BB917865 ( RCE23520 )

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[1][TOP]
>UniRef100_Q9ZNX9 AT5G24120 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZNX9_ARATH
          Length = 517

 Score =  213 bits (541), Expect = 1e-53
 Identities = 102/136 (75%), Positives = 123/136 (90%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           RPPTE+E++ER+ I+PERYR+V +A++P+LSL+S+H  T+EEFING+ D  G+  +N RQ
Sbjct: 382 RPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQ 441

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
           PALLRLALDDVLDSLKPKE+LVIRQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKALM
Sbjct: 442 PALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALM 501

Query: 214 KLKLSARLDYLRRYVV 167
           KLK  AR+DYLR+Y+V
Sbjct: 502 KLKHQARVDYLRQYIV 517

[2][TOP]
>UniRef100_B9RIL8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
           RepID=B9RIL8_RICCO
          Length = 501

 Score =  212 bits (540), Expect = 1e-53
 Identities = 110/137 (80%), Positives = 121/137 (88%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           QR PTEEEIIERV IS ERY +V +A++P LSLH+RH  T+EEFING+ D  G  GDNRR
Sbjct: 367 QRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQEEFINGITDIDG--GDNRR 424

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
           QPALLRLALDDVLDSLKPKE+LVIRQR+GLDGKGDRTLGEIA NLNISREMVRK+EVKAL
Sbjct: 425 QPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKAL 484

Query: 217 MKLKLSARLDYLRRYVV 167
           MKLK  AR+DYLRRYVV
Sbjct: 485 MKLKHPARVDYLRRYVV 501

[3][TOP]
>UniRef100_B9ND00 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9ND00_POPTR
          Length = 512

 Score =  211 bits (536), Expect = 4e-53
 Identities = 107/137 (78%), Positives = 121/137 (88%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R P E+EIIE+V ISPERY +VT+AS+P+LSLHSRH TT+EEFI G+ D  G  GD+RR
Sbjct: 378 KRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEEFIGGIADVDG--GDDRR 435

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
           Q ALLRLALDDVLDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKAL
Sbjct: 436 QSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKAL 495

Query: 217 MKLKLSARLDYLRRYVV 167
           MKLK   R+DYLRRYVV
Sbjct: 496 MKLKHPTRVDYLRRYVV 512

[4][TOP]
>UniRef100_A7QTV0 Chromosome undetermined scaffold_171, whole genome shotgun sequence
           n=1 Tax=Vitis vinifera RepID=A7QTV0_VITVI
          Length = 518

 Score =  206 bits (523), Expect = 1e-51
 Identities = 103/136 (75%), Positives = 120/136 (88%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           QR PTEEEIIE+V ISPERY +V +AS+ +LSLH+RH TT+EE+ING+ D  G+ GD  R
Sbjct: 382 QRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRGR 441

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
           Q ALLRLALDDVLDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NL+ISREMVRKHEVKAL
Sbjct: 442 QLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKAL 501

Query: 217 MKLKLSARLDYLRRYV 170
           MKLK  AR+DYLR+Y+
Sbjct: 502 MKLKHPARVDYLRQYI 517

[5][TOP]
>UniRef100_B9N985 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N985_POPTR
          Length = 512

 Score =  199 bits (507), Expect = 1e-49
 Identities = 105/136 (77%), Positives = 116/136 (85%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEIIE+V IS ERY +V +AS+P+LSLHSRH TT+EE I+GV D  G  GD+RRQ
Sbjct: 379 RKPTGEEIIEKVGISIERYHEVMRASKPVLSLHSRHKTTQEELISGVADVNG--GDDRRQ 436

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
            ALLRLALDDVLDSLKPKE+LV+RQRFGLDGKGDRTLGEIA NLNISREMVRKHE KALM
Sbjct: 437 SALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEAKALM 496

Query: 214 KLKLSARLDYLRRYVV 167
           KLK   R+DYL RYVV
Sbjct: 497 KLKHPTRVDYLCRYVV 512

[6][TOP]
>UniRef100_Q84JN3 Os05g0586600 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q84JN3_ORYSJ
          Length = 500

 Score =  172 bits (436), Expect = 2e-41
 Identities = 85/135 (62%), Positives = 107/135 (79%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEE++++V +SP RYRDV + ++P  SLH+R+  T+EE IN V DD  +  D    
Sbjct: 366 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 425

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM
Sbjct: 426 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 485

Query: 214 KLKLSARLDYLRRYV 170
           KLK   R++YLRRY+
Sbjct: 486 KLKHPTRVEYLRRYM 500

[7][TOP]
>UniRef100_B9FIR8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9FIR8_ORYSJ
          Length = 457

 Score =  172 bits (436), Expect = 2e-41
 Identities = 85/135 (62%), Positives = 107/135 (79%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEE++++V +SP RYRDV + ++P  SLH+R+  T+EE IN V DD  +  D    
Sbjct: 323 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 382

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM
Sbjct: 383 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 442

Query: 214 KLKLSARLDYLRRYV 170
           KLK   R++YLRRY+
Sbjct: 443 KLKHPTRVEYLRRYM 457

[8][TOP]
>UniRef100_A2Y810 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=A2Y810_ORYSI
          Length = 500

 Score =  172 bits (436), Expect = 2e-41
 Identities = 85/135 (62%), Positives = 107/135 (79%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEE++++V +SP RYRDV + ++P  SLH+R+  T+EE IN V DD  +  D    
Sbjct: 366 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 425

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM
Sbjct: 426 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 485

Query: 214 KLKLSARLDYLRRYV 170
           KLK   R++YLRRY+
Sbjct: 486 KLKHPTRVEYLRRYM 500

[9][TOP]
>UniRef100_C5YWL3 Putative uncharacterized protein Sb09g030110 n=1 Tax=Sorghum
           bicolor RepID=C5YWL3_SORBI
          Length = 501

 Score =  167 bits (423), Expect = 5e-40
 Identities = 86/136 (63%), Positives = 107/136 (78%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           RP T+EE+  +V ISP+RYRDV + ++P  SLH+R+  T+EE IN V DD  +  D   R
Sbjct: 366 RPATDEEVRRKVGISPQRYRDVLRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDAGGR 425

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLRLA+DD+LDSLKPKE+LVIRQRFGLDG+G RTL EIA NL+ISREMVRK+E+KAL
Sbjct: 426 HNTLLRLAIDDLLDSLKPKESLVIRQRFGLDGRGKRTLSEIAGNLSISREMVRKYELKAL 485

Query: 217 MKLKLSARLDYLRRYV 170
           MKLK   R++YLRRY+
Sbjct: 486 MKLKHPTRVEYLRRYM 501

[10][TOP]
>UniRef100_A9SLV0 Plastid sigma factor SIG5 n=2 Tax=Physcomitrella patens
           RepID=A9SLV0_PHYPA
          Length = 632

 Score =  118 bits (295), Expect = 4e-25
 Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSR-HITTEEEFINGVVDDGGLDGDNRR 398
           R PT +EI + + I+ +R+RD+ + +    SLH    IT  E+  N V ++  LD     
Sbjct: 497 RQPTNDEIRKHLGITADRFRDILRTNMRTSSLHEHDRITGREKVENLVSEEDALD-TLAG 555

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++++  LDDVLDSL+PKENLV+RQRFGLDGKG R+L E+   LN+SREMVR++E++ +
Sbjct: 556 GTSMVQYGLDDVLDSLRPKENLVLRQRFGLDGKGQRSLSEVGLILNLSREMVRRYELRGI 615

Query: 217 MKLKLSARLDYLRRYV 170
           +KL+   R++YLR Y+
Sbjct: 616 LKLQHPTRVEYLRNYL 631

[11][TOP]
>UniRef100_B9I544 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I544_POPTR
          Length = 97

 Score =  115 bits (288), Expect = 2e-24
 Identities = 57/65 (87%), Positives = 61/65 (93%)
 Frame = -2

Query: 361 LDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSARLDYL 182
           LDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKALMKLK   R+DYL
Sbjct: 33  LDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYL 92

Query: 181 RRYVV 167
           RRYVV
Sbjct: 93  RRYVV 97

[12][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R939_9THEO
          Length = 369

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI E++ ISPE+ R++ K +Q  +SL +     E+  +   ++D          
Sbjct: 233 REPTPEEIAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEA 292

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ALLR  L++VL SL P+E  V+R RFGLD    RTL E+     ++RE +R+ E K L
Sbjct: 293 SYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 352

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 353 RKLRHPSRSKKLKDYL 368

[13][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=Q9L4T2_NOSP7
          Length = 389

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 50/135 (37%), Positives = 78/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 254 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 313

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VLDSL P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 314 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 373

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 374 KLRHPNRNSVLKEYI 388

[14][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
           RepID=A0ZJC3_NODSP
          Length = 391

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 50/135 (37%), Positives = 78/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 256 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 315

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VLDSL P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 316 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 376 KLRHPNRNSVLKEYI 390

[15][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
           RepID=RPOD_SYNY3
          Length = 425

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 49/136 (36%), Positives = 80/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI E++ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 289 RRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 348

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 349 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 408

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 409 RKLRHPNRNSILKEYI 424

[16][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
           RepID=RPOD_ANASP
          Length = 390

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 50/135 (37%), Positives = 78/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 255 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 314

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VLDSL P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 315 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 374

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 375 KLRHPNRNSVLKEYI 389

[17][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
           RepID=C7QR23_CYAP0
          Length = 379

 Score = 85.1 bits (209), Expect = 4e-15
 Identities = 49/136 (36%), Positives = 80/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G + ++  
Sbjct: 243 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGENPEDEV 302

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 303 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 362

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 363 RKLRHPNRNSILKEYI 378

[18][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
           7420 RepID=B4W0Y8_9CYAN
          Length = 380

 Score = 85.1 bits (209), Expect = 4e-15
 Identities = 49/135 (36%), Positives = 79/135 (58%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI +R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 245 RKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDQVS 304

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 305 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 364

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 365 KLRHPNRNSILKEYI 379

[19][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
           RepID=Q59965_SYNP2
          Length = 375

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 49/135 (36%), Positives = 80/135 (59%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI ER+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 240 RKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDQVS 299

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
            +LLR  L++VLD+L  +E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 300 KSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 359

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 360 KLRHPNRNSILKEYI 374

[20][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
           RepID=B5VWQ7_SPIMA
          Length = 387

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 49/135 (36%), Positives = 78/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 252 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 311

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 312 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 371

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 372 KLRHPNRNSILKEYI 386

[21][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
           RepID=A0YTZ3_9CYAN
          Length = 391

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 49/135 (36%), Positives = 78/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 256 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 315

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 316 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 376 KLRHPNRNSILKEYI 390

[22][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7KDV7_CYAP7
          Length = 376

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 49/136 (36%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 240 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 299

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 300 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 359

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 360 RKLRHPNRNSILKEYI 375

[23][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WS32_CYAA5
          Length = 416

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 49/136 (36%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 280 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415

[24][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
           RepID=B0CDC4_ACAM1
          Length = 371

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 48/135 (35%), Positives = 79/135 (58%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 236 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 295

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
            +LLR  L+ VLD+L P+E  V++ R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 296 KSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 355

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 356 KLRHPNRNSVLKEYI 370

[25][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
           RepID=Q4C7J7_CROWT
          Length = 414

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 49/136 (36%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 278 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 337

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 338 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 397

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 398 RKLRHPNRNSILKEYI 413

[26][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
           RepID=B4AUJ5_9CHRO
          Length = 377

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 49/136 (36%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 241 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 300

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 301 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 360

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 361 RKLRHPNRNSILKEYI 376

[27][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3ISY9_9CHRO
          Length = 416

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 49/136 (36%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 280 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415

[28][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q8S9D0_GUITH
          Length = 490

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401
           R PTEEEI E++ +S E+ R V +++QP LSL  R +  +++   ++  ++      +  
Sbjct: 306 RSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE-RPLKNDDDASQLSDFIEADQESPEEH 364

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
            + ++LR  L++V++SL P+E  V+R R+GLD    +TL EI    +++RE VR+ E KA
Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424

Query: 220 LMKLKLSARLDYLRRYVV 167
           + KL+   R   LR YV+
Sbjct: 425 IRKLRQPYRSSILRDYVL 442

[29][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
          Length = 485

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401
           R PTEEEI E++ +S E+ R V +++QP LSL  R +  +++   ++  ++      +  
Sbjct: 306 RSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE-RPLKNDDDASQLSDFIEADQESPEEH 364

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
            + ++LR  L++V++SL P+E  V+R R+GLD    +TL EI    +++RE VR+ E KA
Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424

Query: 220 LMKLKLSARLDYLRRYVV 167
           + KL+   R   LR YV+
Sbjct: 425 IRKLRQPYRSSILRDYVL 442

[30][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q98RZ3_GUITH
          Length = 460

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401
           R PTEEEI +R+ +S E+ R+V +++QP LSL  R +  +++   ++  ++      +  
Sbjct: 289 RSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLE-RPLKNDDDTSQLSDFIEADQESPEEH 347

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
            + ++LR  L++V++SL P+E  V+R R+GLD    +TL EI    +++RE VR+ E KA
Sbjct: 348 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 407

Query: 220 LMKLKLSARLDYLRRYV 170
           + KL+   R   LR YV
Sbjct: 408 IRKLRQPYRSSILRDYV 424

[31][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
           RepID=Q2JS52_SYNJA
          Length = 404

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 49/135 (36%), Positives = 77/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ I+ E+ R + K++Q  +SL +     E+  +   ++  G   + R  
Sbjct: 269 RRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESEGETPEERVA 328

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL++L P+E  V++ R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 329 KVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 389 KLRHPNRNSVLKEYI 403

[32][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
           RepID=B0JGK3_MICAN
          Length = 416

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/136 (35%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  ++ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415

[33][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WPM0_9SYNE
          Length = 404

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/135 (35%), Positives = 77/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++   
Sbjct: 269 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDEVS 328

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
            +LLR  L+ VL +L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 329 KSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 389 KLRHPNRNSVLKEYI 403

[34][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
           RepID=B1PVV9_MICAE
          Length = 416

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/136 (35%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  ++ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415

[35][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
           RepID=A8YBI5_MICAE
          Length = 416

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/136 (35%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  ++ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415

[36][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
           RepID=RPOD_MICAE
          Length = 416

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/136 (35%), Positives = 79/136 (58%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
           +R PTEEEI  ++ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++  
Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L++VLD+L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415

[37][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
           RepID=Q892T0_CLOTE
          Length = 366

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
           R PT EEI + + IS +R R++ K +Q  +SL +     E+  +   + DD  L      
Sbjct: 230 REPTPEEIAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPAEAA 289

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              +L+  L +VLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 290 AFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 349

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 350 RKLRHPSRSKKLKDYL 365

[38][TOP]
>UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195
           RepID=Q3Z904_DEHE1
          Length = 520

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R PT +EI   + + PE+ R++ K SQ  +SL S     E+  +   ++D   L   +  
Sbjct: 384 REPTPDEIAVEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  +D VL SL P+E  V++ RFGL+    RTL E+    N++RE +R+ E KAL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 504 RKLRHPSRSRKLKDYL 519

[39][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
           JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
          Length = 403

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 48/135 (35%), Positives = 77/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ I+ E+ R + K++Q  +SL +     E+  +   ++  G   ++R  
Sbjct: 268 RKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDRVA 327

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL++L  +E  V++ R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 328 KVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 387

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 388 KLRHPNRNSVLKEYI 402

[40][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
           RepID=Q7NHG5_GLOVI
          Length = 400

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 48/135 (35%), Positives = 78/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 265 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDKVA 324

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL++L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 325 KNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 384

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 385 KLRHPNRNSVLKEYI 399

[41][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKT5_MOOTA
          Length = 361

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI   + I  ER R++ K +Q  +SL +     E+  +   ++D     ++ + 
Sbjct: 225 REPTPEEIAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIED-----EDAQA 279

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LLR  L++VL+SL P+E  V+R RFGLD    RTL E+     ++RE +R+ 
Sbjct: 280 PAEAASFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQI 339

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 340 EAKALRKLRHPSRSKKLKDYL 360

[42][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
           RepID=Q10UV2_TRIEI
          Length = 386

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 48/135 (35%), Positives = 76/135 (56%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI   + ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++   
Sbjct: 251 RKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDEVS 310

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL+SL P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 311 KNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 370

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 371 KLRHPNRNSILKEYI 385

[43][TOP]
>UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides
           RepID=A5FRQ7_DEHSB
          Length = 520

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R PT +EI   + + PE+ R++ K SQ  +SL S     E+  +   ++D   L   +  
Sbjct: 384 REPTPDEIALEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  +D VL SL P+E  V++ RFGL+    RTL E+    N++RE +R+ E KAL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 504 RKLRHPSRSRKLKDYL 519

[44][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
           20544 RepID=C9KNX0_9FIRM
          Length = 373

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R PT EEI + + I  +R R++ K +Q  +SL +     E+  +   ++D       +  
Sbjct: 237 REPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPADAA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L P+E  V+R RFGLD    RTL E+  N  ++RE +R+ E KAL
Sbjct: 297 SFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSRKLKDFL 372

[45][TOP]
>UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS
           RepID=A8CRQ1_9CHLR
          Length = 520

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R PT +EI   + + PE+ R++ K SQ  +SL S     E+  +   ++D   L   +  
Sbjct: 384 REPTPDEIALEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  +D VL SL P+E  V++ RFGL+    RTL E+    N++RE +R+ E KAL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 504 RKLRHPSRSRKLKDYL 519

[46][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
           M18 RepID=Q8P1I9_STRP8
          Length = 369

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[47][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
           M3 RepID=Q8K811_STRP3
          Length = 369

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[48][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
           BP-1 RepID=Q8DL79_THEEB
          Length = 418

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 47/135 (34%), Positives = 78/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI +R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 283 RKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 342

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL +L P+E  V++ R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 343 KHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 402

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 403 KLRHPNRNSVLKEYI 417

[49][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
           subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
          Length = 369

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[50][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
           zooepidemicus H70 RepID=C0MGY0_STRS7
          Length = 369

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[51][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
           4047 RepID=C0M883_STRE4
          Length = 369

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[52][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
           RepID=B9DRV6_STRU0
          Length = 369

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[53][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
           zooepidemicus MGCS10565 RepID=B4U2H7_STREM
          Length = 369

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[54][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
           RepID=A2RFA3_STRPG
          Length = 369

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[55][TOP]
>UniRef100_A4VWA5 RNA polymerase sigma factor n=6 Tax=Streptococcus suis
           RepID=A4VWA5_STRSY
          Length = 372

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++PE+ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 237 PTPEQIAERMDMTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 296

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 297 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 356

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 357 LRHPSRSKPLRDFI 370

[56][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
           6301 RepID=Q5N3Q1_SYNP6
          Length = 399

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 48/135 (35%), Positives = 76/135 (56%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++   
Sbjct: 264 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVA 323

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL +L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 384 KLRHPNRNSILKEYI 398

[57][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
           Az-Fu1 RepID=C1DV68_SULAA
          Length = 586

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398
           R PT EEI ++V +  E+ + + + SQ  +SL +   T EE  +   ++D   L  +   
Sbjct: 448 REPTPEEIAKKVGMPAEKVKKILRTSQEPISLETPIGTDEETHLGDFIEDKSVLSPEAHM 507

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               LR+ LD+VL +L  +E  V+R RFGL+   + TL ++     ++RE +R+ E KAL
Sbjct: 508 LKNALRMQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKAL 567

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R  YL+ ++
Sbjct: 568 RKLRHPHRAKYLKPFI 583

[58][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
           subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
          Length = 369

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367

[59][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
           PCC 7942 RepID=RPOD1_SYNE7
          Length = 399

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 48/135 (35%), Positives = 76/135 (56%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   ++   
Sbjct: 264 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVA 323

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL +L P+E  V+R R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 384 KLRHPNRNSILKEYI 398

[60][TOP]
>UniRef100_Q7VQR2 RNA polymerase sigma factor n=1 Tax=Candidatus Blochmannia
           floridanus RepID=Q7VQR2_BLOFL
          Length = 617

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLD-------G 410
           PT EE+ ER+ +S ++ R V K ++  +S+ +     E+  +   ++D  LD        
Sbjct: 481 PTPEELAERMFMSEDKIRKVLKIAKEPVSMETPIGDDEDSHLGDFIEDTNLDLPLDSATS 540

Query: 409 DNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHE 230
           DN      LR A +DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E
Sbjct: 541 DN------LRAATNDVLSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 594

Query: 229 VKALMKLKLSARLDYLRRYV 170
            KAL KL+  +R + L+ ++
Sbjct: 595 AKALRKLRHPSRSEILKSFL 614

[61][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
           100599 RepID=C0ZB92_BREBN
          Length = 376

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R P  EEI E++ ++PE+ R++ K +Q  +SL +     ++  +   ++D   L+  +  
Sbjct: 240 REPMPEEIAEKMDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAA 299

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 300 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 359

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 360 RKLRHPSRSKRLKDFL 375

[62][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
           RepID=C1PEH1_BACCO
          Length = 377

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R PT EEI E + ISP++ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 241 REPTPEEIAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHA 300

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 301 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 361 RKLRHPSRSKRLKDFL 376

[63][TOP]
>UniRef100_UPI0001BB55B2 RNA polymerase sigma factor RpoD n=1 Tax=Streptococcus sp.
           2_1_36FAA RepID=UPI0001BB55B2
          Length = 370

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 355 LRHPSRSKPLRDFI 368

[64][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           Y51 RepID=Q24T06_DESHY
          Length = 367

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI  ++ IS ER R++ K +Q  +SL +     E+  +   + D      +   
Sbjct: 231 REPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAA 290

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L++VL++L P+E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 291 SFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKAL 350

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 351 RKLRHPSRSKKLKDYL 366

[65][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
           RepID=B8HPM3_CYAP4
          Length = 378

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 47/135 (34%), Positives = 77/135 (57%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI  R+ ++ E+ R + K++Q  +SL +     E+  +   ++  G   +++  
Sbjct: 243 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 302

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL +L P+E  V++ R+GLD    +TL EI    N++RE +R+ E KAL 
Sbjct: 303 KNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 362

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 363 KLRHPNRNSVLKEYI 377

[66][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           DCB-2 RepID=B8FTY1_DESHD
          Length = 372

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI  ++ IS ER R++ K +Q  +SL +     E+  +   + D      +   
Sbjct: 236 REPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAA 295

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L++VL++L P+E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 296 SFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKAL 355

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 356 RKLRHPSRSKKLKDYL 371

[67][TOP]
>UniRef100_A8AXP5 RNA polymerase sigma factor n=1 Tax=Streptococcus gordonii str.
           Challis RepID=A8AXP5_STRGC
          Length = 370

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 355 LRHPSRSKPLRDFI 368

[68][TOP]
>UniRef100_A3CM49 RNA polymerase sigma factor n=1 Tax=Streptococcus sanguinis SK36
           RepID=A3CM49_STRSV
          Length = 370

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 355 LRHPSRSKPLRDFI 368

[69][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
           Tax=Geobacillus RepID=C9RYK5_9BACI
          Length = 375

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 239 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA 298

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[70][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
           RepID=B0P3M7_9CLOT
          Length = 363

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI E + I  ER R++ K SQ  +SL +     E+  +   + D     +N   
Sbjct: 227 REPSPEEIAEEMDIPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----ENVPV 281

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  LD+VL +L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 282 PADAAAFTLLKEQLDEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQI 341

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 342 EAKALRKLRHPSRSRKLKDYL 362

[71][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
           27755 RepID=B0G307_9FIRM
          Length = 382

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI   + +  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 246 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 300

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  LD+VLD+L  +E  V+R RFG+D    RTL E+    +++RE +R+ 
Sbjct: 301 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQI 360

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 361 EAKALRKLRHPSRSRKLRDYL 381

[72][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8EPY6_OCEIH
          Length = 380

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI E + + P++ RD+ K +Q  +SL +     ++  +   ++D   +   +  
Sbjct: 244 REPTPEEIGEEMELGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHA 303

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 304 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 363

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 364 RKLRHPSRSKRLKDFL 379

[73][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
           18311 RepID=Q5M3E3_STRT2
          Length = 369

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   L+ ++
Sbjct: 354 LRHPSRSKQLKDFI 367

[74][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
           RepID=Q03JL2_STRTD
          Length = 369

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   L+ ++
Sbjct: 354 LRHPSRSKQLKDFI 367

[75][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
           RepID=C5D4R8_GEOSW
          Length = 374

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 238 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 297

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 298 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 358 RKLRHPSRSKRLKDFL 373

[76][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
           27405 RepID=A3DDV0_CLOTH
          Length = 358

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + +++  E+ R++ K SQ  +SL +     E+  +   + D      +   
Sbjct: 222 REPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAA 281

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L DVLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 282 AFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 341

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 342 RKLRHPSRSKKLKDYL 357

[77][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
          Length = 358

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + +++  E+ R++ K SQ  +SL +     E+  +   + D      +   
Sbjct: 222 REPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAA 281

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L DVLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 282 AFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 341

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 342 RKLRHPSRSKKLKDYL 357

[78][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
           RepID=C6QPZ7_9BACI
          Length = 377

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 241 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 300

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 301 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 361 RKLRHPSRSKRLKDFL 376

[79][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
           RepID=C2LRD4_STRSL
          Length = 369

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   L+ ++
Sbjct: 354 LRHPSRSKQLKDFI 367

[80][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
          Length = 375

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 239 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 298

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[81][TOP]
>UniRef100_B2DVB6 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae
           CDC0288-04 RepID=B2DVB6_STRPN
          Length = 369

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD++LD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRQPSRSKPLRDFI 367

[82][TOP]
>UniRef100_P0A4J0 RNA polymerase sigma factor rpoD n=24 Tax=Streptococcus pneumoniae
           RepID=RPOD_STRR6
          Length = 369

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD++LD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR ++
Sbjct: 354 LRQPSRSKPLRDFI 367

[83][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
           RepID=B8I6N1_CLOCE
          Length = 359

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  +EI + + +S ++ R++ K SQ  +SL +     E+  +   + D     D+   
Sbjct: 223 REPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 277

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L DVLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 278 PAEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 337

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 338 EAKALRKLRHPSRSKKLKDYL 358

[84][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
           BAA-835 RepID=B2UM02_AKKM8
          Length = 688

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI E +H+  ER R V K +Q  +SL +    +++      ++D   +      
Sbjct: 548 REPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAAENPMEEA 607

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             + L+  + DVLD+L  +E  VI QRFGL     RTL E+    +++RE +R+ E KAL
Sbjct: 608 SFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKAL 667

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R+  ++ ++
Sbjct: 668 RKLRHPTRISKIKGFL 683

[85][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
           JW/NM-WN-LF RepID=B2A1Z3_NATTJ
          Length = 360

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E++ +S ++ R++ K +Q  +SL +     ++  +   ++D      + + 
Sbjct: 224 REPLPEEIAEQMDMSEDKVREILKIAQEPVSLETPIGEEDDSHLGDFIED-----QDAKP 278

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L++VLDSL P+E  V+R RFGLD    RTL E+  +  ++RE +R+ 
Sbjct: 279 PADAAAFELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQI 338

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+   R   L+ Y+
Sbjct: 339 EAKALRKLRHPMRSKRLKDYL 359

[86][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
           35185 RepID=C9LTA9_9FIRM
          Length = 375

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI E + IS ER R++ K +Q  +SL +     E+  +   ++D          
Sbjct: 239 REPSPEEIAEAMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 298

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L++VLD+L  +E  V+R RFGLD    RTL E+  N  ++RE +R+ E KAL
Sbjct: 299 SFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSRKLKDFL 374

[87][TOP]
>UniRef100_O33662 RNA polymerase sigma factor rpoD n=2 Tax=Streptococcus mutans
           RepID=RPOD_STRMU
          Length = 371

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 236 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 295

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    +++RE +R+ E KAL K
Sbjct: 296 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRK 355

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   LR +V
Sbjct: 356 LRHPSRSKQLRDFV 369

[88][TOP]
>UniRef100_Q896X6 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
           RepID=Q896X6_CLOTE
          Length = 282

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI E   IS E+ + +   SQ  +SL +     E+  +   + D     +++  
Sbjct: 146 REPTEEEIAETAEISIEKIKRIYNVSQDPVSLETPVGENEDTILQNFISDDRYLPEDKVT 205

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGD-RTLGEIASNLNISREMVRKHEVKAL 218
             +L   L +VL +L P+E  ++R R+GL G G+ RTL EI    N++RE +R+ E +A+
Sbjct: 206 EQMLGDTLSNVLSTLSPREERIVRLRYGLVGDGESRTLEEIGREFNLTRERIRQIEARAI 265

Query: 217 MKLKLSARLDYLRRY 173
            KL+   R+  L+ Y
Sbjct: 266 RKLRHPTRIKKLQGY 280

[89][TOP]
>UniRef100_Q6LV14 RNA polymerase sigma factor n=1 Tax=Photobacterium profundum
           RepID=Q6LV14_PHOPR
          Length = 612

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L       
Sbjct: 475 REPIPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAA 534

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LR A +DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 535 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 594

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R D LR ++
Sbjct: 595 RKLRHPSRSDVLRSFL 610

[90][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
           YO3AOP1 RepID=B2V7P9_SULSY
          Length = 590

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398
           R PT EEI ++  +  ++ R + + SQ  +SL +   + EE  +   ++D   L  +   
Sbjct: 452 REPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHM 511

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               LRL LD+VL +L  +E  V+R RFGL+   + TL ++     ++RE +R+ E KAL
Sbjct: 512 LKQALRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKAL 571

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R  YL+ ++
Sbjct: 572 RKLRHPHRAKYLKPFI 587

[91][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
           RepID=Q3D699_STRAG
          Length = 369

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   L+ ++
Sbjct: 354 LRHPSRSKQLKDFM 367

[92][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
           RepID=Q3CZ52_STRAG
          Length = 369

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD+VLD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
           L+  +R   L+ ++
Sbjct: 354 LRHPSRSKQLKDFM 367

[93][TOP]
>UniRef100_Q1Z4S6 RNA polymerase sigma factor n=1 Tax=Photobacterium profundum 3TCK
           RepID=Q1Z4S6_PHOPR
          Length = 612

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L       
Sbjct: 475 REPIPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAA 534

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LR A +DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 535 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 594

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R D LR ++
Sbjct: 595 RKLRHPSRSDVLRSFL 610

[94][TOP]
>UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
           prausnitzii A2-165 RepID=C7H3D6_9FIRM
          Length = 359

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD--GGLDGDNR 401
           R PT EEI  R+ + P+R R++ + +Q  +SL +     E+  +   + D   G+  D  
Sbjct: 222 REPTAEEIAVRLDMEPDRVRELLQLAQDPISLETPVGEEEDAHLEDFIQDEEAGVPVDEA 281

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
            +  LLR  L +VL SL P+E  V+  RFGL+    RTL E+    N++RE +R+ E KA
Sbjct: 282 GRE-LLRRELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKA 340

Query: 220 LMKLKLSARLDYLRRYV 170
           L KL+  +R   LR Y+
Sbjct: 341 LRKLRHPSRAKRLRDYL 357

[95][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
           14580 RepID=Q65H81_BACLD
          Length = 373

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[96][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
           RepID=A8FFA5_BACP2
          Length = 373

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[97][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
           FZB42 RepID=A7Z6T5_BACA2
          Length = 373

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[98][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
           RepID=C6JGK6_9FIRM
          Length = 375

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI + + +S ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 239 REPTPEEIAKEMDMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 293

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VL +L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 294 PADAAAFTLLKEQLVEVLSTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 353

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 354 EAKALRKLRHPSRSRKLKDYL 374

[99][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
           RepID=B0NBC7_EUBSP
          Length = 371

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI  ++ +  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 235 REPTPEEIAAQLDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 289

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  LD+VLD+L  +E  V+R RFG++    RTL E+    +++RE +R+ 
Sbjct: 290 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 349

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 350 EAKALRKLRHPSRSRKLRDYL 370

[100][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
           RepID=RPOD_BACSU
          Length = 371

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 235 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 294

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 295 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 354

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 355 RKLRHPSRSKRLKDFL 370

[101][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
           RepID=RPOD_BACHD
          Length = 372

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R P+ EE+ E + ++PE+ R++ K +Q  +SL +     ++  +   ++D   L   +  
Sbjct: 236 REPSPEEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAA 295

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 296 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 356 RKLRHPSRSKRLKDFL 371

[102][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
           255-15 RepID=B1YL80_EXIS2
          Length = 361

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG-DNRR 398
           R PT EEI + + I+PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 225 REPTPEEISKEMEITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAA 284

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 285 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 344

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 345 RKLRHPSRSKRLKDFL 360

[103][TOP]
>UniRef100_Q2BZN9 RNA polymerase sigma factor n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2BZN9_9GAMM
          Length = 616

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L       
Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAA 538

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LR A +DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 539 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R D LR ++
Sbjct: 599 RKLRHPSRSDVLRSFL 614

[104][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
           RepID=Q2B288_9BACI
          Length = 374

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI E + ++P++ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 238 REPTPEEIAEDMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA 297

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 298 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 358 RKLRHPSRSKRLKDFL 373

[105][TOP]
>UniRef100_Q1ZM24 RNA polymerase sigma factor n=1 Tax=Photobacterium angustum S14
           RepID=Q1ZM24_PHOAS
          Length = 616

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L       
Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAA 538

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LR A +DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 539 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R D LR ++
Sbjct: 599 RKLRHPSRSDVLRSFL 614

[106][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
           20745 RepID=C4CH81_9CHLR
          Length = 538

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI   + + P++ R++ K SQ  +SL       E+  +   ++D   L   +  
Sbjct: 402 REPTSEEIAAEMGLPPDKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAA 461

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  +DDVL SL  +E  V+  RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 462 SLKLLKEQVDDVLGSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKAL 521

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   LR Y+
Sbjct: 522 RKLRHPSRSKKLRDYL 537

[107][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
           RepID=C0C397_9CLOT
          Length = 370

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI   + +  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 234 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  LD+VLD+L  +E  V+R RFG++    RTL E+    +++RE +R+ 
Sbjct: 289 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 348

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 349 EAKALRKLRHPSRSRKLRDYL 369

[108][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
           RepID=A6BEL2_9FIRM
          Length = 369

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI   + +  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 233 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 287

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  LD+VLD+L  +E  V+R RFG++    RTL E+    +++RE +R+ 
Sbjct: 288 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 347

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 348 EAKALRKLRHPSRSRKLRDYL 368

[109][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
           DSM 15176 RepID=UPI0001966A7F
          Length = 364

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV--DDGGLDGDNRRQ 395
           P+ EEI ER+ +S ++ R++ + +Q  +SL +     E+  +   +  DD  +  +   Q
Sbjct: 230 PSAEEIAERLDMSVDKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQ 289

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LL+  L DVL +L P+E  V+R RFGL+    RTL E+    N++RE +R+ E KAL 
Sbjct: 290 -TLLKEQLADVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALR 348

Query: 214 KLKLSARLDYLRRYV 170
           KL+  +R   LR ++
Sbjct: 349 KLRHPSRSKKLRDFL 363

[110][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
           RepID=C4Z4Y6_EUBE2
          Length = 434

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI E + I  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 298 REPSPEEIAENMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 352

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VL +L  +E  V+R RFG+D    RTL E+    N++RE +R+ 
Sbjct: 353 PAEAAASTLLKEQLVEVLGTLTEREQKVLRLRFGMDDGRARTLEEVGKEFNVTRERIRQI 412

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 413 EAKALRKLRHPSRSRKLRDYL 433

[111][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
           RepID=B7GH73_ANOFW
          Length = 372

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D   D  +  +
Sbjct: 236 REPSPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ--DATSPAE 293

Query: 394 PA---LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224
            A   LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E K
Sbjct: 294 HAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK 353

Query: 223 ALMKLKLSARLDYLRRYV 170
           AL KL+  +R   L+ ++
Sbjct: 354 ALRKLRHPSRSKRLKDFL 371

[112][TOP]
>UniRef100_B5E4I8 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae G54
           RepID=B5E4I8_STRP4
          Length = 369

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 43/134 (32%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
           PT E+I ER+ ++P++ R++ K +Q  +SL +     ++  +   ++D  ++   +    
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            +LR  LD++LD+L  +E  V+R RFGLD    RTL ++    N++RE +R+ E KAL K
Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353

Query: 211 LKLSARLDYLRRYV 170
            +  +R   LR ++
Sbjct: 354 XRQPSRSKPLRDFI 367

[113][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
           RepID=C9L8C6_RUMHA
          Length = 330

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E +++S ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 194 REPHPEEIAEEMNMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 248

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VL +L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 249 PADAAAFTLLKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 308

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 309 EAKALRKLRHPSRSRKLKDYL 329

[114][TOP]
>UniRef100_C8W713 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Atopobium
           parvulum DSM 20469 RepID=C8W713_ATOPD
          Length = 455

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI   + +SP+R R++ K SQ  +SL +     E+  +   ++D   +   +  
Sbjct: 318 RDPTPEEIGSEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAVAPPDAA 377

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++LR  L+ VLDSL  +E  VI+ RFGL+    RTL E+     ++RE +R+ E K L
Sbjct: 378 SDSMLREQLEQVLDSLADRERKVIKFRFGLEDGHPRTLEEVGKEFGVTRERIRQIESKTL 437

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 438 AKLRHPSRSGRLKDYM 453

[115][TOP]
>UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4FZZ1_ABIDE
          Length = 372

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
           R P  EEI + +++ PE+ R + K +Q  +S  +     E+  I   + DD  +      
Sbjct: 236 REPQPEEIGKELNMEPEKVRSIMKIAQEPVSFETPIGEEEDSHIGDFIPDDSNMAPVEAA 295

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             A+L+  L++VLDSL  +E  VI+ RFGL+    RTL E+    N++RE +R+ E KAL
Sbjct: 296 THAILKEQLEEVLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKAL 355

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 356 RKLRQPSRSRKLKDYL 371

[116][TOP]
>UniRef100_C4FWR1 RNA polymerase sigma factor n=1 Tax=Catonella morbi ATCC 51271
           RepID=C4FWR1_9FIRM
          Length = 379

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R PT EEI   + +  E+ R++ K +Q  +SL +     ++  +   ++D G +  +   
Sbjct: 243 REPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEGAMSPEVFT 302

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ALLR  L+DVLD+L  +E  V+R RFGLD    RTL ++     ++RE +R+ E KAL
Sbjct: 303 SSALLREQLEDVLDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKAL 362

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 363 RKLRHPSRSKQLKDFL 378

[117][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
           10507 RepID=C0CQD9_9FIRM
          Length = 374

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI + + +S +R R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 238 REPTPEEIAKEMEMSVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 292

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VL +L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 293 PADAAAFTLLKEQLVEVLSTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 352

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 353 EAKALRKLRHPSRSRKLKDYL 373

[118][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
           Nor1 RepID=A1HPB3_9FIRM
          Length = 368

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI   + IS ER R++ K +Q  +SL +     E+  +   ++D          
Sbjct: 232 REPTPEEIAREMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 291

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L++VL++L P+E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 292 SFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKAL 351

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 352 RKLRHPSRSKKLKDFL 367

[119][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LQB0_PICSI
          Length = 495

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHI--TTEEEFINGVVDDGGLDGDN 404
           +R PT+EE+ E   IS  R R VT+ S+   SL  R +    +E+F   V D      + 
Sbjct: 357 KRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSL-DRCVGKDMDEKFSEIVADTNSESTET 415

Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224
                L +  LD VLD+L  +E  V+R R+GLD    ++L E+  N ++SRE VR+ E+K
Sbjct: 416 IVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMK 475

Query: 223 ALMKLKLSARLDYLRRYV 170
           A+ KL+ + R  +L+ Y+
Sbjct: 476 AMRKLRQNHRTQHLKHYL 493

[120][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LLW6_PICSI
          Length = 592

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
 Frame = -2

Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHI--TTEEEFINGVVDDGGLDGDN 404
           +R PT+EE+ E   IS  R R VT+ S+   SL  R +    +E+F   V D      + 
Sbjct: 454 KRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSL-DRCVGKDMDEKFSEIVADTNSESTET 512

Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224
                L +  LD VLD+L  +E  V+R R+GLD    ++L E+  N ++SRE VR+ E+K
Sbjct: 513 IVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMK 572

Query: 223 ALMKLKLSARLDYLRRYV 170
           A+ KL+ + R  +L+ Y+
Sbjct: 573 AMRKLRQNHRTQHLKHYL 590

[121][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
           RepID=UPI0001851148
          Length = 337

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 201 REPSPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHA 260

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 261 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 320

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 321 RKLRHPSRSKRLKDFL 336

[122][TOP]
>UniRef100_UPI00017446E0 RNA polymerase sigma factor RpoD n=1 Tax=Verrucomicrobium spinosum
           DSM 4136 RepID=UPI00017446E0
          Length = 576

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSR--HITTEEEFINGVVDDGGLDGDNR 401
           R PT +EI E +H+  ER   V + SQ  +SL ++      + EF + + D+  +     
Sbjct: 437 RDPTPDEIAEEIHLPVERVNAVLRMSQQPVSLQTKVGDSDGDTEFGDFIEDNTSVSPMEL 496

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGL-DGKGDRTLGEIASNLNISREMVRKHEVK 224
               LLR  L DVLDSL  +E  V+ QRFGL DG G RTL E+    +++RE +R+ E K
Sbjct: 497 TAMNLLRDKLKDVLDSLTDRERAVLEQRFGLVDGSG-RTLEEVGRQFHVTRERIRQIEAK 555

Query: 223 ALMKLKLSARL 191
           AL KL+   R+
Sbjct: 556 ALRKLRHPTRI 566

[123][TOP]
>UniRef100_Q493Y1 RNA polymerase sigma factor n=1 Tax=Candidatus Blochmannia
           pennsylvanicus str. BPEN RepID=Q493Y1_BLOPB
          Length = 611

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 7/140 (5%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLD-------G 410
           PT EE+ ER+ +S ++ R V K ++  +S+ +     E+  +   ++D   D        
Sbjct: 476 PTPEELAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATS 535

Query: 409 DNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHE 230
           DN      LR A  D+L  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E
Sbjct: 536 DN------LRTATHDILSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 589

Query: 229 VKALMKLKLSARLDYLRRYV 170
            KAL KL+  +R + LR ++
Sbjct: 590 AKALRKLRHPSRSEILRSFL 609

[124][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
           RepID=B1HTI2_LYSSC
          Length = 375

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 239 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 298

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[125][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
           RepID=A7GSY8_BACCN
          Length = 373

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R PT EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPTPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[126][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
           sphaericus RepID=O52862_BACSH
          Length = 140

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 4   REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 63

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 64  AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 123

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 124 RKLRHPSRSKRLKDFL 139

[127][TOP]
>UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552
           RepID=B1C3P6_9FIRM
          Length = 415

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNR 401
           R PT EEI ER+  ++PE+ R++ K S   +SL +     ++  +   ++D G +  D+ 
Sbjct: 277 REPTAEEIAERIDGMTPEKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGVMSPDDY 336

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
               LL+  L++VL  L  +E  V+R RFGLD    RTL E+    +++RE +R+ E KA
Sbjct: 337 AANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKA 396

Query: 220 LMKLKLSARLDYLRRYV 170
           L KLK  +R   L+ ++
Sbjct: 397 LRKLKHPSRSKRLKDFL 413

[128][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
           RepID=B0ME78_9FIRM
          Length = 370

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + I  +R R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 234 REPLPEEIAEEMDIPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VL +L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 289 PADAAAFTLLKEQLSEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQI 348

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 349 EAKALRKLRHPSRSRKLKDYL 369

[129][TOP]
>UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
           M21/2 RepID=A8SFN0_9FIRM
          Length = 360

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV--DDGGLDGDNR 401
           R PT EEI   + + P++ R++ + SQ  +SL +     E+  +   +  +D G+  D  
Sbjct: 223 REPTVEEIAAALDMEPDKVRELLQLSQEPISLETPVGEEEDAHLEDFIQDEDAGVPVDEA 282

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
            +  LLR  L  VL SL P+E  VI  RFGL+    RTL E+    N++RE VR+ E KA
Sbjct: 283 GRQ-LLRRELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKA 341

Query: 220 LMKLKLSARLDYLRRYV 170
           L KL+  +R   LR Y+
Sbjct: 342 LRKLRHPSRAKLLRDYL 358

[130][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67RX0_SYMTH
          Length = 388

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI   + I  ER R++ K +Q  +SL +     E+  +   ++D          
Sbjct: 252 REPTPEEIAAVMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 311

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L++VL+SL P+E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 312 SFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKAL 371

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 372 RKLRHPSRSKKLKDYL 387

[131][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WHD0_BACSK
          Length = 373

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EE+ + + +SP++ R++ K +Q  +SL +     ++  +   ++D   L   +  
Sbjct: 237 REPTPEEVGKEMDLSPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[132][TOP]
>UniRef100_Q5E2J7 RNA polymerase sigma factor n=1 Tax=Vibrio fischeri ES114
           RepID=Q5E2J7_VIBF1
          Length = 613

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+   +  
Sbjct: 476 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 535

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               L+ A +DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 536 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 596 RKLRHPSRSEVLRSFL 611

[133][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
           RepID=C4L3Z9_EXISA
          Length = 364

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R P+ EEI + + ++PE+ R++ K +Q  +SL +     ++  +   ++D   +   +  
Sbjct: 228 REPSPEEIAKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAA 287

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 288 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 347

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 348 RKLRHPSRSKRLKDFL 363

[134][TOP]
>UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
           RepID=B9L1K5_THERP
          Length = 340

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING--VVDDGGLDGDNR 401
           R PT EEI E + + PE+   + +A+Q  +SL  + ++ E+E   G  + D+     +  
Sbjct: 203 RQPTPEEIAEAMSVQPEKIAQIVRAAQRAVSL-DQPLSEEDETSLGDLIADELAQSPEEL 261

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
            + +L+R  + ++L+ L P+E LV++ R+GL     RTL E+   L ISRE VR+ E +A
Sbjct: 262 AEESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEA 321

Query: 220 LMKLKLSAR 194
           L KL+  AR
Sbjct: 322 LRKLRRIAR 330

[135][TOP]
>UniRef100_B6EM18 RNA polymerase sigma factor n=1 Tax=Aliivibrio salmonicida LFI1238
           RepID=B6EM18_ALISL
          Length = 610

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+   +  
Sbjct: 473 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 532

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               L+ A +DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 533 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 592

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 593 RKLRHPSRSEVLRSFL 608

[136][TOP]
>UniRef100_B5FB86 RNA polymerase sigma factor n=1 Tax=Vibrio fischeri MJ11
           RepID=B5FB86_VIBFM
          Length = 613

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+   +  
Sbjct: 476 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 535

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               L+ A +DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 536 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 596 RKLRHPSRSEVLRSFL 611

[137][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
           RepID=A4J7B9_DESRM
          Length = 367

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI + + IS E+ R++ K +Q  +SL +     E+  +   ++D      + R 
Sbjct: 231 REPSPEEIAKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDA-----DARA 285

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LLR  LD+VL +L  +E  V+R RFGLD    RTL E+     ++RE +R+ 
Sbjct: 286 PAEEASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 345

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E K L KL+  +R   L+ Y+
Sbjct: 346 EAKTLRKLRHPSRSKKLKDYL 366

[138][TOP]
>UniRef100_A2RIN0 RNA polymerase sigma factor n=2 Tax=Lactococcus lactis subsp.
           cremoris RepID=A2RIN0_LACLM
          Length = 447

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407
           R P+ EEI + +H++P++ R+V K +Q  +SL +     ++    +FI   V +  +D  
Sbjct: 312 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 371

Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227
           NR    LLR  LD+V+D+L  +E  V+R RFGLD     TL ++     ++RE +R+ E 
Sbjct: 372 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 428

Query: 226 KALMKLKLSARLDYLRRYV 170
           KA+ KL+   R   LR ++
Sbjct: 429 KAIKKLRHPRRSKPLRDFM 447

[139][TOP]
>UniRef100_B5WPE5 RNA polymerase sigma factor n=1 Tax=Burkholderia sp. H160
           RepID=B5WPE5_9BURK
          Length = 665

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
 Frame = -2

Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377
           + ER+ +S E+ R + K ++  +SL +      +  +  +++D  +    +    A LR 
Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSLETPVGDDGDATLGDMIEDAAVSSPADAAMQADLRA 594

Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197
           A+DD LDSL P+E  V+R R+G++ K D TL E+    +++RE +R+ E KA+ KL   +
Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654

Query: 196 RLDYLRRYV 170
           R D L+ ++
Sbjct: 655 RADRLKSFL 663

[140][TOP]
>UniRef100_P58290 RNA polymerase sigma factor rpoD (Fragment) n=1 Tax=Lactococcus
           lactis subsp. cremoris RepID=RPOD_LACLC
          Length = 364

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407
           R P+ EEI + +H++P++ R+V K +Q  +SL +     ++    +FI   V +  +D  
Sbjct: 229 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 288

Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227
           NR    LLR  LD+V+D+L  +E  V+R RFGLD     TL ++     ++RE +R+ E 
Sbjct: 289 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 345

Query: 226 KALMKLKLSARLDYLRRYV 170
           KA+ KL+   R   LR ++
Sbjct: 346 KAIKKLRHPRRSKPLRDFM 364

[141][TOP]
>UniRef100_Q04506 RNA polymerase sigma factor rpoD n=1 Tax=Lactococcus lactis subsp.
           lactis RepID=RPOD_LACLA
          Length = 386

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407
           R P+ EEI + +H++P++ R+V K +Q  +SL +     ++    +FI   V +  +D  
Sbjct: 251 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 310

Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227
           NR    LLR  LD+V+D+L  +E  V+R RFGLD     TL ++     ++RE +R+ E 
Sbjct: 311 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 367

Query: 226 KALMKLKLSARLDYLRRYV 170
           KA+ KL+   R   LR ++
Sbjct: 368 KAIKKLRHPRRSKPLRDFM 386

[142][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
           RepID=C0QRZ3_PERMH
          Length = 577

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398
           R PT EEI ++V + PE+ R + + SQ  +SL +     +E  +   ++D   +  +   
Sbjct: 440 REPTPEEIAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESHLGDFIEDKTVMSPEQHV 499

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               LR  L++VL +L  +E  V+R RFGL+   + TL ++     ++RE +R+ E KAL
Sbjct: 500 LRQALRQQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKAL 559

Query: 217 MKLKLSARLDYLRRY 173
            KL+   R  YLR +
Sbjct: 560 RKLRHPHRAKYLRPF 574

[143][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
           RepID=B8CXH1_HALOH
          Length = 358

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R PT EEI E + +  E+ R++ K +Q  +SL +     E+  +   ++D       +  
Sbjct: 222 REPTPEEIGEEMGMPAEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDEDAPAPASAA 281

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  LDDVLD+L  +E  V+  RFGL+    RTL E+     ++RE +R+ E KAL
Sbjct: 282 SFTLLREQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKAL 341

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 342 RKLRHPSRSKKLKDYL 357

[144][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
          Length = 368

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI   + ++PE+ R++ K +Q  +SL +     ++  +   + D     D    
Sbjct: 232 REPTPEEIAAEMDLTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPD-----DEAPA 286

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ 
Sbjct: 287 PADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQI 346

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ ++
Sbjct: 347 EAKALRKLRHPSRSKRLKDFL 367

[145][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
           RepID=A7AZ88_RUMGN
          Length = 371

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + + +  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 235 REPLPEEIAKELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 289

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  LD+VLD+L  +E  V+R RFG++    RTL E+    +++RE +R+ 
Sbjct: 290 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 349

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 350 EAKALRKLRHPSRSRKLRDYL 370

[146][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
           RepID=A5ZYP8_9FIRM
          Length = 330

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI E + +  +R R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 194 REPTPEEIAEEMKMPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 248

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VL +L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 249 PADAAAFTLLKEQLIEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 308

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 309 EAKALRKLRHPSRSRKLKDYL 329

[147][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
           RepID=A5KQA4_9FIRM
          Length = 383

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + + +  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 247 REPLPEEIAKELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 301

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  LD+VLD+L  +E  V+R RFG++    RTL E+    +++RE +R+ 
Sbjct: 302 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 361

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 362 EAKALRKLRHPSRSRKLRDYL 382

[148][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
           RepID=A3IBK5_9BACI
          Length = 375

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 239 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 298

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DV+D+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVIDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[149][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
           DSM 15897 RepID=UPI000196B4EB
          Length = 418

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNR 401
           R PT EEI E++  ++P + R++ K S   +SL +     ++  +   ++D G +  D+ 
Sbjct: 280 REPTAEEIAEKMDGMTPAKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGAMSPDDY 339

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
               LL+  L++VL  L  +E  V+R RFGLD    RTL E+    N++RE +R+ E KA
Sbjct: 340 ASNELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKA 399

Query: 220 LMKLKLSARLDYLRRYV 170
           L KLK  +R   L+ ++
Sbjct: 400 LRKLKHPSRSKRLKDFL 416

[150][TOP]
>UniRef100_Q1QBP8 RNA polymerase sigma factor n=1 Tax=Psychrobacter cryohalolentis K5
           RepID=Q1QBP8_PSYCK
          Length = 648

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R PT EE+ ER+ +   + R V K ++  +S+ +     E+  +   ++DG +    +  
Sbjct: 510 REPTPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDA 569

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             A LR A  DVL +L  +E  V++ RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 570 TAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKAL 629

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R ++LR ++
Sbjct: 630 RKLRHPSRSEHLRSFL 645

[151][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
           carnosus TM300 RepID=B9DNN2_STACT
          Length = 369

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D  +   +   
Sbjct: 233 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHA 292

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 293 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 352

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 353 RKLRHPSRSKRLKDFM 368

[152][TOP]
>UniRef100_B3DW95 RNA polymerase sigma factor n=1 Tax=Methylacidiphilum infernorum V4
           RepID=B3DW95_METI4
          Length = 623

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI +   +S +R R + K +Q  +SL ++   +E+      ++D   +  +   
Sbjct: 482 REPTPEEIADETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMT 541

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             +LLR  + DVL +L  +E  VI QRFGL     RTL E+     ++RE +R+ E KAL
Sbjct: 542 GYSLLREKIKDVLGTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKAL 601

Query: 217 MKLKLSARLDYLRRYV 170
            K++   RL +L+ ++
Sbjct: 602 RKMRHPTRLRHLKGFL 617

[153][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
           RepID=A5GSD3_SYNR3
          Length = 401

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 47/135 (34%), Positives = 76/135 (56%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI E + ++ E+ R + K++Q  +SL +     E+  +   ++    + D    
Sbjct: 266 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIENPDQDVA 325

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL +L P+E  V+R R+GLD    +TL EI    +++RE +R+ E KAL+
Sbjct: 326 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALL 385

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 386 KLRHPNRNGVLKEYI 400

[154][TOP]
>UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Desulfotomaculum acetoxidans DSM 771
           RepID=C8W3K2_9FIRM
          Length = 359

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + ++I+ ++ R++ K +Q  +SL +     E+  +   ++D      + R 
Sbjct: 223 REPMPEEIAKEMNITEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIED-----HDARA 277

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LLR  LDDVL +L  +E  V+R RFGLD    RTL E+     ++RE +R+ 
Sbjct: 278 PAEEASFTLLREQLDDVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 337

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E K L KL+  +R   L+ Y+
Sbjct: 338 EAKTLRKLRHPSRSKKLKDYL 358

[155][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium papyrosolvens DSM 2782
           RepID=C7IFS3_9CLOT
          Length = 359

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  +EI + + +S ++ R++ K SQ  +SL +     E+  +   + D     D+   
Sbjct: 223 REPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 277

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L DVLD+L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 278 PAEAAAFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 337

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 338 EAKALRKLRHPSRSKKLKDYL 358

[156][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
           RepID=C4V565_9FIRM
          Length = 382

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGL-DGDNRR 398
           R PT EEI  R+ +S  R R++ K SQ  +SL +     E+  ++  ++D    D  +  
Sbjct: 245 RDPTPEEIAHRMGLSVARVREIMKISQEPVSLETPIGEEEDTRLSDFIEDEAAPDPADAA 304

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  + +VL +L P+E  V+R RFGL     RTL E+  N  ++RE +R+ E KAL
Sbjct: 305 SMLLLKEQISEVLTTLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKAL 364

Query: 217 MKLKLSARLDYLR 179
            KL+   RL  L+
Sbjct: 365 RKLRHPVRLRKLQ 377

[157][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
           14600 RepID=C4G971_9FIRM
          Length = 614

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI   +  +P+R R++ K SQ  +SL +     E+  +   + D     +N   
Sbjct: 478 REPSPEEIAREMETTPDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----ENAPV 532

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L++VLD+L  +E  V+  RFGL+    RTL E+    N++RE +R+ 
Sbjct: 533 PAEAATFTLLKEQLNEVLDTLTERERKVLILRFGLEDGRGRTLEEVGKEFNVTRERIRQI 592

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 593 EAKALRKLRHPSRSRKLKDYL 613

[158][TOP]
>UniRef100_C2D7B9 RNA polymerase sigma factor n=1 Tax=Atopobium vaginae DSM 15829
           RepID=C2D7B9_9ACTN
          Length = 441

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI E++ +S +R R++ K SQ  +SL +     E+  +   ++D   +   +  
Sbjct: 304 REPTPEEIGEQMKMSADRVREIQKISQEPVSLETPIGEEEDSSLGDFIEDSTAVAPPDAA 363

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++LR  L+ VLD L  +E  VI+ RFGL+    RTL E+     ++RE +R+ E K L
Sbjct: 364 SDSMLREQLNQVLDGLADRERKVIKFRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTL 423

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 424 AKLRHPSRSGRLKDYI 439

[159][TOP]
>UniRef100_B9CNX8 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626
           RepID=B9CNX8_9ACTN
          Length = 455

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI   + +SP+R R++ K SQ  +SL +     E+  +   ++D   +   +  
Sbjct: 318 RDPTPEEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAA 377

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++LR  L+ VLD L  +E  VI+ RFGL+    RTL E+     ++RE +R+ E K L
Sbjct: 378 SDSMLREQLEQVLDGLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTL 437

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 438 AKLRHPSRSSRLKDYM 453

[160][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
           29176 RepID=B5CM66_9FIRM
          Length = 372

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + + +  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 236 REPLPEEIAKEMDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 290

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  LD+VLD+L  +E  V+R RFG++    RTL E+    +++RE +R+ 
Sbjct: 291 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQI 350

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 351 EAKALRKLRHPSRSRKLRDYL 371

[161][TOP]
>UniRef100_A6D7V7 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1
           RepID=A6D7V7_9VIBR
          Length = 616

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+   +  
Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPVDSA 538

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               LR+A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 539 TMTSLRVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 599 RKLRHPSRSETLRSFL 614

[162][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
          Length = 525

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSL------HSRHITTEEEFINGVVDDGGLD 413
           RPPT EEI   + +S E+   + KA+Q  +SL       ++  T E+  I     D   +
Sbjct: 378 RPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLI-----DANAE 432

Query: 412 GDNRRQ-PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRK 236
           G  +    +LL+  L++VL++L P+E  V+R R+GLD    +TL EI +  +++RE +R+
Sbjct: 433 GPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQ 492

Query: 235 HEVKALMKLKLSARLDYLRRYVV 167
            E KAL KLK  +R   L+ Y V
Sbjct: 493 IEAKALRKLKQPSRNQVLQEYFV 515

[163][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
           A1055 RepID=UPI0001B41595
          Length = 373

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[164][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
           tengcongensis RepID=Q8R970_THETN
          Length = 372

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EE+ + + +  E+ R++ K +Q  +SL +     E+  +   + D          
Sbjct: 236 REPTPEELAKEMGMPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 295

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              +L+  L DVLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 296 AYTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 355

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 356 RKLRHPSRSKKLKDFL 371

[165][TOP]
>UniRef100_Q4FS98 RNA polymerase sigma factor n=1 Tax=Psychrobacter arcticus 273-4
           RepID=Q4FS98_PSYA2
          Length = 647

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R PT EE+ ER+ +   + R V K ++  +S+ +     E+  +   ++DG +    +  
Sbjct: 509 REPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDA 568

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             A LR A  DVL +L  +E  V++ RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 569 TAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKAL 628

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R ++LR ++
Sbjct: 629 RKLRHPSRSEHLRSFL 644

[166][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
           RepID=C3LKX1_BACAC
          Length = 373

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[167][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
           6725 RepID=B9MQ36_ANATD
          Length = 417

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
           R PT EEI + +++  E+ R++ K +Q  +SL +     E+  +   + DD  L      
Sbjct: 281 REPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAA 340

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++L+  L +VLDSL  +E  V++ RFGL+    RTL E+    N++RE +R+ E KAL
Sbjct: 341 AYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 400

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 401 RKLRHPSRSKKLKDFL 416

[168][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
           RepID=B9IY60_BACCQ
          Length = 375

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[169][TOP]
>UniRef100_A7MWQ8 RNA polymerase sigma factor n=1 Tax=Vibrio harveyi ATCC BAA-1116
           RepID=A7MWQ8_VIBHB
          Length = 620

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L++A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 603 RKLRHPSRSETLRSFL 618

[170][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
           saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
          Length = 411

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
           R PT EEI + +++  E+ R++ K +Q  +SL +     E+  +   + DD  L      
Sbjct: 275 REPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAA 334

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++L+  L +VLDSL  +E  V++ RFGL+    RTL E+    N++RE +R+ E KAL
Sbjct: 335 AYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 394

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 395 RKLRHPSRSKKLKDFL 410

[171][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
           F0254 RepID=C9MZ09_9FUSO
          Length = 392

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           + PT EE+ E++ +  E+ + + + +Q  +SL +   + E+  +   V+D       +  
Sbjct: 256 KEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDAT 315

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  LD+VL +L  +E +V+R R+GLD    +TL E+    N++RE +R+ EVKAL
Sbjct: 316 TRVLLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKAL 375

Query: 217 MKLKLSARLDYLRRY 173
            KL+  +R   L  Y
Sbjct: 376 RKLRHPSRRKKLEDY 390

[172][TOP]
>UniRef100_C8KWQ0 RNA polymerase sigma factor RpoD n=1 Tax=Actinobacillus minor 202
           RepID=C8KWQ0_9PAST
          Length = 621

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R  T EE+ ER+++  ++ R V K ++  +S+ +     ++  +   + D  L+      
Sbjct: 484 REATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 543

Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LR+A ++VL+ L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 544 TAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 604 RKLRHPSRSETLRSFL 619

[173][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
           subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
          Length = 357

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EE+ + + +  E+ R++ K +Q  +SL +     E+  +   + D          
Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              +L+  L DVLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 341 RKLRHPSRSKKLKDFL 356

[174][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
           RepID=C6PMA8_9THEO
          Length = 357

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EE+ + + +  E+ R++ K +Q  +SL +     E+  +   + D          
Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              +L+  L DVLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 341 RKLRHPSRSKKLKDFL 356

[175][TOP]
>UniRef100_C5S146 RNA polymerase sigma factor n=1 Tax=Actinobacillus minor NM305
           RepID=C5S146_9PAST
          Length = 621

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R  T EE+ ER+++  ++ R V K ++  +S+ +     ++  +   + D  L+      
Sbjct: 484 REATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 543

Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LR+A ++VL+ L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 544 TAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 604 RKLRHPSRSETLRSFL 619

[176][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
           RepID=B0K6Y0_THEPX
          Length = 357

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EE+ + + +  E+ R++ K +Q  +SL +     E+  +   + D          
Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              +L+  L DVLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 341 RKLRHPSRSKKLKDFL 356

[177][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
          Length = 373

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[178][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
           RepID=C2YWN0_BACCE
          Length = 375

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[179][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
           RepID=C2WC75_BACCE
          Length = 373

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[180][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
           RepID=C2U2P5_BACCE
          Length = 375

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[181][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
           RepID=B7HCR6_BACC4
          Length = 375

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[182][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
           RepID=A9VHS1_BACWK
          Length = 375

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[183][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
           RepID=C2PK08_BACCE
          Length = 375

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[184][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
           RepID=B7HPJ2_BACC7
          Length = 375

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[185][TOP]
>UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
           RepID=C0FBN4_9CLOT
          Length = 372

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EE+ E++ +  ER R++ K SQ  +SL +     E+  +   + D  +    +  
Sbjct: 236 REPSAEELAEKLDMPVERVREIMKISQDPVSLETPIGEEEDSHLGDFIQDDHVQVPVDAA 295

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL   L +VLD+L  +E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 296 TYTLLHEQLMEVLDTLTDREQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKAL 355

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 356 RKLRHPSRSRKLKDYL 371

[186][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
           43243 RepID=B7AQM8_9BACE
          Length = 448

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EEI + + I  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 312 REPTPEEIAKEMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 366

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      +L+  L +VL +L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 367 PAEEAASTILKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQI 426

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR ++
Sbjct: 427 EAKALRKLRHPSRSRKLRDFL 447

[187][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
           RepID=B7IYE3_BACC2
          Length = 375

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[188][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
           RepID=A0RIR5_BACAH
          Length = 373

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P+ EEI E + ++PE+ R++ K +Q  +SL +     ++  +   ++D       +  
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372

[189][TOP]
>UniRef100_A8T8H9 RNA polymerase sigma factor n=1 Tax=Vibrio sp. AND4
           RepID=A8T8H9_9VIBR
          Length = 620

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L++A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 603 RKLRHPSRSETLRSFL 618

[190][TOP]
>UniRef100_A6B6J7 RNA polymerase sigma factor n=2 Tax=Vibrio parahaemolyticus
           RepID=A6B6J7_VIBPA
          Length = 620

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L++A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 603 RKLRHPSRSETLRSFL 618

[191][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
          Length = 316

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
           R PT EEI + + ISPE+ R++ K SQ  +SL +      +  +   ++D   L   +  
Sbjct: 180 REPTPEEIGKEMDISPEKVREIQKVSQEPVSLETPVGEESDSNLGDFIEDQDALAPADAA 239

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L++VLD+L  +E  V+R RFGL+    RTL E+     ++RE +R+ E KAL
Sbjct: 240 AFELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKAL 299

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 300 RKLRHPSRSKRLKDFL 315

[192][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L6R1_STAHJ
          Length = 368

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367

[193][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
          Length = 368

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367

[194][TOP]
>UniRef100_Q13R65 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400
           RepID=Q13R65_BURXL
          Length = 665

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
 Frame = -2

Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377
           + ER+ +S E+ R + K ++  +S+ +      +  +  +++D       +    A LR 
Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRA 594

Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197
           A+DD LDSL P+E  V+R R+G++ K D TL E+    +++RE +R+ E KA+ KL   +
Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654

Query: 196 RLDYLRRYV 170
           R D L+ ++
Sbjct: 655 RADRLKSFL 663

[195][TOP]
>UniRef100_C5CDI4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1
           RepID=C5CDI4_KOSOT
          Length = 405

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ-P 392
           PT EE+ +    +PE+  ++  AS+  +SL S     EE  +   V D  ++        
Sbjct: 263 PTVEELGKLTGKTPEKIEEILAASKETVSLESPISGDEESTMGDFVHDESIEKPEEAAIK 322

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
            LLR  +D+VLD+L P+E +V++ R+G LDGK  +TL E+    N++RE +R+ EVKAL 
Sbjct: 323 MLLREQIDEVLDTLSPREAMVLKMRYGLLDGK-TKTLEEVGQFFNVTRERIRQIEVKALR 381

Query: 214 KLKLSARLDYLR 179
           KL+  +R   L+
Sbjct: 382 KLRHPSRSKQLK 393

[196][TOP]
>UniRef100_B3H2B0 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae
           serovar 7 str. AP76 RepID=B3H2B0_ACTP7
          Length = 619

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R  T EE+ ER+ +  ++ R V K ++  +S+ +     ++  +   + D  L+      
Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541

Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LRLA ++VL+ L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 602 RKLRHPSRSETLRSFL 617

[197][TOP]
>UniRef100_B2TBE5 RNA polymerase sigma factor n=1 Tax=Burkholderia phytofirmans PsJN
           RepID=B2TBE5_BURPP
          Length = 665

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
 Frame = -2

Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377
           + ER+ +S E+ R + K ++  +S+ +      +  +  +++D       +    A LR 
Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRA 594

Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197
           A+DD LDSL P+E  V+R R+G++ K D TL E+    +++RE +R+ E KA+ KL   +
Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654

Query: 196 RLDYLRRYV 170
           R D L+ ++
Sbjct: 655 RADRLKSFL 663

[198][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
           audaxviator MP104C RepID=B1I1U1_DESAP
          Length = 360

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI   + IS ++ R++ K +Q  +SL +     E+  +   ++D          
Sbjct: 224 REPLPEEIAREMDISEDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAQAPAEEA 283

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  LDDVL +L  +E  V+R RFGLD    RTL E+     ++RE +R+ E K L
Sbjct: 284 SFTLLREQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTL 343

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 344 RKLRHPSRSKKLKDYL 359

[199][TOP]
>UniRef100_B0BR67 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae
           serovar 3 str. JL03 RepID=B0BR67_ACTPJ
          Length = 619

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R  T EE+ ER+ +  ++ R V K ++  +S+ +     ++  +   + D  L+      
Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541

Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LRLA ++VL+ L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 602 RKLRHPSRSETLRSFL 617

[200][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
           RepID=A8MG96_ALKOO
          Length = 372

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI   + +S E+ R++ K +Q  +SL +     E+  +   + D          
Sbjct: 236 RDPKPEEIAAEMDLSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 295

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             +LL+  L +VLD+L P+E  V+R RFGLD    RTL E+    +++RE +R+ E KAL
Sbjct: 296 AFSLLKEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKAL 355

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ Y+
Sbjct: 356 RKLRHPSRSKKLKDYL 371

[201][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
           QYMF RepID=A6TSG9_ALKMQ
          Length = 372

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + + +  E+ R++ K +Q  +SL +     E+  +   + D     D+   
Sbjct: 236 REPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 290

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VLD+L P+E  V+R RFGLD    RTL E+    +++RE +R+ 
Sbjct: 291 PAEAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQI 350

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 351 EAKALRKLRHPSRSKKLKDYL 371

[202][TOP]
>UniRef100_A3N2C3 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae
           L20 RepID=A3N2C3_ACTP2
          Length = 619

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R  T EE+ ER+ +  ++ R V K ++  +S+ +     ++  +   + D  L+      
Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541

Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LRLA ++VL+ L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 602 RKLRHPSRSETLRSFL 617

[203][TOP]
>UniRef100_A1VMP0 RNA polymerase sigma factor n=1 Tax=Polaromonas naphthalenivorans CJ2
            RepID=A1VMP0_POLNA
          Length = 736

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568  PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
            P    + E++ I  E+ R + K ++  +S+ +     ++  +   ++DG           
Sbjct: 600  PDASILAEKMEIPEEKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGANTAPLEAAMQ 659

Query: 391  ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            A LR  + D+LDSL P+E  V+R RFG++   D TL E+    +++RE +R+ E KAL K
Sbjct: 660  AGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRK 719

Query: 211  LKLSARLDYLRRYV 170
            LK  +R D LR ++
Sbjct: 720  LKHPSRSDKLRSFI 733

[204][TOP]
>UniRef100_C9QCH3 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio orientalis CIP
           102891 RepID=C9QCH3_VIBOR
          Length = 618

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+   +  
Sbjct: 481 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 540

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               L++A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 541 TAGSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 600

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 601 RKLRHPSRSETLRSFL 616

[205][TOP]
>UniRef100_C9NN36 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio coralliilyticus
           ATCC BAA-450 RepID=C9NN36_9VIBR
          Length = 617

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+   +  
Sbjct: 480 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 539

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               L++A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 540 TSTSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 599

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 600 RKLRHPSRSETLRSFL 615

[206][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
          Length = 392

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           + PT EE+ E++ +  E+ + + + +Q  +SL +   + E+  +   V+D       +  
Sbjct: 256 KEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDAT 315

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  LD+VL +L  +E +V+R R+GLD    +TL E+    N++RE +R+ EVKAL
Sbjct: 316 TRILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKAL 375

Query: 217 MKLKLSARLDYLRRY 173
            KL+  +R   L  Y
Sbjct: 376 RKLRHPSRRKKLEDY 390

[207][TOP]
>UniRef100_C7MNW8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
           sigma factor, sigma-70 family n=1 Tax=Cryptobacterium
           curtum DSM 15641 RepID=C7MNW8_CRYCD
          Length = 422

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING--VVDDGGLDGDNR 401
           R PT EEI E + ++P+R R++ K SQ  +SL +  I  EE+   G  + DD  +   + 
Sbjct: 285 REPTPEEIAEEMDLTPDRVREIQKISQEPVSLETP-IGEEEDSQLGDFIEDDAAVVPPDA 343

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
              ++L+  L  VLD L  +E  VI  RFGL+    RTL E+     ++RE +R+ E K 
Sbjct: 344 ASFSMLQEQLTKVLDGLAERERKVISLRFGLEDGHPRTLEEVGREFGVTRERIRQIESKT 403

Query: 220 LMKLKLSARLDYLRRYV 170
           L KL+  +R   L+ Y+
Sbjct: 404 LAKLRHPSRSSKLKDYL 420

[208][TOP]
>UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM
           14469 RepID=C6LFQ8_9FIRM
          Length = 374

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
           R PT EE+ ER+++   R R+V K S+  +SL +     ++  +   + DD  L   +  
Sbjct: 238 REPTPEEVAERLNVPVSRVREVLKISRDPVSLDTPIGEEDDSHLGDFIEDDSALSPSDSA 297

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++LR  L   L+SL  +E  V++ RFGL     RTL E+    N++RE +R+ E KAL
Sbjct: 298 AFSMLREELGTALESLTDRERQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQIEAKAL 357

Query: 217 MKLKLSARLDYLRRYVV 167
            KL+  +R   L+ +++
Sbjct: 358 RKLRHPSRSKRLKDFLI 374

[209][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           W23144 RepID=C5QXG6_STAEP
          Length = 368

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367

[210][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           M23864:W1 RepID=C5QSV2_STAEP
          Length = 368

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367

[211][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
           RepID=C4WCC7_STAWA
          Length = 367

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 231 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 290

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 291 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 350

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 351 RKLRHPSRSKRLKDFM 366

[212][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
           RepID=C2M0X4_STAHO
          Length = 368

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367

[213][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
           RepID=B9CVA9_STACP
          Length = 368

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367

[214][TOP]
>UniRef100_B8KEK7 RNA polymerase sigma factor n=1 Tax=Vibrio parahaemolyticus 16
           RepID=B8KEK7_VIBPA
          Length = 620

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+   +  
Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               L++A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 543 TAGSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 603 RKLRHPSRSETLRSFL 618

[215][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
           RepID=B6FR93_9CLOT
          Length = 370

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + +  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 234 REPLPEEIAEELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VLD+L  +E  V+R RFG++    RTL E+    +++RE +R+ 
Sbjct: 289 PAEAAAATLLKEQLGEVLDTLTDREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 348

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 349 EAKALRKLRHPSRSRKLRDYL 369

[216][TOP]
>UniRef100_A7VCB7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. L2-50
           RepID=A7VCB7_9CLOT
          Length = 377

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + + I  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 241 REPQPEEIADVMDIPVERVREILKISQEPVSLETPIGEEEDSHLGDFIPD-----DNMPV 295

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VLD+L  +E  V+  RFGL+    RTL E+    N++RE +R+ 
Sbjct: 296 PADAAAFTLLKEQLVEVLDTLTEREKKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQI 355

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   LR Y+
Sbjct: 356 EAKALRKLRHPSRSRKLRDYI 376

[217][TOP]
>UniRef100_A7K4C7 RNA polymerase sigma factor n=3 Tax=Vibrio RepID=A7K4C7_9VIBR
          Length = 639

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 502 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 561

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L++A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 562 TATSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 621

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 622 RKLRHPSRSETLRSFL 637

[218][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
           RepID=RPSD2_BACSP
          Length = 377

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI   + +S E+ R++ K +Q  +SL +     ++  +   ++D   L   +  
Sbjct: 241 REPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAA 300

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 361 RKLRHPSRSKRLKDFL 376

[219][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
           RepID=RPOD_STAEQ
          Length = 368

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI E + + PE+ R++ K +Q  +SL +     ++  +   ++D      +   
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367

[220][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001693157
          Length = 375

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
           R PT EEI + + +S ++ R++ K +Q  +SL +     ++  +   ++D   L   +  
Sbjct: 239 REPTPEEIAKEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAA 298

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L+DVLD+L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374

[221][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
          Length = 370

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R PT EEI + + IS ++ R++ K +Q  +SL +     E+  +   V+D          
Sbjct: 234 REPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEA 293

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  LD+VL +L  +E  V+R RFGLD    RTL E+     ++RE +R+ E KAL
Sbjct: 294 SYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKAL 353

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 354 RKLRHPSRSKKLKDFL 369

[222][TOP]
>UniRef100_Q0VMT7 RNA polymerase sigma factor n=1 Tax=Alcanivorax borkumensis SK2
           RepID=Q0VMT7_ALCBS
          Length = 633

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EE+  R+ +  ++ R V K ++  +S+ +     E+  +   ++DG ++      
Sbjct: 494 REPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNMESPVDSA 553

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            +L L  A  DVL +L  +E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 554 TSLGLEEATRDVLANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 613

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R ++LR ++
Sbjct: 614 RKLRHPSRSEHLRSFL 629

[223][TOP]
>UniRef100_C4K493 RNA polymerase sigma factor n=1 Tax=Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum) RepID=C4K493_HAMD5
          Length = 610

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R P  EE+ ER+ +  E+ R V K ++  +S+ +     ++  +   ++D  L+   +  
Sbjct: 473 REPAPEELAERMLMPEEKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSA 532

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               LRLA +DVL  L  +E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 533 TSESLRLATNDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 592

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R D L+ ++
Sbjct: 593 RKLRHPSRSDVLKSFL 608

[224][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
           ISDg RepID=A9KI23_CLOPH
          Length = 372

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ + ++I  ER R++ K SQ  +SL +     E+  +   + D     DN   
Sbjct: 236 REPFPEEVAKEMNIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 290

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LL+  L +VL +L  +E  V+R RFGLD    RTL E+    N++RE +R+ 
Sbjct: 291 PAEAAAFTLLKEQLMEVLGTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 350

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E KAL KL+  +R   L+ Y+
Sbjct: 351 EAKALRKLRHPSRSRKLKDYL 371

[225][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
           SI RepID=A5D3U6_PELTS
          Length = 363

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P+ EEI + ++I+ ++ R++ K +Q  +SL +     E+  +   ++D        R 
Sbjct: 227 RDPSPEEIAKEMNITEDKVREILKIAQEPVSLETPIGEEEDSHLGDFIED-----HEARA 281

Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
           PA      LLR  LD+VL +L  +E  V+R RFGLD    RTL E+     ++RE +R+ 
Sbjct: 282 PAEEASFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 341

Query: 232 EVKALMKLKLSARLDYLRRYV 170
           E K L KL+  +R   L+ Y+
Sbjct: 342 EAKTLRKLRHPSRSKKLKDYL 362

[226][TOP]
>UniRef100_Q1K285 RNA polymerase sigma factor n=1 Tax=Desulfuromonas acetoxidans DSM
           684 RepID=Q1K285_DESAC
          Length = 583

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI ER+ +  E+ R V K ++  +SL +     E+  +   ++D G        
Sbjct: 445 REPIPEEIAERMDLPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKGAVSPLE-- 502

Query: 394 PALLRLALDD----VLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227
            A+++  L D    VL +L P+E  V+R RFG+  + D TL E+  + N++RE +R+ E 
Sbjct: 503 -AVIKGNLSDQTAEVLSTLSPREEKVLRMRFGIGERSDHTLEEVGQDFNVTRERIRQIEA 561

Query: 226 KALMKLKLSARLDYLRRYV 170
           KAL KL+  +R   LR +V
Sbjct: 562 KALRKLRHPSRAKRLRSFV 580

[227][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
           thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
          Length = 357

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EEI + + +S ++ R++ K +Q  +SL +     E+  +   + D          
Sbjct: 221 RDPLPEEIAKEMDMSVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              +L+  L DVLD+L P+E  V+R RFGLD    RTL E+    N++RE +R+ E KAL
Sbjct: 281 AFTMLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   L+ ++
Sbjct: 341 RKLRHPSRSKKLKDFL 356

[228][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
           RepID=C0GBZ7_9FIRM
          Length = 372

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  +EI   ++IS ER R++ K +Q  +SL +     ++  +   ++D  +       
Sbjct: 236 REPAPDEIAHVMNISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAA 295

Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  LDDVL++L P+E  V+  RFGL+    RTL E+     ++RE +R+ E KAL
Sbjct: 296 AFELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKAL 355

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R   L+ Y+
Sbjct: 356 RKLRHPMRSKRLKDYL 371

[229][TOP]
>UniRef100_B8KQ57 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3
           RepID=B8KQ57_9GAMM
          Length = 607

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG--DNR 401
           R PT EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  ++   D  
Sbjct: 468 REPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQTINSPIDAA 527

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
               L+  A  DVL  L  +E  V+R RFG+D   D TL E+    +++RE +R+ E KA
Sbjct: 528 TGQGLME-ATKDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 586

Query: 220 LMKLKLSARLDYLRRYV 170
           L KL+   R DYLR ++
Sbjct: 587 LRKLRHPTRSDYLRSFL 603

[230][TOP]
>UniRef100_B7RVL8 RNA polymerase sigma factor n=1 Tax=marine gamma proteobacterium
           HTCC2148 RepID=B7RVL8_9GAMM
          Length = 605

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
           R PT EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  +    +  
Sbjct: 468 REPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTISSPVDSA 527

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
               L+ A  DVL  L  +E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 528 TGQGLQEATKDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 587

Query: 217 MKLKLSARLDYLRRYV 170
            KL+   R DYLR ++
Sbjct: 588 RKLRHPTRSDYLRSFL 603

[231][TOP]
>UniRef100_B4WX76 RNA polymerase sigma factor n=1 Tax=Alcanivorax sp. DG881
           RepID=B4WX76_9GAMM
          Length = 633

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PT EE+  R+ +  ++ R V K ++  +S+ +     E+  +   ++DG ++      
Sbjct: 494 REPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNMESPVDSA 553

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            +L L  A  DVL +L  +E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 554 TSLGLEEATRDVLANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 613

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R ++LR ++
Sbjct: 614 RKLRHPSRSEHLRSFL 629

[232][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
           caldarium RepID=Q39515_CYACA
          Length = 591

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING---VVDDGGLDGDN 404
           RPP+EEEI E V I   +YR V + S+ I+SL +   + ++    G   +  +   + + 
Sbjct: 453 RPPSEEEICESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENC 512

Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224
            R    LR +++ VL  L  +E  VIR RFGL     RTL E+ S  N++RE +R+ E K
Sbjct: 513 SRDT--LRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESK 570

Query: 223 ALMKLKLSARLDYLRRYV 170
           AL KL+  A  ++L  Y+
Sbjct: 571 ALKKLRTPAENNFLDEYL 588

[233][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MUC7_9CHLO
          Length = 587

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING-VVDDGGLDGDNRR 398
           R PT EEI E + ++ E+   + KAS   +SL       +   +   +VDD     D+  
Sbjct: 434 RDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDAT 493

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LL+  L++VL++L P+E  V+R R+G+D    +TL EI +  +++RE +R+ E KAL
Sbjct: 494 GKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKAL 553

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R   LR Y+
Sbjct: 554 RKLRQPSRNGILREYL 569

[234][TOP]
>UniRef100_Q82XM8 RNA polymerase sigma factor n=1 Tax=Nitrosomonas europaea
            RepID=Q82XM8_NITEU
          Length = 751

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
 Frame = -2

Query: 568  PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRRQP 392
            P    + E++ +  E+ R + K S+  +S+ +     E+  +   ++D   ++  +    
Sbjct: 613  PEPAVLAEKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDASTMEPADAAVY 672

Query: 391  ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
            A LR    DVLDSL P+E  V+R RFG++   D TL E+    +++RE +R+ E KAL K
Sbjct: 673  AGLRTVTKDVLDSLTPREAKVLRMRFGIEMNTDHTLEEVGRQFDVTRERIRQIEAKALRK 732

Query: 211  LKLSARLDYLRRYV 170
            L+  AR D LR ++
Sbjct: 733  LRHPARSDRLRSFL 746

[235][TOP]
>UniRef100_Q7VN82 RNA polymerase sigma factor n=1 Tax=Haemophilus ducreyi
           RepID=Q7VN82_HAEDU
          Length = 613

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R  T EE+ ER+ +  ++ R V K ++  +S+ +  I  ++  +   + D  L+      
Sbjct: 477 REATPEELAERMGMPEDKIRKVLKIAKEPISMETP-IGDDDSHLGDFIQDENLELPLDSA 535

Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  LRLA ++VL+ L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 536 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 596 RKLRHPSRSETLRSFL 611

[236][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9313 RepID=Q7V698_PROMM
          Length = 461

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 46/135 (34%), Positives = 74/135 (54%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI E + ++ E+ R + K++Q  +SL +     E+  +   ++    + +    
Sbjct: 326 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTENPEQDVA 385

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL +L P+E  V+R R+GLD    +TL EI     ++RE +R+ E KAL 
Sbjct: 386 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 445

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 446 KLRHPNRNGVLKEYI 460

[237][TOP]
>UniRef100_Q7MP03 RNA polymerase sigma factor n=2 Tax=Vibrio vulnificus
           RepID=Q7MP03_VIBVY
          Length = 643

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 506 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 565

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L+ A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 566 TATSLKAATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 625

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 626 RKLRHPSRSETLRSFL 641

[238][TOP]
>UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359
           RepID=B9K8D5_THENN
          Length = 392

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392
           P+ EE+ + +   PE+ +++ +A++  +SL S     E+  I   V D  +    +    
Sbjct: 251 PSVEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADESVPSPKKEAMR 310

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
            L+R  L+ VL +L P+E +V+R R+G LDGK  +TL E+    N++RE +R+ EVKAL 
Sbjct: 311 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 369

Query: 214 KLKLSARLDYLR 179
           KL+  +R  YL+
Sbjct: 370 KLRHPSRSKYLK 381

[239][TOP]
>UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1
          Length = 407

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392
           P+ EE+ + +   PE+ +++ +A++  +SL S     E+  I   V D  +    +    
Sbjct: 266 PSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMR 325

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
            L+R  L+ VL +L P+E +V+R R+G LDGK  +TL E+    N++RE +R+ EVKAL 
Sbjct: 326 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 384

Query: 214 KLKLSARLDYLR 179
           KL+  +R  YL+
Sbjct: 385 KLRHPSRSKYLK 396

[240][TOP]
>UniRef100_A5F9E3 RNA polymerase sigma factor n=1 Tax=Vibrio cholerae O395
           RepID=A5F9E3_VIBC3
          Length = 621

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 484 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 543

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L+ A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 544 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 604 RKLRHPSRSEVLRSFL 619

[241][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9303 RepID=A2C7M0_PROM3
          Length = 444

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 46/135 (34%), Positives = 74/135 (54%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R PTEEEI E + ++ E+ R + K++Q  +SL +     E+  +   ++    + +    
Sbjct: 309 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTENPEQDVA 368

Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
             LLR  L+ VL +L P+E  V+R R+GLD    +TL EI     ++RE +R+ E KAL 
Sbjct: 369 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 428

Query: 214 KLKLSARLDYLRRYV 170
           KL+   R   L+ Y+
Sbjct: 429 KLRHPNRNGVLKEYI 443

[242][TOP]
>UniRef100_C9Q2J8 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio sp. RC341
           RepID=C9Q2J8_9VIBR
          Length = 628

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 491 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 550

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L+ A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 551 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 610

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 611 RKLRHPSRSEVLRSFL 626

[243][TOP]
>UniRef100_C7IAE0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Thermotoga
           naphthophila RKU-10 RepID=C7IAE0_9THEM
          Length = 407

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
 Frame = -2

Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392
           P+ EE+ + +   PE+ +++ +A++  +SL S     E+  I   V D  +    +    
Sbjct: 266 PSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMR 325

Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
            L+R  L+ VL +L P+E +V+R R+G LDGK  +TL E+    N++RE +R+ EVKAL 
Sbjct: 326 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 384

Query: 214 KLKLSARLDYLR 179
           KL+  +R  YL+
Sbjct: 385 KLRHPSRSKYLK 396

[244][TOP]
>UniRef100_C7HUH1 RNA polymerase sigma factor RpoD n=1 Tax=Anaerococcus vaginalis
           ATCC 51170 RepID=C7HUH1_9FIRM
          Length = 614

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
           R P+ EEI E++ I  E+ +++ K +Q  +SL +     E+  +   + DD  ++ D+  
Sbjct: 479 RDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAA 538

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++LR  L+DVL  L  +E  V++ RFGL     RTL E+    +++RE +R+ E KAL
Sbjct: 539 NYSMLRDQLNDVLSCLGAREKRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKAL 598

Query: 217 MKLKLSARLDYLRRYV 170
            KLK   + + L+ ++
Sbjct: 599 RKLKSPNKSELLKDFL 614

[245][TOP]
>UniRef100_C2HU05 RNA polymerase sigma factor n=1 Tax=Vibrio cholerae bv. albensis
           VL426 RepID=C2HU05_VIBCH
          Length = 642

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 505 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 564

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L+ A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 565 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 624

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 625 RKLRHPSRSEVLRSFL 640

[246][TOP]
>UniRef100_C3NW56 RNA polymerase sigma factor n=17 Tax=Vibrio cholerae
           RepID=C3NW56_VIBCJ
          Length = 642

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
           R P  EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  L+      
Sbjct: 505 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 564

Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
            A  L+ A  DVL  L P+E  V+R RFG+D   D TL E+    +++RE +R+ E KAL
Sbjct: 565 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 624

Query: 217 MKLKLSARLDYLRRYV 170
            KL+  +R + LR ++
Sbjct: 625 RKLRHPSRSEVLRSFL 640

[247][TOP]
>UniRef100_B8KVX1 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR51-B
           RepID=B8KVX1_9GAMM
          Length = 603

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG--DNR 401
           R PT EE+ ER+ +  ++ R V K ++  +S+ +     E+  +   ++D  +    D+ 
Sbjct: 466 REPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDVTIASPVDSA 525

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
            +  L   A  DVL  L  +E  V+R RFG+D   D TL E+    +++RE +R+ E KA
Sbjct: 526 TEEGLTE-ATTDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 584

Query: 220 LMKLKLSARLDYLRRYV 170
           L KL+   R DYLR ++
Sbjct: 585 LRKLRHPTRSDYLRSFL 601

[248][TOP]
>UniRef100_B6WAP8 RNA polymerase sigma factor n=1 Tax=Anaerococcus hydrogenalis DSM
           7454 RepID=B6WAP8_9FIRM
          Length = 617

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
           R P+ EEI E++ I  E+ +++ K +Q  +SL +     E+  +   + DD  ++ D+  
Sbjct: 482 RDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAA 541

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
             ++LR  L+DVL  L  +E  V++ RFGL     RTL E+    +++RE +R+ E KAL
Sbjct: 542 NYSMLRDQLNDVLSCLGAREKRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKAL 601

Query: 217 MKLKLSARLDYLRRYV 170
            KLK   + + L+ ++
Sbjct: 602 RKLKSPNKSELLKDFL 617

[249][TOP]
>UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM
          Length = 417

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
 Frame = -2

Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNR 401
           R P+ EEI E++  ++PE+ R++ K S   +SL +     ++  +   ++D G +  D+ 
Sbjct: 279 REPSAEEIAEKMDGMTPEKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGAMSPDDY 338

Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
               LL+  L++VL  L  +E  V+R RFGLD    RTL E+    +++RE +R+ E KA
Sbjct: 339 AANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKA 398

Query: 220 LMKLKLSARLDYLRRYV 170
           L KLK  +R   L+ ++
Sbjct: 399 LRKLKHPSRSKRLKDFL 415

[250][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
           RepID=A8UQQ5_9AQUI
          Length = 571

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
 Frame = -2

Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR- 398
           R PT EEI + + ++P++ R V +++Q  +SL +     E+ F+   ++D  +       
Sbjct: 435 REPTPEEIAKHLGMTPDKVRKVLRSAQEPISLETPIGDDEDTFLKDFIEDKSVPNPEEYV 494

Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
              LLR  L+ VL++L  KE  ++R R+GL    + TL ++    N++RE +R+ E KA+
Sbjct: 495 SRKLLREQLERVLETLSDKEREILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAI 554

Query: 217 MKLKLSARLDYLRRY 173
            KL+  +R  YL+ +
Sbjct: 555 RKLRHPSRAKYLKDF 569