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[1][TOP] >UniRef100_Q9ZNX9 AT5G24120 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZNX9_ARATH Length = 517 Score = 213 bits (541), Expect = 1e-53 Identities = 102/136 (75%), Positives = 123/136 (90%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 RPPTE+E++ER+ I+PERYR+V +A++P+LSL+S+H T+EEFING+ D G+ +N RQ Sbjct: 382 RPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQ 441 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 PALLRLALDDVLDSLKPKE+LVIRQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKALM Sbjct: 442 PALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALM 501 Query: 214 KLKLSARLDYLRRYVV 167 KLK AR+DYLR+Y+V Sbjct: 502 KLKHQARVDYLRQYIV 517 [2][TOP] >UniRef100_B9RIL8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9RIL8_RICCO Length = 501 Score = 212 bits (540), Expect = 1e-53 Identities = 110/137 (80%), Positives = 121/137 (88%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 QR PTEEEIIERV IS ERY +V +A++P LSLH+RH T+EEFING+ D G GDNRR Sbjct: 367 QRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQEEFINGITDIDG--GDNRR 424 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 QPALLRLALDDVLDSLKPKE+LVIRQR+GLDGKGDRTLGEIA NLNISREMVRK+EVKAL Sbjct: 425 QPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKAL 484 Query: 217 MKLKLSARLDYLRRYVV 167 MKLK AR+DYLRRYVV Sbjct: 485 MKLKHPARVDYLRRYVV 501 [3][TOP] >UniRef100_B9ND00 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9ND00_POPTR Length = 512 Score = 211 bits (536), Expect = 4e-53 Identities = 107/137 (78%), Positives = 121/137 (88%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R P E+EIIE+V ISPERY +VT+AS+P+LSLHSRH TT+EEFI G+ D G GD+RR Sbjct: 378 KRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEEFIGGIADVDG--GDDRR 435 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 Q ALLRLALDDVLDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKAL Sbjct: 436 QSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKAL 495 Query: 217 MKLKLSARLDYLRRYVV 167 MKLK R+DYLRRYVV Sbjct: 496 MKLKHPTRVDYLRRYVV 512 [4][TOP] >UniRef100_A7QTV0 Chromosome undetermined scaffold_171, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7QTV0_VITVI Length = 518 Score = 206 bits (523), Expect = 1e-51 Identities = 103/136 (75%), Positives = 120/136 (88%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 QR PTEEEIIE+V ISPERY +V +AS+ +LSLH+RH TT+EE+ING+ D G+ GD R Sbjct: 382 QRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRGR 441 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 Q ALLRLALDDVLDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NL+ISREMVRKHEVKAL Sbjct: 442 QLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKAL 501 Query: 217 MKLKLSARLDYLRRYV 170 MKLK AR+DYLR+Y+ Sbjct: 502 MKLKHPARVDYLRQYI 517 [5][TOP] >UniRef100_B9N985 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N985_POPTR Length = 512 Score = 199 bits (507), Expect = 1e-49 Identities = 105/136 (77%), Positives = 116/136 (85%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEIIE+V IS ERY +V +AS+P+LSLHSRH TT+EE I+GV D G GD+RRQ Sbjct: 379 RKPTGEEIIEKVGISIERYHEVMRASKPVLSLHSRHKTTQEELISGVADVNG--GDDRRQ 436 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 ALLRLALDDVLDSLKPKE+LV+RQRFGLDGKGDRTLGEIA NLNISREMVRKHE KALM Sbjct: 437 SALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEAKALM 496 Query: 214 KLKLSARLDYLRRYVV 167 KLK R+DYL RYVV Sbjct: 497 KLKHPTRVDYLCRYVV 512 [6][TOP] >UniRef100_Q84JN3 Os05g0586600 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q84JN3_ORYSJ Length = 500 Score = 172 bits (436), Expect = 2e-41 Identities = 85/135 (62%), Positives = 107/135 (79%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEE++++V +SP RYRDV + ++P SLH+R+ T+EE IN V DD + D Sbjct: 366 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 425 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM Sbjct: 426 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 485 Query: 214 KLKLSARLDYLRRYV 170 KLK R++YLRRY+ Sbjct: 486 KLKHPTRVEYLRRYM 500 [7][TOP] >UniRef100_B9FIR8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FIR8_ORYSJ Length = 457 Score = 172 bits (436), Expect = 2e-41 Identities = 85/135 (62%), Positives = 107/135 (79%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEE++++V +SP RYRDV + ++P SLH+R+ T+EE IN V DD + D Sbjct: 323 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 382 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM Sbjct: 383 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 442 Query: 214 KLKLSARLDYLRRYV 170 KLK R++YLRRY+ Sbjct: 443 KLKHPTRVEYLRRYM 457 [8][TOP] >UniRef100_A2Y810 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=A2Y810_ORYSI Length = 500 Score = 172 bits (436), Expect = 2e-41 Identities = 85/135 (62%), Positives = 107/135 (79%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEE++++V +SP RYRDV + ++P SLH+R+ T+EE IN V DD + D Sbjct: 366 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 425 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM Sbjct: 426 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 485 Query: 214 KLKLSARLDYLRRYV 170 KLK R++YLRRY+ Sbjct: 486 KLKHPTRVEYLRRYM 500 [9][TOP] >UniRef100_C5YWL3 Putative uncharacterized protein Sb09g030110 n=1 Tax=Sorghum bicolor RepID=C5YWL3_SORBI Length = 501 Score = 167 bits (423), Expect = 5e-40 Identities = 86/136 (63%), Positives = 107/136 (78%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 RP T+EE+ +V ISP+RYRDV + ++P SLH+R+ T+EE IN V DD + D R Sbjct: 366 RPATDEEVRRKVGISPQRYRDVLRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDAGGR 425 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLRLA+DD+LDSLKPKE+LVIRQRFGLDG+G RTL EIA NL+ISREMVRK+E+KAL Sbjct: 426 HNTLLRLAIDDLLDSLKPKESLVIRQRFGLDGRGKRTLSEIAGNLSISREMVRKYELKAL 485 Query: 217 MKLKLSARLDYLRRYV 170 MKLK R++YLRRY+ Sbjct: 486 MKLKHPTRVEYLRRYM 501 [10][TOP] >UniRef100_A9SLV0 Plastid sigma factor SIG5 n=2 Tax=Physcomitrella patens RepID=A9SLV0_PHYPA Length = 632 Score = 118 bits (295), Expect = 4e-25 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSR-HITTEEEFINGVVDDGGLDGDNRR 398 R PT +EI + + I+ +R+RD+ + + SLH IT E+ N V ++ LD Sbjct: 497 RQPTNDEIRKHLGITADRFRDILRTNMRTSSLHEHDRITGREKVENLVSEEDALD-TLAG 555 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++++ LDDVLDSL+PKENLV+RQRFGLDGKG R+L E+ LN+SREMVR++E++ + Sbjct: 556 GTSMVQYGLDDVLDSLRPKENLVLRQRFGLDGKGQRSLSEVGLILNLSREMVRRYELRGI 615 Query: 217 MKLKLSARLDYLRRYV 170 +KL+ R++YLR Y+ Sbjct: 616 LKLQHPTRVEYLRNYL 631 [11][TOP] >UniRef100_B9I544 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I544_POPTR Length = 97 Score = 115 bits (288), Expect = 2e-24 Identities = 57/65 (87%), Positives = 61/65 (93%) Frame = -2 Query: 361 LDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSARLDYL 182 LDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKALMKLK R+DYL Sbjct: 33 LDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYL 92 Query: 181 RRYVV 167 RRYVV Sbjct: 93 RRYVV 97 [12][TOP] >UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex degensii KC4 RepID=C9R939_9THEO Length = 369 Score = 86.7 bits (213), Expect = 1e-15 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI E++ ISPE+ R++ K +Q +SL + E+ + ++D Sbjct: 233 REPTPEEIAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEA 292 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ALLR L++VL SL P+E V+R RFGLD RTL E+ ++RE +R+ E K L Sbjct: 293 SYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 352 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 353 RKLRHPSRSKKLKDYL 368 [13][TOP] >UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102 RepID=Q9L4T2_NOSP7 Length = 389 Score = 85.5 bits (210), Expect = 3e-15 Identities = 50/135 (37%), Positives = 78/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 254 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 313 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VLDSL P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 314 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 373 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 374 KLRHPNRNSVLKEYI 388 [14][TOP] >UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZJC3_NODSP Length = 391 Score = 85.5 bits (210), Expect = 3e-15 Identities = 50/135 (37%), Positives = 78/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 256 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 315 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VLDSL P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 316 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 376 KLRHPNRNSVLKEYI 390 [15][TOP] >UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803 RepID=RPOD_SYNY3 Length = 425 Score = 85.5 bits (210), Expect = 3e-15 Identities = 49/136 (36%), Positives = 80/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI E++ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 289 RRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 348 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 349 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 408 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 409 RKLRHPNRNSILKEYI 424 [16][TOP] >UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae RepID=RPOD_ANASP Length = 390 Score = 85.5 bits (210), Expect = 3e-15 Identities = 50/135 (37%), Positives = 78/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 255 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 314 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VLDSL P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 315 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 374 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 375 KLRHPNRNSVLKEYI 389 [17][TOP] >UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece RepID=C7QR23_CYAP0 Length = 379 Score = 85.1 bits (209), Expect = 4e-15 Identities = 49/136 (36%), Positives = 80/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G + ++ Sbjct: 243 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGENPEDEV 302 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 303 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 362 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 363 RKLRHPNRNSILKEYI 378 [18][TOP] >UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W0Y8_9CYAN Length = 380 Score = 85.1 bits (209), Expect = 4e-15 Identities = 49/135 (36%), Positives = 79/135 (58%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI +R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 245 RKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDQVS 304 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 305 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 364 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 365 KLRHPNRNSILKEYI 379 [19][TOP] >UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002 RepID=Q59965_SYNP2 Length = 375 Score = 84.7 bits (208), Expect = 5e-15 Identities = 49/135 (36%), Positives = 80/135 (59%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI ER+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 240 RKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDQVS 299 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 +LLR L++VLD+L +E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 300 KSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 359 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 360 KLRHPNRNSILKEYI 374 [20][TOP] >UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328 RepID=B5VWQ7_SPIMA Length = 387 Score = 84.7 bits (208), Expect = 5e-15 Identities = 49/135 (36%), Positives = 78/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 252 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 311 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 312 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 371 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 372 KLRHPNRNSILKEYI 386 [21][TOP] >UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YTZ3_9CYAN Length = 391 Score = 84.7 bits (208), Expect = 5e-15 Identities = 49/135 (36%), Positives = 78/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 256 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 315 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 316 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 376 KLRHPNRNSILKEYI 390 [22][TOP] >UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KDV7_CYAP7 Length = 376 Score = 84.3 bits (207), Expect = 6e-15 Identities = 49/136 (36%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 240 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 299 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 300 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 359 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 360 RKLRHPNRNSILKEYI 375 [23][TOP] >UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WS32_CYAA5 Length = 416 Score = 84.3 bits (207), Expect = 6e-15 Identities = 49/136 (36%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 280 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 400 RKLRHPNRNSILKEYI 415 [24][TOP] >UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CDC4_ACAM1 Length = 371 Score = 84.3 bits (207), Expect = 6e-15 Identities = 48/135 (35%), Positives = 79/135 (58%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 236 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 295 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 +LLR L+ VLD+L P+E V++ R+GLD +TL EI N++RE +R+ E KAL Sbjct: 296 KSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 355 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 356 KLRHPNRNSVLKEYI 370 [25][TOP] >UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C7J7_CROWT Length = 414 Score = 84.3 bits (207), Expect = 6e-15 Identities = 49/136 (36%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 278 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 337 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 338 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 397 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 398 RKLRHPNRNSILKEYI 413 [26][TOP] >UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AUJ5_9CHRO Length = 377 Score = 84.3 bits (207), Expect = 6e-15 Identities = 49/136 (36%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 241 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 300 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 301 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 360 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 361 RKLRHPNRNSILKEYI 376 [27][TOP] >UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ISY9_9CHRO Length = 416 Score = 84.3 bits (207), Expect = 6e-15 Identities = 49/136 (36%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 280 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 400 RKLRHPNRNSILKEYI 415 [28][TOP] >UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta RepID=Q8S9D0_GUITH Length = 490 Score = 84.3 bits (207), Expect = 6e-15 Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 2/138 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401 R PTEEEI E++ +S E+ R V +++QP LSL R + +++ ++ ++ + Sbjct: 306 RSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE-RPLKNDDDASQLSDFIEADQESPEEH 364 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 + ++LR L++V++SL P+E V+R R+GLD +TL EI +++RE VR+ E KA Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424 Query: 220 LMKLKLSARLDYLRRYVV 167 + KL+ R LR YV+ Sbjct: 425 IRKLRQPYRSSILRDYVL 442 [29][TOP] >UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP Length = 485 Score = 84.3 bits (207), Expect = 6e-15 Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 2/138 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401 R PTEEEI E++ +S E+ R V +++QP LSL R + +++ ++ ++ + Sbjct: 306 RSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE-RPLKNDDDASQLSDFIEADQESPEEH 364 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 + ++LR L++V++SL P+E V+R R+GLD +TL EI +++RE VR+ E KA Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424 Query: 220 LMKLKLSARLDYLRRYVV 167 + KL+ R LR YV+ Sbjct: 425 IRKLRQPYRSSILRDYVL 442 [30][TOP] >UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta RepID=Q98RZ3_GUITH Length = 460 Score = 84.0 bits (206), Expect = 8e-15 Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401 R PTEEEI +R+ +S E+ R+V +++QP LSL R + +++ ++ ++ + Sbjct: 289 RSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLE-RPLKNDDDTSQLSDFIEADQESPEEH 347 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 + ++LR L++V++SL P+E V+R R+GLD +TL EI +++RE VR+ E KA Sbjct: 348 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 407 Query: 220 LMKLKLSARLDYLRRYV 170 + KL+ R LR YV Sbjct: 408 IRKLRQPYRSSILRDYV 424 [31][TOP] >UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JS52_SYNJA Length = 404 Score = 83.6 bits (205), Expect = 1e-14 Identities = 49/135 (36%), Positives = 77/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ I+ E+ R + K++Q +SL + E+ + ++ G + R Sbjct: 269 RRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESEGETPEERVA 328 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL++L P+E V++ R+GLD +TL EI N++RE +R+ E KAL Sbjct: 329 KVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 389 KLRHPNRNSVLKEYI 403 [32][TOP] >UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JGK3_MICAN Length = 416 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/136 (35%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI ++ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 400 RKLRHPNRNSILKEYI 415 [33][TOP] >UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPM0_9SYNE Length = 404 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/135 (35%), Positives = 77/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 269 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDEVS 328 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 +LLR L+ VL +L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 329 KSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 389 KLRHPNRNSVLKEYI 403 [34][TOP] >UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820 RepID=B1PVV9_MICAE Length = 416 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/136 (35%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI ++ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 400 RKLRHPNRNSILKEYI 415 [35][TOP] >UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YBI5_MICAE Length = 416 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/136 (35%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI ++ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 400 RKLRHPNRNSILKEYI 415 [36][TOP] >UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa RepID=RPOD_MICAE Length = 416 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/136 (35%), Positives = 79/136 (58%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398 +R PTEEEI ++ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 400 RKLRHPNRNSILKEYI 415 [37][TOP] >UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani RepID=Q892T0_CLOTE Length = 366 Score = 82.4 bits (202), Expect = 2e-14 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398 R PT EEI + + IS +R R++ K +Q +SL + E+ + + DD L Sbjct: 230 REPTPEEIAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPAEAA 289 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +L+ L +VLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 290 AFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 349 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 350 RKLRHPSRSKKLKDYL 365 [38][TOP] >UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z904_DEHE1 Length = 520 Score = 81.6 bits (200), Expect = 4e-14 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R PT +EI + + PE+ R++ K SQ +SL S E+ + ++D L + Sbjct: 384 REPTPDEIAVEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ +D VL SL P+E V++ RFGL+ RTL E+ N++RE +R+ E KAL Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 504 RKLRHPSRSRKLKDYL 519 [39][TOP] >UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB Length = 403 Score = 81.6 bits (200), Expect = 4e-14 Identities = 48/135 (35%), Positives = 77/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ I+ E+ R + K++Q +SL + E+ + ++ G ++R Sbjct: 268 RKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDRVA 327 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL++L +E V++ R+GLD +TL EI N++RE +R+ E KAL Sbjct: 328 KVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 387 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 388 KLRHPNRNSVLKEYI 402 [40][TOP] >UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus RepID=Q7NHG5_GLOVI Length = 400 Score = 81.3 bits (199), Expect = 5e-14 Identities = 48/135 (35%), Positives = 78/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 265 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDKVA 324 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL++L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 325 KNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 384 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 385 KLRHPNRNSVLKEYI 399 [41][TOP] >UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKT5_MOOTA Length = 361 Score = 81.3 bits (199), Expect = 5e-14 Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + I ER R++ K +Q +SL + E+ + ++D ++ + Sbjct: 225 REPTPEEIAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIED-----EDAQA 279 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LLR L++VL+SL P+E V+R RFGLD RTL E+ ++RE +R+ Sbjct: 280 PAEAASFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQI 339 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 340 EAKALRKLRHPSRSKKLKDYL 360 [42][TOP] >UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10UV2_TRIEI Length = 386 Score = 81.3 bits (199), Expect = 5e-14 Identities = 48/135 (35%), Positives = 76/135 (56%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI + ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 251 RKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDEVS 310 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL+SL P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 311 KNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 370 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 371 KLRHPNRNSILKEYI 385 [43][TOP] >UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides RepID=A5FRQ7_DEHSB Length = 520 Score = 81.3 bits (199), Expect = 5e-14 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R PT +EI + + PE+ R++ K SQ +SL S E+ + ++D L + Sbjct: 384 REPTPDEIALEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ +D VL SL P+E V++ RFGL+ RTL E+ N++RE +R+ E KAL Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 504 RKLRHPSRSRKLKDYL 519 [44][TOP] >UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 81.3 bits (199), Expect = 5e-14 Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R PT EEI + + I +R R++ K +Q +SL + E+ + ++D + Sbjct: 237 REPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPADAA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L P+E V+R RFGLD RTL E+ N ++RE +R+ E KAL Sbjct: 297 SFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSRKLKDFL 372 [45][TOP] >UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS RepID=A8CRQ1_9CHLR Length = 520 Score = 81.3 bits (199), Expect = 5e-14 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R PT +EI + + PE+ R++ K SQ +SL S E+ + ++D L + Sbjct: 384 REPTPDEIALEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ +D VL SL P+E V++ RFGL+ RTL E+ N++RE +R+ E KAL Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 504 RKLRHPSRSRKLKDYL 519 [46][TOP] >UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype M18 RepID=Q8P1I9_STRP8 Length = 369 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [47][TOP] >UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype M3 RepID=Q8K811_STRP3 Length = 369 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [48][TOP] >UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DL79_THEEB Length = 418 Score = 80.9 bits (198), Expect = 7e-14 Identities = 47/135 (34%), Positives = 78/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI +R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 283 RKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 342 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL +L P+E V++ R+GLD +TL EI N++RE +R+ E KAL Sbjct: 343 KHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 402 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 403 KLRHPNRNSVLKEYI 417 [49][TOP] >UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG Length = 369 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [50][TOP] >UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp. zooepidemicus H70 RepID=C0MGY0_STRS7 Length = 369 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [51][TOP] >UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi 4047 RepID=C0M883_STRE4 Length = 369 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [52][TOP] >UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J RepID=B9DRV6_STRU0 Length = 369 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [53][TOP] >UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. zooepidemicus MGCS10565 RepID=B4U2H7_STREM Length = 369 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [54][TOP] >UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes RepID=A2RFA3_STRPG Length = 369 Score = 80.9 bits (198), Expect = 7e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [55][TOP] >UniRef100_A4VWA5 RNA polymerase sigma factor n=6 Tax=Streptococcus suis RepID=A4VWA5_STRSY Length = 372 Score = 80.9 bits (198), Expect = 7e-14 Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++PE+ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 237 PTPEQIAERMDMTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 296 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 297 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 356 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 357 LRHPSRSKPLRDFI 370 [56][TOP] >UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC 6301 RepID=Q5N3Q1_SYNP6 Length = 399 Score = 80.5 bits (197), Expect = 9e-14 Identities = 48/135 (35%), Positives = 76/135 (56%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 264 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVA 323 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL +L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 384 KLRHPNRNSILKEYI 398 [57][TOP] >UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DV68_SULAA Length = 586 Score = 80.5 bits (197), Expect = 9e-14 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398 R PT EEI ++V + E+ + + + SQ +SL + T EE + ++D L + Sbjct: 448 REPTPEEIAKKVGMPAEKVKKILRTSQEPISLETPIGTDEETHLGDFIEDKSVLSPEAHM 507 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LR+ LD+VL +L +E V+R RFGL+ + TL ++ ++RE +R+ E KAL Sbjct: 508 LKNALRMQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKAL 567 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R YL+ ++ Sbjct: 568 RKLRHPHRAKYLKPFI 583 [58][TOP] >UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE Length = 369 Score = 80.5 bits (197), Expect = 9e-14 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRHPSRSKQLRDFI 367 [59][TOP] >UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus PCC 7942 RepID=RPOD1_SYNE7 Length = 399 Score = 80.5 bits (197), Expect = 9e-14 Identities = 48/135 (35%), Positives = 76/135 (56%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++ Sbjct: 264 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVA 323 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL +L P+E V+R R+GLD +TL EI N++RE +R+ E KAL Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 384 KLRHPNRNSILKEYI 398 [60][TOP] >UniRef100_Q7VQR2 RNA polymerase sigma factor n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VQR2_BLOFL Length = 617 Score = 80.1 bits (196), Expect = 1e-13 Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 7/140 (5%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLD-------G 410 PT EE+ ER+ +S ++ R V K ++ +S+ + E+ + ++D LD Sbjct: 481 PTPEELAERMFMSEDKIRKVLKIAKEPVSMETPIGDDEDSHLGDFIEDTNLDLPLDSATS 540 Query: 409 DNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHE 230 DN LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E Sbjct: 541 DN------LRAATNDVLSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 594 Query: 229 VKALMKLKLSARLDYLRRYV 170 KAL KL+ +R + L+ ++ Sbjct: 595 AKALRKLRHPSRSEILKSFL 614 [61][TOP] >UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB92_BREBN Length = 376 Score = 80.1 bits (196), Expect = 1e-13 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R P EEI E++ ++PE+ R++ K +Q +SL + ++ + ++D L+ + Sbjct: 240 REPMPEEIAEKMDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAA 299 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 300 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 359 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 360 RKLRHPSRSKRLKDFL 375 [62][TOP] >UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1 RepID=C1PEH1_BACCO Length = 377 Score = 80.1 bits (196), Expect = 1e-13 Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R PT EEI E + ISP++ R++ K +Q +SL + ++ + ++D + Sbjct: 241 REPTPEEIAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHA 300 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 301 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 361 RKLRHPSRSKRLKDFL 376 [63][TOP] >UniRef100_UPI0001BB55B2 RNA polymerase sigma factor RpoD n=1 Tax=Streptococcus sp. 2_1_36FAA RepID=UPI0001BB55B2 Length = 370 Score = 79.7 bits (195), Expect = 1e-13 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 355 LRHPSRSKPLRDFI 368 [64][TOP] >UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24T06_DESHY Length = 367 Score = 79.7 bits (195), Expect = 1e-13 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI ++ IS ER R++ K +Q +SL + E+ + + D + Sbjct: 231 REPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAA 290 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L++VL++L P+E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 291 SFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKAL 350 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 351 RKLRHPSRSKKLKDYL 366 [65][TOP] >UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HPM3_CYAP4 Length = 378 Score = 79.7 bits (195), Expect = 1e-13 Identities = 47/135 (34%), Positives = 77/135 (57%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++ Sbjct: 243 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 302 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL +L P+E V++ R+GLD +TL EI N++RE +R+ E KAL Sbjct: 303 KNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 362 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 363 KLRHPNRNSVLKEYI 377 [66][TOP] >UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FTY1_DESHD Length = 372 Score = 79.7 bits (195), Expect = 1e-13 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI ++ IS ER R++ K +Q +SL + E+ + + D + Sbjct: 236 REPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAA 295 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L++VL++L P+E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 296 SFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKAL 355 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 356 RKLRHPSRSKKLKDYL 371 [67][TOP] >UniRef100_A8AXP5 RNA polymerase sigma factor n=1 Tax=Streptococcus gordonii str. Challis RepID=A8AXP5_STRGC Length = 370 Score = 79.7 bits (195), Expect = 1e-13 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 355 LRHPSRSKPLRDFI 368 [68][TOP] >UniRef100_A3CM49 RNA polymerase sigma factor n=1 Tax=Streptococcus sanguinis SK36 RepID=A3CM49_STRSV Length = 370 Score = 79.7 bits (195), Expect = 1e-13 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 355 LRHPSRSKPLRDFI 368 [69][TOP] >UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3 Tax=Geobacillus RepID=C9RYK5_9BACI Length = 375 Score = 79.7 bits (195), Expect = 1e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA 298 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [70][TOP] >UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3M7_9CLOT Length = 363 Score = 79.7 bits (195), Expect = 1e-13 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI E + I ER R++ K SQ +SL + E+ + + D +N Sbjct: 227 REPSPEEIAEEMDIPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----ENVPV 281 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ LD+VL +L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 282 PADAAAFTLLKEQLDEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQI 341 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 342 EAKALRKLRHPSRSRKLKDYL 362 [71][TOP] >UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G307_9FIRM Length = 382 Score = 79.7 bits (195), Expect = 1e-13 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + + ER R++ K SQ +SL + E+ + + D DN Sbjct: 246 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 300 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ LD+VLD+L +E V+R RFG+D RTL E+ +++RE +R+ Sbjct: 301 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQI 360 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 361 EAKALRKLRHPSRSRKLRDYL 381 [72][TOP] >UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPY6_OCEIH Length = 380 Score = 79.3 bits (194), Expect = 2e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI E + + P++ RD+ K +Q +SL + ++ + ++D + + Sbjct: 244 REPTPEEIGEEMELGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHA 303 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 304 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 363 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 364 RKLRHPSRSKRLKDFL 379 [73][TOP] >UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG 18311 RepID=Q5M3E3_STRT2 Length = 369 Score = 79.3 bits (194), Expect = 2e-13 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R L+ ++ Sbjct: 354 LRHPSRSKQLKDFI 367 [74][TOP] >UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus RepID=Q03JL2_STRTD Length = 369 Score = 79.3 bits (194), Expect = 2e-13 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R L+ ++ Sbjct: 354 LRHPSRSKQLKDFI 367 [75][TOP] >UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70 RepID=C5D4R8_GEOSW Length = 374 Score = 79.3 bits (194), Expect = 2e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 238 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 297 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 298 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 358 RKLRHPSRSKRLKDFL 373 [76][TOP] >UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC 27405 RepID=A3DDV0_CLOTH Length = 358 Score = 79.3 bits (194), Expect = 2e-13 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + +++ E+ R++ K SQ +SL + E+ + + D + Sbjct: 222 REPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAA 281 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 282 AFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 341 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 342 RKLRHPSRSKKLKDYL 357 [77][TOP] >UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM Length = 358 Score = 79.3 bits (194), Expect = 2e-13 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + +++ E+ R++ K SQ +SL + E+ + + D + Sbjct: 222 REPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAA 281 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 282 AFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 341 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 342 RKLRHPSRSKKLKDYL 357 [78][TOP] >UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QPZ7_9BACI Length = 377 Score = 79.3 bits (194), Expect = 2e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 241 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 300 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 301 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 361 RKLRHPSRSKRLKDFL 376 [79][TOP] >UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126 RepID=C2LRD4_STRSL Length = 369 Score = 79.3 bits (194), Expect = 2e-13 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R L+ ++ Sbjct: 354 LRHPSRSKQLKDFI 367 [80][TOP] >UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN Length = 375 Score = 79.3 bits (194), Expect = 2e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 298 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [81][TOP] >UniRef100_B2DVB6 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae CDC0288-04 RepID=B2DVB6_STRPN Length = 369 Score = 79.3 bits (194), Expect = 2e-13 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD++LD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRQPSRSKPLRDFI 367 [82][TOP] >UniRef100_P0A4J0 RNA polymerase sigma factor rpoD n=24 Tax=Streptococcus pneumoniae RepID=RPOD_STRR6 Length = 369 Score = 79.3 bits (194), Expect = 2e-13 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD++LD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR ++ Sbjct: 354 LRQPSRSKPLRDFI 367 [83][TOP] >UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I6N1_CLOCE Length = 359 Score = 79.0 bits (193), Expect = 3e-13 Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P +EI + + +S ++ R++ K SQ +SL + E+ + + D D+ Sbjct: 223 REPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 277 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 278 PAEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 337 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 338 EAKALRKLRHPSRSKKLKDYL 358 [84][TOP] >UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM02_AKKM8 Length = 688 Score = 79.0 bits (193), Expect = 3e-13 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI E +H+ ER R V K +Q +SL + +++ ++D + Sbjct: 548 REPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAAENPMEEA 607 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 + L+ + DVLD+L +E VI QRFGL RTL E+ +++RE +R+ E KAL Sbjct: 608 SFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKAL 667 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R+ ++ ++ Sbjct: 668 RKLRHPTRISKIKGFL 683 [85][TOP] >UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1Z3_NATTJ Length = 360 Score = 79.0 bits (193), Expect = 3e-13 Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E++ +S ++ R++ K +Q +SL + ++ + ++D + + Sbjct: 224 REPLPEEIAEQMDMSEDKVREILKIAQEPVSLETPIGEEDDSHLGDFIED-----QDAKP 278 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L++VLDSL P+E V+R RFGLD RTL E+ + ++RE +R+ Sbjct: 279 PADAAAFELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQI 338 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ R L+ Y+ Sbjct: 339 EAKALRKLRHPMRSKRLKDYL 359 [86][TOP] >UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LTA9_9FIRM Length = 375 Score = 79.0 bits (193), Expect = 3e-13 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI E + IS ER R++ K +Q +SL + E+ + ++D Sbjct: 239 REPSPEEIAEAMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 298 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L++VLD+L +E V+R RFGLD RTL E+ N ++RE +R+ E KAL Sbjct: 299 SFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSRKLKDFL 374 [87][TOP] >UniRef100_O33662 RNA polymerase sigma factor rpoD n=2 Tax=Streptococcus mutans RepID=RPOD_STRMU Length = 371 Score = 79.0 bits (193), Expect = 3e-13 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 236 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 295 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ +++RE +R+ E KAL K Sbjct: 296 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRK 355 Query: 211 LKLSARLDYLRRYV 170 L+ +R LR +V Sbjct: 356 LRHPSRSKQLRDFV 369 [88][TOP] >UniRef100_Q896X6 RNA polymerase sigma factor n=1 Tax=Clostridium tetani RepID=Q896X6_CLOTE Length = 282 Score = 78.6 bits (192), Expect = 3e-13 Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI E IS E+ + + SQ +SL + E+ + + D +++ Sbjct: 146 REPTEEEIAETAEISIEKIKRIYNVSQDPVSLETPVGENEDTILQNFISDDRYLPEDKVT 205 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGD-RTLGEIASNLNISREMVRKHEVKAL 218 +L L +VL +L P+E ++R R+GL G G+ RTL EI N++RE +R+ E +A+ Sbjct: 206 EQMLGDTLSNVLSTLSPREERIVRLRYGLVGDGESRTLEEIGREFNLTRERIRQIEARAI 265 Query: 217 MKLKLSARLDYLRRY 173 KL+ R+ L+ Y Sbjct: 266 RKLRHPTRIKKLQGY 280 [89][TOP] >UniRef100_Q6LV14 RNA polymerase sigma factor n=1 Tax=Photobacterium profundum RepID=Q6LV14_PHOPR Length = 612 Score = 78.6 bits (192), Expect = 3e-13 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L Sbjct: 475 REPIPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAA 534 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 535 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 594 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R D LR ++ Sbjct: 595 RKLRHPSRSDVLRSFL 610 [90][TOP] >UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp. YO3AOP1 RepID=B2V7P9_SULSY Length = 590 Score = 78.6 bits (192), Expect = 3e-13 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398 R PT EEI ++ + ++ R + + SQ +SL + + EE + ++D L + Sbjct: 452 REPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHM 511 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LRL LD+VL +L +E V+R RFGL+ + TL ++ ++RE +R+ E KAL Sbjct: 512 LKQALRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKAL 571 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R YL+ ++ Sbjct: 572 RKLRHPHRAKYLKPFI 587 [91][TOP] >UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae RepID=Q3D699_STRAG Length = 369 Score = 78.6 bits (192), Expect = 3e-13 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R L+ ++ Sbjct: 354 LRHPSRSKQLKDFM 367 [92][TOP] >UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B RepID=Q3CZ52_STRAG Length = 369 Score = 78.6 bits (192), Expect = 3e-13 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 L+ +R L+ ++ Sbjct: 354 LRHPSRSKQLKDFM 367 [93][TOP] >UniRef100_Q1Z4S6 RNA polymerase sigma factor n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z4S6_PHOPR Length = 612 Score = 78.6 bits (192), Expect = 3e-13 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L Sbjct: 475 REPIPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAA 534 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 535 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 594 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R D LR ++ Sbjct: 595 RKLRHPSRSDVLRSFL 610 [94][TOP] >UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H3D6_9FIRM Length = 359 Score = 78.6 bits (192), Expect = 3e-13 Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD--GGLDGDNR 401 R PT EEI R+ + P+R R++ + +Q +SL + E+ + + D G+ D Sbjct: 222 REPTAEEIAVRLDMEPDRVRELLQLAQDPISLETPVGEEEDAHLEDFIQDEEAGVPVDEA 281 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 + LLR L +VL SL P+E V+ RFGL+ RTL E+ N++RE +R+ E KA Sbjct: 282 GRE-LLRRELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKA 340 Query: 220 LMKLKLSARLDYLRRYV 170 L KL+ +R LR Y+ Sbjct: 341 LRKLRHPSRAKRLRDYL 357 [95][TOP] >UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65H81_BACLD Length = 373 Score = 78.2 bits (191), Expect = 4e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [96][TOP] >UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032 RepID=A8FFA5_BACP2 Length = 373 Score = 78.2 bits (191), Expect = 4e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [97][TOP] >UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z6T5_BACA2 Length = 373 Score = 78.2 bits (191), Expect = 4e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [98][TOP] >UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGK6_9FIRM Length = 375 Score = 78.2 bits (191), Expect = 4e-13 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + + +S ER R++ K SQ +SL + E+ + + D DN Sbjct: 239 REPTPEEIAKEMDMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 293 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 294 PADAAAFTLLKEQLVEVLSTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 353 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 354 EAKALRKLRHPSRSRKLKDYL 374 [99][TOP] >UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBC7_EUBSP Length = 371 Score = 78.2 bits (191), Expect = 4e-13 Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI ++ + ER R++ K SQ +SL + E+ + + D DN Sbjct: 235 REPTPEEIAAQLDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 289 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+ Sbjct: 290 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 349 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 350 EAKALRKLRHPSRSRKLRDYL 370 [100][TOP] >UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis RepID=RPOD_BACSU Length = 371 Score = 78.2 bits (191), Expect = 4e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 235 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 294 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 295 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 354 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 355 RKLRHPSRSKRLKDFL 370 [101][TOP] >UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans RepID=RPOD_BACHD Length = 372 Score = 78.2 bits (191), Expect = 4e-13 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R P+ EE+ E + ++PE+ R++ K +Q +SL + ++ + ++D L + Sbjct: 236 REPSPEEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAA 295 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 296 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 356 RKLRHPSRSKRLKDFL 371 [102][TOP] >UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YL80_EXIS2 Length = 361 Score = 77.8 bits (190), Expect = 6e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG-DNRR 398 R PT EEI + + I+PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 225 REPTPEEISKEMEITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAA 284 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 285 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 344 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 345 RKLRHPSRSKRLKDFL 360 [103][TOP] >UniRef100_Q2BZN9 RNA polymerase sigma factor n=1 Tax=Photobacterium sp. SKA34 RepID=Q2BZN9_9GAMM Length = 616 Score = 77.8 bits (190), Expect = 6e-13 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAA 538 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 539 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R D LR ++ Sbjct: 599 RKLRHPSRSDVLRSFL 614 [104][TOP] >UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B288_9BACI Length = 374 Score = 77.8 bits (190), Expect = 6e-13 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI E + ++P++ R++ K +Q +SL + ++ + ++D + Sbjct: 238 REPTPEEIAEDMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA 297 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 298 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 358 RKLRHPSRSKRLKDFL 373 [105][TOP] >UniRef100_Q1ZM24 RNA polymerase sigma factor n=1 Tax=Photobacterium angustum S14 RepID=Q1ZM24_PHOAS Length = 616 Score = 77.8 bits (190), Expect = 6e-13 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAA 538 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 539 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R D LR ++ Sbjct: 599 RKLRHPSRSDVLRSFL 614 [106][TOP] >UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=C4CH81_9CHLR Length = 538 Score = 77.8 bits (190), Expect = 6e-13 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI + + P++ R++ K SQ +SL E+ + ++D L + Sbjct: 402 REPTSEEIAAEMGLPPDKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAA 461 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ +DDVL SL +E V+ RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 462 SLKLLKEQVDDVLGSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKAL 521 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R LR Y+ Sbjct: 522 RKLRHPSRSKKLRDYL 537 [107][TOP] >UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C397_9CLOT Length = 370 Score = 77.8 bits (190), Expect = 6e-13 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + + ER R++ K SQ +SL + E+ + + D DN Sbjct: 234 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+ Sbjct: 289 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 348 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 349 EAKALRKLRHPSRSRKLRDYL 369 [108][TOP] >UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BEL2_9FIRM Length = 369 Score = 77.8 bits (190), Expect = 6e-13 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + + ER R++ K SQ +SL + E+ + + D DN Sbjct: 233 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 287 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+ Sbjct: 288 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 347 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 348 EAKALRKLRHPSRSRKLRDYL 368 [109][TOP] >UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=UPI0001966A7F Length = 364 Score = 77.4 bits (189), Expect = 7e-13 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 2/135 (1%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV--DDGGLDGDNRRQ 395 P+ EEI ER+ +S ++ R++ + +Q +SL + E+ + + DD + + Q Sbjct: 230 PSAEEIAERLDMSVDKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQ 289 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LL+ L DVL +L P+E V+R RFGL+ RTL E+ N++RE +R+ E KAL Sbjct: 290 -TLLKEQLADVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALR 348 Query: 214 KLKLSARLDYLRRYV 170 KL+ +R LR ++ Sbjct: 349 KLRHPSRSKKLRDFL 363 [110][TOP] >UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z4Y6_EUBE2 Length = 434 Score = 77.4 bits (189), Expect = 7e-13 Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI E + I ER R++ K SQ +SL + E+ + + D DN Sbjct: 298 REPSPEEIAENMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 352 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VL +L +E V+R RFG+D RTL E+ N++RE +R+ Sbjct: 353 PAEAAASTLLKEQLVEVLGTLTEREQKVLRLRFGMDDGRARTLEEVGKEFNVTRERIRQI 412 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 413 EAKALRKLRHPSRSRKLRDYL 433 [111][TOP] >UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GH73_ANOFW Length = 372 Score = 77.4 bits (189), Expect = 7e-13 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D D + + Sbjct: 236 REPSPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ--DATSPAE 293 Query: 394 PA---LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224 A LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E K Sbjct: 294 HAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK 353 Query: 223 ALMKLKLSARLDYLRRYV 170 AL KL+ +R L+ ++ Sbjct: 354 ALRKLRHPSRSKRLKDFL 371 [112][TOP] >UniRef100_B5E4I8 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae G54 RepID=B5E4I8_STRP4 Length = 369 Score = 77.4 bits (189), Expect = 7e-13 Identities = 43/134 (32%), Positives = 78/134 (58%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ + Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 +LR LD++LD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353 Query: 211 LKLSARLDYLRRYV 170 + +R LR ++ Sbjct: 354 XRQPSRSKPLRDFI 367 [113][TOP] >UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L8C6_RUMHA Length = 330 Score = 77.4 bits (189), Expect = 7e-13 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E +++S ER R++ K SQ +SL + E+ + + D DN Sbjct: 194 REPHPEEIAEEMNMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 248 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 249 PADAAAFTLLKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 308 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 309 EAKALRKLRHPSRSRKLKDYL 329 [114][TOP] >UniRef100_C8W713 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W713_ATOPD Length = 455 Score = 77.4 bits (189), Expect = 7e-13 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI + +SP+R R++ K SQ +SL + E+ + ++D + + Sbjct: 318 RDPTPEEIGSEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAVAPPDAA 377 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++LR L+ VLDSL +E VI+ RFGL+ RTL E+ ++RE +R+ E K L Sbjct: 378 SDSMLREQLEQVLDSLADRERKVIKFRFGLEDGHPRTLEEVGKEFGVTRERIRQIESKTL 437 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 438 AKLRHPSRSGRLKDYM 453 [115][TOP] >UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZZ1_ABIDE Length = 372 Score = 77.4 bits (189), Expect = 7e-13 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398 R P EEI + +++ PE+ R + K +Q +S + E+ I + DD + Sbjct: 236 REPQPEEIGKELNMEPEKVRSIMKIAQEPVSFETPIGEEEDSHIGDFIPDDSNMAPVEAA 295 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A+L+ L++VLDSL +E VI+ RFGL+ RTL E+ N++RE +R+ E KAL Sbjct: 296 THAILKEQLEEVLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKAL 355 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 356 RKLRQPSRSRKLKDYL 371 [116][TOP] >UniRef100_C4FWR1 RNA polymerase sigma factor n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWR1_9FIRM Length = 379 Score = 77.4 bits (189), Expect = 7e-13 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R PT EEI + + E+ R++ K +Q +SL + ++ + ++D G + + Sbjct: 243 REPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEGAMSPEVFT 302 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ALLR L+DVLD+L +E V+R RFGLD RTL ++ ++RE +R+ E KAL Sbjct: 303 SSALLREQLEDVLDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKAL 362 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 363 RKLRHPSRSKQLKDFL 378 [117][TOP] >UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CQD9_9FIRM Length = 374 Score = 77.4 bits (189), Expect = 7e-13 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + + +S +R R++ K SQ +SL + E+ + + D DN Sbjct: 238 REPTPEEIAKEMEMSVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 292 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 293 PADAAAFTLLKEQLVEVLSTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 352 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 353 EAKALRKLRHPSRSRKLKDYL 373 [118][TOP] >UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPB3_9FIRM Length = 368 Score = 77.4 bits (189), Expect = 7e-13 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + IS ER R++ K +Q +SL + E+ + ++D Sbjct: 232 REPTPEEIAREMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 291 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L++VL++L P+E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 292 SFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKAL 351 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 352 RKLRHPSRSKKLKDFL 367 [119][TOP] >UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LQB0_PICSI Length = 495 Score = 77.4 bits (189), Expect = 7e-13 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHI--TTEEEFINGVVDDGGLDGDN 404 +R PT+EE+ E IS R R VT+ S+ SL R + +E+F V D + Sbjct: 357 KRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSL-DRCVGKDMDEKFSEIVADTNSESTET 415 Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224 L + LD VLD+L +E V+R R+GLD ++L E+ N ++SRE VR+ E+K Sbjct: 416 IVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMK 475 Query: 223 ALMKLKLSARLDYLRRYV 170 A+ KL+ + R +L+ Y+ Sbjct: 476 AMRKLRQNHRTQHLKHYL 493 [120][TOP] >UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 77.4 bits (189), Expect = 7e-13 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%) Frame = -2 Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHI--TTEEEFINGVVDDGGLDGDN 404 +R PT+EE+ E IS R R VT+ S+ SL R + +E+F V D + Sbjct: 454 KRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSL-DRCVGKDMDEKFSEIVADTNSESTET 512 Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224 L + LD VLD+L +E V+R R+GLD ++L E+ N ++SRE VR+ E+K Sbjct: 513 IVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMK 572 Query: 223 ALMKLKLSARLDYLRRYV 170 A+ KL+ + R +L+ Y+ Sbjct: 573 AMRKLRQNHRTQHLKHYL 590 [121][TOP] >UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851148 Length = 337 Score = 77.0 bits (188), Expect = 1e-12 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 201 REPSPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHA 260 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 261 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 320 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 321 RKLRHPSRSKRLKDFL 336 [122][TOP] >UniRef100_UPI00017446E0 RNA polymerase sigma factor RpoD n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017446E0 Length = 576 Score = 77.0 bits (188), Expect = 1e-12 Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 3/131 (2%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSR--HITTEEEFINGVVDDGGLDGDNR 401 R PT +EI E +H+ ER V + SQ +SL ++ + EF + + D+ + Sbjct: 437 RDPTPDEIAEEIHLPVERVNAVLRMSQQPVSLQTKVGDSDGDTEFGDFIEDNTSVSPMEL 496 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGL-DGKGDRTLGEIASNLNISREMVRKHEVK 224 LLR L DVLDSL +E V+ QRFGL DG G RTL E+ +++RE +R+ E K Sbjct: 497 TAMNLLRDKLKDVLDSLTDRERAVLEQRFGLVDGSG-RTLEEVGRQFHVTRERIRQIEAK 555 Query: 223 ALMKLKLSARL 191 AL KL+ R+ Sbjct: 556 ALRKLRHPTRI 566 [123][TOP] >UniRef100_Q493Y1 RNA polymerase sigma factor n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q493Y1_BLOPB Length = 611 Score = 77.0 bits (188), Expect = 1e-12 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 7/140 (5%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLD-------G 410 PT EE+ ER+ +S ++ R V K ++ +S+ + E+ + ++D D Sbjct: 476 PTPEELAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATS 535 Query: 409 DNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHE 230 DN LR A D+L L P+E V+R RFG+D D TL E+ +++RE +R+ E Sbjct: 536 DN------LRTATHDILSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 589 Query: 229 VKALMKLKLSARLDYLRRYV 170 KAL KL+ +R + LR ++ Sbjct: 590 AKALRKLRHPSRSEILRSFL 609 [124][TOP] >UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HTI2_LYSSC Length = 375 Score = 77.0 bits (188), Expect = 1e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 298 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [125][TOP] >UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98 RepID=A7GSY8_BACCN Length = 373 Score = 77.0 bits (188), Expect = 1e-12 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPTPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [126][TOP] >UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus sphaericus RepID=O52862_BACSH Length = 140 Score = 77.0 bits (188), Expect = 1e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 4 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 63 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 64 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 123 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 124 RKLRHPSRSKRLKDFL 139 [127][TOP] >UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C3P6_9FIRM Length = 415 Score = 77.0 bits (188), Expect = 1e-12 Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNR 401 R PT EEI ER+ ++PE+ R++ K S +SL + ++ + ++D G + D+ Sbjct: 277 REPTAEEIAERIDGMTPEKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGVMSPDDY 336 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 LL+ L++VL L +E V+R RFGLD RTL E+ +++RE +R+ E KA Sbjct: 337 AANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKA 396 Query: 220 LMKLKLSARLDYLRRYV 170 L KLK +R L+ ++ Sbjct: 397 LRKLKHPSRSKRLKDFL 413 [128][TOP] >UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0ME78_9FIRM Length = 370 Score = 77.0 bits (188), Expect = 1e-12 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + I +R R++ K SQ +SL + E+ + + D DN Sbjct: 234 REPLPEEIAEEMDIPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 289 PADAAAFTLLKEQLSEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQI 348 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 349 EAKALRKLRHPSRSRKLKDYL 369 [129][TOP] >UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SFN0_9FIRM Length = 360 Score = 77.0 bits (188), Expect = 1e-12 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV--DDGGLDGDNR 401 R PT EEI + + P++ R++ + SQ +SL + E+ + + +D G+ D Sbjct: 223 REPTVEEIAAALDMEPDKVRELLQLSQEPISLETPVGEEEDAHLEDFIQDEDAGVPVDEA 282 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 + LLR L VL SL P+E VI RFGL+ RTL E+ N++RE VR+ E KA Sbjct: 283 GRQ-LLRRELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKA 341 Query: 220 LMKLKLSARLDYLRRYV 170 L KL+ +R LR Y+ Sbjct: 342 LRKLRHPSRAKLLRDYL 358 [130][TOP] >UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67RX0_SYMTH Length = 388 Score = 76.6 bits (187), Expect = 1e-12 Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + I ER R++ K +Q +SL + E+ + ++D Sbjct: 252 REPTPEEIAAVMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 311 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L++VL+SL P+E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 312 SFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKAL 371 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 372 RKLRHPSRSKKLKDYL 387 [131][TOP] >UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WHD0_BACSK Length = 373 Score = 76.6 bits (187), Expect = 1e-12 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EE+ + + +SP++ R++ K +Q +SL + ++ + ++D L + Sbjct: 237 REPTPEEVGKEMDLSPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [132][TOP] >UniRef100_Q5E2J7 RNA polymerase sigma factor n=1 Tax=Vibrio fischeri ES114 RepID=Q5E2J7_VIBF1 Length = 613 Score = 76.6 bits (187), Expect = 1e-12 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ + Sbjct: 476 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 535 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 L+ A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 536 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 596 RKLRHPSRSEVLRSFL 611 [133][TOP] >UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Z9_EXISA Length = 364 Score = 76.6 bits (187), Expect = 1e-12 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R P+ EEI + + ++PE+ R++ K +Q +SL + ++ + ++D + + Sbjct: 228 REPSPEEIAKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAA 287 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 288 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 347 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 348 RKLRHPSRSKRLKDFL 363 [134][TOP] >UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 76.6 bits (187), Expect = 1e-12 Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 2/129 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING--VVDDGGLDGDNR 401 R PT EEI E + + PE+ + +A+Q +SL + ++ E+E G + D+ + Sbjct: 203 RQPTPEEIAEAMSVQPEKIAQIVRAAQRAVSL-DQPLSEEDETSLGDLIADELAQSPEEL 261 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 + +L+R + ++L+ L P+E LV++ R+GL RTL E+ L ISRE VR+ E +A Sbjct: 262 AEESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEA 321 Query: 220 LMKLKLSAR 194 L KL+ AR Sbjct: 322 LRKLRRIAR 330 [135][TOP] >UniRef100_B6EM18 RNA polymerase sigma factor n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EM18_ALISL Length = 610 Score = 76.6 bits (187), Expect = 1e-12 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ + Sbjct: 473 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 532 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 L+ A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 533 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 592 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 593 RKLRHPSRSEVLRSFL 608 [136][TOP] >UniRef100_B5FB86 RNA polymerase sigma factor n=1 Tax=Vibrio fischeri MJ11 RepID=B5FB86_VIBFM Length = 613 Score = 76.6 bits (187), Expect = 1e-12 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ + Sbjct: 476 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 535 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 L+ A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 536 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 596 RKLRHPSRSEVLRSFL 611 [137][TOP] >UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7B9_DESRM Length = 367 Score = 76.6 bits (187), Expect = 1e-12 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI + + IS E+ R++ K +Q +SL + E+ + ++D + R Sbjct: 231 REPSPEEIAKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDA-----DARA 285 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LLR LD+VL +L +E V+R RFGLD RTL E+ ++RE +R+ Sbjct: 286 PAEEASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 345 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E K L KL+ +R L+ Y+ Sbjct: 346 EAKTLRKLRHPSRSKKLKDYL 366 [138][TOP] >UniRef100_A2RIN0 RNA polymerase sigma factor n=2 Tax=Lactococcus lactis subsp. cremoris RepID=A2RIN0_LACLM Length = 447 Score = 76.6 bits (187), Expect = 1e-12 Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407 R P+ EEI + +H++P++ R+V K +Q +SL + ++ +FI V + +D Sbjct: 312 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 371 Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227 NR LLR LD+V+D+L +E V+R RFGLD TL ++ ++RE +R+ E Sbjct: 372 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 428 Query: 226 KALMKLKLSARLDYLRRYV 170 KA+ KL+ R LR ++ Sbjct: 429 KAIKKLRHPRRSKPLRDFM 447 [139][TOP] >UniRef100_B5WPE5 RNA polymerase sigma factor n=1 Tax=Burkholderia sp. H160 RepID=B5WPE5_9BURK Length = 665 Score = 76.6 bits (187), Expect = 1e-12 Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 1/129 (0%) Frame = -2 Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377 + ER+ +S E+ R + K ++ +SL + + + +++D + + A LR Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSLETPVGDDGDATLGDMIEDAAVSSPADAAMQADLRA 594 Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197 A+DD LDSL P+E V+R R+G++ K D TL E+ +++RE +R+ E KA+ KL + Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654 Query: 196 RLDYLRRYV 170 R D L+ ++ Sbjct: 655 RADRLKSFL 663 [140][TOP] >UniRef100_P58290 RNA polymerase sigma factor rpoD (Fragment) n=1 Tax=Lactococcus lactis subsp. cremoris RepID=RPOD_LACLC Length = 364 Score = 76.6 bits (187), Expect = 1e-12 Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407 R P+ EEI + +H++P++ R+V K +Q +SL + ++ +FI V + +D Sbjct: 229 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 288 Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227 NR LLR LD+V+D+L +E V+R RFGLD TL ++ ++RE +R+ E Sbjct: 289 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 345 Query: 226 KALMKLKLSARLDYLRRYV 170 KA+ KL+ R LR ++ Sbjct: 346 KAIKKLRHPRRSKPLRDFM 364 [141][TOP] >UniRef100_Q04506 RNA polymerase sigma factor rpoD n=1 Tax=Lactococcus lactis subsp. lactis RepID=RPOD_LACLA Length = 386 Score = 76.6 bits (187), Expect = 1e-12 Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407 R P+ EEI + +H++P++ R+V K +Q +SL + ++ +FI V + +D Sbjct: 251 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 310 Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227 NR LLR LD+V+D+L +E V+R RFGLD TL ++ ++RE +R+ E Sbjct: 311 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 367 Query: 226 KALMKLKLSARLDYLRRYV 170 KA+ KL+ R LR ++ Sbjct: 368 KAIKKLRHPRRSKPLRDFM 386 [142][TOP] >UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1 RepID=C0QRZ3_PERMH Length = 577 Score = 76.3 bits (186), Expect = 2e-12 Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 1/135 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398 R PT EEI ++V + PE+ R + + SQ +SL + +E + ++D + + Sbjct: 440 REPTPEEIAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESHLGDFIEDKTVMSPEQHV 499 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LR L++VL +L +E V+R RFGL+ + TL ++ ++RE +R+ E KAL Sbjct: 500 LRQALRQQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKAL 559 Query: 217 MKLKLSARLDYLRRY 173 KL+ R YLR + Sbjct: 560 RKLRHPHRAKYLRPF 574 [143][TOP] >UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXH1_HALOH Length = 358 Score = 76.3 bits (186), Expect = 2e-12 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R PT EEI E + + E+ R++ K +Q +SL + E+ + ++D + Sbjct: 222 REPTPEEIGEEMGMPAEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDEDAPAPASAA 281 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR LDDVLD+L +E V+ RFGL+ RTL E+ ++RE +R+ E KAL Sbjct: 282 SFTLLREQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKAL 341 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 342 RKLRHPSRSKKLKDYL 357 [144][TOP] >UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC Length = 368 Score = 76.3 bits (186), Expect = 2e-12 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + ++PE+ R++ K +Q +SL + ++ + + D D Sbjct: 232 REPTPEEIAAEMDLTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPD-----DEAPA 286 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ Sbjct: 287 PADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQI 346 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ ++ Sbjct: 347 EAKALRKLRHPSRSKRLKDFL 367 [145][TOP] >UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AZ88_RUMGN Length = 371 Score = 76.3 bits (186), Expect = 2e-12 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + + + ER R++ K SQ +SL + E+ + + D DN Sbjct: 235 REPLPEEIAKELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 289 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+ Sbjct: 290 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 349 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 350 EAKALRKLRHPSRSRKLRDYL 370 [146][TOP] >UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZYP8_9FIRM Length = 330 Score = 76.3 bits (186), Expect = 2e-12 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI E + + +R R++ K SQ +SL + E+ + + D DN Sbjct: 194 REPTPEEIAEEMKMPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 248 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 249 PADAAAFTLLKEQLIEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 308 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 309 EAKALRKLRHPSRSRKLKDYL 329 [147][TOP] >UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KQA4_9FIRM Length = 383 Score = 76.3 bits (186), Expect = 2e-12 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + + + ER R++ K SQ +SL + E+ + + D DN Sbjct: 247 REPLPEEIAKELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 301 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+ Sbjct: 302 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 361 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 362 EAKALRKLRHPSRSRKLRDYL 382 [148][TOP] >UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905 RepID=A3IBK5_9BACI Length = 375 Score = 76.3 bits (186), Expect = 2e-12 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 298 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DV+D+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVIDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [149][TOP] >UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B4EB Length = 418 Score = 75.9 bits (185), Expect = 2e-12 Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNR 401 R PT EEI E++ ++P + R++ K S +SL + ++ + ++D G + D+ Sbjct: 280 REPTAEEIAEKMDGMTPAKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGAMSPDDY 339 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 LL+ L++VL L +E V+R RFGLD RTL E+ N++RE +R+ E KA Sbjct: 340 ASNELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKA 399 Query: 220 LMKLKLSARLDYLRRYV 170 L KLK +R L+ ++ Sbjct: 400 LRKLKHPSRSKRLKDFL 416 [150][TOP] >UniRef100_Q1QBP8 RNA polymerase sigma factor n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QBP8_PSYCK Length = 648 Score = 75.9 bits (185), Expect = 2e-12 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R PT EE+ ER+ + + R V K ++ +S+ + E+ + ++DG + + Sbjct: 510 REPTPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDA 569 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LR A DVL +L +E V++ RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 570 TAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKAL 629 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R ++LR ++ Sbjct: 630 RKLRHPSRSEHLRSFL 645 [151][TOP] >UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DNN2_STACT Length = 369 Score = 75.9 bits (185), Expect = 2e-12 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + + Sbjct: 233 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHA 292 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 293 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 352 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 353 RKLRHPSRSKRLKDFM 368 [152][TOP] >UniRef100_B3DW95 RNA polymerase sigma factor n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DW95_METI4 Length = 623 Score = 75.9 bits (185), Expect = 2e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + +S +R R + K +Q +SL ++ +E+ ++D + + Sbjct: 482 REPTPEEIADETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMT 541 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +LLR + DVL +L +E VI QRFGL RTL E+ ++RE +R+ E KAL Sbjct: 542 GYSLLREKIKDVLGTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKAL 601 Query: 217 MKLKLSARLDYLRRYV 170 K++ RL +L+ ++ Sbjct: 602 RKMRHPTRLRHLKGFL 617 [153][TOP] >UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307 RepID=A5GSD3_SYNR3 Length = 401 Score = 75.9 bits (185), Expect = 2e-12 Identities = 47/135 (34%), Positives = 76/135 (56%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI E + ++ E+ R + K++Q +SL + E+ + ++ + D Sbjct: 266 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIENPDQDVA 325 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL +L P+E V+R R+GLD +TL EI +++RE +R+ E KAL+ Sbjct: 326 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALL 385 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 386 KLRHPNRNGVLKEYI 400 [154][TOP] >UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3K2_9FIRM Length = 359 Score = 75.9 bits (185), Expect = 2e-12 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + ++I+ ++ R++ K +Q +SL + E+ + ++D + R Sbjct: 223 REPMPEEIAKEMNITEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIED-----HDARA 277 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LLR LDDVL +L +E V+R RFGLD RTL E+ ++RE +R+ Sbjct: 278 PAEEASFTLLREQLDDVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 337 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E K L KL+ +R L+ Y+ Sbjct: 338 EAKTLRKLRHPSRSKKLKDYL 358 [155][TOP] >UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IFS3_9CLOT Length = 359 Score = 75.9 bits (185), Expect = 2e-12 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P +EI + + +S ++ R++ K SQ +SL + E+ + + D D+ Sbjct: 223 REPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 277 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L DVLD+L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 278 PAEAAAFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 337 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 338 EAKALRKLRHPSRSKKLKDYL 358 [156][TOP] >UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V565_9FIRM Length = 382 Score = 75.9 bits (185), Expect = 2e-12 Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 1/133 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGL-DGDNRR 398 R PT EEI R+ +S R R++ K SQ +SL + E+ ++ ++D D + Sbjct: 245 RDPTPEEIAHRMGLSVARVREIMKISQEPVSLETPIGEEEDTRLSDFIEDEAAPDPADAA 304 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ + +VL +L P+E V+R RFGL RTL E+ N ++RE +R+ E KAL Sbjct: 305 SMLLLKEQISEVLTTLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKAL 364 Query: 217 MKLKLSARLDYLR 179 KL+ RL L+ Sbjct: 365 RKLRHPVRLRKLQ 377 [157][TOP] >UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G971_9FIRM Length = 614 Score = 75.9 bits (185), Expect = 2e-12 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI + +P+R R++ K SQ +SL + E+ + + D +N Sbjct: 478 REPSPEEIAREMETTPDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----ENAPV 532 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L++VLD+L +E V+ RFGL+ RTL E+ N++RE +R+ Sbjct: 533 PAEAATFTLLKEQLNEVLDTLTERERKVLILRFGLEDGRGRTLEEVGKEFNVTRERIRQI 592 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 593 EAKALRKLRHPSRSRKLKDYL 613 [158][TOP] >UniRef100_C2D7B9 RNA polymerase sigma factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7B9_9ACTN Length = 441 Score = 75.9 bits (185), Expect = 2e-12 Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI E++ +S +R R++ K SQ +SL + E+ + ++D + + Sbjct: 304 REPTPEEIGEQMKMSADRVREIQKISQEPVSLETPIGEEEDSSLGDFIEDSTAVAPPDAA 363 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++LR L+ VLD L +E VI+ RFGL+ RTL E+ ++RE +R+ E K L Sbjct: 364 SDSMLREQLNQVLDGLADRERKVIKFRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTL 423 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 424 AKLRHPSRSGRLKDYI 439 [159][TOP] >UniRef100_B9CNX8 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CNX8_9ACTN Length = 455 Score = 75.9 bits (185), Expect = 2e-12 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI + +SP+R R++ K SQ +SL + E+ + ++D + + Sbjct: 318 RDPTPEEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAA 377 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++LR L+ VLD L +E VI+ RFGL+ RTL E+ ++RE +R+ E K L Sbjct: 378 SDSMLREQLEQVLDGLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTL 437 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 438 AKLRHPSRSSRLKDYM 453 [160][TOP] >UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CM66_9FIRM Length = 372 Score = 75.9 bits (185), Expect = 2e-12 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + + + ER R++ K SQ +SL + E+ + + D DN Sbjct: 236 REPLPEEIAKEMDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 290 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+ Sbjct: 291 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQI 350 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 351 EAKALRKLRHPSRSRKLRDYL 371 [161][TOP] >UniRef100_A6D7V7 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1 RepID=A6D7V7_9VIBR Length = 616 Score = 75.9 bits (185), Expect = 2e-12 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ + Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPVDSA 538 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LR+A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 539 TMTSLRVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 599 RKLRHPSRSETLRSFL 614 [162][TOP] >UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA Length = 525 Score = 75.9 bits (185), Expect = 2e-12 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 7/143 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSL------HSRHITTEEEFINGVVDDGGLD 413 RPPT EEI + +S E+ + KA+Q +SL ++ T E+ I D + Sbjct: 378 RPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLI-----DANAE 432 Query: 412 GDNRRQ-PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRK 236 G + +LL+ L++VL++L P+E V+R R+GLD +TL EI + +++RE +R+ Sbjct: 433 GPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQ 492 Query: 235 HEVKALMKLKLSARLDYLRRYVV 167 E KAL KLK +R L+ Y V Sbjct: 493 IEAKALRKLKQPSRNQVLQEYFV 515 [163][TOP] >UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str. A1055 RepID=UPI0001B41595 Length = 373 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [164][TOP] >UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R970_THETN Length = 372 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EE+ + + + E+ R++ K +Q +SL + E+ + + D Sbjct: 236 REPTPEELAKEMGMPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 295 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 296 AYTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 355 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 356 RKLRHPSRSKKLKDFL 371 [165][TOP] >UniRef100_Q4FS98 RNA polymerase sigma factor n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FS98_PSYA2 Length = 647 Score = 75.5 bits (184), Expect = 3e-12 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R PT EE+ ER+ + + R V K ++ +S+ + E+ + ++DG + + Sbjct: 509 REPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDA 568 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LR A DVL +L +E V++ RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 569 TAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKAL 628 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R ++LR ++ Sbjct: 629 RKLRHPSRSEHLRSFL 644 [166][TOP] >UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group RepID=C3LKX1_BACAC Length = 373 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [167][TOP] >UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MQ36_ANATD Length = 417 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398 R PT EEI + +++ E+ R++ K +Q +SL + E+ + + DD L Sbjct: 281 REPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAA 340 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++L+ L +VLDSL +E V++ RFGL+ RTL E+ N++RE +R+ E KAL Sbjct: 341 AYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 400 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 401 RKLRHPSRSKKLKDFL 416 [168][TOP] >UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1 RepID=B9IY60_BACCQ Length = 375 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [169][TOP] >UniRef100_A7MWQ8 RNA polymerase sigma factor n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MWQ8_VIBHB Length = 620 Score = 75.5 bits (184), Expect = 3e-12 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 603 RKLRHPSRSETLRSFL 618 [170][TOP] >UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XHW4_CALS8 Length = 411 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398 R PT EEI + +++ E+ R++ K +Q +SL + E+ + + DD L Sbjct: 275 REPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAA 334 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++L+ L +VLDSL +E V++ RFGL+ RTL E+ N++RE +R+ E KAL Sbjct: 335 AYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 394 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 395 RKLRHPSRSKKLKDFL 410 [171][TOP] >UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MZ09_9FUSO Length = 392 Score = 75.5 bits (184), Expect = 3e-12 Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 + PT EE+ E++ + E+ + + + +Q +SL + + E+ + V+D + Sbjct: 256 KEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDAT 315 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ LD+VL +L +E +V+R R+GLD +TL E+ N++RE +R+ EVKAL Sbjct: 316 TRVLLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKAL 375 Query: 217 MKLKLSARLDYLRRY 173 KL+ +R L Y Sbjct: 376 RKLRHPSRRKKLEDY 390 [172][TOP] >UniRef100_C8KWQ0 RNA polymerase sigma factor RpoD n=1 Tax=Actinobacillus minor 202 RepID=C8KWQ0_9PAST Length = 621 Score = 75.5 bits (184), Expect = 3e-12 Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R T EE+ ER+++ ++ R V K ++ +S+ + ++ + + D L+ Sbjct: 484 REATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 543 Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LR+A ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 544 TAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 604 RKLRHPSRSETLRSFL 619 [173][TOP] >UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q7U2_9THEO Length = 357 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EE+ + + + E+ R++ K +Q +SL + E+ + + D Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 341 RKLRHPSRSKKLKDFL 356 [174][TOP] >UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9 RepID=C6PMA8_9THEO Length = 357 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EE+ + + + E+ R++ K +Q +SL + E+ + + D Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 341 RKLRHPSRSKKLKDFL 356 [175][TOP] >UniRef100_C5S146 RNA polymerase sigma factor n=1 Tax=Actinobacillus minor NM305 RepID=C5S146_9PAST Length = 621 Score = 75.5 bits (184), Expect = 3e-12 Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R T EE+ ER+++ ++ R V K ++ +S+ + ++ + + D L+ Sbjct: 484 REATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 543 Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LR+A ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 544 TAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 604 RKLRHPSRSETLRSFL 619 [176][TOP] >UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter RepID=B0K6Y0_THEPX Length = 357 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EE+ + + + E+ R++ K +Q +SL + E+ + + D Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 341 RKLRHPSRSKKLKDFL 356 [177][TOP] >UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY Length = 373 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [178][TOP] >UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271 RepID=C2YWN0_BACCE Length = 375 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [179][TOP] >UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44 RepID=C2WC75_BACCE Length = 373 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [180][TOP] >UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus RepID=C2U2P5_BACCE Length = 375 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [181][TOP] >UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group RepID=B7HCR6_BACC4 Length = 375 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [182][TOP] >UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group RepID=A9VHS1_BACWK Length = 375 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [183][TOP] >UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3 RepID=C2PK08_BACCE Length = 375 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [184][TOP] >UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group RepID=B7HPJ2_BACC7 Length = 375 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [185][TOP] >UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1 RepID=C0FBN4_9CLOT Length = 372 Score = 75.5 bits (184), Expect = 3e-12 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EE+ E++ + ER R++ K SQ +SL + E+ + + D + + Sbjct: 236 REPSAEELAEKLDMPVERVREIMKISQDPVSLETPIGEEEDSHLGDFIQDDHVQVPVDAA 295 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL L +VLD+L +E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 296 TYTLLHEQLMEVLDTLTDREQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKAL 355 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 356 RKLRHPSRSRKLKDYL 371 [186][TOP] >UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQM8_9BACE Length = 448 Score = 75.5 bits (184), Expect = 3e-12 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EEI + + I ER R++ K SQ +SL + E+ + + D DN Sbjct: 312 REPTPEEIAKEMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 366 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA +L+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 367 PAEEAASTILKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQI 426 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR ++ Sbjct: 427 EAKALRKLRHPSRSRKLRDFL 447 [187][TOP] >UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group RepID=B7IYE3_BACC2 Length = 375 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [188][TOP] >UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group RepID=A0RIR5_BACAH Length = 373 Score = 75.5 bits (184), Expect = 3e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 357 RKLRHPSRSKRLKDFL 372 [189][TOP] >UniRef100_A8T8H9 RNA polymerase sigma factor n=1 Tax=Vibrio sp. AND4 RepID=A8T8H9_9VIBR Length = 620 Score = 75.5 bits (184), Expect = 3e-12 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 603 RKLRHPSRSETLRSFL 618 [190][TOP] >UniRef100_A6B6J7 RNA polymerase sigma factor n=2 Tax=Vibrio parahaemolyticus RepID=A6B6J7_VIBPA Length = 620 Score = 75.5 bits (184), Expect = 3e-12 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 603 RKLRHPSRSETLRSFL 618 [191][TOP] >UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764 Length = 316 Score = 75.1 bits (183), Expect = 4e-12 Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398 R PT EEI + + ISPE+ R++ K SQ +SL + + + ++D L + Sbjct: 180 REPTPEEIGKEMDISPEKVREIQKVSQEPVSLETPVGEESDSNLGDFIEDQDALAPADAA 239 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L++VLD+L +E V+R RFGL+ RTL E+ ++RE +R+ E KAL Sbjct: 240 AFELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKAL 299 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 300 RKLRHPSRSKRLKDFL 315 [192][TOP] >UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L6R1_STAHJ Length = 368 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 352 RKLRHPSRSKRLKDFM 367 [193][TOP] >UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1 Length = 368 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 352 RKLRHPSRSKRLKDFM 367 [194][TOP] >UniRef100_Q13R65 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13R65_BURXL Length = 665 Score = 75.1 bits (183), Expect = 4e-12 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Frame = -2 Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377 + ER+ +S E+ R + K ++ +S+ + + + +++D + A LR Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRA 594 Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197 A+DD LDSL P+E V+R R+G++ K D TL E+ +++RE +R+ E KA+ KL + Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654 Query: 196 RLDYLRRYV 170 R D L+ ++ Sbjct: 655 RADRLKSFL 663 [195][TOP] >UniRef100_C5CDI4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CDI4_KOSOT Length = 405 Score = 75.1 bits (183), Expect = 4e-12 Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ-P 392 PT EE+ + +PE+ ++ AS+ +SL S EE + V D ++ Sbjct: 263 PTVEELGKLTGKTPEKIEEILAASKETVSLESPISGDEESTMGDFVHDESIEKPEEAAIK 322 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR +D+VLD+L P+E +V++ R+G LDGK +TL E+ N++RE +R+ EVKAL Sbjct: 323 MLLREQIDEVLDTLSPREAMVLKMRYGLLDGK-TKTLEEVGQFFNVTRERIRQIEVKALR 381 Query: 214 KLKLSARLDYLR 179 KL+ +R L+ Sbjct: 382 KLRHPSRSKQLK 393 [196][TOP] >UniRef100_B3H2B0 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae serovar 7 str. AP76 RepID=B3H2B0_ACTP7 Length = 619 Score = 75.1 bits (183), Expect = 4e-12 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R T EE+ ER+ + ++ R V K ++ +S+ + ++ + + D L+ Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541 Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LRLA ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 602 RKLRHPSRSETLRSFL 617 [197][TOP] >UniRef100_B2TBE5 RNA polymerase sigma factor n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TBE5_BURPP Length = 665 Score = 75.1 bits (183), Expect = 4e-12 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Frame = -2 Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377 + ER+ +S E+ R + K ++ +S+ + + + +++D + A LR Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRA 594 Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197 A+DD LDSL P+E V+R R+G++ K D TL E+ +++RE +R+ E KA+ KL + Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654 Query: 196 RLDYLRRYV 170 R D L+ ++ Sbjct: 655 RADRLKSFL 663 [198][TOP] >UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1U1_DESAP Length = 360 Score = 75.1 bits (183), Expect = 4e-12 Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + IS ++ R++ K +Q +SL + E+ + ++D Sbjct: 224 REPLPEEIAREMDISEDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAQAPAEEA 283 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR LDDVL +L +E V+R RFGLD RTL E+ ++RE +R+ E K L Sbjct: 284 SFTLLREQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTL 343 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 344 RKLRHPSRSKKLKDYL 359 [199][TOP] >UniRef100_B0BR67 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae serovar 3 str. JL03 RepID=B0BR67_ACTPJ Length = 619 Score = 75.1 bits (183), Expect = 4e-12 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R T EE+ ER+ + ++ R V K ++ +S+ + ++ + + D L+ Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541 Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LRLA ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 602 RKLRHPSRSETLRSFL 617 [200][TOP] >UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MG96_ALKOO Length = 372 Score = 75.1 bits (183), Expect = 4e-12 Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + +S E+ R++ K +Q +SL + E+ + + D Sbjct: 236 RDPKPEEIAAEMDLSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 295 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +LL+ L +VLD+L P+E V+R RFGLD RTL E+ +++RE +R+ E KAL Sbjct: 296 AFSLLKEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKAL 355 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ Y+ Sbjct: 356 RKLRHPSRSKKLKDYL 371 [201][TOP] >UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSG9_ALKMQ Length = 372 Score = 75.1 bits (183), Expect = 4e-12 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + + + E+ R++ K +Q +SL + E+ + + D D+ Sbjct: 236 REPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 290 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VLD+L P+E V+R RFGLD RTL E+ +++RE +R+ Sbjct: 291 PAEAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQI 350 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 351 EAKALRKLRHPSRSKKLKDYL 371 [202][TOP] >UniRef100_A3N2C3 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae L20 RepID=A3N2C3_ACTP2 Length = 619 Score = 75.1 bits (183), Expect = 4e-12 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R T EE+ ER+ + ++ R V K ++ +S+ + ++ + + D L+ Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541 Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LRLA ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 602 RKLRHPSRSETLRSFL 617 [203][TOP] >UniRef100_A1VMP0 RNA polymerase sigma factor n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VMP0_POLNA Length = 736 Score = 75.1 bits (183), Expect = 4e-12 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392 P + E++ I E+ R + K ++ +S+ + ++ + ++DG Sbjct: 600 PDASILAEKMEIPEEKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGANTAPLEAAMQ 659 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 A LR + D+LDSL P+E V+R RFG++ D TL E+ +++RE +R+ E KAL K Sbjct: 660 AGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRK 719 Query: 211 LKLSARLDYLRRYV 170 LK +R D LR ++ Sbjct: 720 LKHPSRSDKLRSFI 733 [204][TOP] >UniRef100_C9QCH3 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QCH3_VIBOR Length = 618 Score = 75.1 bits (183), Expect = 4e-12 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ + Sbjct: 481 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 540 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 541 TAGSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 600 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 601 RKLRHPSRSETLRSFL 616 [205][TOP] >UniRef100_C9NN36 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NN36_9VIBR Length = 617 Score = 75.1 bits (183), Expect = 4e-12 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ + Sbjct: 480 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 539 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 540 TSTSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 599 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 600 RKLRHPSRSETLRSFL 615 [206][TOP] >UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD Length = 392 Score = 75.1 bits (183), Expect = 4e-12 Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 1/135 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 + PT EE+ E++ + E+ + + + +Q +SL + + E+ + V+D + Sbjct: 256 KEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDAT 315 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ LD+VL +L +E +V+R R+GLD +TL E+ N++RE +R+ EVKAL Sbjct: 316 TRILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKAL 375 Query: 217 MKLKLSARLDYLRRY 173 KL+ +R L Y Sbjct: 376 RKLRHPSRRKKLEDY 390 [207][TOP] >UniRef100_C7MNW8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNW8_CRYCD Length = 422 Score = 75.1 bits (183), Expect = 4e-12 Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING--VVDDGGLDGDNR 401 R PT EEI E + ++P+R R++ K SQ +SL + I EE+ G + DD + + Sbjct: 285 REPTPEEIAEEMDLTPDRVREIQKISQEPVSLETP-IGEEEDSQLGDFIEDDAAVVPPDA 343 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 ++L+ L VLD L +E VI RFGL+ RTL E+ ++RE +R+ E K Sbjct: 344 ASFSMLQEQLTKVLDGLAERERKVISLRFGLEDGHPRTLEEVGREFGVTRERIRQIESKT 403 Query: 220 LMKLKLSARLDYLRRYV 170 L KL+ +R L+ Y+ Sbjct: 404 LAKLRHPSRSSKLKDYL 420 [208][TOP] >UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LFQ8_9FIRM Length = 374 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 1/137 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398 R PT EE+ ER+++ R R+V K S+ +SL + ++ + + DD L + Sbjct: 238 REPTPEEVAERLNVPVSRVREVLKISRDPVSLDTPIGEEDDSHLGDFIEDDSALSPSDSA 297 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++LR L L+SL +E V++ RFGL RTL E+ N++RE +R+ E KAL Sbjct: 298 AFSMLREELGTALESLTDRERQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQIEAKAL 357 Query: 217 MKLKLSARLDYLRRYVV 167 KL+ +R L+ +++ Sbjct: 358 RKLRHPSRSKRLKDFLI 374 [209][TOP] >UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis W23144 RepID=C5QXG6_STAEP Length = 368 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 352 RKLRHPSRSKRLKDFM 367 [210][TOP] >UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis M23864:W1 RepID=C5QSV2_STAEP Length = 368 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 352 RKLRHPSRSKRLKDFM 367 [211][TOP] >UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603 RepID=C4WCC7_STAWA Length = 367 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 231 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 290 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 291 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 350 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 351 RKLRHPSRSKRLKDFM 366 [212][TOP] >UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119 RepID=C2M0X4_STAHO Length = 368 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 352 RKLRHPSRSKRLKDFM 367 [213][TOP] >UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14 RepID=B9CVA9_STACP Length = 368 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 352 RKLRHPSRSKRLKDFM 367 [214][TOP] >UniRef100_B8KEK7 RNA polymerase sigma factor n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8KEK7_VIBPA Length = 620 Score = 75.1 bits (183), Expect = 4e-12 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ + Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 543 TAGSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 603 RKLRHPSRSETLRSFL 618 [215][TOP] >UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FR93_9CLOT Length = 370 Score = 75.1 bits (183), Expect = 4e-12 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + ER R++ K SQ +SL + E+ + + D DN Sbjct: 234 REPLPEEIAEELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VLD+L +E V+R RFG++ RTL E+ +++RE +R+ Sbjct: 289 PAEAAAATLLKEQLGEVLDTLTDREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 348 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 349 EAKALRKLRHPSRSRKLRDYL 369 [216][TOP] >UniRef100_A7VCB7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. L2-50 RepID=A7VCB7_9CLOT Length = 377 Score = 75.1 bits (183), Expect = 4e-12 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + + I ER R++ K SQ +SL + E+ + + D DN Sbjct: 241 REPQPEEIADVMDIPVERVREILKISQEPVSLETPIGEEEDSHLGDFIPD-----DNMPV 295 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VLD+L +E V+ RFGL+ RTL E+ N++RE +R+ Sbjct: 296 PADAAAFTLLKEQLVEVLDTLTEREKKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQI 355 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R LR Y+ Sbjct: 356 EAKALRKLRHPSRSRKLRDYI 376 [217][TOP] >UniRef100_A7K4C7 RNA polymerase sigma factor n=3 Tax=Vibrio RepID=A7K4C7_9VIBR Length = 639 Score = 75.1 bits (183), Expect = 4e-12 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 502 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 561 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 562 TATSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 621 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 622 RKLRHPSRSETLRSFL 637 [218][TOP] >UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp. RepID=RPSD2_BACSP Length = 377 Score = 75.1 bits (183), Expect = 4e-12 Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI + +S E+ R++ K +Q +SL + ++ + ++D L + Sbjct: 241 REPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAA 300 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 361 RKLRHPSRSKRLKDFL 376 [219][TOP] >UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis RepID=RPOD_STAEQ Length = 368 Score = 75.1 bits (183), Expect = 4e-12 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 352 RKLRHPSRSKRLKDFM 367 [220][TOP] >UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693157 Length = 375 Score = 74.7 bits (182), Expect = 5e-12 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398 R PT EEI + + +S ++ R++ K +Q +SL + ++ + ++D L + Sbjct: 239 REPTPEEIAKEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAA 298 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 299 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 359 RKLRHPSRSKRLKDFL 374 [221][TOP] >UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ Length = 370 Score = 74.7 bits (182), Expect = 5e-12 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R PT EEI + + IS ++ R++ K +Q +SL + E+ + V+D Sbjct: 234 REPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEA 293 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR LD+VL +L +E V+R RFGLD RTL E+ ++RE +R+ E KAL Sbjct: 294 SYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKAL 353 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 354 RKLRHPSRSKKLKDFL 369 [222][TOP] >UniRef100_Q0VMT7 RNA polymerase sigma factor n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VMT7_ALCBS Length = 633 Score = 74.7 bits (182), Expect = 5e-12 Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EE+ R+ + ++ R V K ++ +S+ + E+ + ++DG ++ Sbjct: 494 REPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNMESPVDSA 553 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +L L A DVL +L +E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 554 TSLGLEEATRDVLANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 613 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R ++LR ++ Sbjct: 614 RKLRHPSRSEHLRSFL 629 [223][TOP] >UniRef100_C4K493 RNA polymerase sigma factor n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K493_HAMD5 Length = 610 Score = 74.7 bits (182), Expect = 5e-12 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R P EE+ ER+ + E+ R V K ++ +S+ + ++ + ++D L+ + Sbjct: 473 REPAPEELAERMLMPEEKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSA 532 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LRLA +DVL L +E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 533 TSESLRLATNDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 592 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R D L+ ++ Sbjct: 593 RKLRHPSRSDVLKSFL 608 [224][TOP] >UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KI23_CLOPH Length = 372 Score = 74.7 bits (182), Expect = 5e-12 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ + ++I ER R++ K SQ +SL + E+ + + D DN Sbjct: 236 REPFPEEVAKEMNIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 290 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+ Sbjct: 291 PAEAAAFTLLKEQLMEVLGTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 350 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E KAL KL+ +R L+ Y+ Sbjct: 351 EAKALRKLRHPSRSRKLKDYL 371 [225][TOP] >UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3U6_PELTS Length = 363 Score = 74.7 bits (182), Expect = 5e-12 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 6/141 (4%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P+ EEI + ++I+ ++ R++ K +Q +SL + E+ + ++D R Sbjct: 227 RDPSPEEIAKEMNITEDKVREILKIAQEPVSLETPIGEEEDSHLGDFIED-----HEARA 281 Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233 PA LLR LD+VL +L +E V+R RFGLD RTL E+ ++RE +R+ Sbjct: 282 PAEEASFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 341 Query: 232 EVKALMKLKLSARLDYLRRYV 170 E K L KL+ +R L+ Y+ Sbjct: 342 EAKTLRKLRHPSRSKKLKDYL 362 [226][TOP] >UniRef100_Q1K285 RNA polymerase sigma factor n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K285_DESAC Length = 583 Score = 74.7 bits (182), Expect = 5e-12 Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 4/139 (2%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI ER+ + E+ R V K ++ +SL + E+ + ++D G Sbjct: 445 REPIPEEIAERMDLPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKGAVSPLE-- 502 Query: 394 PALLRLALDD----VLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227 A+++ L D VL +L P+E V+R RFG+ + D TL E+ + N++RE +R+ E Sbjct: 503 -AVIKGNLSDQTAEVLSTLSPREEKVLRMRFGIGERSDHTLEEVGQDFNVTRERIRQIEA 561 Query: 226 KALMKLKLSARLDYLRRYV 170 KAL KL+ +R LR +V Sbjct: 562 KALRKLRHPSRAKRLRSFV 580 [227][TOP] >UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS Length = 357 Score = 74.7 bits (182), Expect = 5e-12 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EEI + + +S ++ R++ K +Q +SL + E+ + + D Sbjct: 221 RDPLPEEIAKEMDMSVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL Sbjct: 281 AFTMLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R L+ ++ Sbjct: 341 RKLRHPSRSKKLKDFL 356 [228][TOP] >UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GBZ7_9FIRM Length = 372 Score = 74.7 bits (182), Expect = 5e-12 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P +EI ++IS ER R++ K +Q +SL + ++ + ++D + Sbjct: 236 REPAPDEIAHVMNISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAA 295 Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ LDDVL++L P+E V+ RFGL+ RTL E+ ++RE +R+ E KAL Sbjct: 296 AFELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKAL 355 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 356 RKLRHPMRSKRLKDYL 371 [229][TOP] >UniRef100_B8KQ57 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KQ57_9GAMM Length = 607 Score = 74.7 bits (182), Expect = 5e-12 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG--DNR 401 R PT EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D ++ D Sbjct: 468 REPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQTINSPIDAA 527 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 L+ A DVL L +E V+R RFG+D D TL E+ +++RE +R+ E KA Sbjct: 528 TGQGLME-ATKDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 586 Query: 220 LMKLKLSARLDYLRRYV 170 L KL+ R DYLR ++ Sbjct: 587 LRKLRHPTRSDYLRSFL 603 [230][TOP] >UniRef100_B7RVL8 RNA polymerase sigma factor n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RVL8_9GAMM Length = 605 Score = 74.7 bits (182), Expect = 5e-12 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398 R PT EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D + + Sbjct: 468 REPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTISSPVDSA 527 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 L+ A DVL L +E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 528 TGQGLQEATKDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 587 Query: 217 MKLKLSARLDYLRRYV 170 KL+ R DYLR ++ Sbjct: 588 RKLRHPTRSDYLRSFL 603 [231][TOP] >UniRef100_B4WX76 RNA polymerase sigma factor n=1 Tax=Alcanivorax sp. DG881 RepID=B4WX76_9GAMM Length = 633 Score = 74.7 bits (182), Expect = 5e-12 Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PT EE+ R+ + ++ R V K ++ +S+ + E+ + ++DG ++ Sbjct: 494 REPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNMESPVDSA 553 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 +L L A DVL +L +E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 554 TSLGLEEATRDVLANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 613 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R ++LR ++ Sbjct: 614 RKLRHPSRSEHLRSFL 629 [232][TOP] >UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium caldarium RepID=Q39515_CYACA Length = 591 Score = 74.7 bits (182), Expect = 5e-12 Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING---VVDDGGLDGDN 404 RPP+EEEI E V I +YR V + S+ I+SL + + ++ G + + + + Sbjct: 453 RPPSEEEICESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENC 512 Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224 R LR +++ VL L +E VIR RFGL RTL E+ S N++RE +R+ E K Sbjct: 513 SRDT--LRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESK 570 Query: 223 ALMKLKLSARLDYLRRYV 170 AL KL+ A ++L Y+ Sbjct: 571 ALKKLRTPAENNFLDEYL 588 [233][TOP] >UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MUC7_9CHLO Length = 587 Score = 74.7 bits (182), Expect = 5e-12 Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING-VVDDGGLDGDNRR 398 R PT EEI E + ++ E+ + KAS +SL + + +VDD D+ Sbjct: 434 RDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDAT 493 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LL+ L++VL++L P+E V+R R+G+D +TL EI + +++RE +R+ E KAL Sbjct: 494 GKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKAL 553 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R LR Y+ Sbjct: 554 RKLRQPSRNGILREYL 569 [234][TOP] >UniRef100_Q82XM8 RNA polymerase sigma factor n=1 Tax=Nitrosomonas europaea RepID=Q82XM8_NITEU Length = 751 Score = 74.3 bits (181), Expect = 6e-12 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 1/134 (0%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRRQP 392 P + E++ + E+ R + K S+ +S+ + E+ + ++D ++ + Sbjct: 613 PEPAVLAEKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDASTMEPADAAVY 672 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212 A LR DVLDSL P+E V+R RFG++ D TL E+ +++RE +R+ E KAL K Sbjct: 673 AGLRTVTKDVLDSLTPREAKVLRMRFGIEMNTDHTLEEVGRQFDVTRERIRQIEAKALRK 732 Query: 211 LKLSARLDYLRRYV 170 L+ AR D LR ++ Sbjct: 733 LRHPARSDRLRSFL 746 [235][TOP] >UniRef100_Q7VN82 RNA polymerase sigma factor n=1 Tax=Haemophilus ducreyi RepID=Q7VN82_HAEDU Length = 613 Score = 74.3 bits (181), Expect = 6e-12 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R T EE+ ER+ + ++ R V K ++ +S+ + I ++ + + D L+ Sbjct: 477 REATPEELAERMGMPEDKIRKVLKIAKEPISMETP-IGDDDSHLGDFIQDENLELPLDSA 535 Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A LRLA ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 536 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 596 RKLRHPSRSETLRSFL 611 [236][TOP] >UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9313 RepID=Q7V698_PROMM Length = 461 Score = 74.3 bits (181), Expect = 6e-12 Identities = 46/135 (34%), Positives = 74/135 (54%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI E + ++ E+ R + K++Q +SL + E+ + ++ + + Sbjct: 326 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTENPEQDVA 385 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL +L P+E V+R R+GLD +TL EI ++RE +R+ E KAL Sbjct: 386 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 445 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 446 KLRHPNRNGVLKEYI 460 [237][TOP] >UniRef100_Q7MP03 RNA polymerase sigma factor n=2 Tax=Vibrio vulnificus RepID=Q7MP03_VIBVY Length = 643 Score = 74.3 bits (181), Expect = 6e-12 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 506 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 565 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 566 TATSLKAATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 625 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 626 RKLRHPSRSETLRSFL 641 [238][TOP] >UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D5_THENN Length = 392 Score = 74.3 bits (181), Expect = 6e-12 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392 P+ EE+ + + PE+ +++ +A++ +SL S E+ I V D + + Sbjct: 251 PSVEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADESVPSPKKEAMR 310 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 L+R L+ VL +L P+E +V+R R+G LDGK +TL E+ N++RE +R+ EVKAL Sbjct: 311 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 369 Query: 214 KLKLSARLDYLR 179 KL+ +R YL+ Sbjct: 370 KLRHPSRSKYLK 381 [239][TOP] >UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1 Length = 407 Score = 74.3 bits (181), Expect = 6e-12 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392 P+ EE+ + + PE+ +++ +A++ +SL S E+ I V D + + Sbjct: 266 PSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMR 325 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 L+R L+ VL +L P+E +V+R R+G LDGK +TL E+ N++RE +R+ EVKAL Sbjct: 326 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 384 Query: 214 KLKLSARLDYLR 179 KL+ +R YL+ Sbjct: 385 KLRHPSRSKYLK 396 [240][TOP] >UniRef100_A5F9E3 RNA polymerase sigma factor n=1 Tax=Vibrio cholerae O395 RepID=A5F9E3_VIBC3 Length = 621 Score = 74.3 bits (181), Expect = 6e-12 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 484 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 543 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 544 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 604 RKLRHPSRSEVLRSFL 619 [241][TOP] >UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str. MIT 9303 RepID=A2C7M0_PROM3 Length = 444 Score = 74.3 bits (181), Expect = 6e-12 Identities = 46/135 (34%), Positives = 74/135 (54%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R PTEEEI E + ++ E+ R + K++Q +SL + E+ + ++ + + Sbjct: 309 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTENPEQDVA 368 Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 LLR L+ VL +L P+E V+R R+GLD +TL EI ++RE +R+ E KAL Sbjct: 369 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 428 Query: 214 KLKLSARLDYLRRYV 170 KL+ R L+ Y+ Sbjct: 429 KLRHPNRNGVLKEYI 443 [242][TOP] >UniRef100_C9Q2J8 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio sp. RC341 RepID=C9Q2J8_9VIBR Length = 628 Score = 74.3 bits (181), Expect = 6e-12 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 491 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 550 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 551 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 610 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 611 RKLRHPSRSEVLRSFL 626 [243][TOP] >UniRef100_C7IAE0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Thermotoga naphthophila RKU-10 RepID=C7IAE0_9THEM Length = 407 Score = 74.3 bits (181), Expect = 6e-12 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Frame = -2 Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392 P+ EE+ + + PE+ +++ +A++ +SL S E+ I V D + + Sbjct: 266 PSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMR 325 Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215 L+R L+ VL +L P+E +V+R R+G LDGK +TL E+ N++RE +R+ EVKAL Sbjct: 326 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 384 Query: 214 KLKLSARLDYLR 179 KL+ +R YL+ Sbjct: 385 KLRHPSRSKYLK 396 [244][TOP] >UniRef100_C7HUH1 RNA polymerase sigma factor RpoD n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HUH1_9FIRM Length = 614 Score = 74.3 bits (181), Expect = 6e-12 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398 R P+ EEI E++ I E+ +++ K +Q +SL + E+ + + DD ++ D+ Sbjct: 479 RDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAA 538 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++LR L+DVL L +E V++ RFGL RTL E+ +++RE +R+ E KAL Sbjct: 539 NYSMLRDQLNDVLSCLGAREKRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKAL 598 Query: 217 MKLKLSARLDYLRRYV 170 KLK + + L+ ++ Sbjct: 599 RKLKSPNKSELLKDFL 614 [245][TOP] >UniRef100_C2HU05 RNA polymerase sigma factor n=1 Tax=Vibrio cholerae bv. albensis VL426 RepID=C2HU05_VIBCH Length = 642 Score = 74.3 bits (181), Expect = 6e-12 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 505 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 564 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 565 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 624 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 625 RKLRHPSRSEVLRSFL 640 [246][TOP] >UniRef100_C3NW56 RNA polymerase sigma factor n=17 Tax=Vibrio cholerae RepID=C3NW56_VIBCJ Length = 642 Score = 74.3 bits (181), Expect = 6e-12 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395 R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ Sbjct: 505 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 564 Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL Sbjct: 565 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 624 Query: 217 MKLKLSARLDYLRRYV 170 KL+ +R + LR ++ Sbjct: 625 RKLRHPSRSEVLRSFL 640 [247][TOP] >UniRef100_B8KVX1 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KVX1_9GAMM Length = 603 Score = 74.3 bits (181), Expect = 6e-12 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG--DNR 401 R PT EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D + D+ Sbjct: 466 REPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDVTIASPVDSA 525 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 + L A DVL L +E V+R RFG+D D TL E+ +++RE +R+ E KA Sbjct: 526 TEEGLTE-ATTDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 584 Query: 220 LMKLKLSARLDYLRRYV 170 L KL+ R DYLR ++ Sbjct: 585 LRKLRHPTRSDYLRSFL 601 [248][TOP] >UniRef100_B6WAP8 RNA polymerase sigma factor n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WAP8_9FIRM Length = 617 Score = 74.3 bits (181), Expect = 6e-12 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398 R P+ EEI E++ I E+ +++ K +Q +SL + E+ + + DD ++ D+ Sbjct: 482 RDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAA 541 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 ++LR L+DVL L +E V++ RFGL RTL E+ +++RE +R+ E KAL Sbjct: 542 NYSMLRDQLNDVLSCLGAREKRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKAL 601 Query: 217 MKLKLSARLDYLRRYV 170 KLK + + L+ ++ Sbjct: 602 RKLKSPNKSELLKDFL 617 [249][TOP] >UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM Length = 417 Score = 74.3 bits (181), Expect = 6e-12 Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 2/137 (1%) Frame = -2 Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNR 401 R P+ EEI E++ ++PE+ R++ K S +SL + ++ + ++D G + D+ Sbjct: 279 REPSAEEIAEKMDGMTPEKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGAMSPDDY 338 Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221 LL+ L++VL L +E V+R RFGLD RTL E+ +++RE +R+ E KA Sbjct: 339 AANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKA 398 Query: 220 LMKLKLSARLDYLRRYV 170 L KLK +R L+ ++ Sbjct: 399 LRKLKHPSRSKRLKDFL 415 [250][TOP] >UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UQQ5_9AQUI Length = 571 Score = 74.3 bits (181), Expect = 6e-12 Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Frame = -2 Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR- 398 R PT EEI + + ++P++ R V +++Q +SL + E+ F+ ++D + Sbjct: 435 REPTPEEIAKHLGMTPDKVRKVLRSAQEPISLETPIGDDEDTFLKDFIEDKSVPNPEEYV 494 Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218 LLR L+ VL++L KE ++R R+GL + TL ++ N++RE +R+ E KA+ Sbjct: 495 SRKLLREQLERVLETLSDKEREILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAI 554 Query: 217 MKLKLSARLDYLRRY 173 KL+ +R YL+ + Sbjct: 555 RKLRHPSRAKYLKDF 569