK 102
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P+DKD L+ I+ AL + P + W+ I+TR+P M +LL QA +A +V VLI G S
Sbjct: 103 PIDKDELFATIEHALSLTRPKQRQDWQSLILTRNPQMEQLLIQAGSIAAMEVPVLIMGPS 162
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+GK + QA+H AS R KP INC AL
Sbjct: 163 GSGKGVMTQALHQASSRRDKPLHVINCAAL 192
[100][TOP]
>UniRef100_A1K981 Putative two component transcriptional regulator n=1 Tax=Azoarcus
sp. BH72 RepID=A1K981_AZOSB
Length = 465
Score = 158 bits (400), Expect = 2e-37
Identities = 80/157 (50%), Positives = 110/157 (70%), Gaps = 8/157 (5%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+VDLV+SD+R+ + DG+ LF E++++ P +PVI+LTAHG+IPDA+ AT +GV +LTKP
Sbjct: 49 ERVDLVLSDVRLPDRDGLALFEEVRRLYPALPVILLTAHGTIPDAIDATSRGVAGYLTKP 108
Query: 184 VDKDALYQAIDDALEQSAPA--------TDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
D L ++ AL +APA T+ E +++RS M L ++ RLVA SD S
Sbjct: 109 YDSQDLLDNVERALHLAAPAGDTGSGTTTEAYAFEGMLSRSTRMHALFDETRLVAASDAS 168
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI G+SGTGKE+ A AIH ASPR S PF+A+NCGA+
Sbjct: 169 VLIRGESGTGKEVLAHAIHAASPRASAPFVAVNCGAI 205
[101][TOP]
>UniRef100_B5EPW7 Two component, sigma54 specific, transcriptional regulator, Fis
family n=2 Tax=Acidithiobacillus ferrooxidans
RepID=B5EPW7_ACIF5
Length = 457
Score = 157 bits (397), Expect = 4e-37
Identities = 86/155 (55%), Positives = 109/155 (70%), Gaps = 7/155 (4%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E LVI+DL+MDEMDGM L I++ P +PVIILTAHGSIPDA+ A QGVF+FLTKP
Sbjct: 46 EHPSLVITDLKMDEMDGMALLDAIRRDYPTLPVIILTAHGSIPDALLAADQGVFAFLTKP 105
Query: 184 VDKDALYQAIDDALEQSA---PATDERWREA----IVTRSPLMLRLLEQARLVAQSDVSV 342
D L ++ A +A P++ ++ R++ I+TRSP M +L+QARLVA SD SV
Sbjct: 106 FDGKDLMAQVERAFNLTAAVPPSSGKKGRDSSWDRILTRSPKMQTVLDQARLVAASDASV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGA 447
I+G SGTGKE+ AQAIH ASPR+ FIA+NC A
Sbjct: 166 FIHGASGTGKELLAQAIHQASPRHGHAFIAVNCAA 200
[102][TOP]
>UniRef100_Q47WA0 Sigma-54 dependent response regulator n=1 Tax=Colwellia
psychrerythraea 34H RepID=Q47WA0_COLP3
Length = 457
Score = 156 bits (395), Expect = 6e-37
Identities = 80/150 (53%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+VISDLRM+ MDGM LF +I+ P +PV+I+TAHG+IPDA+ AT+QGVFSFLTKP +
Sbjct: 59 VVISDLRMEGMDGMALFEQIRIQHPNIPVVIMTAHGTIPDAINATKQGVFSFLTKPFESQ 118
Query: 196 ALYQAIDDAL-----EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
L ++ A+ + E WR I++RS +M LL+QA+ VA SD SVLI+ QS
Sbjct: 119 ELLDTVEQAIRLQPSQNEKTGETELWRNNIISRSTVMTSLLQQAKQVANSDFSVLIHSQS 178
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A+AIH AS R +K F AINC A+
Sbjct: 179 GTGKELLAKAIHQASNRKNKVFTAINCAAI 208
[103][TOP]
>UniRef100_C5T390 Putative two component, sigma54 specific, transcriptional
regulator, Fis family n=1 Tax=Acidovorax delafieldii 2AN
RepID=C5T390_ACIDE
Length = 470
Score = 156 bits (395), Expect = 6e-37
Identities = 82/150 (54%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LV+SD+R+ +G+ LF E++ P +PVI+LTAHG+IPDAV AT +GVF++LTKP D
Sbjct: 59 LVLSDVRLPGRNGLALFDEVRARHPSLPVILLTAHGTIPDAVEATSRGVFTYLTKPYDGK 118
Query: 196 ALYQAIDDALEQSAPATD-----ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
L I AL SAPA E WR IV+RS M LL +A +VAQSD SVL+ G S
Sbjct: 119 ELLAKIAQALALSAPAATHAHAHEAWRADIVSRSSRMTDLLAEAYMVAQSDASVLLLGDS 178
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+GKE+ AQAIH ASPR +PF+A+NCGA+
Sbjct: 179 GSGKELLAQAIHRASPRAHRPFVAVNCGAI 208
[104][TOP]
>UniRef100_A1WWP5 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Halorhodospira halophila SL1
RepID=A1WWP5_HALHL
Length = 457
Score = 154 bits (388), Expect = 4e-36
Identities = 82/155 (52%), Positives = 106/155 (68%), Gaps = 5/155 (3%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R+ D VI+DLRM+ MDG+ LF +++ P +PVIILTAHGSI DAV AT++GV FLTK
Sbjct: 46 RQPADAVITDLRMEGMDGLALFDAVRERWPALPVIILTAHGSIQDAVEATRRGVHEFLTK 105
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREA-----IVTRSPLMLRLLEQARLVAQSDVSVL 345
P D L + ++ AL T + REA +VTRSP M +LE+A LVA SD +VL
Sbjct: 106 PFDPPELLEQLEKALTARGGQTSDTAREAGRRHGLVTRSPRMEEVLERALLVADSDANVL 165
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
I G SG+GKEI A+A+H SPR+ PFI +NCGA+
Sbjct: 166 IQGASGSGKEIVARAVHGNSPRSQGPFIPVNCGAI 200
[105][TOP]
>UniRef100_C5V7Q7 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Gallionella ferruginea ES-2
RepID=C5V7Q7_9PROT
Length = 456
Score = 153 bits (386), Expect = 7e-36
Identities = 80/154 (51%), Positives = 107/154 (69%), Gaps = 5/154 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+ LVI+D+RM MDG+ LF I + P +PVI+LTAHG+IPDAV A Q+G+F +LTKP
Sbjct: 54 ERPQLVITDMRMQGMDGIALFERIHRSVPTLPVIMLTAHGTIPDAVNAMQRGLFGYLTKP 113
Query: 184 VDKDALYQAIDDALE-----QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLI 348
D L + ++ A + P T + WR I+T+SP+M +L +ARLVA+ D SVLI
Sbjct: 114 FDSAVLLEHVERAFQFIPAALRNPETGD-WRADIITQSPVMEDVLTKARLVAEGDASVLI 172
Query: 349 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G SGTGKE+ A AIHNAS R+ +PF+AINC A+
Sbjct: 173 RGGSGTGKELLAHAIHNASHRSQRPFVAINCAAI 206
[106][TOP]
>UniRef100_Q31DJ8 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Thiomicrospira crunogena XCL-2
RepID=Q31DJ8_THICR
Length = 456
Score = 152 bits (385), Expect = 9e-36
Identities = 80/149 (53%), Positives = 106/149 (71%), Gaps = 4/149 (2%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LV++DLRM EMDG+ L+ +I + P +PVII+TAHG+I +AV AT GVF F+TKP++
Sbjct: 61 LVLTDLRMSEMDGLALYEQIHQQSPTLPVIIMTAHGTIKEAVEATSLGVFGFITKPINHA 120
Query: 196 ALYQAIDDALEQSAP--ATDE--RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 363
L Q I AL P AT++ +WR I+ +S +M LL+ VAQSD+SV I G+SG
Sbjct: 121 ELTQKIQQALTVHHPVMATEKQAKWRHNIIGQSQVMEALLQDLYHVAQSDISVYIQGESG 180
Query: 364 TGKEIFAQAIHNASPRNSKPFIAINCGAL 450
TGKE+ AQAIH ASPR+ KPFIA+NC A+
Sbjct: 181 TGKELIAQAIHAASPRHKKPFIAVNCSAI 209
[107][TOP]
>UniRef100_Q2Y9V7 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Nitrosospira multiformis ATCC 25196
RepID=Q2Y9V7_NITMU
Length = 453
Score = 151 bits (382), Expect = 2e-35
Identities = 80/151 (52%), Positives = 103/151 (68%), Gaps = 6/151 (3%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LVISD++M MDGM LF +I + P +PVIILTAHG+IPDAV A Q+GVF +L KP D
Sbjct: 52 LVISDMQMSGMDGMALFEQIHRSLPTLPVIILTAHGTIPDAVTAVQRGVFGYLAKPFDSK 111
Query: 196 ALYQAIDDALEQSAPATDER------WREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
L I AL+ A ++ WR+ I+T+S +M LL +A LVA+ D SVLI G+
Sbjct: 112 TLLANISQALKFVPGAVSQKELSQAPWRKNIITQSAVMEDLLTRAGLVAEGDASVLIYGE 171
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SG GKE+FA AIH+AS R+ PF+AINC A+
Sbjct: 172 SGVGKELFAHAIHDASKRSDHPFVAINCAAI 202
[108][TOP]
>UniRef100_Q0AJP5 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Nitrosomonas eutropha C91
RepID=Q0AJP5_NITEC
Length = 455
Score = 149 bits (375), Expect = 1e-34
Identities = 81/153 (52%), Positives = 105/153 (68%), Gaps = 8/153 (5%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LVISD++M MDGM LF I + P +PVIILTA G+IPDAVAATQ+G+F +LTKP +
Sbjct: 51 LVISDIQMSGMDGMALFEHIHRHIPTLPVIILTAFGTIPDAVAATQRGIFGYLTKPYNPK 110
Query: 196 ALYQAIDDALEQSAPATD--------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLIN 351
L ++ A++ APA D WR+AI+TRS LM LL + VAQ + SVL++
Sbjct: 111 ILLSQVERAID-LAPAVDTISSKVPAPTWRKAIITRSALMEDLLAKVDRVAQGNASVLLS 169
Query: 352 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+SG GKE+FA+AIH AS R +PFI INC A+
Sbjct: 170 GESGVGKELFARAIHQASKRCEQPFITINCAAI 202
[109][TOP]
>UniRef100_Q7NQC0 Probable two-component transcriptional regulator n=1
Tax=Chromobacterium violaceum RepID=Q7NQC0_CHRVO
Length = 446
Score = 147 bits (371), Expect = 4e-34
Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 2/150 (1%)
Frame = +1
Query: 7 KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV 186
+ DL+++D R+ MDG+QLF ++ P +PVI+ TAHG++PDAV A +GVF +L KP
Sbjct: 48 RADLLLTDWRLPGMDGLQLFETARRRYPTLPVILFTAHGTVPDAVEAVSRGVFCYLEKPF 107
Query: 187 DKDALYQAIDDALEQSAP--ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
D L + L SA A + WR IV+R P M LL +AR+VA +D SVL+ G+S
Sbjct: 108 DGQLLLDKVAQGLALSAGDGAAGDDWRAGIVSRGPAMEELLSEARMVAATDASVLLQGES 167
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+GKE+ A+AIH AS R +PF+A+NCGA+
Sbjct: 168 GSGKEVLARAIHQASRRAGRPFVAVNCGAI 197
[110][TOP]
>UniRef100_A4BIZ7 Putative transcriptional regulator of two-component regulator
protein (EBP familiiy) n=1 Tax=Reinekea blandensis
MED297 RepID=A4BIZ7_9GAMM
Length = 455
Score = 144 bits (364), Expect = 2e-33
Identities = 76/149 (51%), Positives = 99/149 (66%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
++V +V+SDLRM DG+ L I P +PVII+TAHG+I DAV AT+ G FLTKP
Sbjct: 57 QRVSMVLSDLRMPGEDGLMLLDFINAEFPTIPVIIMTAHGTIHDAVEATENGALGFLTKP 116
Query: 184 VDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 363
+D L + +A Q + AT W+ IV +S M +L+EQ VA D+S++I G SG
Sbjct: 117 IDHQQLRSTLTNACAQISNATGGDWQSDIVYQSQKMHQLMEQVGQVAPRDISLMITGASG 176
Query: 364 TGKEIFAQAIHNASPRNSKPFIAINCGAL 450
TGKE+ AQAIH AS R +KPFIA+NCGAL
Sbjct: 177 TGKELMAQAIHKASCRANKPFIAVNCGAL 205
[111][TOP]
>UniRef100_Q82Y70 Putative transcriptional regulator of two-component regulator
protein n=1 Tax=Nitrosomonas europaea RepID=Q82Y70_NITEU
Length = 455
Score = 144 bits (363), Expect = 3e-33
Identities = 79/153 (51%), Positives = 103/153 (67%), Gaps = 8/153 (5%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
LVISD++M +DGM LF I + P +PVIILTA+G+IPDAVAATQ+G+F +LTKP D
Sbjct: 51 LVISDMQMGGLDGMALFEYIHRNIPTLPVIILTAYGTIPDAVAATQRGIFGYLTKPYDPK 110
Query: 196 ALYQAIDDALEQSAPATD--------ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLIN 351
L ++ AL APA + WR+ IVTRS +M LL + VAQ D SVL++
Sbjct: 111 ILLGQVERAL-NLAPAVETLSSTTPVSSWRKTIVTRSAVMEDLLAKVGRVAQGDASVLLS 169
Query: 352 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+SG GKE+ A+AIH AS R +PF+ INC A+
Sbjct: 170 GESGVGKELLARAIHQASRRCDQPFVTINCAAI 202
[112][TOP]
>UniRef100_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus
caldus ATCC 51756 RepID=C6NUI1_9GAMM
Length = 466
Score = 137 bits (345), Expect = 4e-31
Identities = 75/159 (47%), Positives = 102/159 (64%), Gaps = 9/159 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE DLVI+DLRM EMDGM++ +Q++ P +PVI+LTAHGSIP+AVAA + F +L K
Sbjct: 52 RELPDLVITDLRMPEMDGMEVLEAVQELDPELPVILLTAHGSIPNAVAAMRAQAFGYLGK 111
Query: 181 PVDKDALYQAIDDALEQ-SAPATDERWR--------EAIVTRSPLMLRLLEQARLVAQSD 333
P + L + AL Q A R R + I+ RSP+M +L+++ VA S
Sbjct: 112 PFSSEELESLVAAALRQRQASRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVAHSQ 171
Query: 334 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SV + G+SG+GKE A+AIH ASPR PF+A+NCGA+
Sbjct: 172 TSVFLTGESGSGKERVARAIHAASPRAQGPFVAVNCGAI 210
[113][TOP]
>UniRef100_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis
family n=2 Tax=Acidithiobacillus ferrooxidans
RepID=B5EMI3_ACIF5
Length = 461
Score = 132 bits (333), Expect = 9e-30
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 9/155 (5%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DLVI+DLRM MDGM + +Q + P +PVI+LTAHGSIP+AVAA + F +L+KP
Sbjct: 51 DLVITDLRMPGMDGMAVLETVQALDPDLPVILLTAHGSIPNAVAAMRAQAFGYLSKPFSN 110
Query: 193 DALYQAIDDALEQSAPATDERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVL 345
+ L + AL Q + R A I+ RSP M L+++ VA S SV
Sbjct: 111 EELQELTTAALAQRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELACVANSKASVF 170
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
++G+SG+GKE A+AIH+ASPR PF+A+NCGA+
Sbjct: 171 LSGESGSGKERVARAIHDASPRRDGPFVAVNCGAI 205
[114][TOP]
>UniRef100_B8FFG3 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Desulfatibacillum alkenivorans AK-01
RepID=B8FFG3_DESAA
Length = 463
Score = 131 bits (330), Expect = 2e-29
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 10/157 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+E+ DL+++D++M +MDG++L ++Q P ++++T HGSI AV A Q+G + F+TK
Sbjct: 45 QERFDLILADIKMPKMDGLELLEKVQAQYPDQTMVMMTGHGSIDVAVQAIQKGAYDFVTK 104
Query: 181 PVDKDALYQAIDDALEQSAPATDE----RW------REAIVTRSPLMLRLLEQARLVAQS 330
P D +AL ++ ALE+S + RW E +V +SP M + + + V+Q+
Sbjct: 105 PFDHEALVVRLEKALERSKLIAENRRLVRWCGQQRAFENMVGQSPAMQTVFDTIKTVSQT 164
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINC 441
D++VLI G+SGTGKE+ A+AIH+ SPR+S PF+AINC
Sbjct: 165 DMTVLITGESGTGKELAARAIHSLSPRSSGPFVAINC 201
[115][TOP]
>UniRef100_C6N0A2 Sigma 54-dependent response regulator n=1 Tax=Legionella
drancourtii LLAP12 RepID=C6N0A2_9GAMM
Length = 437
Score = 129 bits (324), Expect = 1e-28
Identities = 68/146 (46%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V+SD+RMDE+DG QL +IQ+ +PG+PVI++TA+GS+ DAV A ++G +L KP
Sbjct: 48 VVLSDIRMDELDGNQLLDQIQRKRPGLPVILMTAYGSVQDAVIAMRRGAVDYLQKPFSAQ 107
Query: 196 ALYQAIDDALEQSAPA-TDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 372
L + I+ ++ A T E + + P LL A VAQSDV V+I+G+SGTGK
Sbjct: 108 VLIEKINQFIKVEFDADTGEP-----IAQDPKSQALLSMALKVAQSDVGVMISGESGTGK 162
Query: 373 EIFAQAIHNASPRNSKPFIAINCGAL 450
E+ A IH+ SPR +PFIAINC A+
Sbjct: 163 EVLAHFIHDHSPRRKQPFIAINCAAI 188
[116][TOP]
>UniRef100_C4CU83 Response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains n=1 Tax=Spirosoma linguale DSM 74
RepID=C4CU83_9SPHI
Length = 446
Score = 129 bits (323), Expect = 1e-28
Identities = 68/160 (42%), Positives = 104/160 (65%), Gaps = 10/160 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE+V LVISD+++ + +G++L +I+++ P +I+LTA+G+I D V A + G F ++TK
Sbjct: 43 REEVQLVISDVKLPDKNGIELSTQIKQLYPATEIIVLTAYGTISDGVTAIKNGAFDYITK 102
Query: 181 PVDKDALYQAIDDALE---------QSAPATDERWR-EAIVTRSPLMLRLLEQARLVAQS 330
D D + + A+E Q +R+ E I+ RS + + +E AR VA +
Sbjct: 103 GDDNDRIIPLVSRAVEKANLQFRIRQLEQQVSQRYGFERIIGRSRPVHQAIELARKVAVT 162
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
D +VL+ G++GTGKE+FAQAIH ASPR + PF+AINCGAL
Sbjct: 163 DTTVLLTGETGTGKEVFAQAIHQASPRRTGPFVAINCGAL 202
[117][TOP]
>UniRef100_Q5ZUN1 Sigma 54-dependent response regulator n=2 Tax=Legionella
pneumophila RepID=Q5ZUN1_LEGPH
Length = 453
Score = 127 bits (318), Expect = 5e-28
Identities = 66/145 (45%), Positives = 92/145 (63%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V++D+RMD++DG QL EIQK +PG+PVI++TA+GS+ DAV A + G +L KP
Sbjct: 64 VVLTDIRMDKLDGNQLLNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFSAQ 123
Query: 196 ALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 375
L + I ++ D + R P LL A VAQSDV V+I+G+SGTGKE
Sbjct: 124 VLIEKIKQYIKTDLSEED----NDPIARDPKSQALLTMALRVAQSDVGVMISGESGTGKE 179
Query: 376 IFAQAIHNASPRNSKPFIAINCGAL 450
+ A IH+ S R+ +PFIAINC A+
Sbjct: 180 VLAHFIHDHSYRSKQPFIAINCAAI 204
[118][TOP]
>UniRef100_Q5X4F0 Putative uncharacterized protein fleR n=1 Tax=Legionella
pneumophila str. Paris RepID=Q5X4F0_LEGPA
Length = 437
Score = 127 bits (318), Expect = 5e-28
Identities = 66/145 (45%), Positives = 92/145 (63%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V++D+RMD++DG QL EIQK +PG+PVI++TA+GS+ DAV A + G +L KP
Sbjct: 48 VVLTDIRMDKLDGNQLLNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFSAQ 107
Query: 196 ALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 375
L + I ++ D + R P LL A VAQSDV V+I+G+SGTGKE
Sbjct: 108 VLIEKIKQYIKTDLSEED----NDPIARDPKSQALLTMALRVAQSDVGVMISGESGTGKE 163
Query: 376 IFAQAIHNASPRNSKPFIAINCGAL 450
+ A IH+ S R+ +PFIAINC A+
Sbjct: 164 VLAHFIHDHSYRSKQPFIAINCAAI 188
[119][TOP]
>UniRef100_Q5WVT5 Putative uncharacterized protein fleR n=1 Tax=Legionella
pneumophila str. Lens RepID=Q5WVT5_LEGPL
Length = 437
Score = 127 bits (318), Expect = 5e-28
Identities = 66/145 (45%), Positives = 92/145 (63%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V++D+RMD++DG QL EIQK +PG+PVI++TA+GS+ DAV A + G +L KP
Sbjct: 48 VVLTDIRMDKLDGNQLLNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFSAQ 107
Query: 196 ALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKE 375
L + I ++ D + R P LL A VAQSDV V+I+G+SGTGKE
Sbjct: 108 VLIEKIKQYIKTDLSEED----NDPIARDPKSQALLTMALRVAQSDVGVMISGESGTGKE 163
Query: 376 IFAQAIHNASPRNSKPFIAINCGAL 450
+ A IH+ S R+ +PFIAINC A+
Sbjct: 164 VLAHFIHDHSYRSKQPFIAINCAAI 188
[120][TOP]
>UniRef100_A4BFU5 Nitrogen regulation protein NR(I) n=1 Tax=Reinekea blandensis
MED297 RepID=A4BFU5_9GAMM
Length = 474
Score = 127 bits (318), Expect = 5e-28
Identities = 68/152 (44%), Positives = 95/152 (62%), Gaps = 6/152 (3%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D++ISD+RMD MDG++L IQ P +PVII+TAH + AVA+ Q G F +L KP D
Sbjct: 50 DVIISDVRMDGMDGLELLQRIQTEHPEIPVIIMTAHSDLDSAVASFQGGAFEYLPKPFDV 109
Query: 193 DALYQAIDDALEQSA---PATD---ERWREAIVTRSPLMLRLLEQARLVAQSDVSVLING 354
D +D ALE A PA + + + I+ +P M + ++QS+++VLING
Sbjct: 110 DEALALVDRALEHRAKQMPAQEVPVAQTQTEIIGEAPAMQEVFRAIGRLSQSNITVLING 169
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+SGTGKE+ AQA+H SPR PFIA+N A+
Sbjct: 170 ESGTGKELVAQALHRHSPRRDFPFIALNMAAI 201
[121][TOP]
>UniRef100_Q73L96 Sigma-54 dependent transcriptional regulator/response regulator n=1
Tax=Treponema denticola RepID=Q73L96_TREDE
Length = 473
Score = 126 bits (317), Expect = 7e-28
Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 10/159 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+++VDLVI+DL+M E+ G ++ E+ PG+PVI+LT HG++ AV A + G + FLTK
Sbjct: 44 KDEVDLVITDLKMPEISGEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTK 103
Query: 181 PVDKDALYQAIDDALEQSAPATDERWR----------EAIVTRSPLMLRLLEQARLVAQS 330
P+D + L+ + AL+ A R E I+ +SPLM ++ E + VA +
Sbjct: 104 PLDLERLFLLVKRALQNRALVLQNRALLHDIETKQSFENIIGKSPLMEKVFENIKKVAPT 163
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGA 447
SVLI G++G GKE+ A+AIHN S R KPF+ ++C +
Sbjct: 164 KASVLITGETGVGKELIARAIHNLSNRKDKPFVQVHCAS 202
[122][TOP]
>UniRef100_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Desulfurivibrio alkaliphilus AHT2
RepID=C8QYP0_9DELT
Length = 506
Score = 126 bits (317), Expect = 7e-28
Identities = 69/165 (41%), Positives = 101/165 (61%), Gaps = 16/165 (9%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E DLV++D+RM EMDG+ + +IQ V+PG+PV+I+T + ++ AV A +QG ++ KP
Sbjct: 49 EAPDLVVTDIRMPEMDGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKP 108
Query: 184 VDKDALYQAIDDALEQS------APA----------TDERWREAIVTRSPLMLRLLEQAR 315
+ + + I + Q APA TDE R ++ R LRLLE+AR
Sbjct: 109 FPVEVIEETIKKVMRQQPRPAAVAPAAETGSPPPGRTDEGSR-TVIGRDRHFLRLLERAR 167
Query: 316 LVAQSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VA S +VL+ G+SGTGKE+FA+ IH+ S R + PF+A+NC AL
Sbjct: 168 TVASSKATVLVLGESGTGKEVFARFIHHVSDRKAGPFVALNCAAL 212
[123][TOP]
>UniRef100_C0GNF4 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1
RepID=C0GNF4_9DELT
Length = 458
Score = 126 bits (317), Expect = 7e-28
Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 10/160 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
++ +D+V+ D++M MDGMQ+ I ++ PG+ V++LTA GS+ AV A +QG F +LTK
Sbjct: 49 QQHIDVVLLDIKMPGMDGMQVLERIHRLHPGVQVVMLTAFGSVGSAVDAMKQGAFDYLTK 108
Query: 181 PVDKDALYQAIDDALEQSAPATDE----------RWREAIVTRSPLMLRLLEQARLVAQS 330
P D D L I AL+ S D + + ++ +SP M R+++ + V S
Sbjct: 109 PADIDELKSVIQMALDYSRLVRDSARTGKGLQGVQEKARVIGQSPAMHRVMDLVQQVGPS 168
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ SVLI G+SGTGKE+ A+A+H A PR+ P ++INC AL
Sbjct: 169 EASVLILGESGTGKELVARALHQAGPRSQGPLVSINCAAL 208
[124][TOP]
>UniRef100_A6TGR1 Response regulator in two-component reguatory system with ZraS,
regulates zraP expression (EBP family) n=2
Tax=Klebsiella pneumoniae RepID=A6TGR1_KLEP7
Length = 443
Score = 126 bits (316), Expect = 9e-28
Identities = 71/153 (46%), Positives = 92/153 (60%), Gaps = 7/153 (4%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DLV+ D+RM EMDG+ EI+ P +PV+I+TA S+ AV A + G +L KP+D
Sbjct: 51 DLVLCDIRMAEMDGIATLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDF 110
Query: 193 DALYQAIDDAL-----EQSAP--ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLIN 351
D L Q + AL +S P ATD RW ++ SP M LL LVA SD +VLI
Sbjct: 111 DTLQQTLVQALAHTRQSESDPSVATDSRW--GMIGDSPAMQALLNDITLVAPSDATVLIY 168
Query: 352 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+SGTGKE+ A+AIH S R KP + +NC AL
Sbjct: 169 GESGTGKELVARAIHACSERRDKPLVTLNCAAL 201
[125][TOP]
>UniRef100_C8R1H2 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Desulfurivibrio alkaliphilus AHT2
RepID=C8R1H2_9DELT
Length = 451
Score = 126 bits (316), Expect = 9e-28
Identities = 72/160 (45%), Positives = 96/160 (60%), Gaps = 10/160 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
++ D + DL++ DG+ L E+ + PG+PVIILTAHGSI AV A +G F++LTK
Sbjct: 45 QQPFDAAVIDLQLVSQDGITLMEELHRDDPGLPVIILTAHGSIESAVDAMARGAFTYLTK 104
Query: 181 PVDKDALYQAIDDALEQSAPATD-ERWREA---------IVTRSPLMLRLLEQARLVAQS 330
P D L I+ ALEQ+ + R RE I+ RS M R+L+Q +A S
Sbjct: 105 PFDSRELILQIERALEQARLNGELHRLRELVEEKRDFGNIIARSEPMRRVLDQVARIADS 164
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
D +V I G SGTGKE+ A+AIH A PR PF+AINC A+
Sbjct: 165 DSTVAIYGASGTGKELIAKAIHLAGPRREAPFLAINCAAI 204
[126][TOP]
>UniRef100_C4X008 DNA-binding response regulator in two-component regulatory system
with ZraS n=1 Tax=Klebsiella pneumoniae NTUH-K2044
RepID=C4X008_KLEPN
Length = 443
Score = 125 bits (315), Expect = 1e-27
Identities = 71/153 (46%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DLV+ D+RM EMDG+ EI+ P +PV+I+TA S+ AV A + G +L KP+D
Sbjct: 51 DLVLCDIRMAEMDGIATLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDF 110
Query: 193 DALYQAIDDAL-----EQSAP--ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLIN 351
D L Q + AL +S P ATD RW ++ SP M LL LVA SD +VLI
Sbjct: 111 DTLQQTLVQALAHTRQSESDPSVATDSRW--GMIGDSPAMQALLNDITLVAPSDATVLIY 168
Query: 352 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+SGTGKE+ A AIH S R KP + +NC AL
Sbjct: 169 GESGTGKELVAHAIHACSERRDKPLVTLNCAAL 201
[127][TOP]
>UniRef100_B5XYD4 Transcriptional regulatory protein ZraR n=1 Tax=Klebsiella
pneumoniae 342 RepID=B5XYD4_KLEP3
Length = 443
Score = 125 bits (314), Expect = 1e-27
Identities = 68/153 (44%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DLV+ D+RM EMDG+ EI+ P +PV+I+TA S+ AV A + G +L KP+D
Sbjct: 51 DLVLCDIRMAEMDGIATLKEIKAYNPAIPVLIMTAFSSVGTAVEAIKSGALDYLVKPLDF 110
Query: 193 DALYQAIDDALEQS-------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLIN 351
D L Q + AL + + ATD RW ++ SP M L+ LVA SD +VLI
Sbjct: 111 DTLQQTLVQALAHTQQSKIDPSVATDSRW--GMIGESPAMQALINNITLVAPSDATVLIC 168
Query: 352 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+SGTGKE+ A+AIH S R KP + +NC AL
Sbjct: 169 GESGTGKELVARAIHACSERREKPLVTLNCAAL 201
[128][TOP]
>UniRef100_B5RMV4 Response regulatory protein n=1 Tax=Borrelia duttonii Ly
RepID=B5RMV4_BORDL
Length = 451
Score = 125 bits (314), Expect = 1e-27
Identities = 68/162 (41%), Positives = 97/162 (59%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
EK+D +ISDLRM ++ G +L ++ P +P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 EKIDAIISDLRMPQISGEELLKIVKDRNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDER-------------WREAIVTRSPLMLRLLEQARLVA 324
VD + L I AL++ T + + E I +S +M ++LE + +A
Sbjct: 104 VDLERLLLIIKRALKKRNDKTQQNVLQKNVIIRKNLSYYEEIFGKSLIMQKILELVKKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S SVLI G+SG GKE+ A AI + S RN KPFI +NC AL
Sbjct: 164 KSKASVLITGESGVGKEVIADAIFDLSNRNDKPFIKVNCAAL 205
[129][TOP]
>UniRef100_C0N423 Nitrogen regulation protein n=1 Tax=Methylophaga thiooxidans DMS010
RepID=C0N423_9GAMM
Length = 468
Score = 125 bits (313), Expect = 2e-27
Identities = 64/151 (42%), Positives = 95/151 (62%), Gaps = 5/151 (3%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D++ISD+RM +DG+QL +EI++ PG+PVII+TA+ + AV+ + G F +L KP D
Sbjct: 54 DVLISDIRMPGIDGLQLLSEIKERYPGLPVIIMTAYSDLDSAVSVYEGGAFEYLPKPFDV 113
Query: 193 DALYQAIDDALEQS-----APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
D + + A+ S PA D IV +P M + +A+S+++VLING+
Sbjct: 114 DEAVELVQRAITHSREQERGPAEDINLGSEIVGEAPAMQEVFRAIGRLARSNITVLINGE 173
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ AQA+H SPR +PFIA+N A+
Sbjct: 174 SGTGKELVAQALHRHSPRRQEPFIALNMAAI 204
[130][TOP]
>UniRef100_Q6AL11 Related to two-component system response regulator (Ntr family) n=1
Tax=Desulfotalea psychrophila RepID=Q6AL11_DESPS
Length = 478
Score = 124 bits (312), Expect = 3e-27
Identities = 68/157 (43%), Positives = 92/157 (58%), Gaps = 10/157 (6%)
Frame = +1
Query: 10 VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD 189
+DLVI+D++MD MDGM L +I+++ P +PV+I+TAH + AV A Q G F +L KP
Sbjct: 63 LDLVITDMQMDGMDGMALLEQIKELNPDLPVLIMTAHAEVEKAVKAMQAGAFGYLAKPFA 122
Query: 190 KDAL----------YQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
D L Y I + E IV +SP M R+ + R VA + S
Sbjct: 123 NDELLVNIYRAARHYSLIRENKRLRHQLQSEDCFSGIVGKSPSMQRVYKLIRKVAPTPAS 182
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI G+SGTGKE+ AQA+H+ SPR + FIA+NC AL
Sbjct: 183 VLITGESGTGKELVAQAVHSTSPRRDEAFIAVNCAAL 219
[131][TOP]
>UniRef100_B2S1A4 Sigma-54-dependent transcriptional activator n=1 Tax=Borrelia
hermsii DAH RepID=B2S1A4_BORHD
Length = 451
Score = 124 bits (312), Expect = 3e-27
Identities = 71/162 (43%), Positives = 94/162 (58%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
EK+D +ISDLRM ++ G +L ++ P +P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 EKIDAIISDLRMPQISGEELLKIVKDKNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDAL-------------EQSAPATDERWREAIVTRSPLMLRLLEQARLVA 324
VD + L I AL E D + E I RS +M + LE + +A
Sbjct: 104 VDLERLLLIIKRALNGKNDRRHENISQENVIIRKDLNYYERIFGRSLIMQKTLELVKKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S SVLI G+SG GKEI A AI + S RN KPFI +NC AL
Sbjct: 164 KSKASVLITGESGVGKEIIADAIFDLSNRNDKPFIKVNCAAL 205
[132][TOP]
>UniRef100_A4VQM0 Two-component response regulator PilR n=1 Tax=Pseudomonas stutzeri
A1501 RepID=A4VQM0_PSEU5
Length = 463
Score = 124 bits (312), Expect = 3e-27
Identities = 61/150 (40%), Positives = 94/150 (62%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE DL ++D+R+ + G++L IQ+ P +PV ++TA+GS+ A+ A + G F FLTK
Sbjct: 64 REHYDLCLTDMRLPDGSGLELVQHIQQQYPQLPVAMITAYGSLDTAIGALKAGAFDFLTK 123
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PVD + L + + AL APA + ++ SP M L +Q +A+S V I+G+S
Sbjct: 124 PVDLNRLRELVSTALRLRAPAAEAPVDSRLLGSSPPMKTLRKQIGKLARSQAPVYISGES 183
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+GKE+ A+ IH PR+ KPF+ +NCGA+
Sbjct: 184 GSGKELVARLIHEQGPRSEKPFVPVNCGAI 213
[133][TOP]
>UniRef100_Q314G6 Two component transcriptional regulator, Fis family n=1
Tax=Desulfovibrio desulfuricans subsp. desulfuricans
str. G20 RepID=Q314G6_DESDG
Length = 488
Score = 124 bits (311), Expect = 3e-27
Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 10/157 (6%)
Frame = +1
Query: 10 VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD 189
V L+++DLRM EM GMQL + +VQPG+ +++LTAHG+I AV A Q G + FLTKP++
Sbjct: 62 VHLMMTDLRMPEMGGMQLLRQALEVQPGLSMVVLTAHGTIETAVEALQSGAYDFLTKPIE 121
Query: 190 KDALYQAIDDALEQSAPATD-ERWREAI---------VTRSPLMLRLLEQARLVAQSDVS 339
D L+ A+ LE+S + R R+ I V M +L VAQSD +
Sbjct: 122 PDQLFSAVAKGLERSRLLEENNRLRQIISAGGEPGELVGEGRAMQQLKRTIAAVAQSDYT 181
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VL+ G+SGTGKE+ A+ +H R +PF+A+NC A+
Sbjct: 182 VLVRGESGTGKELVARLVHRLGNRAGRPFMAVNCPAI 218
[134][TOP]
>UniRef100_A1U261 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Marinobacter aquaeolei VT8
RepID=A1U261_MARAV
Length = 481
Score = 124 bits (310), Expect = 4e-27
Identities = 61/150 (40%), Positives = 95/150 (63%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R VD+V+SD+ M M G +L AE+Q++ PG+P++++TA+G I AV+A Q G +L K
Sbjct: 45 RAPVDMVVSDVNMPGMSGHELLAEVQRLYPGLPMMLITAYGQISHAVSAMQSGAIDYLVK 104
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P + L +A+ + S ++ + V P+ R+ + A VA SD +V+I+G+S
Sbjct: 105 PFEPQVLVEAVSRVVGGSR----QKAGDEPVAEDPVSKRMFQLAAKVAASDSTVMISGES 160
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A+ IH SPR +PF+AINC A+
Sbjct: 161 GTGKEVLARYIHQQSPRADEPFVAINCAAI 190
[135][TOP]
>UniRef100_A8V014 Two component, sigma54 specific, transcriptional regulator, Fis
family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8V014_9AQUI
Length = 453
Score = 124 bits (310), Expect = 4e-27
Identities = 66/154 (42%), Positives = 97/154 (62%), Gaps = 5/154 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
EK+DL I D M ++DG+++ I+ + VI++T GSI DAV A + G + ++TKP
Sbjct: 48 EKIDLAIIDKNMPQLDGIEVLRHIKSHGENIQVIMMTGFGSIEDAVEAMRLGAYHYITKP 107
Query: 184 VDKDALYQAIDDALEQSAPATDE-RWREAI----VTRSPLMLRLLEQARLVAQSDVSVLI 348
++ D L I ALE + R R+AI +T +P+M ++E+AR +A D +VLI
Sbjct: 108 INYDELELVIKQALEHKDLKEENIRLRQAIQEDIITENPIMKSIIEKARKIAPFDTNVLI 167
Query: 349 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+SGTGKE+ A+ IH S R KPFIA+NCGA+
Sbjct: 168 TGESGTGKEVLAKFIHKNSKRADKPFIAVNCGAI 201
[136][TOP]
>UniRef100_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=1 Tax=Gemmata
obscuriglobus UQM 2246 RepID=UPI00016C44AF
Length = 490
Score = 123 bits (309), Expect = 6e-27
Identities = 66/162 (40%), Positives = 96/162 (59%), Gaps = 12/162 (7%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE+ D VI D+R+ +M G+ F I++ P +PVI++TAHGS A+ AT++G F +L K
Sbjct: 43 RERPDAVILDVRLPDMSGLDAFLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLK 102
Query: 181 PVDKDALYQAIDDALE------------QSAPATDERWREAIVTRSPLMLRLLEQARLVA 324
P+D L + + A E + P D E IV + P ML + + +A
Sbjct: 103 PIDLHQLDEVLGRAFEMRLAQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIA 162
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
DV VLI G+SGTGKE+ A+A++ SPR+ KPF+AINC A+
Sbjct: 163 PQDVPVLILGESGTGKELVARALYLHSPRSDKPFVAINCAAI 204
[137][TOP]
>UniRef100_Q1PWN2 Stongly similar to sigma 54 response regulator n=1 Tax=Candidatus
Kuenenia stuttgartiensis RepID=Q1PWN2_9BACT
Length = 466
Score = 123 bits (309), Expect = 6e-27
Identities = 61/156 (39%), Positives = 99/156 (63%), Gaps = 10/156 (6%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DL+I DL+M MDG+++ + ++++ P VI++TA G+I A+ A + G + ++TKP
Sbjct: 53 DLIIVDLKMGIMDGLEVLSNVKEINPSTEVIVMTAFGTINSAIQAIRDGAYDYITKPFHL 112
Query: 193 DALYQAIDDALEQSA---------PATDERWR-EAIVTRSPLMLRLLEQARLVAQSDVSV 342
+ I+ ALE+ T E ++ E I+ SP+M+R+L + S+ +V
Sbjct: 113 PDMLSVIERALEKKRLSEKVNNLQKGTKEHYKFEGIIGNSPVMMRILNILAELTNSESTV 172
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI G+SGTGKE+ A++IHN SPR++KPF+ +NCGAL
Sbjct: 173 LITGESGTGKELVARSIHNNSPRSNKPFVVVNCGAL 208
[138][TOP]
>UniRef100_C8QZI2 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Desulfurivibrio alkaliphilus AHT2
RepID=C8QZI2_9DELT
Length = 448
Score = 123 bits (309), Expect = 6e-27
Identities = 67/159 (42%), Positives = 95/159 (59%), Gaps = 10/159 (6%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E DLVI+D+++ ++DG+ + A I++ P PVI++TA GSI AV A Q+G F+F+TKP
Sbjct: 45 ESFDLVITDVKLGDLDGLTVLAAIKERAPETPVIVITAFGSIDLAVRAMQEGAFTFITKP 104
Query: 184 VDKDALYQAIDDALEQ----------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSD 333
D++ L A ALE +A E + T +P M LLE A A S+
Sbjct: 105 FDRETLRLACRKALEMRNLKLRNRDLAAEVDRLSGAEGMETANPAMAELLEVALRAADSE 164
Query: 334 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLI G+SGTGKE+ A+ +H SPR P +A+NC A+
Sbjct: 165 ASVLITGESGTGKEVLARLLHRHSPRREGPMVAVNCAAI 203
[139][TOP]
>UniRef100_A4XW66 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Pseudomonas mendocina ymp
RepID=A4XW66_PSEMY
Length = 470
Score = 123 bits (308), Expect = 7e-27
Identities = 67/149 (44%), Positives = 93/149 (62%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E LV+SD+ M MDG QL A+I+ P +PV+++TA G++ AV A +QG +L KP
Sbjct: 45 EPFGLVVSDVNMPGMDGHQLLAQIRARYPQLPVLLMTAFGAVERAVDAIRQGAADYLVKP 104
Query: 184 VDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSG 363
+ L + + PA D R+ V P ++LLE A VAQSD +V+I G+SG
Sbjct: 105 FEPRTLLELVARHALGKLPAGD---RDGPVALEPASVQLLELAARVAQSDSTVMITGESG 161
Query: 364 TGKEIFAQAIHNASPRNSKPFIAINCGAL 450
TGKE+ A+ IH SPR+S+PFIAINC A+
Sbjct: 162 TGKEVLARYIHQQSPRSSRPFIAINCAAI 190
[140][TOP]
>UniRef100_A6D7M3 Nitrogen regulation protein n=1 Tax=Vibrio shilonii AK1
RepID=A6D7M3_9VIBR
Length = 467
Score = 123 bits (308), Expect = 7e-27
Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM +DG++L +Q+ P +PVII+TAH + AV A Q+G F +L K
Sbjct: 45 RETPDVLVSDIRMPGIDGIELLNRVQESAPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPK 104
Query: 181 PVDKD----ALYQAIDDALEQSAPATDERWREA----IVTRSPLMLRLLEQARLVAQSDV 336
P D D + +AI +LEQ + + E A I+ +P M + +++S +
Sbjct: 105 PFDIDETLTLVERAITHSLEQKSALSQEEVIAADAPEIIGEAPAMQEVFRAIGRLSRSSI 164
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLING+SGTGKE+ A A+H SPR+SKPFIA+N A+
Sbjct: 165 SVLINGESGTGKELVAHALHRHSPRSSKPFIALNMAAI 202
[141][TOP]
>UniRef100_Q9APD9 Transcriptional regulatory protein zraR n=1 Tax=Klebsiella oxytoca
RepID=ZRAR_KLEOX
Length = 443
Score = 123 bits (308), Expect = 7e-27
Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG++ EI+ P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDIRMAEMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQS----APATDERWRE-AIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + +AL + +P T+ + +V SP M LL LVA SD +V
Sbjct: 106 KPLDFDKLQLTLSEALAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G+SGTGKE+ A+A+H +S R+ +P + +NC AL
Sbjct: 166 LIHGESGTGKELVARALHASSARSRRPLVILNCAAL 201
[142][TOP]
>UniRef100_Q986R6 Two-component C4-dicarboxylate transport system, regulatory protein
n=1 Tax=Mesorhizobium loti RepID=Q986R6_RHILO
Length = 460
Score = 122 bits (306), Expect = 1e-26
Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 10/155 (6%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V++D+RM M+G+QLF I+ + P +PVI++T HG + AVAA + GV+ F+ KP D
Sbjct: 52 VVVTDIRMPGMNGLQLFDRIKAIDPDIPVILVTGHGDVDLAVAALKDGVYDFIPKPYAGD 111
Query: 196 ALYQAIDDALEQSAPATD-ERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVL 345
L +A+ A E+ + R REA ++ +P + RL E R +A DV VL
Sbjct: 112 RLVEALKRASEKRRLVMENRRLREAAALAADGLPLIGEAPAIRRLRETLRQIADMDVDVL 171
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ G++GTGKE+ A +H R+SKPF+A+NCGAL
Sbjct: 172 VEGETGTGKEVVADLLHRWGRRHSKPFVALNCGAL 206
[143][TOP]
>UniRef100_B7LAU9 Fused DNA-binding response regulator in two-component regulatory
system with ZraS: response regulator ; sigma54
interaction protein n=1 Tax=Escherichia coli 55989
RepID=B7LAU9_ECO55
Length = 441
Score = 122 bits (306), Expect = 1e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDTLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[144][TOP]
>UniRef100_A1AIH5 ZraR, fused DNA-binding response regulator in two-component
regulatory system with ZraS: response regulator/sigma54
interaction protein n=3 Tax=Escherichia
RepID=A1AIH5_ECOK1
Length = 441
Score = 122 bits (306), Expect = 1e-26
Identities = 69/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ SI AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKTLNPAIPVLIMTAYSSIETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQSTLEKALAHTHSVDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[145][TOP]
>UniRef100_A5KYT0 Nitrogen regulation protein n=1 Tax=Vibrionales bacterium SWAT-3
RepID=A5KYT0_9GAMM
Length = 467
Score = 122 bits (306), Expect = 1e-26
Identities = 63/158 (39%), Positives = 97/158 (61%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM +DG++L ++ + P +PVII+TAH + AV A Q+G F +L K
Sbjct: 45 RETPDVLVSDIRMPGIDGIELLHQVHQRSPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPK 104
Query: 181 PVDKDALYQAIDDAL--------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDV 336
P D D ++ A+ EQ++ A++E I+ +P M + +++S +
Sbjct: 105 PFDIDETLTLVERAIAHSQEQKREQASEASEETNAPEIIGEAPAMQEVFRAIGRLSRSSI 164
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLING+SGTGKE+ A A+H SPR KPFIA+N A+
Sbjct: 165 SVLINGESGTGKELVAHALHRHSPRAKKPFIALNMAAI 202
[146][TOP]
>UniRef100_A0Z8M8 Two-component response regulator PilR n=1 Tax=marine gamma
proteobacterium HTCC2080 RepID=A0Z8M8_9GAMM
Length = 463
Score = 122 bits (306), Expect = 1e-26
Identities = 59/146 (40%), Positives = 96/146 (65%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DL ++D+++ + +G+ L +Q P +PV ++TAHGS+ A+ A + G F F+TKP+
Sbjct: 49 DLCLTDMKLPDGNGLTLIEHMQNDYPDVPVAMITAHGSVESAIEALKLGAFDFVTKPLAL 108
Query: 193 DALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 372
+ L + + AL+ + PA + +E +V +P M +L +Q R VA+S V I+G+SGTGK
Sbjct: 109 EKLRELVAHALK-TTPANTDVTKETLVGETPAMGKLRDQIRKVARSQAPVHIHGESGTGK 167
Query: 373 EIFAQAIHNASPRNSKPFIAINCGAL 450
E+ A+ IH + PR +PFIA+NCGA+
Sbjct: 168 EVVARLIHQSGPRQDQPFIAVNCGAI 193
[147][TOP]
>UniRef100_B7UPF9 Fused DNA-binding response regulator in two-component regulatory
system with ZraS: response regulator/sigma 54
interaction protein n=1 Tax=Escherichia coli O127:H6
str. E2348/69 RepID=B7UPF9_ECO27
Length = 441
Score = 122 bits (305), Expect = 2e-26
Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + ++V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSVDAETPAVSAS-QFSMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[148][TOP]
>UniRef100_B7NRT7 Fused DNA-binding response regulator in two-component regulatory
system with ZraS: response regulator ; sigma54
interaction protein n=1 Tax=Escherichia coli IAI39
RepID=B7NRT7_ECO7I
Length = 441
Score = 122 bits (305), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[149][TOP]
>UniRef100_A1R0I5 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Borrelia
turicatae 91E135 RepID=A1R0I5_BORT9
Length = 456
Score = 122 bits (305), Expect = 2e-26
Identities = 68/162 (41%), Positives = 94/162 (58%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
EK+D +ISDLRM ++ G +L ++ P +P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 EKIDAIISDLRMPQISGEELLKIVKDKNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDAL-------------EQSAPATDERWREAIVTRSPLMLRLLEQARLVA 324
VD + L I AL + D + E I +S +M + LE + +A
Sbjct: 104 VDLERLLLIIKRALNGKNDKRHENISQDNVIIRKDLNYYERIFGKSLIMQKTLELVKKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S SVLI G+SG GKE+ A AI + S RN KPFI +NC AL
Sbjct: 164 KSKASVLITGESGVGKEVIADAIFDLSNRNDKPFIKVNCAAL 205
[150][TOP]
>UniRef100_Q98AV0 C4-dicarboxylate transport system regulatory protein n=1
Tax=Mesorhizobium loti RepID=Q98AV0_RHILO
Length = 455
Score = 121 bits (304), Expect = 2e-26
Identities = 61/154 (39%), Positives = 91/154 (59%), Gaps = 10/154 (6%)
Frame = +1
Query: 19 VISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDA 198
V+SD+RM ++G+QLF ++ + P +PV+++T H + AVAA Q G + F++KP D
Sbjct: 53 VVSDIRMPGLNGLQLFERVKAIDPEIPVVLITGHADVELAVAAIQDGAYDFISKPYANDR 112
Query: 199 LYQAIDDALEQSAPATDERWREAIVTRS----------PLMLRLLEQARLVAQSDVSVLI 348
L + A E+ + R V RS P M+RL E R +A +DV VL+
Sbjct: 113 LLVTLHRASEKRRLVLENRRLRDAVVRSAGDIPLIGEAPTMIRLRETLRQIADTDVDVLV 172
Query: 349 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G++GTGKE+ A +H S R +KPF+A+NCGAL
Sbjct: 173 EGETGTGKEVVADLLHRWSRRRTKPFVALNCGAL 206
[151][TOP]
>UniRef100_Q3YUY0 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1
Tax=Shigella sonnei Ss046 RepID=Q3YUY0_SHISS
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[152][TOP]
>UniRef100_Q32AH7 Sensor HydH response regulator of hydrogenase 3 activity n=1
Tax=Shigella dysenteriae Sd197 RepID=Q32AH7_SHIDS
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ ++P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALKPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[153][TOP]
>UniRef100_Q1I748 Response regulator FleR n=1 Tax=Pseudomonas entomophila L48
RepID=Q1I748_PSEE4
Length = 456
Score = 121 bits (304), Expect = 2e-26
Identities = 65/150 (43%), Positives = 93/150 (62%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE LV+SD+ M MDG QL A++ + P +PV+++TAH ++ AV A +QG +L K
Sbjct: 44 REPFSLVVSDVNMPGMDGHQLLAQLGRHHPQLPVLLMTAHAAVERAVDAMRQGAVDYLVK 103
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P + AL ++ +A + E V P L+LLE A VA+SD +VLI+G+S
Sbjct: 104 PFEPKALISLVE---RHAAGHLEVGEEEGPVACEPASLQLLELAARVARSDSTVLISGES 160
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A+ IH SPR + PF+AINC A+
Sbjct: 161 GTGKEVLARFIHQQSPRAAAPFVAINCAAI 190
[154][TOP]
>UniRef100_B7NFU5 Fused DNA-binding response regulator in two-component regulatory
system with ZraS: response regulator ; sigma54
interaction protein n=1 Tax=Escherichia coli UMN026
RepID=B7NFU5_ECOLU
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSVDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[155][TOP]
>UniRef100_B7MRC9 Fused DNA-binding response regulator in two-component regulatory
system with ZraS: response regulator ; sigma54
interaction protein n=1 Tax=Escherichia coli ED1a
RepID=B7MRC9_ECO81
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKTLNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSVDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[156][TOP]
>UniRef100_B7LUJ8 Fused DNA-binding response regulator in two-component regulatory
system with ZraS: response regulator ; sigma54
interaction protein n=1 Tax=Escherichia fergusonii ATCC
35469 RepID=B7LUJ8_ESCF3
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSVDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[157][TOP]
>UniRef100_B5RQ99 Response regulatory protein n=1 Tax=Borrelia recurrentis A1
RepID=B5RQ99_BORRA
Length = 451
Score = 121 bits (304), Expect = 2e-26
Identities = 67/162 (41%), Positives = 96/162 (59%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
EK+D +ISDLRM ++ G +L ++ +P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 EKIDAIISDLRMPQISGEELLKIVKDRNLNIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDER-------------WREAIVTRSPLMLRLLEQARLVA 324
VD + L I AL++ T + + E I +S +M ++LE + +A
Sbjct: 104 VDLERLLLIIKRALKKRNDKTQQNVLQKNVIIRKNLSYYEEIFGKSLIMQKILELVKKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S SVLI G+SG GKE+ A AI + S RN KPFI +NC AL
Sbjct: 164 KSKASVLITGESGVGKEVIADAIFDLSNRNDKPFIKVNCAAL 205
[158][TOP]
>UniRef100_B1LNV7 Response regulator ZraR n=1 Tax=Escherichia coli SMS-3-5
RepID=B1LNV7_ECOSM
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[159][TOP]
>UniRef100_Q1N2H1 Two-component response regulator NtrC n=1 Tax=Bermanella marisrubri
RepID=Q1N2H1_9GAMM
Length = 474
Score = 121 bits (304), Expect = 2e-26
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D ++SD+RM MDG++L ++ ++QP +PVII+TAH + AV + QQG F +L K
Sbjct: 43 RETPDAIVSDVRMPGMDGLELLKQVHEIQPDIPVIIMTAHSDLDSAVNSYQQGAFEYLPK 102
Query: 181 PVDKD----ALYQAIDDALEQSA-----PATDERWREAIVTRSPLMLRLLEQARLVAQSD 333
P D D + +AI+ E +A PA + E I+ +P M + ++QS+
Sbjct: 103 PFDVDEAVALIKRAINHRQEHAAVHAQQPAEPYKHTE-IIGEAPAMQEVFRAIGRLSQSN 161
Query: 334 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
++VLING+SGTGKE+ A A+H SPR PF+A+N A+
Sbjct: 162 ITVLINGESGTGKELVAHALHKHSPRREYPFVALNMAAI 200
[160][TOP]
>UniRef100_C9QD15 Nitrogen regulation protein NR(I) n=1 Tax=Vibrio orientalis CIP
102891 RepID=C9QD15_VIBOR
Length = 467
Score = 121 bits (304), Expect = 2e-26
Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM MDG++L ++ P +PVII+TAH + AV A Q+G F +L K
Sbjct: 45 RETPDVLVSDIRMPGMDGLELLKQVNDRSPELPVIIMTAHSDLDAAVNAYQKGAFEYLPK 104
Query: 181 PVDKDALYQAIDDAL--------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDV 336
P D D ++ A+ +Q++ A ++ I+ +P M + +++S +
Sbjct: 105 PFDVDETLTLVERAIAHSQEQKQDQASLAEEDYTPPEIIGEAPAMQEVFRAIGRLSRSSI 164
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLING+SGTGKE+ A A+H SPR SKPFIA+N A+
Sbjct: 165 SVLINGESGTGKELVAHALHRHSPRASKPFIALNMAAI 202
[161][TOP]
>UniRef100_C8SFL3 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Mesorhizobium opportunistum WSM2075
RepID=C8SFL3_9RHIZ
Length = 463
Score = 121 bits (304), Expect = 2e-26
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 10/155 (6%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V+SD+RM M+G+QLF I+ + P +PVI++T HG + AVAA + GV+ F+ KP D
Sbjct: 52 VVVSDIRMPGMNGLQLFDRIKAIDPDIPVILVTGHGDVDLAVAALKDGVYDFIPKPYAGD 111
Query: 196 ALYQAIDDALEQSAPATD-ERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVL 345
L +A+ A E+ + R REA ++ +P + RL E R +A DV VL
Sbjct: 112 RLVEALRRASEKRRLVIENRRLREAAAQAADGLPLIGEAPAISRLRETLRQIADMDVDVL 171
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ G++GTGKE+ A +H R +KPF+A+NCGAL
Sbjct: 172 VEGETGTGKEVVADLLHRWGRRRAKPFVALNCGAL 206
[162][TOP]
>UniRef100_C3SI22 Response regulator HydG n=1 Tax=Escherichia coli RepID=C3SI22_ECOLX
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHIIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[163][TOP]
>UniRef100_C2DPA3 Transcriptional regulatory protein ZraR n=1 Tax=Escherichia coli
83972 RepID=C2DPA3_ECOLX
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKTLNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSVDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[164][TOP]
>UniRef100_C6EE14 Fused DNA-binding response regulator in two-component regulatory
system with ZraS: response regulator/sigma54 interaction
protein n=5 Tax=Escherichia coli RepID=C6EE14_ECOBD
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[165][TOP]
>UniRef100_B3X5W3 Response regulator ZraR n=1 Tax=Shigella dysenteriae 1012
RepID=B3X5W3_SHIDY
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[166][TOP]
>UniRef100_Q0TA61 Transcriptional regulatory protein ZraR n=3 Tax=Escherichia coli
RepID=Q0TA61_ECOL5
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKTLNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSVDAETPAVSAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[167][TOP]
>UniRef100_B2N324 Response regulator ZraR n=1 Tax=Escherichia coli 53638
RepID=B2N324_ECOLX
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[168][TOP]
>UniRef100_A6N7U6 DctD n=1 Tax=Mesorhizobium sp. CJ3 RepID=A6N7U6_9RHIZ
Length = 461
Score = 121 bits (304), Expect = 2e-26
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 10/155 (6%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V+SD+RM M+G+QLF I+ + P +PVI++T HG + AVAA + GV+ F+ KP D
Sbjct: 52 VVVSDIRMPGMNGLQLFDRIKAIDPDIPVILVTGHGDVDLAVAALKDGVYDFIPKPYAGD 111
Query: 196 ALYQAIDDALEQSAPATD-ERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVL 345
L +A+ A E+ + R REA ++ +P + RL E R +A DV VL
Sbjct: 112 RLVEALKRASEKRRLVMENRRLREAAALAADGLPLIGEAPAIHRLRETLRQIADMDVDVL 171
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ G++GTGKE+ A +H R +KPF+A+NCGAL
Sbjct: 172 VEGETGTGKEVVADLLHRWGRRRAKPFVALNCGAL 206
[169][TOP]
>UniRef100_A6N7U3 DctD n=1 Tax=Mesorhizobium sp. CJ1 RepID=A6N7U3_9RHIZ
Length = 461
Score = 121 bits (304), Expect = 2e-26
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 10/155 (6%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V+SD+RM M+G+QLF I+ + P +PVI++T HG + AVAA + GV+ F+ KP D
Sbjct: 52 VVVSDIRMPGMNGLQLFDRIKAIDPDIPVILVTGHGDVDLAVAALKDGVYDFIPKPYAGD 111
Query: 196 ALYQAIDDALEQSAPATD-ERWREA---------IVTRSPLMLRLLEQARLVAQSDVSVL 345
L +A+ A E+ + R REA ++ +P + RL E R +A DV VL
Sbjct: 112 RLVEALKRASEKRRLVMENRRLREAAALAADGLPLIGEAPAIHRLRETLRQIADMDVDVL 171
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ G++GTGKE+ A +H R +KPF+A+NCGAL
Sbjct: 172 VEGETGTGKEVVADLLHRWGRRRAKPFVALNCGAL 206
[170][TOP]
>UniRef100_Q8X613 Transcriptional regulatory protein zraR n=13 Tax=Escherichia coli
RepID=ZRAR_ECO57
Length = 441
Score = 121 bits (304), Expect = 2e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHIIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[171][TOP]
>UniRef100_Q31TZ3 Response regulator of hydrogenase 3 activity n=1 Tax=Shigella
boydii Sb227 RepID=Q31TZ3_SHIBS
Length = 408
Score = 121 bits (303), Expect = 3e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[172][TOP]
>UniRef100_A7ZUM1 Response regulator ZraR n=1 Tax=Escherichia coli E24377A
RepID=A7ZUM1_ECO24
Length = 441
Score = 121 bits (303), Expect = 3e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[173][TOP]
>UniRef100_Q93AB6 HydG n=2 Tax=Yersinia RepID=Q93AB6_YERPE
Length = 463
Score = 121 bits (303), Expect = 3e-26
Identities = 58/153 (37%), Positives = 96/153 (62%), Gaps = 7/153 (4%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DL+++D+RM EMDG++ I+ P +P++I+TA+ ++ AV A + G + +LTKP+D
Sbjct: 60 DLILTDVRMSEMDGIEALKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPLDF 119
Query: 193 DALYQAIDDALEQSAPATDERW-------REAIVTRSPLMLRLLEQARLVAQSDVSVLIN 351
D L ++ ALE + + + + I+ RSP M L++ ++A S+ +VLI
Sbjct: 120 DMLQLTLERALEHTHLKNENKTLKQQLISNQNIIGRSPQMRYLMDMVGMIAPSEATVLIC 179
Query: 352 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+SGTGKEI A+++H SPR +P + +NC AL
Sbjct: 180 GESGTGKEIIARSVHANSPRKDQPLVIVNCAAL 212
[174][TOP]
>UniRef100_Q2BHX7 Two-component response regulator NtrC n=1 Tax=Neptuniibacter
caesariensis RepID=Q2BHX7_9GAMM
Length = 477
Score = 121 bits (303), Expect = 3e-26
Identities = 62/152 (40%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D +ISD+RM DG+++ IQ+ PG+P+II+TAH + AVA+ Q G F +L KP D
Sbjct: 50 DAIISDIRMPGTDGLEMLESIQESHPGLPIIIMTAHSDLDSAVASYQGGAFEYLPKPFDV 109
Query: 193 DALY----QAIDDALEQSAPATDERWREA--IVTRSPLMLRLLEQARLVAQSDVSVLING 354
D +A+ A+EQ ++ E+ I+ +P M + ++QS+++VLING
Sbjct: 110 DEAVALAKRALAHAIEQREQVAEQVMEESTEIIGEAPAMQEVFRAIGRLSQSNITVLING 169
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+SGTGKE+ A A+H SPR KPFI +N A+
Sbjct: 170 ESGTGKELVAHALHKHSPRREKPFIPLNMAAI 201
[175][TOP]
>UniRef100_C8UKQ6 Fused DNA-binding response regulator ZraR in two-component
regulatory system with ZraS: response regulator/sigma 54
interaction protein n=1 Tax=Escherichia coli O111:H-
str. 11128 RepID=C8UKQ6_ECO11
Length = 441
Score = 121 bits (303), Expect = 3e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDTLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCVAL 201
[176][TOP]
>UniRef100_C8TMP4 Fused DNA-binding response regulator ZraR in two-component
regulatory system with ZraS: response regulator/sigma 54
interaction protein n=1 Tax=Escherichia coli O26:H11
str. 11368 RepID=C8TMP4_ECOLX
Length = 441
Score = 121 bits (303), Expect = 3e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDTLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCVAL 201
[177][TOP]
>UniRef100_C2B8S5 Putative uncharacterized protein n=1 Tax=Citrobacter youngae ATCC
29220 RepID=C2B8S5_9ENTR
Length = 441
Score = 121 bits (303), Expect = 3e-26
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 5/151 (3%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DLV+ D+RM EMDG+ EI+ + P +PV+I+TA S+ AV A + G +L KP+D
Sbjct: 51 DLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDF 110
Query: 193 DALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQ 357
D L + ++ AL + E + ++ RSP M +LL + +VA SD +VLI+G
Sbjct: 111 DRLQETLEKALAHTRDTGAELPSASAAQFGMIGRSPAMQQLLNEIAMVAPSDATVLIHGD 170
Query: 358 SGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SGTGKE+ A+A+H +S R+ KP + +NC AL
Sbjct: 171 SGTGKELVARALHASSARSDKPLVTLNCAAL 201
[178][TOP]
>UniRef100_C0AUG2 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198
RepID=C0AUG2_9ENTR
Length = 474
Score = 121 bits (303), Expect = 3e-26
Identities = 66/153 (43%), Positives = 95/153 (62%), Gaps = 7/153 (4%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D+++SD+RM ++DG+ L I++ P +PVII+TAH + AV A QQG F +L KP D
Sbjct: 49 DVLLSDIRMPDIDGLSLLKIIKENYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDI 108
Query: 193 DALYQAIDDAL----EQSAPATDERWREAI---VTRSPLMLRLLEQARLVAQSDVSVLIN 351
D ID A+ EQ P TDE +++ + +P M + +++S +SVLIN
Sbjct: 109 DETLALIDRAITHYREQKQPNTDETSLQSVTDMIGEAPAMQEVYRIIGRLSRSSISVLIN 168
Query: 352 GQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G+SGTGKE+ A A+H SPR S PFIA+N A+
Sbjct: 169 GESGTGKELVAHALHRHSPRASSPFIALNMAAI 201
[179][TOP]
>UniRef100_C0AMN7 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Borrelia
sp. SV1 RepID=C0AMN7_9SPIO
Length = 452
Score = 121 bits (303), Expect = 3e-26
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E +D++ISDLRM ++ G +L +++ G+P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 ENLDVIISDLRMPQISGEKLLKIVKEKNLGIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDE-------------RWREAIVTRSPLMLRLLEQARLVA 324
+D + L I +L + DE ++ E I+ +S LM ++ E +A
Sbjct: 104 LDLERLLLIIKRSLNKKENNDDENANLENILIRKDLKYYEKIMGKSLLMQKIFELVIKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S+ SVLI G+SG GKEI A AI + S RN KPFI +NC AL
Sbjct: 164 KSNASVLITGESGVGKEIIADAIFDLSNRNDKPFIKVNCAAL 205
[180][TOP]
>UniRef100_B7J0K9 Acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) n=4
Tax=Borrelia burgdorferi RepID=B7J0K9_BORBZ
Length = 451
Score = 121 bits (303), Expect = 3e-26
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E +D++ISDLRM ++ G +L +++ G+P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 ENLDVIISDLRMPQISGEKLLKIVKEKNLGIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDE-------------RWREAIVTRSPLMLRLLEQARLVA 324
+D + L I +L + DE ++ E I+ +S LM ++ E +A
Sbjct: 104 LDLERLLLIIKRSLNKKENNDDENPNLENILIRKDLKYYEKIMGKSLLMQKIFELVIKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S+ SVLI G+SG GKEI A AI + S RN KPFI +NC AL
Sbjct: 164 KSNASVLITGESGVGKEIIADAIFDLSNRNDKPFIKVNCAAL 205
[181][TOP]
>UniRef100_B9ABS0 Acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) n=3
Tax=Borrelia burgdorferi RepID=B9ABS0_BORBU
Length = 452
Score = 121 bits (303), Expect = 3e-26
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E +D++ISDLRM ++ G +L +++ G+P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 ENLDVIISDLRMPQISGEKLLKIVKEKNLGIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDE-------------RWREAIVTRSPLMLRLLEQARLVA 324
+D + L I +L + DE ++ E I+ +S LM ++ E +A
Sbjct: 104 LDLERLLLIIKRSLNKKENNDDENPNLENILIRKDLKYYEKIMGKSLLMQKIFELVIKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S+ SVLI G+SG GKEI A AI + S RN KPFI +NC AL
Sbjct: 164 KSNASVLITGESGVGKEIIADAIFDLSNRNDKPFIKVNCAAL 205
[182][TOP]
>UniRef100_B3IGJ7 Response regulator ZraR n=1 Tax=Escherichia coli E110019
RepID=B3IGJ7_ECOLX
Length = 441
Score = 121 bits (303), Expect = 3e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[183][TOP]
>UniRef100_B2TWJ1 Response regulator ZraR n=2 Tax=Enterobacteriaceae
RepID=B2TWJ1_SHIB3
Length = 441
Score = 121 bits (303), Expect = 3e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[184][TOP]
>UniRef100_P14375 Transcriptional regulatory protein zraR n=5 Tax=Escherichia
RepID=ZRAR_ECOLI
Length = 441
Score = 121 bits (303), Expect = 3e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[185][TOP]
>UniRef100_Q0SXZ6 Transcriptional Regulatory protein n=1 Tax=Shigella flexneri 5 str.
8401 RepID=Q0SXZ6_SHIF8
Length = 441
Score = 120 bits (302), Expect = 4e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSVRSEKPLVTLNCAAL 201
[186][TOP]
>UniRef100_B3PE06 PilR n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PE06_CELJU
Length = 467
Score = 120 bits (302), Expect = 4e-26
Identities = 58/147 (39%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
DL ++D+R+ + G++L IQ+ PG+PV ++TAHGSI A+ + + G F F++KPVD
Sbjct: 49 DLCLTDMRLPDGSGLELVEYIQQQHPGLPVAVITAHGSIDTAIESMKAGAFDFISKPVDL 108
Query: 193 DALYQAIDDALEQS-APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 369
L + ++ A+E + P + I+ S + L+ + +A+S V I+G+SG+G
Sbjct: 109 ATLRRLVNTAIESAQLPPQEPPQTTPIIGHSKAIQDLIRSIQKLARSQAPVYISGESGSG 168
Query: 370 KEIFAQAIHNASPRNSKPFIAINCGAL 450
KE+ A++IH+ PR+SKPFIA+NCGA+
Sbjct: 169 KELVARSIHDLGPRSSKPFIAVNCGAI 195
[187][TOP]
>UniRef100_A8IDY6 Two component response regulator n=1 Tax=Azorhizobium caulinodans
ORS 571 RepID=A8IDY6_AZOC5
Length = 446
Score = 120 bits (302), Expect = 4e-26
Identities = 63/157 (40%), Positives = 97/157 (61%), Gaps = 12/157 (7%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V+SD+RM +DG++LF ++KV P +PVI++T HG I AV A ++G + FL KP D
Sbjct: 47 VVVSDVRMPRIDGLELFRRLRKVDPELPVILITGHGDIAMAVEAMREGAYDFLAKPYAGD 106
Query: 196 ALYQAIDDALE------------QSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
L +I ALE ++A A E + ++ P M RL + R +A +DV
Sbjct: 107 RLLGSIRHALEKRRLVLENRELKRAAEAAGEEF--PLLGADPAMERLRQTLRQLADADVD 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VL+ G++G+GKE+ A +H S R+++PF+A+NCGAL
Sbjct: 165 VLVEGETGSGKEVVANLLHRLSHRSTRPFVAVNCGAL 201
[188][TOP]
>UniRef100_B7VHD9 Nitrogen regulation protein NR(I) n=2 Tax=Vibrio RepID=B7VHD9_VIBSL
Length = 467
Score = 120 bits (302), Expect = 4e-26
Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM +DG++L ++ + P +PVII+TAH + AV A Q+G F +L K
Sbjct: 45 RETPDVLVSDIRMPGIDGIELLHQVHQRSPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPK 104
Query: 181 PVDKDALYQAIDDAL--------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDV 336
P D D ++ A+ EQ++ A ++ I+ +P M + +++S +
Sbjct: 105 PFDIDETLTLVERAIAHSQEQKREQASEAVEDTNAPEIIGEAPAMQEVFRAIGRLSRSSI 164
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLING+SGTGKE+ A A+H SPR KPFIA+N A+
Sbjct: 165 SVLINGESGTGKELVAHALHRHSPRAKKPFIALNMAAI 202
[189][TOP]
>UniRef100_UPI0001AF61C5 transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191
RepID=UPI0001AF61C5
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[190][TOP]
>UniRef100_UPI00019143C1 transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139
RepID=UPI00019143C1
Length = 437
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[191][TOP]
>UniRef100_Q57H51 Response regulator in two-component reguatory system with HydH,
regulates hydrogenase 3 activity (EBP family) n=1
Tax=Salmonella enterica RepID=Q57H51_SALCH
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[192][TOP]
>UniRef100_C0Q2T6 Transcriptional regulatory protein n=1 Tax=Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594
RepID=C0Q2T6_SALPC
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[193][TOP]
>UniRef100_B5F1I7 Transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Agona str. SL483
RepID=B5F1I7_SALA4
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[194][TOP]
>UniRef100_B4T106 Transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Newport str. SL254
RepID=B4T106_SALNS
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[195][TOP]
>UniRef100_A8ZXY3 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Desulfococcus oleovorans Hxd3
RepID=A8ZXY3_DESOH
Length = 466
Score = 120 bits (301), Expect = 5e-26
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 10/156 (6%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D+V+ DL+M M GM+ +I+ PG+PVII+TA S+ AV A ++G + +LTKP+D
Sbjct: 58 DIVLMDLKMVHMSGMEALEQIRSFNPGVPVIIMTAFSSVDTAVEALKKGAYDYLTKPLDF 117
Query: 193 DALYQAIDDALEQSAPATDERW----------REAIVTRSPLMLRLLEQARLVAQSDVSV 342
+ L ++ LE + + R R+ I+ SP M RLLE A SD S+
Sbjct: 118 EKLRLTLERILEAARLRKENRHLKERLGSRFSRDQIIGNSPAMTRLLETVEQAAPSDASI 177
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI G+SGTGKE+ A A+H S R PF+ INC A+
Sbjct: 178 LITGESGTGKELIAGALHFNSARREGPFVKINCAAI 213
[196][TOP]
>UniRef100_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Syntrophobacter fumaroxidans MPOB
RepID=A0LLZ0_SYNFM
Length = 466
Score = 120 bits (301), Expect = 5e-26
Identities = 63/160 (39%), Positives = 103/160 (64%), Gaps = 10/160 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE VDL++ D++M EM+G++L +++ P + V+++TAHG I AV A + G + F+TK
Sbjct: 46 REPVDLLLVDMKMPEMNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITK 105
Query: 181 PVDKDALYQAIDDALEQSAPATDE-------RWREA---IVTRSPLMLRLLEQARLVAQS 330
P D + L +++ ALE+S + + EA +V +S M R+ E ++VA++
Sbjct: 106 PFDHETLVLSLNKALERSRLLRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKT 165
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
D++VLI G+SGTGK++ +AIH S R S PF+A+NC A+
Sbjct: 166 DLTVLITGESGTGKDLACRAIHALSQRRSNPFVAVNCPAI 205
[197][TOP]
>UniRef100_Q1VAS1 Nitrogen regulation protein n=1 Tax=Vibrio alginolyticus 12G01
RepID=Q1VAS1_VIBAL
Length = 467
Score = 120 bits (301), Expect = 5e-26
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM +DG++L ++Q+ P +PVII+TAH + AV A Q+G F +L K
Sbjct: 45 REVPDVLVSDIRMPGIDGLELLKQVQRDYPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPK 104
Query: 181 PVDKDALYQAIDDAL--------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDV 336
P D D ++ A+ EQ +P I+ +P M + +++S +
Sbjct: 105 PFDIDETLTLVERAIAHSHENKREQLSPEDIPAETPEIIGEAPAMQEVFRAIGRLSRSSI 164
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLING+SGTGKE+ A A+H SPR +KPFIA+N A+
Sbjct: 165 SVLINGESGTGKELVAHALHRHSPRANKPFIALNMAAI 202
[198][TOP]
>UniRef100_C8QZZ9 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Desulfurivibrio alkaliphilus AHT2
RepID=C8QZZ9_9DELT
Length = 461
Score = 120 bits (301), Expect = 5e-26
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 10/157 (6%)
Frame = +1
Query: 10 VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD 189
+DL+I+D+RM MDG++L I+ + P +PVI++TA G + AVAA + G F++LTKP D
Sbjct: 46 LDLIITDMRMPGMDGLELLKTIKGINPSLPVIMITAFGEVDKAVAAMRAGAFNYLTKPFD 105
Query: 190 KDALYQAIDDALEQ----------SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
D L +I ALE A ++ ++V +S M + VA + S
Sbjct: 106 NDELLVSIRKALEHYEVVRENTRLRAEISERTSYASMVGKSHRMREIYGLIEKVAPTPTS 165
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI G+SGTGKE+ A+A+H+ SPR+ PFI+INC L
Sbjct: 166 VLITGESGTGKELVARAVHSNSPRSQAPFISINCAGL 202
[199][TOP]
>UniRef100_C8PS46 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Treponema
vincentii ATCC 35580 RepID=C8PS46_9SPIO
Length = 456
Score = 120 bits (301), Expect = 5e-26
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 10/159 (6%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E VDLVI+DLRM + G ++ + PG+PVI+LT HG++ AV A + G + FLTKP
Sbjct: 45 EVVDLVITDLRMPGVGGQEILRRVTSETPGVPVIVLTGHGTVEAAVEAMRMGAYDFLTKP 104
Query: 184 VDKDALYQAIDDAL----------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSD 333
+D D L + AL E ++ E I+ +S M + E R VA S
Sbjct: 105 LDLDRLSLLVKRALQNRELVLQHRELVEQMQSDKTFEHIIGKSAAMEHVFEMIRKVAPSR 164
Query: 334 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLI G+SG GKE+ A AIHN SPR +K ++ ++C AL
Sbjct: 165 ASVLITGESGVGKELIASAIHNLSPRKNKSYVKVHCAAL 203
[200][TOP]
>UniRef100_C5S7Z4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=1
Tax=Allochromatium vinosum DSM 180 RepID=C5S7Z4_CHRVI
Length = 475
Score = 120 bits (301), Expect = 5e-26
Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE+ D++++D+RM +DG++L ++ PG+PVII+TAH + AV+A Q G F +L K
Sbjct: 46 REQPDVILTDIRMPGIDGLELLRQVTSRYPGLPVIIMTAHSDLDSAVSAFQDGAFEYLPK 105
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTR-------SPLMLRLLEQARLVAQSDVS 339
P D D +A+ +ER E V R +P M + +A+S+++
Sbjct: 106 PFDLD---EAVSQVSRACRRGREERAEEVSVARGPDIIGEAPAMQDVFRAIGRLARSNIT 162
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLING+SGTGKE+ A A+H SPR+ +PFIA+N A+
Sbjct: 163 VLINGESGTGKELVAHALHRHSPRSERPFIALNMAAI 199
[201][TOP]
>UniRef100_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus
DSM 12809 RepID=C1SKR5_9BACT
Length = 442
Score = 120 bits (301), Expect = 5e-26
Identities = 63/158 (39%), Positives = 100/158 (63%), Gaps = 9/158 (5%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
++ D++I+D+RM M G ++ + K+ P MPVII+TAHG+IPDAVAA ++G + +LTKP
Sbjct: 43 KEYDVLITDIRMPGMSGNEVMEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKP 102
Query: 184 VDKDALYQAIDDALEQSAPATDE-RWRE--------AIVTRSPLMLRLLEQARLVAQSDV 336
+ + L +I A+E S + R ++ +V +S +++L A VA +D
Sbjct: 103 FENEELLNSIKKAVEISRMRRENTRMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDA 162
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VL+ G+SGTGKE+ A+ +H+ S R KPFI +NC A+
Sbjct: 163 PVLVLGESGTGKELIARQVHSKSNRADKPFITVNCAAV 200
[202][TOP]
>UniRef100_C1MGA0 Transcriptional regulatory protein ZraR n=1 Tax=Citrobacter sp.
30_2 RepID=C1MGA0_9ENTR
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 96/156 (61%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA S+ AV A + G +L
Sbjct: 46 RERVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAFSSVETAVGALKTGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M +LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQQLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H +S R KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHASSARRDKPLVTLNCAAL 201
[203][TOP]
>UniRef100_B4TDF1 Transcriptional regulatory protein ZraR n=2 Tax=Salmonella enterica
subsp. enterica serovar Heidelberg RepID=B4TDF1_SALHS
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[204][TOP]
>UniRef100_B5FQL9 Transcriptional regulatory protein ZraR n=3 Tax=Salmonella enterica
subsp. enterica RepID=B5FQL9_SALDC
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[205][TOP]
>UniRef100_B4AC33 Transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Newport str. SL317
RepID=B4AC33_SALNE
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[206][TOP]
>UniRef100_B5QYF9 Transcriptional regulatory protein n=4 Tax=Salmonella enterica
subsp. enterica RepID=B5QYF9_SALEP
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[207][TOP]
>UniRef100_A7K0W0 Nitrogen regulation protein NR(I) n=2 Tax=Vibrio sp. Ex25
RepID=A7K0W0_9VIBR
Length = 483
Score = 120 bits (301), Expect = 5e-26
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM +DG++L ++Q+ P +PVII+TAH + AV A Q+G F +L K
Sbjct: 61 REVPDVLVSDIRMPGIDGLELLKQVQRDYPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPK 120
Query: 181 PVDKDALYQAIDDAL--------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDV 336
P D D ++ A+ EQ +P I+ +P M + +++S +
Sbjct: 121 PFDIDETLTLVERAIAHSHENKREQLSPEDIPAETPEIIGEAPAMQEVFRAIGRLSRSSI 180
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLING+SGTGKE+ A A+H SPR +KPFIA+N A+
Sbjct: 181 SVLINGESGTGKELVAHALHRHSPRANKPFIALNMAAI 218
[208][TOP]
>UniRef100_Q8Z333 Transcriptional regulatory protein zraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Typhi RepID=ZRAR_SALTI
Length = 441
Score = 120 bits (301), Expect = 5e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[209][TOP]
>UniRef100_Q83MI9 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1
Tax=Shigella flexneri RepID=Q83MI9_SHIFL
Length = 441
Score = 120 bits (300), Expect = 6e-26
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 7/157 (4%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
RE+V DLV+ D+RM EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L
Sbjct: 46 REQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGAQDYLI 105
Query: 178 KPVDKDALYQAIDDAL------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVS 339
KP+D D L ++ AL + PA + +V +SP M LL + LVA S+ +
Sbjct: 106 KPLDFDNLQATLEKALAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEAT 164
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLI+G SGTGKE+ A+AIH +S R+ KP + +NC AL
Sbjct: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAAL 201
[210][TOP]
>UniRef100_C3K589 Putative sigma-54 interactive two-component system, response
regulator n=1 Tax=Pseudomonas fluorescens SBW25
RepID=C3K589_PSEFS
Length = 458
Score = 120 bits (300), Expect = 6e-26
Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 11/161 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R+ +V+SD+RM MDG++L AE+ P +PV+++T HG +P AV A + G + FL K
Sbjct: 48 RDWPGVVVSDIRMPGMDGLELLAELHGQDPDLPVLLITGHGDVPLAVQAMRAGAYDFLEK 107
Query: 181 PVDKDALYQAIDDALEQSAPATDERW-------REAIVTR----SPLMLRLLEQARLVAQ 327
P DAL ++ AL D R R+ + TR SP MLRL EQ +A
Sbjct: 108 PFASDALLDSVRRALALRRLVLDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAA 167
Query: 328 SDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ VLI G++G GKE+ A+A+H+ S R S PF+AIN GAL
Sbjct: 168 TKADVLILGETGAGKEVVARALHDLSSRRSGPFVAINAGAL 208
[211][TOP]
>UniRef100_B3E7W3 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Geobacter lovleyi SZ RepID=B3E7W3_GEOLS
Length = 447
Score = 120 bits (300), Expect = 6e-26
Identities = 62/160 (38%), Positives = 98/160 (61%), Gaps = 10/160 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R ++V++DL+M M G +L ++ K+ P + V ++T H S+ AVAA +QG + F+ K
Sbjct: 42 RHGAEIVLTDLKMPRMGGQELLEQLIKLDPQVIVFVITGHSSLESAVAAVKQGAYDFIAK 101
Query: 181 PVDKDALYQAIDDALEQSAPATD----------ERWREAIVTRSPLMLRLLEQARLVAQS 330
P D D + I+ AL++ + +R R +T +P M +LL+ AR A++
Sbjct: 102 PFDPDDVLLRINRALKERRLEDEVALYRSEQERQRSRHIPLTSNPQMQQLLDLARRAART 161
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
D +VLI G++G GKE+ A+AIH SPR +PF+A+NCGAL
Sbjct: 162 DSTVLIQGETGVGKELVARAIHFWSPRREQPFVAVNCGAL 201
[212][TOP]
>UniRef100_B1JC96 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Pseudomonas putida W619
RepID=B1JC96_PSEPW
Length = 458
Score = 120 bits (300), Expect = 6e-26
Identities = 63/150 (42%), Positives = 93/150 (62%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R+ LVISD+ M MDG QL A +++ P +PV+++TAH ++ AV A +QG +L K
Sbjct: 44 RDAYSLVISDVNMPGMDGHQLLAHLRRQHPQLPVLLMTAHAAVERAVEAMRQGAVDYLVK 103
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P + AL ++ A ++ + V P +LLE A VA+SD +VLI+G+S
Sbjct: 104 PFEPKALLSLVERHAAGRLSAAED---DGPVACEPASRQLLELAARVARSDSTVLISGES 160
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A+ IH SPR ++PF+AINC A+
Sbjct: 161 GTGKEVLARYIHQQSPRAAQPFVAINCAAI 190
[213][TOP]
>UniRef100_A9MHC5 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- RepID=A9MHC5_SALAR
Length = 441
Score = 120 bits (300), Expect = 6e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKLLNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDHLQETLEKALAHTRETGAELPSASATQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[214][TOP]
>UniRef100_A7HHY4 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Anaeromyxobacter sp. Fw109-5
RepID=A7HHY4_ANADF
Length = 480
Score = 120 bits (300), Expect = 6e-26
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 10/160 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+E D+V++DLRM +DGM++ Q++ P VI++TA+G+I AV A +QG + FL K
Sbjct: 67 QETFDVVLTDLRMPSVDGMEVLRAAQRLAPETQVIVMTAYGTIESAVDAIRQGAYDFLAK 126
Query: 181 PVDKDALYQAIDDALEQ-------SAPATDERWR---EAIVTRSPLMLRLLEQARLVAQS 330
P +D L + ALE+ S A + R R E IV RS M +L++ +A +
Sbjct: 127 PFKEDELLLRVSKALEKRRLLGEVSLLAGEFRKRYGLEHIVGRSSAMRDVLDRVVRIAPT 186
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
D +VL++G+SGTGKE+ A+AIH AS R KPF+ +NC A+
Sbjct: 187 DATVLVSGESGTGKELVARAIHVASRRGDKPFVPVNCAAI 226
[215][TOP]
>UniRef100_Q8KJ50 PROBABLE C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY
PROTEIN DCTD n=1 Tax=Mesorhizobium loti
RepID=Q8KJ50_RHILO
Length = 455
Score = 120 bits (300), Expect = 6e-26
Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 10/154 (6%)
Frame = +1
Query: 19 VISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDA 198
V+SD+RM ++G+QLF ++ + P +PV+++T H + AVAA + G + F++KP D
Sbjct: 53 VVSDIRMPGLNGLQLFERVKAIDPEIPVVLITGHADVELAVAAIKDGAYDFISKPYANDR 112
Query: 199 LYQAIDDALEQSAPATDERWREAIVTRS----------PLMLRLLEQARLVAQSDVSVLI 348
L + A E+ + R V RS P M+RL E R +A +DV VL+
Sbjct: 113 LLVTLHRASEKRRLVLENRRLRDAVVRSAGDIPLIGEAPTMIRLRETLRQIADTDVDVLV 172
Query: 349 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G++GTGKE+ A +H S R +KPF+A+NCGAL
Sbjct: 173 EGETGTGKEVVADLLHRWSRRRTKPFVALNCGAL 206
[216][TOP]
>UniRef100_Q51454 Transcriptional activator n=1 Tax=Pseudomonas aeruginosa
RepID=Q51454_PSEAE
Length = 473
Score = 120 bits (300), Expect = 6e-26
Identities = 68/150 (45%), Positives = 90/150 (60%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE LVISD+ M MDG QL I+ P +PV+++TA+G++ AV A +QG +L K
Sbjct: 44 REAFSLVISDVNMPGMDGHQLLGLIRTRYPHLPVLLMTAYGAVDRAVEAMRQGAADYLVK 103
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P + AL + PA +E + V P +LLE A VA+SD +VLI+G+S
Sbjct: 104 PFEARALLDLVARHALGQLPACEE---DGPVALEPASRQLLELAARVARSDSTVLISGES 160
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A IH SPR KPFIAINC A+
Sbjct: 161 GTGKEVLANYIHQQSPRAGKPFIAINCAAI 190
[217][TOP]
>UniRef100_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus
Kuenenia stuttgartiensis RepID=Q1Q500_9BACT
Length = 457
Score = 120 bits (300), Expect = 6e-26
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 10/160 (6%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+ K++LV+ DLR+ E +G++L +I K P +P+II+TAHGSI AV A ++G +S++ K
Sbjct: 45 QNKINLVLVDLRLSEENGIELMRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAK 104
Query: 181 PVDKDALYQAIDDALEQS---------APATDERWR-EAIVTRSPLMLRLLEQARLVAQS 330
P D L I +ALE+ DER I+ ++ ML +LE V+++
Sbjct: 105 PFRNDDLAMQIKNALEKQRLTQEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKT 164
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
D +V+I G+SGTGKE+ A+AIH S R + PFIA NCGA+
Sbjct: 165 DCNVIIYGESGTGKELIARAIHQNSNRANGPFIATNCGAI 204
[218][TOP]
>UniRef100_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and
DNA-binding domains n=1 Tax=Planctomyces limnophilus DSM
3776 RepID=C1ZI03_PLALI
Length = 473
Score = 120 bits (300), Expect = 6e-26
Identities = 66/159 (41%), Positives = 95/159 (59%), Gaps = 10/159 (6%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E D++I++L MDE+DG+++ + P VI+LT H SI A+ A Q G ++LTKP
Sbjct: 61 ENFDVIITELMMDEVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKP 120
Query: 184 VDKDALYQAIDDA----------LEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSD 333
+D L QA+D A E S ++ E ++ SP M RL+E+ R VA +D
Sbjct: 121 LDISELRQAVDRASSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTD 180
Query: 334 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+VLI G+SGTGKE+ A+AIH S R +KPF+ +N AL
Sbjct: 181 STVLIQGESGTGKELVARAIHQNSERKNKPFVPLNISAL 219
[219][TOP]
>UniRef100_B9X839 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Borrelia
spielmanii A14S RepID=B9X839_9SPIO
Length = 452
Score = 120 bits (300), Expect = 6e-26
Identities = 67/162 (41%), Positives = 97/162 (59%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E +D++ISDLRM ++ G +L +++ +P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 ENIDVIISDLRMPQISGEKLLKIVKEKNLKIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDE-------------RWREAIVTRSPLMLRLLEQARLVA 324
+D + L I +L + DE ++ E IV +S LM ++ E +A
Sbjct: 104 LDLERLLLIIKRSLNKKENNDDENANLENILIRKDLKYYEKIVGKSLLMQKIFELVIKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S+ SVLI G+SG GKEI A AI + S RN KPFI +NC AL
Sbjct: 164 KSNASVLITGESGVGKEIIADAIFDLSNRNDKPFIKVNCAAL 205
[220][TOP]
>UniRef100_B7AIC9 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM
20697 RepID=B7AIC9_9BACE
Length = 438
Score = 120 bits (300), Expect = 6e-26
Identities = 64/150 (42%), Positives = 93/150 (62%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R + DL++SD+R+ E DG+ L ++K + +P II T + S+PD V + G +L K
Sbjct: 44 RMQFDLILSDVRLPEGDGISLLEWLRKEKKDIPFIITTEYVSVPDVVRTIKLGARDYLPK 103
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
PV +D L + +D A + R+ SP++L++ + ARLVA SD+SV+I G +
Sbjct: 104 PVHRDHLLELAEDVFHPVATVRKQE-RQLFHRTSPMLLKVEKFARLVAPSDMSVMILGAN 162
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE AQ IHN S R KPF+A+NCGAL
Sbjct: 163 GTGKESVAQTIHNNSERYGKPFVAVNCGAL 192
[221][TOP]
>UniRef100_B5Q0V8 Transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066
RepID=B5Q0V8_SALHA
Length = 441
Score = 120 bits (300), Expect = 6e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHVCSARSDKPLVTLNCAAL 201
[222][TOP]
>UniRef100_B5NJK6 Transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433
RepID=B5NJK6_SALET
Length = 441
Score = 120 bits (300), Expect = 6e-26
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVKLNCAAL 201
[223][TOP]
>UniRef100_A3JEL9 Nitrogen regulation protein NR(I) n=1 Tax=Marinobacter sp. ELB17
RepID=A3JEL9_9ALTE
Length = 474
Score = 120 bits (300), Expect = 6e-26
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 8/157 (5%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+ D++ISD+RM +DG+ L A I + PG+PVII+TAH + AV++ Q G F +L KP
Sbjct: 47 EQPDVIISDIRMPGIDGLSLLARIAESHPGLPVIIMTAHSDLESAVSSYQTGAFDYLPKP 106
Query: 184 VDKD---ALYQAIDDALEQSAPATDERWREA-----IVTRSPLMLRLLEQARLVAQSDVS 339
D D AL + + TD +A I+ +P M + ++ S+++
Sbjct: 107 FDLDDAVALVRRAAGHSRERRAKTDSVHDKAAGGAEIIGEAPAMQEVFRAIGRLSHSNIT 166
Query: 340 VLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
VLING+SGTGKE+ AQA+HN SPR +PFIA+N A+
Sbjct: 167 VLINGESGTGKELVAQALHNHSPRTGQPFIALNMAAI 203
[224][TOP]
>UniRef100_UPI0001AEBA93 two-component system, response regulator n=1 Tax=Alteromonas
macleodii ATCC 27126 RepID=UPI0001AEBA93
Length = 469
Score = 119 bits (299), Expect = 8e-26
Identities = 68/152 (44%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
+++ISD+RM +MDGM L E+ P +PVII+TAH + AV A Q+G F +L KP D
Sbjct: 50 EVIISDIRMPQMDGMTLLNEVHASHPLLPVIIMTAHSDLDSAVNAYQKGAFEYLPKPFDI 109
Query: 193 DALY----QAIDDALEQS--APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLING 354
D +A+ A EQS + A E I+ +P M + +++S +SVLING
Sbjct: 110 DEAVTLTQRALAHAREQSTVSKAQVEDVVTEIIGEAPAMQEVFRAIGRLSRSSISVLING 169
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
QSGTGKE+ A A+H SPR SKPFIA+N A+
Sbjct: 170 QSGTGKELVAHALHRHSPRASKPFIALNMAAI 201
[225][TOP]
>UniRef100_Q21NG6 Nitrogen regulation protein NR(I) n=1 Tax=Saccharophagus degradans
2-40 RepID=Q21NG6_SACD2
Length = 473
Score = 119 bits (299), Expect = 8e-26
Identities = 67/156 (42%), Positives = 92/156 (58%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
+EK D+VISD+RM M+G+ L + K P +PVII+TAH + AVAA Q G F +L K
Sbjct: 46 QEKPDVVISDVRMPGMNGLTLLTHLHKEIPNLPVIIMTAHSDLDSAVAAYQGGAFEYLPK 105
Query: 181 PVDKD----ALYQAIDDALEQ--SAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
P D D +A+ A EQ APA I+ +P M + ++QS+++V
Sbjct: 106 PFDVDEAVAVTQRALSHAQEQRVEAPAAQPAVDTEIIGEAPAMQEVFRAIGRLSQSNITV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LING+SGTGKE+ A A+H SPR FIA+N A+
Sbjct: 166 LINGESGTGKELVAHALHKHSPRREGQFIALNMAAI 201
[226][TOP]
>UniRef100_B9JNH6 Two-component response regulator protein regulating
C4-dicarboxylate transport system n=1 Tax=Agrobacterium
radiobacter K84 RepID=B9JNH6_AGRRK
Length = 450
Score = 119 bits (299), Expect = 8e-26
Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
+ +D+VISD+RM + G++L A I+K P +PVIIL+ HG +P AVAA Q G F+FLTKP
Sbjct: 48 DTIDVVISDVRMPGISGLELLAVIRKTWPELPVIILSGHGDVPMAVAAIQAGAFNFLTKP 107
Query: 184 VDKDALYQAIDDALEQS-----------APATDERWREAIVTRSPLMLRLLEQARLVAQS 330
+ L + +ALEQ+ + A R ++ RL +A
Sbjct: 108 YVPEQLIGTLQNALEQTRLRRRVVSLEQSNAIQARLERQLLGADQATTRLKSTIEQLAPY 167
Query: 331 DVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
V VLI G++G+GKE+ A+ +H SPR + PF+AINC AL
Sbjct: 168 HVDVLIKGETGSGKEVVARLLHECSPRQAGPFVAINCAAL 207
[227][TOP]
>UniRef100_B2ICF2 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Beijerinckia indica subsp. indica ATCC
9039 RepID=B2ICF2_BEII9
Length = 446
Score = 119 bits (299), Expect = 8e-26
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 10/159 (6%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E +V+SD+RM +DG+Q F ++K+ P +PVI++T HG I AV A + GV+ F++KP
Sbjct: 43 EFTGVVVSDIRMPGIDGLQFFKYLKKIDPDLPVILITGHGDISMAVDALRDGVYDFISKP 102
Query: 184 VDKDALYQAIDDALEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSD 333
D L +I ALE + R + ++ SP M RL + +A +D
Sbjct: 103 YTFDRLLGSIRHALESRRLVLENRRLKRQIEASAINLPLLGSSPAMERLRQTLHQLADAD 162
Query: 334 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
V VLI G++GTGKE+ A +H S R+++PF+A+NCGAL
Sbjct: 163 VDVLIEGETGTGKEVVANTLHQWSHRSNRPFVALNCGAL 201
[228][TOP]
>UniRef100_A8H9K3 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=1
Tax=Shewanella pealeana ATCC 700345 RepID=A8H9K3_SHEPA
Length = 469
Score = 119 bits (299), Expect = 8e-26
Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+++SD+RM DG+ L +Q P +PVII+TAH + AV+A Q G F +L KP D D
Sbjct: 49 VIVSDIRMPGTDGLTLLERLQNHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDID 108
Query: 196 ALYQAIDDAL----EQSAPATDERWREA---IVTRSPLMLRLLEQARLVAQSDVSVLING 354
+D AL EQS+ T E A I+ +P M + +++S +SVLING
Sbjct: 109 EAISLVDRALTHAKEQSSTITTEEPIVATPEIIGEAPAMQEVFRAIGRLSRSSISVLING 168
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
QSGTGKE+ A A+H SPR KPFIAIN A+
Sbjct: 169 QSGTGKELVASALHKHSPRKGKPFIAINMAAI 200
[229][TOP]
>UniRef100_A7IG78 Two component, sigma54 specific, transcriptional regulator, Fis
family n=1 Tax=Xanthobacter autotrophicus Py2
RepID=A7IG78_XANP2
Length = 455
Score = 119 bits (299), Expect = 8e-26
Identities = 57/155 (36%), Positives = 97/155 (62%), Gaps = 10/155 (6%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+V+SD+RM +DG++LF ++++ P +PVI++T HG I AV A ++G + FL KP D
Sbjct: 48 VVVSDVRMPGIDGLELFRRLRRIDPDLPVILITGHGDIAMAVDAMREGAYDFLAKPYAND 107
Query: 196 ALYQAIDDALEQSAPATDERWRE----------AIVTRSPLMLRLLEQARLVAQSDVSVL 345
L ++ AL++ + R + ++ +P+M R+ + R +A +DV VL
Sbjct: 108 RLLTSVRHALDRRRLVLENRDLKRSVEAASEDMPLLGTTPVMARMRQMLRQIADADVDVL 167
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ G++G+GKE+ A A+H S R ++PF+A+NCGAL
Sbjct: 168 VEGETGSGKEVVANALHRWSRRAARPFVAVNCGAL 202
[230][TOP]
>UniRef100_B8K8U9 Nitrogen regulation protein NR (I) n=1 Tax=Vibrio parahaemolyticus
16 RepID=B8K8U9_VIBPA
Length = 467
Score = 119 bits (299), Expect = 8e-26
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM +DG++L ++ + P +PVII+TAH + AV A Q+G F +L K
Sbjct: 45 RESPDVLVSDIRMPGIDGIELLRQVHERSPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPK 104
Query: 181 PVDKDALYQAIDDAL--------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDV 336
P D D ++ A+ EQ+ T + I+ +P M + +++S +
Sbjct: 105 PFDVDETLTLVERAITHSHEQRREQANADTGDYSAPEIIGEAPAMQEVFRAIGRLSRSSI 164
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLING+SGTGKE+ A A+H SPR +KPFIA+N A+
Sbjct: 165 SVLINGESGTGKELVAHALHRHSPRAAKPFIALNMAAI 202
[231][TOP]
>UniRef100_UPI00017F2A19 response regulatory protein (rrp-2) n=1 Tax=Borrelia burgdorferi
80a RepID=UPI00017F2A19
Length = 452
Score = 119 bits (298), Expect = 1e-25
Identities = 66/162 (40%), Positives = 98/162 (60%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E +D++ISDLRM ++ G +L +++ G+P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 ENLDVIISDLRMPQISGEKLLKIVKEKNLGIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDE-------------RWREAIVTRSPLMLRLLEQARLVA 324
+D + L I +L + +E ++ E I+ +S LM ++ E +A
Sbjct: 104 LDLERLLLIIKRSLNKKENNDNENANLENILIRKDLKYYEKIMGKSLLMQKIFELVIKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S+ SVLI G+SG GKEI A AI + S RN KPFI +NC AL
Sbjct: 164 KSNASVLITGESGVGKEIIADAIFDLSNRNDKPFIKVNCAAL 205
[232][TOP]
>UniRef100_Q7MQ14 Nitrogen regulation protein n=2 Tax=Vibrio vulnificus
RepID=Q7MQ14_VIBVY
Length = 469
Score = 119 bits (298), Expect = 1e-25
Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 9/159 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM +DG++L ++ + P +PVII+TAH + AV A Q+G F +L K
Sbjct: 45 REVPDVLVSDIRMPGIDGIELLRQVHEKCPNLPVIIMTAHSDLDAAVNAYQKGAFEYLPK 104
Query: 181 PVDKDALYQAIDDAL--------EQSAPA-TDERWREAIVTRSPLMLRLLEQARLVAQSD 333
P D D ++ A+ EQ A A T I+ +P M + +++S
Sbjct: 105 PFDIDETLTLVERAIAHGQEQKREQMASAQTHTAHTPEIIGEAPAMQEVFRAIGRLSRSS 164
Query: 334 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+SVLING+SGTGKE+ A A+H SPR+SKPFIA+N A+
Sbjct: 165 ISVLINGESGTGKELVAHALHRHSPRSSKPFIALNMAAI 203
[233][TOP]
>UniRef100_Q67MM1 Sigma-54-dependent transcriptional regulator n=1
Tax=Symbiobacterium thermophilum RepID=Q67MM1_SYMTH
Length = 464
Score = 119 bits (298), Expect = 1e-25
Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 10/159 (6%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+ D I D++M +DG+ +++QP +PV+ILT HGSI AV A + G + +LTKP
Sbjct: 46 EEFDAAIFDMKMPGLDGIATLRRAREIQPSLPVLILTGHGSIETAVEAIRAGAYDYLTKP 105
Query: 184 VDKDALYQAIDDALEQSAPATDERW-REA---------IVTRSPLMLRLLEQARLVAQSD 333
+ L ++ ALE+ + + REA IV RS + RLLE R VAQ
Sbjct: 106 CNLAELEAVLEKALERRVLEVENQGLREALRRLGDEVEIVGRSEPIRRLLELTRRVAQGS 165
Query: 334 VSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+ VLI G+SGTGKE+ A+A+H SPR S PFI +N GAL
Sbjct: 166 MPVLIEGESGTGKELIARAVHLWSPRASGPFIPVNAGAL 204
[234][TOP]
>UniRef100_Q2K5Z6 Two-component response regulator protein regulating
C4-dicarboxylate transport system n=1 Tax=Rhizobium etli
CFN 42 RepID=Q2K5Z6_RHIEC
Length = 448
Score = 119 bits (298), Expect = 1e-25
Identities = 62/154 (40%), Positives = 97/154 (62%), Gaps = 10/154 (6%)
Frame = +1
Query: 19 VISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDA 198
V++D+RM E+DG+QLFA ++ + P +PVI++T HG IP AV A Q G + F+ KP D
Sbjct: 52 VVTDIRMPEIDGLQLFATLKGMDPDLPVILMTGHGDIPMAVQAIQDGAYDFIAKPFPADR 111
Query: 199 LYQAIDDALEQSAPATDERW-REA---------IVTRSPLMLRLLEQARLVAQSDVSVLI 348
L Q++ A E+ + R R+A ++ ++P+M L + R +A +DV VL+
Sbjct: 112 LVQSVRRASEKRRLVLENRMLRKAADDAQESLPLIGQTPVMDNLRKILRHIADTDVDVLV 171
Query: 349 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
G++G+GKE+ AQ +H S R + F+A+NCGAL
Sbjct: 172 AGETGSGKEVVAQILHQWSHRRNGNFVALNCGAL 205
[235][TOP]
>UniRef100_Q0SM93 Response regulatory protein n=1 Tax=Borrelia afzelii PKo
RepID=Q0SM93_BORAP
Length = 452
Score = 119 bits (298), Expect = 1e-25
Identities = 66/162 (40%), Positives = 97/162 (59%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E +D++ISDLRM ++ G +L +++ +P IILTAHG++ AV A ++G + FLTKP
Sbjct: 44 ENIDVIISDLRMPQISGEKLLKIVKEKNLEIPFIILTAHGTVDSAVDAMREGAYDFLTKP 103
Query: 184 VDKDALYQAIDDALEQSAPATDE-------------RWREAIVTRSPLMLRLLEQARLVA 324
+D + L I +L + DE ++ E I+ +S LM ++ E +A
Sbjct: 104 LDLERLLLIIKRSLNKKESNDDENANLENILIRKDLKYYEKIMGKSLLMQKIFELVIKIA 163
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S+ SVLI G+SG GKEI A AI + S RN KPFI +NC AL
Sbjct: 164 KSNASVLITGESGVGKEIIADAIFDLSNRNDKPFIKVNCAAL 205
[236][TOP]
>UniRef100_B3PG83 Nitrogen regulation protein NR(I) n=1 Tax=Cellvibrio japonicus
Ueda107 RepID=B3PG83_CELJU
Length = 478
Score = 119 bits (298), Expect = 1e-25
Identities = 66/158 (41%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
R+ D +ISD+RM DG+ L + + P +P+II+TAH + AVAA Q G F +L K
Sbjct: 46 RDIPDAIISDIRMPGTDGLTLLSNLHNTHPHIPIIIMTAHSDLDSAVAAYQGGAFEYLPK 105
Query: 181 PVDKD--------ALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDV 336
P D D AL A + EQ+ +T E E I+ +P M + ++QS++
Sbjct: 106 PFDVDDAVAVTQRALAHAQEQKSEQAPESTPETNTE-IIGEAPAMQEVFRAIGRLSQSNI 164
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+VLINGQSGTGKE+ A+A+H SPR + PFIA+N A+
Sbjct: 165 TVLINGQSGTGKELVARALHRHSPRRNGPFIALNMAAI 202
[237][TOP]
>UniRef100_B0TPP6 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=1
Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TPP6_SHEHH
Length = 469
Score = 119 bits (298), Expect = 1e-25
Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
+++SD+RM DG+ L +Q P +PVII+TAH + AV+A Q G F +L KP D D
Sbjct: 49 VIVSDIRMPGTDGLTLLERLQNHYPHIPVIIMTAHSDLDSAVSAYQAGAFEYLPKPFDID 108
Query: 196 ALYQAIDDAL----EQSAPATDERWREA---IVTRSPLMLRLLEQARLVAQSDVSVLING 354
+D AL EQS+ T E A I+ +P M + +++S +SVLING
Sbjct: 109 EAISLVDRALTHAKEQSSSITVEEPLVATPEIIGEAPAMQEVFRAIGRLSRSSISVLING 168
Query: 355 QSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
QSGTGKE+ A A+H SPR KPFIAIN A+
Sbjct: 169 QSGTGKELVASALHKHSPRKGKPFIAINMAAI 200
[238][TOP]
>UniRef100_Q2BI29 Two-component response regulator n=1 Tax=Neptuniibacter
caesariensis RepID=Q2BI29_9GAMM
Length = 454
Score = 119 bits (298), Expect = 1e-25
Identities = 65/148 (43%), Positives = 95/148 (64%)
Frame = +1
Query: 7 KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV 186
+VD+V++D+ M MDG +L ++I++ PG+PV+++TA G + AV A + G +L KP
Sbjct: 46 QVDMVVTDVNMPGMDGHELLSQIRQSYPGLPVMLITAFGQVSKAVEAIKAGAVDYLMKPF 105
Query: 187 DKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGT 366
D DAL ++ A T+E+ E + +LL+ AR VA SD +VLI+G+SGT
Sbjct: 106 DSDALISSVRRFAVGQA-VTEEQ--EQPIAEEGSSKQLLQLARRVAASDSTVLISGESGT 162
Query: 367 GKEIFAQAIHNASPRNSKPFIAINCGAL 450
GKE+ AQ IH SPR +PFIAINC A+
Sbjct: 163 GKEVLAQYIHCNSPRAKEPFIAINCAAI 190
[239][TOP]
>UniRef100_C6NTB3 Two-component response regulator PilR n=1 Tax=Acidithiobacillus
caldus ATCC 51756 RepID=C6NTB3_9GAMM
Length = 455
Score = 119 bits (298), Expect = 1e-25
Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Frame = +1
Query: 16 LVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKD 195
L ++DLR+ + GMQL +++++ P +PV ++TA+ S AV A + G F F+TKP++
Sbjct: 55 LCLTDLRLGDGSGMQLLHKVRELYPQVPVAVITAYASAEGAVEAMRAGAFDFMTKPIELA 114
Query: 196 ALYQAIDDALEQSA-PATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGK 372
L + + +A+ P E +V SP M+ L E+ RL+ +S+ V I G+SGTGK
Sbjct: 115 RLRRLVSEAIALGELPRESVDLSERLVGESPGMVALRERVRLLGRSNAPVHIRGESGTGK 174
Query: 373 EIFAQAIHNASPRNSKPFIAINCGAL 450
E+ A+AIH+ASPR K FIA+NCGA+
Sbjct: 175 ELVARAIHDASPRREKAFIAVNCGAI 200
[240][TOP]
>UniRef100_B5Q4T1 Transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Virchow str. SL491
RepID=B5Q4T1_SALVI
Length = 441
Score = 119 bits (298), Expect = 1e-25
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPVIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ KP + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDKPLVTLNCAAL 201
[241][TOP]
>UniRef100_B4TQL4 Transcriptional regulatory protein ZraR n=2 Tax=Salmonella enterica
subsp. enterica serovar Schwarzengrund
RepID=B4TQL4_SALSV
Length = 441
Score = 119 bits (298), Expect = 1e-25
Identities = 64/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ +P + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 201
[242][TOP]
>UniRef100_B5BVQ0 Transcriptional regulatory protein ZraR n=1 Tax=Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23
RepID=B5BVQ0_SALET
Length = 441
Score = 119 bits (298), Expect = 1e-25
Identities = 64/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ +P + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 201
[243][TOP]
>UniRef100_A3YAQ9 Two-component response regulator NtrC n=1 Tax=Marinomonas sp.
MED121 RepID=A3YAQ9_9GAMM
Length = 475
Score = 119 bits (298), Expect = 1e-25
Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 9/158 (5%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
EK ++ISD+RM MDG+ L +IQ+ P +PVII+TAH + AVA+ Q G F +L KP
Sbjct: 47 EKPSVIISDIRMPGMDGLTLLTKIQEENPYLPVIIMTAHSDLDSAVASYQGGAFEYLPKP 106
Query: 184 VDKDALYQAIDDAL---EQSAPATDERWRE------AIVTRSPLMLRLLEQARLVAQSDV 336
D + + A+ +S P+ +E E I+ +P M + +A S++
Sbjct: 107 FDVEEAVSLVKRAILHHHKSMPSIEEEVPELDVVEKEIIGEAPAMQEVFRAIGRLANSNI 166
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+VLING+SGTGKE+ A A+H SPR++ PFIA+N A+
Sbjct: 167 TVLINGESGTGKELVAHALHKHSPRSASPFIALNMAAI 204
[244][TOP]
>UniRef100_A3UP73 Response regulator for NtrB n=1 Tax=Vibrio splendidus 12B01
RepID=A3UP73_VIBSP
Length = 467
Score = 119 bits (298), Expect = 1e-25
Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 8/158 (5%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE D+++SD+RM +DG++L ++ + P +PVII+TAH + AV A Q+G F +L K
Sbjct: 45 RETPDVLVSDIRMPGIDGIELLHQVHQRSPDLPVIIMTAHSDLDAAVNAYQKGAFEYLPK 104
Query: 181 PVDKDALYQAIDDAL--------EQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDV 336
P D D ++ A+ EQ++ ++ I+ +P M + +++S +
Sbjct: 105 PFDIDETLTLVERAIAHSQEQKREQASEVAEDTNAPEIIGEAPAMQEVFRAIGRLSRSSI 164
Query: 337 SVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
SVLING+SGTGKE+ A A+H SPR KPFIA+N A+
Sbjct: 165 SVLINGESGTGKELVAHALHRHSPRAKKPFIALNMAAI 202
[245][TOP]
>UniRef100_B7UX90 Two-component response regulator n=5 Tax=Pseudomonas aeruginosa
RepID=B7UX90_PSEA8
Length = 473
Score = 119 bits (298), Expect = 1e-25
Identities = 67/150 (44%), Positives = 90/150 (60%)
Frame = +1
Query: 1 REKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTK 180
RE LVISD+ M MDG QL I+ P +PV+++TA+G++ AV A +QG +L K
Sbjct: 44 REAFSLVISDVNMPGMDGHQLLGLIRTRYPHLPVLLMTAYGAVDRAVEAMRQGAADYLVK 103
Query: 181 PVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQS 360
P + AL + P ++E + V P +LLE A VA+SD +VLI+G+S
Sbjct: 104 PFEARALLDLVARHALGQLPGSEE---DGPVALEPASRQLLELAARVARSDSTVLISGES 160
Query: 361 GTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
GTGKE+ A IH SPR KPFIAINC A+
Sbjct: 161 GTGKEVLANYIHQQSPRAGKPFIAINCAAI 190
[246][TOP]
>UniRef100_A3J9B7 Sigma 54-dependent transcriptional activator containing CheY-like
receiver domain n=1 Tax=Marinobacter sp. ELB17
RepID=A3J9B7_9ALTE
Length = 496
Score = 119 bits (298), Expect = 1e-25
Identities = 60/147 (40%), Positives = 91/147 (61%)
Frame = +1
Query: 10 VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVD 189
VD+V+SD+ M + G +L E+Q++ PG+P++++TA+G I AV+A Q G +L KP +
Sbjct: 48 VDMVVSDVNMPGLSGHELLVEVQRLYPGLPMMLMTAYGQISHAVSAMQAGAIDYLVKPFE 107
Query: 190 KDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTG 369
L A+ A ++ V P+ R+ + A VA SD +V+I+G+SGTG
Sbjct: 108 GHTLVDAVSKITGGKRQADSDQ----PVAEDPVSKRMFQLAIKVANSDSTVMISGESGTG 163
Query: 370 KEIFAQAIHNASPRNSKPFIAINCGAL 450
KE+ A+ IH SPR +KPFIAINC A+
Sbjct: 164 KEVLARYIHQHSPRATKPFIAINCAAI 190
[247][TOP]
>UniRef100_P25852 Transcriptional regulatory protein zraR n=4 Tax=Salmonella enterica
subsp. enterica RepID=ZRAR_SALTY
Length = 441
Score = 119 bits (298), Expect = 1e-25
Identities = 64/156 (41%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Frame = +1
Query: 1 REKV-DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLT 177
REKV DLV+ D+RM EMDG+ EI+ + P +P++I+TA S+ AV A + G +L
Sbjct: 46 REKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLI 105
Query: 178 KPVDKDALYQAIDDALEQSAPATDE-----RWREAIVTRSPLMLRLLEQARLVAQSDVSV 342
KP+D D L + ++ AL + E + ++ SP M LL + +VA SD +V
Sbjct: 106 KPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATV 165
Query: 343 LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
LI+G SGTGKE+ A+A+H S R+ +P + +NC AL
Sbjct: 166 LIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 201
[248][TOP]
>UniRef100_Q3SKC8 Two Component Transcriptional Regulator, Fis family n=1
Tax=Thiobacillus denitrificans ATCC 25259
RepID=Q3SKC8_THIDA
Length = 454
Score = 119 bits (297), Expect = 1e-25
Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 6/155 (3%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E+ DLVI+DLRM+ M G+ L EI+++ P +PVI++TA+GSI AV A + G F +LTKP
Sbjct: 43 ERFDLVITDLRMEGMSGVDLLREIKRLNPLLPVILITAYGSIDSAVDAMRLGAFDYLTKP 102
Query: 184 VDKDALYQAIDDALEQSAP------ATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVL 345
+ + + I QSAP A R E IV +P M L +A +A++D+SVL
Sbjct: 103 FREQDILEKI--RASQSAPPGFALAAEASRDAEDIVADTPQMRATLIKAERIARTDISVL 160
Query: 346 INGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
I G++GTGK A+ IH S R PF++INC +L
Sbjct: 161 ITGETGTGKTRVARFIHENSARREAPFVSINCASL 195
[249][TOP]
>UniRef100_O51704 Response regulatory protein (Rrp-2) n=1 Tax=Borrelia burgdorferi
RepID=O51704_BORBU
Length = 453
Score = 119 bits (297), Expect = 1e-25
Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 13/162 (8%)
Frame = +1
Query: 4 EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKP 183
E +D++ISDLRM ++ G +L +++ G+P IILTAHG++ AV A ++G + FLTKP
Sbjct: 46 ENLDVIISDLRMPQISGEKLLKIVKEKNLGIPFIILTAHGTVDSAVDAMREGAYDFLTKP 105
Query: 184 VDKDALYQAIDDALEQSAPATDE-------------RWREAIVTRSPLMLRLLEQARLVA 324
+D + L I +L + +E ++ E I+ +S LM ++ E +A
Sbjct: 106 LDLERLLLIIKRSLNKKENNDNENANLENILIRKDLKYYEKIMGKSLLMQKIFELVIKIA 165
Query: 325 QSDVSVLINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
+S+ S+LI G+SG GKEI A AI + S RN KPFI +NC AL
Sbjct: 166 KSNASILITGESGVGKEIIADAIFDLSNRNDKPFIKVNCAAL 207
[250][TOP]
>UniRef100_C4L9V6 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=1
Tax=Tolumonas auensis DSM 9187 RepID=C4L9V6_TOLAT
Length = 474
Score = 119 bits (297), Expect = 1e-25
Identities = 67/154 (43%), Positives = 91/154 (59%), Gaps = 8/154 (5%)
Frame = +1
Query: 13 DLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDK 192
D+++SD+RM +DG+ L IQ QP +PVII+TAH + AV A Q G F +L KP D
Sbjct: 50 DVIVSDIRMPGIDGLSLLQLIQDKQPDIPVIIMTAHSDLDSAVNAYQSGAFEYLPKPFDI 109
Query: 193 D---ALYQAIDDALEQSAPATDERWREA-----IVTRSPLMLRLLEQARLVAQSDVSVLI 348
D AL Q + L + R + A I+ +P M + +A+S +SVLI
Sbjct: 110 DEAVALVQRAESHLHEQRNKRRARQQVATTAPEIIGEAPAMQEVFRAIGRLARSSISVLI 169
Query: 349 NGQSGTGKEIFAQAIHNASPRNSKPFIAINCGAL 450
NGQSGTGKE+ A A+H SPR +KPFIA+N A+
Sbjct: 170 NGQSGTGKELVAHALHRHSPRAAKPFIALNMAAI 203