[UP]
[1][TOP]
>UniRef100_Q9ZNX9 AT5G24120 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZNX9_ARATH
Length = 517
Score = 213 bits (541), Expect = 1e-53
Identities = 102/136 (75%), Positives = 123/136 (90%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
RPPTE+E++ER+ I+PERYR+V +A++P+LSL+S+H T+EEFING+ D G+ +N RQ
Sbjct: 382 RPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDGVGANNSRQ 441
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
PALLRLALDDVLDSLKPKE+LVIRQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKALM
Sbjct: 442 PALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALM 501
Query: 214 KLKLSARLDYLRRYVV 167
KLK AR+DYLR+Y+V
Sbjct: 502 KLKHQARVDYLRQYIV 517
[2][TOP]
>UniRef100_B9RIL8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9RIL8_RICCO
Length = 501
Score = 212 bits (540), Expect = 1e-53
Identities = 110/137 (80%), Positives = 121/137 (88%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
QR PTEEEIIERV IS ERY +V +A++P LSLH+RH T+EEFING+ D G GDNRR
Sbjct: 367 QRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQEEFINGITDIDG--GDNRR 424
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
QPALLRLALDDVLDSLKPKE+LVIRQR+GLDGKGDRTLGEIA NLNISREMVRK+EVKAL
Sbjct: 425 QPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKAL 484
Query: 217 MKLKLSARLDYLRRYVV 167
MKLK AR+DYLRRYVV
Sbjct: 485 MKLKHPARVDYLRRYVV 501
[3][TOP]
>UniRef100_B9ND00 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9ND00_POPTR
Length = 512
Score = 211 bits (536), Expect = 4e-53
Identities = 107/137 (78%), Positives = 121/137 (88%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R P E+EIIE+V ISPERY +VT+AS+P+LSLHSRH TT+EEFI G+ D G GD+RR
Sbjct: 378 KRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEEFIGGIADVDG--GDDRR 435
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
Q ALLRLALDDVLDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKAL
Sbjct: 436 QSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKAL 495
Query: 217 MKLKLSARLDYLRRYVV 167
MKLK R+DYLRRYVV
Sbjct: 496 MKLKHPTRVDYLRRYVV 512
[4][TOP]
>UniRef100_A7QTV0 Chromosome undetermined scaffold_171, whole genome shotgun sequence
n=1 Tax=Vitis vinifera RepID=A7QTV0_VITVI
Length = 518
Score = 206 bits (523), Expect = 1e-51
Identities = 103/136 (75%), Positives = 120/136 (88%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
QR PTEEEIIE+V ISPERY +V +AS+ +LSLH+RH TT+EE+ING+ D G+ GD R
Sbjct: 382 QRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRGR 441
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
Q ALLRLALDDVLDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NL+ISREMVRKHEVKAL
Sbjct: 442 QLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKAL 501
Query: 217 MKLKLSARLDYLRRYV 170
MKLK AR+DYLR+Y+
Sbjct: 502 MKLKHPARVDYLRQYI 517
[5][TOP]
>UniRef100_B9N985 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N985_POPTR
Length = 512
Score = 199 bits (507), Expect = 1e-49
Identities = 105/136 (77%), Positives = 116/136 (85%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEIIE+V IS ERY +V +AS+P+LSLHSRH TT+EE I+GV D G GD+RRQ
Sbjct: 379 RKPTGEEIIEKVGISIERYHEVMRASKPVLSLHSRHKTTQEELISGVADVNG--GDDRRQ 436
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
ALLRLALDDVLDSLKPKE+LV+RQRFGLDGKGDRTLGEIA NLNISREMVRKHE KALM
Sbjct: 437 SALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEAKALM 496
Query: 214 KLKLSARLDYLRRYVV 167
KLK R+DYL RYVV
Sbjct: 497 KLKHPTRVDYLCRYVV 512
[6][TOP]
>UniRef100_Q84JN3 Os05g0586600 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84JN3_ORYSJ
Length = 500
Score = 172 bits (436), Expect = 2e-41
Identities = 85/135 (62%), Positives = 107/135 (79%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEE++++V +SP RYRDV + ++P SLH+R+ T+EE IN V DD + D
Sbjct: 366 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 425
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM
Sbjct: 426 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 485
Query: 214 KLKLSARLDYLRRYV 170
KLK R++YLRRY+
Sbjct: 486 KLKHPTRVEYLRRYM 500
[7][TOP]
>UniRef100_B9FIR8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9FIR8_ORYSJ
Length = 457
Score = 172 bits (436), Expect = 2e-41
Identities = 85/135 (62%), Positives = 107/135 (79%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEE++++V +SP RYRDV + ++P SLH+R+ T+EE IN V DD + D
Sbjct: 323 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 382
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM
Sbjct: 383 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 442
Query: 214 KLKLSARLDYLRRYV 170
KLK R++YLRRY+
Sbjct: 443 KLKHPTRVEYLRRYM 457
[8][TOP]
>UniRef100_A2Y810 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2Y810_ORYSI
Length = 500
Score = 172 bits (436), Expect = 2e-41
Identities = 85/135 (62%), Positives = 107/135 (79%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEE++++V +SP RYRDV + ++P SLH+R+ T+EE IN V DD + D
Sbjct: 366 RAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDTSSH 425
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLRLA+DD+LDSLKPKE++VIRQRFGLDG+G RTL EIA NLNISREMVRK+E+KALM
Sbjct: 426 NTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALM 485
Query: 214 KLKLSARLDYLRRYV 170
KLK R++YLRRY+
Sbjct: 486 KLKHPTRVEYLRRYM 500
[9][TOP]
>UniRef100_C5YWL3 Putative uncharacterized protein Sb09g030110 n=1 Tax=Sorghum
bicolor RepID=C5YWL3_SORBI
Length = 501
Score = 167 bits (423), Expect = 5e-40
Identities = 86/136 (63%), Positives = 107/136 (78%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
RP T+EE+ +V ISP+RYRDV + ++P SLH+R+ T+EE IN V DD + D R
Sbjct: 366 RPATDEEVRRKVGISPQRYRDVLRMTRPTYSLHARNRVTQEELINEVTDDDAIGVDAGGR 425
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLRLA+DD+LDSLKPKE+LVIRQRFGLDG+G RTL EIA NL+ISREMVRK+E+KAL
Sbjct: 426 HNTLLRLAIDDLLDSLKPKESLVIRQRFGLDGRGKRTLSEIAGNLSISREMVRKYELKAL 485
Query: 217 MKLKLSARLDYLRRYV 170
MKLK R++YLRRY+
Sbjct: 486 MKLKHPTRVEYLRRYM 501
[10][TOP]
>UniRef100_A9SLV0 Plastid sigma factor SIG5 n=2 Tax=Physcomitrella patens
RepID=A9SLV0_PHYPA
Length = 632
Score = 118 bits (295), Expect = 4e-25
Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSR-HITTEEEFINGVVDDGGLDGDNRR 398
R PT +EI + + I+ +R+RD+ + + SLH IT E+ N V ++ LD
Sbjct: 497 RQPTNDEIRKHLGITADRFRDILRTNMRTSSLHEHDRITGREKVENLVSEEDALD-TLAG 555
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++++ LDDVLDSL+PKENLV+RQRFGLDGKG R+L E+ LN+SREMVR++E++ +
Sbjct: 556 GTSMVQYGLDDVLDSLRPKENLVLRQRFGLDGKGQRSLSEVGLILNLSREMVRRYELRGI 615
Query: 217 MKLKLSARLDYLRRYV 170
+KL+ R++YLR Y+
Sbjct: 616 LKLQHPTRVEYLRNYL 631
[11][TOP]
>UniRef100_B9I544 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I544_POPTR
Length = 97
Score = 115 bits (288), Expect = 2e-24
Identities = 57/65 (87%), Positives = 61/65 (93%)
Frame = -2
Query: 361 LDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSARLDYL 182
LDSLKPKE+LV+RQR+GLDGKGDRTLGEIA NLNISREMVRKHEVKALMKLK R+DYL
Sbjct: 33 LDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYL 92
Query: 181 RRYVV 167
RRYVV
Sbjct: 93 RRYVV 97
[12][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 86.7 bits (213), Expect = 1e-15
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI E++ ISPE+ R++ K +Q +SL + E+ + ++D
Sbjct: 233 REPTPEEIAEKMGISPEKVREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEA 292
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
ALLR L++VL SL P+E V+R RFGLD RTL E+ ++RE +R+ E K L
Sbjct: 293 SYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 352
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 353 RKLRHPSRSKKLKDYL 368
[13][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 85.5 bits (210), Expect = 3e-15
Identities = 50/135 (37%), Positives = 78/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 254 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 313
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VLDSL P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 314 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 373
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 374 KLRHPNRNSVLKEYI 388
[14][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 85.5 bits (210), Expect = 3e-15
Identities = 50/135 (37%), Positives = 78/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 256 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 315
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VLDSL P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 316 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 376 KLRHPNRNSVLKEYI 390
[15][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 85.5 bits (210), Expect = 3e-15
Identities = 49/136 (36%), Positives = 80/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI E++ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 289 RRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 348
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 349 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 408
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 409 RKLRHPNRNSILKEYI 424
[16][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 85.5 bits (210), Expect = 3e-15
Identities = 50/135 (37%), Positives = 78/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 255 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 314
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VLDSL P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 315 KNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 374
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 375 KLRHPNRNSVLKEYI 389
[17][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 85.1 bits (209), Expect = 4e-15
Identities = 49/136 (36%), Positives = 80/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G + ++
Sbjct: 243 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGENPEDEV 302
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 303 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 362
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 363 RKLRHPNRNSILKEYI 378
[18][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 85.1 bits (209), Expect = 4e-15
Identities = 49/135 (36%), Positives = 79/135 (58%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI +R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 245 RKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDQVS 304
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 305 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 364
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 365 KLRHPNRNSILKEYI 379
[19][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 84.7 bits (208), Expect = 5e-15
Identities = 49/135 (36%), Positives = 80/135 (59%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI ER+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 240 RKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDQVS 299
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
+LLR L++VLD+L +E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 300 KSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 359
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 360 KLRHPNRNSILKEYI 374
[20][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 84.7 bits (208), Expect = 5e-15
Identities = 49/135 (36%), Positives = 78/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 252 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 311
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 312 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 371
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 372 KLRHPNRNSILKEYI 386
[21][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 84.7 bits (208), Expect = 5e-15
Identities = 49/135 (36%), Positives = 78/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 256 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 315
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 316 KNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 375
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 376 KLRHPNRNSILKEYI 390
[22][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 84.3 bits (207), Expect = 6e-15
Identities = 49/136 (36%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 240 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 299
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 300 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 359
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 360 RKLRHPNRNSILKEYI 375
[23][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 84.3 bits (207), Expect = 6e-15
Identities = 49/136 (36%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 280 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415
[24][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 84.3 bits (207), Expect = 6e-15
Identities = 48/135 (35%), Positives = 79/135 (58%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 236 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 295
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
+LLR L+ VLD+L P+E V++ R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 296 KSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 355
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 356 KLRHPNRNSVLKEYI 370
[25][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 84.3 bits (207), Expect = 6e-15
Identities = 49/136 (36%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 278 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 337
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 338 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 397
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 398 RKLRHPNRNSILKEYI 413
[26][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 84.3 bits (207), Expect = 6e-15
Identities = 49/136 (36%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 241 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 300
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 301 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 360
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 361 RKLRHPNRNSILKEYI 376
[27][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 84.3 bits (207), Expect = 6e-15
Identities = 49/136 (36%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 280 RRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415
[28][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 84.3 bits (207), Expect = 6e-15
Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401
R PTEEEI E++ +S E+ R V +++QP LSL R + +++ ++ ++ +
Sbjct: 306 RSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE-RPLKNDDDASQLSDFIEADQESPEEH 364
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
+ ++LR L++V++SL P+E V+R R+GLD +TL EI +++RE VR+ E KA
Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424
Query: 220 LMKLKLSARLDYLRRYVV 167
+ KL+ R LR YV+
Sbjct: 425 IRKLRQPYRSSILRDYVL 442
[29][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 84.3 bits (207), Expect = 6e-15
Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 2/138 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401
R PTEEEI E++ +S E+ R V +++QP LSL R + +++ ++ ++ +
Sbjct: 306 RSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE-RPLKNDDDASQLSDFIEADQESPEEH 364
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
+ ++LR L++V++SL P+E V+R R+GLD +TL EI +++RE VR+ E KA
Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424
Query: 220 LMKLKLSARLDYLRRYVV 167
+ KL+ R LR YV+
Sbjct: 425 IRKLRQPYRSSILRDYVL 442
[30][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 84.0 bits (206), Expect = 8e-15
Identities = 50/137 (36%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEF--INGVVDDGGLDGDNR 401
R PTEEEI +R+ +S E+ R+V +++QP LSL R + +++ ++ ++ +
Sbjct: 289 RSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLE-RPLKNDDDTSQLSDFIEADQESPEEH 347
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
+ ++LR L++V++SL P+E V+R R+GLD +TL EI +++RE VR+ E KA
Sbjct: 348 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 407
Query: 220 LMKLKLSARLDYLRRYV 170
+ KL+ R LR YV
Sbjct: 408 IRKLRQPYRSSILRDYV 424
[31][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 83.6 bits (205), Expect = 1e-14
Identities = 49/135 (36%), Positives = 77/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ I+ E+ R + K++Q +SL + E+ + ++ G + R
Sbjct: 269 RRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESEGETPEERVA 328
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL++L P+E V++ R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 329 KVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 389 KLRHPNRNSVLKEYI 403
[32][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/136 (35%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI ++ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415
[33][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/135 (35%), Positives = 77/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 269 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDEVS 328
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
+LLR L+ VL +L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 329 KSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 388
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 389 KLRHPNRNSVLKEYI 403
[34][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/136 (35%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI ++ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415
[35][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/136 (35%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI ++ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415
[36][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/136 (35%), Positives = 79/136 (58%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR 398
+R PTEEEI ++ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 280 RRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEV 339
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L++VLD+L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 340 SKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKAL 399
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 400 RKLRHPNRNSILKEYI 415
[37][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 82.4 bits (202), Expect = 2e-14
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
R PT EEI + + IS +R R++ K +Q +SL + E+ + + DD L
Sbjct: 230 REPTPEEIAKEMEISVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPAEAA 289
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+L+ L +VLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 290 AFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 349
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 350 RKLRHPSRSKKLKDYL 365
[38][TOP]
>UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195
RepID=Q3Z904_DEHE1
Length = 520
Score = 81.6 bits (200), Expect = 4e-14
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R PT +EI + + PE+ R++ K SQ +SL S E+ + ++D L +
Sbjct: 384 REPTPDEIAVEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ +D VL SL P+E V++ RFGL+ RTL E+ N++RE +R+ E KAL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 504 RKLRHPSRSRKLKDYL 519
[39][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 81.6 bits (200), Expect = 4e-14
Identities = 48/135 (35%), Positives = 77/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ I+ E+ R + K++Q +SL + E+ + ++ G ++R
Sbjct: 268 RKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDRVA 327
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL++L +E V++ R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 328 KVLLREDLESVLETLTARERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 387
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 388 KLRHPNRNSVLKEYI 402
[40][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 81.3 bits (199), Expect = 5e-14
Identities = 48/135 (35%), Positives = 78/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 265 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDKVA 324
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL++L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 325 KNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 384
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 385 KLRHPNRNSVLKEYI 399
[41][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 81.3 bits (199), Expect = 5e-14
Identities = 51/141 (36%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + I ER R++ K +Q +SL + E+ + ++D ++ +
Sbjct: 225 REPTPEEIAHEMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIED-----EDAQA 279
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LLR L++VL+SL P+E V+R RFGLD RTL E+ ++RE +R+
Sbjct: 280 PAEAASFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQI 339
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 340 EAKALRKLRHPSRSKKLKDYL 360
[42][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 81.3 bits (199), Expect = 5e-14
Identities = 48/135 (35%), Positives = 76/135 (56%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI + ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 251 RKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDEVS 310
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL+SL P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 311 KNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 370
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 371 KLRHPNRNSILKEYI 385
[43][TOP]
>UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides
RepID=A5FRQ7_DEHSB
Length = 520
Score = 81.3 bits (199), Expect = 5e-14
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R PT +EI + + PE+ R++ K SQ +SL S E+ + ++D L +
Sbjct: 384 REPTPDEIALEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ +D VL SL P+E V++ RFGL+ RTL E+ N++RE +R+ E KAL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 504 RKLRHPSRSRKLKDYL 519
[44][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 81.3 bits (199), Expect = 5e-14
Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R PT EEI + + I +R R++ K +Q +SL + E+ + ++D +
Sbjct: 237 REPTPEEIAKEMEIGVDRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPADAA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L P+E V+R RFGLD RTL E+ N ++RE +R+ E KAL
Sbjct: 297 SFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSRKLKDFL 372
[45][TOP]
>UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS
RepID=A8CRQ1_9CHLR
Length = 520
Score = 81.3 bits (199), Expect = 5e-14
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R PT +EI + + PE+ R++ K SQ +SL S E+ + ++D L +
Sbjct: 384 REPTPDEIALEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAA 443
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ +D VL SL P+E V++ RFGL+ RTL E+ N++RE +R+ E KAL
Sbjct: 444 SRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKAL 503
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 504 RKLRHPSRSRKLKDYL 519
[46][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M18 RepID=Q8P1I9_STRP8
Length = 369
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[47][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M3 RepID=Q8K811_STRP3
Length = 369
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[48][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 80.9 bits (198), Expect = 7e-14
Identities = 47/135 (34%), Positives = 78/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI +R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 283 RKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 342
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL +L P+E V++ R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 343 KHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 402
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 403 KLRHPNRNSVLKEYI 417
[49][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
Length = 369
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[50][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
zooepidemicus H70 RepID=C0MGY0_STRS7
Length = 369
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[51][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
4047 RepID=C0M883_STRE4
Length = 369
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[52][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
RepID=B9DRV6_STRU0
Length = 369
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[53][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
zooepidemicus MGCS10565 RepID=B4U2H7_STREM
Length = 369
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[54][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
RepID=A2RFA3_STRPG
Length = 369
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[55][TOP]
>UniRef100_A4VWA5 RNA polymerase sigma factor n=6 Tax=Streptococcus suis
RepID=A4VWA5_STRSY
Length = 372
Score = 80.9 bits (198), Expect = 7e-14
Identities = 46/134 (34%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++PE+ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 237 PTPEQIAERMDMTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 296
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 297 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 356
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 357 LRHPSRSKPLRDFI 370
[56][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 80.5 bits (197), Expect = 9e-14
Identities = 48/135 (35%), Positives = 76/135 (56%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 264 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVA 323
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL +L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 384 KLRHPNRNSILKEYI 398
[57][TOP]
>UniRef100_C1DV68 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV68_SULAA
Length = 586
Score = 80.5 bits (197), Expect = 9e-14
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398
R PT EEI ++V + E+ + + + SQ +SL + T EE + ++D L +
Sbjct: 448 REPTPEEIAKKVGMPAEKVKKILRTSQEPISLETPIGTDEETHLGDFIEDKSVLSPEAHM 507
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LR+ LD+VL +L +E V+R RFGL+ + TL ++ ++RE +R+ E KAL
Sbjct: 508 LKNALRMQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKAL 567
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R YL+ ++
Sbjct: 568 RKLRHPHRAKYLKPFI 583
[58][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
Length = 369
Score = 80.5 bits (197), Expect = 9e-14
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRHPSRSKQLRDFI 367
[59][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 80.5 bits (197), Expect = 9e-14
Identities = 48/135 (35%), Positives = 76/135 (56%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G ++
Sbjct: 264 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGETPEDEVA 323
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL +L P+E V+R R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 324 KNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 383
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 384 KLRHPNRNSILKEYI 398
[60][TOP]
>UniRef100_Q7VQR2 RNA polymerase sigma factor n=1 Tax=Candidatus Blochmannia
floridanus RepID=Q7VQR2_BLOFL
Length = 617
Score = 80.1 bits (196), Expect = 1e-13
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLD-------G 410
PT EE+ ER+ +S ++ R V K ++ +S+ + E+ + ++D LD
Sbjct: 481 PTPEELAERMFMSEDKIRKVLKIAKEPVSMETPIGDDEDSHLGDFIEDTNLDLPLDSATS 540
Query: 409 DNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHE 230
DN LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E
Sbjct: 541 DN------LRAATNDVLSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 594
Query: 229 VKALMKLKLSARLDYLRRYV 170
KAL KL+ +R + L+ ++
Sbjct: 595 AKALRKLRHPSRSEILKSFL 614
[61][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 80.1 bits (196), Expect = 1e-13
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R P EEI E++ ++PE+ R++ K +Q +SL + ++ + ++D L+ +
Sbjct: 240 REPMPEEIAEKMDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAA 299
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 300 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 359
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 360 RKLRHPSRSKRLKDFL 375
[62][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 80.1 bits (196), Expect = 1e-13
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R PT EEI E + ISP++ R++ K +Q +SL + ++ + ++D +
Sbjct: 241 REPTPEEIAEEMDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHA 300
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 301 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 361 RKLRHPSRSKRLKDFL 376
[63][TOP]
>UniRef100_UPI0001BB55B2 RNA polymerase sigma factor RpoD n=1 Tax=Streptococcus sp.
2_1_36FAA RepID=UPI0001BB55B2
Length = 370
Score = 79.7 bits (195), Expect = 1e-13
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 355 LRHPSRSKPLRDFI 368
[64][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 79.7 bits (195), Expect = 1e-13
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI ++ IS ER R++ K +Q +SL + E+ + + D +
Sbjct: 231 REPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAA 290
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L++VL++L P+E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 291 SFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKAL 350
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 351 RKLRHPSRSKKLKDYL 366
[65][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 79.7 bits (195), Expect = 1e-13
Identities = 47/135 (34%), Positives = 77/135 (57%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI R+ ++ E+ R + K++Q +SL + E+ + ++ G +++
Sbjct: 243 RKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGETPEDQVS 302
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL +L P+E V++ R+GLD +TL EI N++RE +R+ E KAL
Sbjct: 303 KNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALR 362
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 363 KLRHPNRNSVLKEYI 377
[66][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 79.7 bits (195), Expect = 1e-13
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI ++ IS ER R++ K +Q +SL + E+ + + D +
Sbjct: 236 REPTPEEIAVQMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAA 295
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L++VL++L P+E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 296 SFILLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKAL 355
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 356 RKLRHPSRSKKLKDYL 371
[67][TOP]
>UniRef100_A8AXP5 RNA polymerase sigma factor n=1 Tax=Streptococcus gordonii str.
Challis RepID=A8AXP5_STRGC
Length = 370
Score = 79.7 bits (195), Expect = 1e-13
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 355 LRHPSRSKPLRDFI 368
[68][TOP]
>UniRef100_A3CM49 RNA polymerase sigma factor n=1 Tax=Streptococcus sanguinis SK36
RepID=A3CM49_STRSV
Length = 370
Score = 79.7 bits (195), Expect = 1e-13
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 235 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 294
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 295 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 354
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 355 LRHPSRSKPLRDFI 368
[69][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 79.7 bits (195), Expect = 1e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA 298
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[70][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 79.7 bits (195), Expect = 1e-13
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI E + I ER R++ K SQ +SL + E+ + + D +N
Sbjct: 227 REPSPEEIAEEMDIPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----ENVPV 281
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ LD+VL +L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 282 PADAAAFTLLKEQLDEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQI 341
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 342 EAKALRKLRHPSRSRKLKDYL 362
[71][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 79.7 bits (195), Expect = 1e-13
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + + ER R++ K SQ +SL + E+ + + D DN
Sbjct: 246 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 300
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ LD+VLD+L +E V+R RFG+D RTL E+ +++RE +R+
Sbjct: 301 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQI 360
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 361 EAKALRKLRHPSRSRKLRDYL 381
[72][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 79.3 bits (194), Expect = 2e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI E + + P++ RD+ K +Q +SL + ++ + ++D + +
Sbjct: 244 REPTPEEIGEEMELGPDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHA 303
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 304 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 363
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 364 RKLRHPSRSKRLKDFL 379
[73][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
18311 RepID=Q5M3E3_STRT2
Length = 369
Score = 79.3 bits (194), Expect = 2e-13
Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R L+ ++
Sbjct: 354 LRHPSRSKQLKDFI 367
[74][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
RepID=Q03JL2_STRTD
Length = 369
Score = 79.3 bits (194), Expect = 2e-13
Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R L+ ++
Sbjct: 354 LRHPSRSKQLKDFI 367
[75][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 79.3 bits (194), Expect = 2e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 238 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 297
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 298 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 358 RKLRHPSRSKRLKDFL 373
[76][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 79.3 bits (194), Expect = 2e-13
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + +++ E+ R++ K SQ +SL + E+ + + D +
Sbjct: 222 REPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAA 281
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 282 AFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 341
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 342 RKLRHPSRSKKLKDYL 357
[77][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 79.3 bits (194), Expect = 2e-13
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + +++ E+ R++ K SQ +SL + E+ + + D +
Sbjct: 222 REPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAA 281
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 282 AFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 341
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 342 RKLRHPSRSKKLKDYL 357
[78][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 79.3 bits (194), Expect = 2e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 241 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 300
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 301 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 361 RKLRHPSRSKRLKDFL 376
[79][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
RepID=C2LRD4_STRSL
Length = 369
Score = 79.3 bits (194), Expect = 2e-13
Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R L+ ++
Sbjct: 354 LRHPSRSKQLKDFI 367
[80][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 79.3 bits (194), Expect = 2e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPTPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHA 298
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[81][TOP]
>UniRef100_B2DVB6 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae
CDC0288-04 RepID=B2DVB6_STRPN
Length = 369
Score = 79.3 bits (194), Expect = 2e-13
Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD++LD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRQPSRSKPLRDFI 367
[82][TOP]
>UniRef100_P0A4J0 RNA polymerase sigma factor rpoD n=24 Tax=Streptococcus pneumoniae
RepID=RPOD_STRR6
Length = 369
Score = 79.3 bits (194), Expect = 2e-13
Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD++LD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR ++
Sbjct: 354 LRQPSRSKPLRDFI 367
[83][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 79.0 bits (193), Expect = 3e-13
Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P +EI + + +S ++ R++ K SQ +SL + E+ + + D D+
Sbjct: 223 REPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 277
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 278 PAEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 337
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 338 EAKALRKLRHPSRSKKLKDYL 358
[84][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
BAA-835 RepID=B2UM02_AKKM8
Length = 688
Score = 79.0 bits (193), Expect = 3e-13
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI E +H+ ER R V K +Q +SL + +++ ++D +
Sbjct: 548 REPTPEEIAEEIHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAAENPMEEA 607
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+ L+ + DVLD+L +E VI QRFGL RTL E+ +++RE +R+ E KAL
Sbjct: 608 SFSFLKEKIKDVLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKAL 667
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R+ ++ ++
Sbjct: 668 RKLRHPTRISKIKGFL 683
[85][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 79.0 bits (193), Expect = 3e-13
Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E++ +S ++ R++ K +Q +SL + ++ + ++D + +
Sbjct: 224 REPLPEEIAEQMDMSEDKVREILKIAQEPVSLETPIGEEDDSHLGDFIED-----QDAKP 278
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L++VLDSL P+E V+R RFGLD RTL E+ + ++RE +R+
Sbjct: 279 PADAAAFELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQI 338
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ R L+ Y+
Sbjct: 339 EAKALRKLRHPMRSKRLKDYL 359
[86][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 79.0 bits (193), Expect = 3e-13
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI E + IS ER R++ K +Q +SL + E+ + ++D
Sbjct: 239 REPSPEEIAEAMEISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 298
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L++VLD+L +E V+R RFGLD RTL E+ N ++RE +R+ E KAL
Sbjct: 299 SFMLLKEQLEEVLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSRKLKDFL 374
[87][TOP]
>UniRef100_O33662 RNA polymerase sigma factor rpoD n=2 Tax=Streptococcus mutans
RepID=RPOD_STRMU
Length = 371
Score = 79.0 bits (193), Expect = 3e-13
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 236 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 295
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ +++RE +R+ E KAL K
Sbjct: 296 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRK 355
Query: 211 LKLSARLDYLRRYV 170
L+ +R LR +V
Sbjct: 356 LRHPSRSKQLRDFV 369
[88][TOP]
>UniRef100_Q896X6 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q896X6_CLOTE
Length = 282
Score = 78.6 bits (192), Expect = 3e-13
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI E IS E+ + + SQ +SL + E+ + + D +++
Sbjct: 146 REPTEEEIAETAEISIEKIKRIYNVSQDPVSLETPVGENEDTILQNFISDDRYLPEDKVT 205
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGD-RTLGEIASNLNISREMVRKHEVKAL 218
+L L +VL +L P+E ++R R+GL G G+ RTL EI N++RE +R+ E +A+
Sbjct: 206 EQMLGDTLSNVLSTLSPREERIVRLRYGLVGDGESRTLEEIGREFNLTRERIRQIEARAI 265
Query: 217 MKLKLSARLDYLRRY 173
KL+ R+ L+ Y
Sbjct: 266 RKLRHPTRIKKLQGY 280
[89][TOP]
>UniRef100_Q6LV14 RNA polymerase sigma factor n=1 Tax=Photobacterium profundum
RepID=Q6LV14_PHOPR
Length = 612
Score = 78.6 bits (192), Expect = 3e-13
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L
Sbjct: 475 REPIPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAA 534
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 535 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 594
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R D LR ++
Sbjct: 595 RKLRHPSRSDVLRSFL 610
[90][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 78.6 bits (192), Expect = 3e-13
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398
R PT EEI ++ + ++ R + + SQ +SL + + EE + ++D L +
Sbjct: 452 REPTPEEIAKKAGMPADKVRKILRTSQDPVSLETPIGSDEESHLGDFIEDKTVLSPEQHM 511
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LRL LD+VL +L +E V+R RFGL+ + TL ++ ++RE +R+ E KAL
Sbjct: 512 LKQALRLQLDEVLSTLSEREEQVLRYRFGLEDDTEHTLEQVGKRFGVTRERIRQIEAKAL 571
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R YL+ ++
Sbjct: 572 RKLRHPHRAKYLKPFI 587
[91][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
RepID=Q3D699_STRAG
Length = 369
Score = 78.6 bits (192), Expect = 3e-13
Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R L+ ++
Sbjct: 354 LRHPSRSKQLKDFM 367
[92][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
RepID=Q3CZ52_STRAG
Length = 369
Score = 78.6 bits (192), Expect = 3e-13
Identities = 44/134 (32%), Positives = 79/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD+VLD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 VVLREQLDEVLDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
L+ +R L+ ++
Sbjct: 354 LRHPSRSKQLKDFM 367
[93][TOP]
>UniRef100_Q1Z4S6 RNA polymerase sigma factor n=1 Tax=Photobacterium profundum 3TCK
RepID=Q1Z4S6_PHOPR
Length = 612
Score = 78.6 bits (192), Expect = 3e-13
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L
Sbjct: 475 REPIPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAA 534
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 535 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 594
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R D LR ++
Sbjct: 595 RKLRHPSRSDVLRSFL 610
[94][TOP]
>UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
prausnitzii A2-165 RepID=C7H3D6_9FIRM
Length = 359
Score = 78.6 bits (192), Expect = 3e-13
Identities = 50/137 (36%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD--GGLDGDNR 401
R PT EEI R+ + P+R R++ + +Q +SL + E+ + + D G+ D
Sbjct: 222 REPTAEEIAVRLDMEPDRVRELLQLAQDPISLETPVGEEEDAHLEDFIQDEEAGVPVDEA 281
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
+ LLR L +VL SL P+E V+ RFGL+ RTL E+ N++RE +R+ E KA
Sbjct: 282 GRE-LLRRELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKA 340
Query: 220 LMKLKLSARLDYLRRYV 170
L KL+ +R LR Y+
Sbjct: 341 LRKLRHPSRAKRLRDYL 357
[95][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 78.2 bits (191), Expect = 4e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[96][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 78.2 bits (191), Expect = 4e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[97][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 78.2 bits (191), Expect = 4e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[98][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
RepID=C6JGK6_9FIRM
Length = 375
Score = 78.2 bits (191), Expect = 4e-13
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + + +S ER R++ K SQ +SL + E+ + + D DN
Sbjct: 239 REPTPEEIAKEMDMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 293
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 294 PADAAAFTLLKEQLVEVLSTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 353
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 354 EAKALRKLRHPSRSRKLKDYL 374
[99][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 78.2 bits (191), Expect = 4e-13
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI ++ + ER R++ K SQ +SL + E+ + + D DN
Sbjct: 235 REPTPEEIAAQLDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 289
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+
Sbjct: 290 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 349
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 350 EAKALRKLRHPSRSRKLRDYL 370
[100][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 78.2 bits (191), Expect = 4e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 235 REPTPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHA 294
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 295 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 354
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 355 RKLRHPSRSKRLKDFL 370
[101][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 78.2 bits (191), Expect = 4e-13
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R P+ EE+ E + ++PE+ R++ K +Q +SL + ++ + ++D L +
Sbjct: 236 REPSPEEVAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAA 295
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 296 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 356 RKLRHPSRSKRLKDFL 371
[102][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 77.8 bits (190), Expect = 6e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG-DNRR 398
R PT EEI + + I+PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 225 REPTPEEISKEMEITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAA 284
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 285 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 344
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 345 RKLRHPSRSKRLKDFL 360
[103][TOP]
>UniRef100_Q2BZN9 RNA polymerase sigma factor n=1 Tax=Photobacterium sp. SKA34
RepID=Q2BZN9_9GAMM
Length = 616
Score = 77.8 bits (190), Expect = 6e-13
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L
Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAA 538
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 539 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R D LR ++
Sbjct: 599 RKLRHPSRSDVLRSFL 614
[104][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 77.8 bits (190), Expect = 6e-13
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI E + ++P++ R++ K +Q +SL + ++ + ++D +
Sbjct: 238 REPTPEEIAEDMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA 297
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 298 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 357
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 358 RKLRHPSRSKRLKDFL 373
[105][TOP]
>UniRef100_Q1ZM24 RNA polymerase sigma factor n=1 Tax=Photobacterium angustum S14
RepID=Q1ZM24_PHOAS
Length = 616
Score = 77.8 bits (190), Expect = 6e-13
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L
Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAA 538
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LR A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 539 TATNLRAATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R D LR ++
Sbjct: 599 RKLRHPSRSDVLRSFL 614
[106][TOP]
>UniRef100_C4CH81 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CH81_9CHLR
Length = 538
Score = 77.8 bits (190), Expect = 6e-13
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI + + P++ R++ K SQ +SL E+ + ++D L +
Sbjct: 402 REPTSEEIAAEMGLPPDKVREILKISQEPVSLEMPIGEEEDSNLGDFIEDSKALAPSDAA 461
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ +DDVL SL +E V+ RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 462 SLKLLKEQVDDVLGSLGDRERRVLELRFGLDDGRTRTLEEVGREFGVTRERIRQIEAKAL 521
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R LR Y+
Sbjct: 522 RKLRHPSRSKKLRDYL 537
[107][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 77.8 bits (190), Expect = 6e-13
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + + ER R++ K SQ +SL + E+ + + D DN
Sbjct: 234 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+
Sbjct: 289 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 348
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 349 EAKALRKLRHPSRSRKLRDYL 369
[108][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 77.8 bits (190), Expect = 6e-13
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + + ER R++ K SQ +SL + E+ + + D DN
Sbjct: 233 REPTPEEIAAELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 287
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+
Sbjct: 288 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 347
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 348 EAKALRKLRHPSRSRKLRDYL 368
[109][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV--DDGGLDGDNRRQ 395
P+ EEI ER+ +S ++ R++ + +Q +SL + E+ + + DD + + Q
Sbjct: 230 PSAEEIAERLDMSVDKVREIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQ 289
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LL+ L DVL +L P+E V+R RFGL+ RTL E+ N++RE +R+ E KAL
Sbjct: 290 -TLLKEQLADVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALR 348
Query: 214 KLKLSARLDYLRRYV 170
KL+ +R LR ++
Sbjct: 349 KLRHPSRSKKLRDFL 363
[110][TOP]
>UniRef100_C4Z4Y6 RNA polymerase sigma factor n=1 Tax=Eubacterium eligens ATCC 27750
RepID=C4Z4Y6_EUBE2
Length = 434
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI E + I ER R++ K SQ +SL + E+ + + D DN
Sbjct: 298 REPSPEEIAENMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 352
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VL +L +E V+R RFG+D RTL E+ N++RE +R+
Sbjct: 353 PAEAAASTLLKEQLVEVLGTLTEREQKVLRLRFGMDDGRARTLEEVGKEFNVTRERIRQI 412
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 413 EAKALRKLRHPSRSRKLRDYL 433
[111][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D D + +
Sbjct: 236 REPSPEEIAEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQ--DATSPAE 293
Query: 394 PA---LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224
A LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E K
Sbjct: 294 HAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK 353
Query: 223 ALMKLKLSARLDYLRRYV 170
AL KL+ +R L+ ++
Sbjct: 354 ALRKLRHPSRSKRLKDFL 371
[112][TOP]
>UniRef100_B5E4I8 RNA polymerase sigma factor n=1 Tax=Streptococcus pneumoniae G54
RepID=B5E4I8_STRP4
Length = 369
Score = 77.4 bits (189), Expect = 7e-13
Identities = 43/134 (32%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
PT E+I ER+ ++P++ R++ K +Q +SL + ++ + ++D ++ +
Sbjct: 234 PTPEQIAERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTR 293
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
+LR LD++LD+L +E V+R RFGLD RTL ++ N++RE +R+ E KAL K
Sbjct: 294 IVLREQLDEILDTLTDREENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRK 353
Query: 211 LKLSARLDYLRRYV 170
+ +R LR ++
Sbjct: 354 XRQPSRSKPLRDFI 367
[113][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
RepID=C9L8C6_RUMHA
Length = 330
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E +++S ER R++ K SQ +SL + E+ + + D DN
Sbjct: 194 REPHPEEIAEEMNMSVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 248
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 249 PADAAAFTLLKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 308
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 309 EAKALRKLRHPSRSRKLKDYL 329
[114][TOP]
>UniRef100_C8W713 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Atopobium
parvulum DSM 20469 RepID=C8W713_ATOPD
Length = 455
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI + +SP+R R++ K SQ +SL + E+ + ++D + +
Sbjct: 318 RDPTPEEIGSEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAVAPPDAA 377
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++LR L+ VLDSL +E VI+ RFGL+ RTL E+ ++RE +R+ E K L
Sbjct: 378 SDSMLREQLEQVLDSLADRERKVIKFRFGLEDGHPRTLEEVGKEFGVTRERIRQIESKTL 437
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 438 AKLRHPSRSGRLKDYM 453
[115][TOP]
>UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4FZZ1_ABIDE
Length = 372
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/136 (34%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
R P EEI + +++ PE+ R + K +Q +S + E+ I + DD +
Sbjct: 236 REPQPEEIGKELNMEPEKVRSIMKIAQEPVSFETPIGEEEDSHIGDFIPDDSNMAPVEAA 295
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A+L+ L++VLDSL +E VI+ RFGL+ RTL E+ N++RE +R+ E KAL
Sbjct: 296 THAILKEQLEEVLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKAL 355
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 356 RKLRQPSRSRKLKDYL 371
[116][TOP]
>UniRef100_C4FWR1 RNA polymerase sigma factor n=1 Tax=Catonella morbi ATCC 51271
RepID=C4FWR1_9FIRM
Length = 379
Score = 77.4 bits (189), Expect = 7e-13
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R PT EEI + + E+ R++ K +Q +SL + ++ + ++D G + +
Sbjct: 243 REPTPEEIGAEMDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEGAMSPEVFT 302
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
ALLR L+DVLD+L +E V+R RFGLD RTL ++ ++RE +R+ E KAL
Sbjct: 303 SSALLREQLEDVLDTLTDREENVLRLRFGLDDGNIRTLEQVGKVFGVTRERIRQIEAKAL 362
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 363 RKLRHPSRSKQLKDFL 378
[117][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
10507 RepID=C0CQD9_9FIRM
Length = 374
Score = 77.4 bits (189), Expect = 7e-13
Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + + +S +R R++ K SQ +SL + E+ + + D DN
Sbjct: 238 REPTPEEIAKEMEMSVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 292
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 293 PADAAAFTLLKEQLVEVLSTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 352
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 353 EAKALRKLRHPSRSRKLKDYL 373
[118][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + IS ER R++ K +Q +SL + E+ + ++D
Sbjct: 232 REPTPEEIAREMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 291
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L++VL++L P+E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 292 SFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKAL 351
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 352 RKLRHPSRSKKLKDFL 367
[119][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 77.4 bits (189), Expect = 7e-13
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHI--TTEEEFINGVVDDGGLDGDN 404
+R PT+EE+ E IS R R VT+ S+ SL R + +E+F V D +
Sbjct: 357 KRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSL-DRCVGKDMDEKFSEIVADTNSESTET 415
Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224
L + LD VLD+L +E V+R R+GLD ++L E+ N ++SRE VR+ E+K
Sbjct: 416 IVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMK 475
Query: 223 ALMKLKLSARLDYLRRYV 170
A+ KL+ + R +L+ Y+
Sbjct: 476 AMRKLRQNHRTQHLKHYL 493
[120][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 77.4 bits (189), Expect = 7e-13
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Frame = -2
Query: 577 QRPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHI--TTEEEFINGVVDDGGLDGDN 404
+R PT+EE+ E IS R R VT+ S+ SL R + +E+F V D +
Sbjct: 454 KRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSL-DRCVGKDMDEKFSEIVADTNSESTET 512
Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224
L + LD VLD+L +E V+R R+GLD ++L E+ N ++SRE VR+ E+K
Sbjct: 513 IVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMK 572
Query: 223 ALMKLKLSARLDYLRRYV 170
A+ KL+ + R +L+ Y+
Sbjct: 573 AMRKLRQNHRTQHLKHYL 590
[121][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 77.0 bits (188), Expect = 1e-12
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 201 REPSPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSEHA 260
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 261 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 320
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 321 RKLRHPSRSKRLKDFL 336
[122][TOP]
>UniRef100_UPI00017446E0 RNA polymerase sigma factor RpoD n=1 Tax=Verrucomicrobium spinosum
DSM 4136 RepID=UPI00017446E0
Length = 576
Score = 77.0 bits (188), Expect = 1e-12
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSR--HITTEEEFINGVVDDGGLDGDNR 401
R PT +EI E +H+ ER V + SQ +SL ++ + EF + + D+ +
Sbjct: 437 RDPTPDEIAEEIHLPVERVNAVLRMSQQPVSLQTKVGDSDGDTEFGDFIEDNTSVSPMEL 496
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGL-DGKGDRTLGEIASNLNISREMVRKHEVK 224
LLR L DVLDSL +E V+ QRFGL DG G RTL E+ +++RE +R+ E K
Sbjct: 497 TAMNLLRDKLKDVLDSLTDRERAVLEQRFGLVDGSG-RTLEEVGRQFHVTRERIRQIEAK 555
Query: 223 ALMKLKLSARL 191
AL KL+ R+
Sbjct: 556 ALRKLRHPTRI 566
[123][TOP]
>UniRef100_Q493Y1 RNA polymerase sigma factor n=1 Tax=Candidatus Blochmannia
pennsylvanicus str. BPEN RepID=Q493Y1_BLOPB
Length = 611
Score = 77.0 bits (188), Expect = 1e-12
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 7/140 (5%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLD-------G 410
PT EE+ ER+ +S ++ R V K ++ +S+ + E+ + ++D D
Sbjct: 476 PTPEELAERMLMSEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATS 535
Query: 409 DNRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHE 230
DN LR A D+L L P+E V+R RFG+D D TL E+ +++RE +R+ E
Sbjct: 536 DN------LRTATHDILSGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 589
Query: 229 VKALMKLKLSARLDYLRRYV 170
KAL KL+ +R + LR ++
Sbjct: 590 AKALRKLRHPSRSEILRSFL 609
[124][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 77.0 bits (188), Expect = 1e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 298
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[125][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 77.0 bits (188), Expect = 1e-12
Identities = 46/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R PT EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPTPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[126][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 77.0 bits (188), Expect = 1e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 4 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 63
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 64 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 123
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 124 RKLRHPSRSKRLKDFL 139
[127][TOP]
>UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552
RepID=B1C3P6_9FIRM
Length = 415
Score = 77.0 bits (188), Expect = 1e-12
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNR 401
R PT EEI ER+ ++PE+ R++ K S +SL + ++ + ++D G + D+
Sbjct: 277 REPTAEEIAERIDGMTPEKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGVMSPDDY 336
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
LL+ L++VL L +E V+R RFGLD RTL E+ +++RE +R+ E KA
Sbjct: 337 AANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKA 396
Query: 220 LMKLKLSARLDYLRRYV 170
L KLK +R L+ ++
Sbjct: 397 LRKLKHPSRSKRLKDFL 413
[128][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
RepID=B0ME78_9FIRM
Length = 370
Score = 77.0 bits (188), Expect = 1e-12
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + I +R R++ K SQ +SL + E+ + + D DN
Sbjct: 234 REPLPEEIAEEMDIPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 289 PADAAAFTLLKEQLSEVLGTLTEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQI 348
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 349 EAKALRKLRHPSRSRKLKDYL 369
[129][TOP]
>UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
M21/2 RepID=A8SFN0_9FIRM
Length = 360
Score = 77.0 bits (188), Expect = 1e-12
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV--DDGGLDGDNR 401
R PT EEI + + P++ R++ + SQ +SL + E+ + + +D G+ D
Sbjct: 223 REPTVEEIAAALDMEPDKVRELLQLSQEPISLETPVGEEEDAHLEDFIQDEDAGVPVDEA 282
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
+ LLR L VL SL P+E VI RFGL+ RTL E+ N++RE VR+ E KA
Sbjct: 283 GRQ-LLRRELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKA 341
Query: 220 LMKLKLSARLDYLRRYV 170
L KL+ +R LR Y+
Sbjct: 342 LRKLRHPSRAKLLRDYL 358
[130][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 76.6 bits (187), Expect = 1e-12
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + I ER R++ K +Q +SL + E+ + ++D
Sbjct: 252 REPTPEEIAAVMDIPVERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAA 311
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L++VL+SL P+E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 312 SFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKAL 371
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 372 RKLRHPSRSKKLKDYL 387
[131][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 76.6 bits (187), Expect = 1e-12
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EE+ + + +SP++ R++ K +Q +SL + ++ + ++D L +
Sbjct: 237 REPTPEEVGKEMDLSPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[132][TOP]
>UniRef100_Q5E2J7 RNA polymerase sigma factor n=1 Tax=Vibrio fischeri ES114
RepID=Q5E2J7_VIBF1
Length = 613
Score = 76.6 bits (187), Expect = 1e-12
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ +
Sbjct: 476 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 535
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
L+ A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 536 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 596 RKLRHPSRSEVLRSFL 611
[133][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 76.6 bits (187), Expect = 1e-12
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R P+ EEI + + ++PE+ R++ K +Q +SL + ++ + ++D + +
Sbjct: 228 REPSPEEIAKEMELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAA 287
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 288 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 347
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 348 RKLRHPSRSKRLKDFL 363
[134][TOP]
>UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L1K5_THERP
Length = 340
Score = 76.6 bits (187), Expect = 1e-12
Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING--VVDDGGLDGDNR 401
R PT EEI E + + PE+ + +A+Q +SL + ++ E+E G + D+ +
Sbjct: 203 RQPTPEEIAEAMSVQPEKIAQIVRAAQRAVSL-DQPLSEEDETSLGDLIADELAQSPEEL 261
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
+ +L+R + ++L+ L P+E LV++ R+GL RTL E+ L ISRE VR+ E +A
Sbjct: 262 AEESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEA 321
Query: 220 LMKLKLSAR 194
L KL+ AR
Sbjct: 322 LRKLRRIAR 330
[135][TOP]
>UniRef100_B6EM18 RNA polymerase sigma factor n=1 Tax=Aliivibrio salmonicida LFI1238
RepID=B6EM18_ALISL
Length = 610
Score = 76.6 bits (187), Expect = 1e-12
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ +
Sbjct: 473 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 532
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
L+ A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 533 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 592
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 593 RKLRHPSRSEVLRSFL 608
[136][TOP]
>UniRef100_B5FB86 RNA polymerase sigma factor n=1 Tax=Vibrio fischeri MJ11
RepID=B5FB86_VIBFM
Length = 613
Score = 76.6 bits (187), Expect = 1e-12
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ +
Sbjct: 476 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSA 535
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
L+ A +DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 536 TSTSLKFATNDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 596 RKLRHPSRSEVLRSFL 611
[137][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 76.6 bits (187), Expect = 1e-12
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI + + IS E+ R++ K +Q +SL + E+ + ++D + R
Sbjct: 231 REPSPEEIAKEMDISGEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDA-----DARA 285
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LLR LD+VL +L +E V+R RFGLD RTL E+ ++RE +R+
Sbjct: 286 PAEEASFTLLREQLDEVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 345
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E K L KL+ +R L+ Y+
Sbjct: 346 EAKTLRKLRHPSRSKKLKDYL 366
[138][TOP]
>UniRef100_A2RIN0 RNA polymerase sigma factor n=2 Tax=Lactococcus lactis subsp.
cremoris RepID=A2RIN0_LACLM
Length = 447
Score = 76.6 bits (187), Expect = 1e-12
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407
R P+ EEI + +H++P++ R+V K +Q +SL + ++ +FI V + +D
Sbjct: 312 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 371
Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227
NR LLR LD+V+D+L +E V+R RFGLD TL ++ ++RE +R+ E
Sbjct: 372 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 428
Query: 226 KALMKLKLSARLDYLRRYV 170
KA+ KL+ R LR ++
Sbjct: 429 KAIKKLRHPRRSKPLRDFM 447
[139][TOP]
>UniRef100_B5WPE5 RNA polymerase sigma factor n=1 Tax=Burkholderia sp. H160
RepID=B5WPE5_9BURK
Length = 665
Score = 76.6 bits (187), Expect = 1e-12
Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Frame = -2
Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377
+ ER+ +S E+ R + K ++ +SL + + + +++D + + A LR
Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSLETPVGDDGDATLGDMIEDAAVSSPADAAMQADLRA 594
Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197
A+DD LDSL P+E V+R R+G++ K D TL E+ +++RE +R+ E KA+ KL +
Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654
Query: 196 RLDYLRRYV 170
R D L+ ++
Sbjct: 655 RADRLKSFL 663
[140][TOP]
>UniRef100_P58290 RNA polymerase sigma factor rpoD (Fragment) n=1 Tax=Lactococcus
lactis subsp. cremoris RepID=RPOD_LACLC
Length = 364
Score = 76.6 bits (187), Expect = 1e-12
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407
R P+ EEI + +H++P++ R+V K +Q +SL + ++ +FI V + +D
Sbjct: 229 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 288
Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227
NR LLR LD+V+D+L +E V+R RFGLD TL ++ ++RE +R+ E
Sbjct: 289 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 345
Query: 226 KALMKLKLSARLDYLRRYV 170
KA+ KL+ R LR ++
Sbjct: 346 KAIKKLRHPRRSKPLRDFM 364
[141][TOP]
>UniRef100_Q04506 RNA polymerase sigma factor rpoD n=1 Tax=Lactococcus lactis subsp.
lactis RepID=RPOD_LACLA
Length = 386
Score = 76.6 bits (187), Expect = 1e-12
Identities = 48/139 (34%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEE----EFINGVVDDGGLDGD 407
R P+ EEI + +H++P++ R+V K +Q +SL + ++ +FI V + +D
Sbjct: 251 RDPSPEEIGKELHMAPDKVREVLKIAQEPVSLETPIGEEDDSHLGDFIEDDVIESPVDYT 310
Query: 406 NRRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227
NR LLR LD+V+D+L +E V+R RFGLD TL ++ ++RE +R+ E
Sbjct: 311 NR---ILLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEA 367
Query: 226 KALMKLKLSARLDYLRRYV 170
KA+ KL+ R LR ++
Sbjct: 368 KAIKKLRHPRRSKPLRDFM 386
[142][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QRZ3_PERMH
Length = 577
Score = 76.3 bits (186), Expect = 2e-12
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRR 398
R PT EEI ++V + PE+ R + + SQ +SL + +E + ++D + +
Sbjct: 440 REPTPEEIAKKVGMPPEKVRKILRTSQEPISLETPIGDDDESHLGDFIEDKTVMSPEQHV 499
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LR L++VL +L +E V+R RFGL+ + TL ++ ++RE +R+ E KAL
Sbjct: 500 LRQALRQQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKAL 559
Query: 217 MKLKLSARLDYLRRY 173
KL+ R YLR +
Sbjct: 560 RKLRHPHRAKYLRPF 574
[143][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 76.3 bits (186), Expect = 2e-12
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R PT EEI E + + E+ R++ K +Q +SL + E+ + ++D +
Sbjct: 222 REPTPEEIGEEMGMPAEKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDEDAPAPASAA 281
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR LDDVLD+L +E V+ RFGL+ RTL E+ ++RE +R+ E KAL
Sbjct: 282 SFTLLREQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKAL 341
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 342 RKLRHPSRSKKLKDYL 357
[144][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 76.3 bits (186), Expect = 2e-12
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + ++PE+ R++ K +Q +SL + ++ + + D D
Sbjct: 232 REPTPEEIAAEMDLTPEKVREIQKIAQEPVSLETPIGEEDDSHLGDFIPD-----DEAPA 286
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+
Sbjct: 287 PADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQI 346
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ ++
Sbjct: 347 EAKALRKLRHPSRSKRLKDFL 367
[145][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 76.3 bits (186), Expect = 2e-12
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + + + ER R++ K SQ +SL + E+ + + D DN
Sbjct: 235 REPLPEEIAKELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 289
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+
Sbjct: 290 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 349
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 350 EAKALRKLRHPSRSRKLRDYL 370
[146][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
RepID=A5ZYP8_9FIRM
Length = 330
Score = 76.3 bits (186), Expect = 2e-12
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI E + + +R R++ K SQ +SL + E+ + + D DN
Sbjct: 194 REPTPEEIAEEMKMPVDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 248
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 249 PADAAAFTLLKEQLIEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 308
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 309 EAKALRKLRHPSRSRKLKDYL 329
[147][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 76.3 bits (186), Expect = 2e-12
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + + + ER R++ K SQ +SL + E+ + + D DN
Sbjct: 247 REPLPEEIAKELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 301
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+
Sbjct: 302 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 361
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 362 EAKALRKLRHPSRSRKLRDYL 382
[148][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 76.3 bits (186), Expect = 2e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSEAQSPSDHA 298
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DV+D+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVIDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[149][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
DSM 15897 RepID=UPI000196B4EB
Length = 418
Score = 75.9 bits (185), Expect = 2e-12
Identities = 47/137 (34%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNR 401
R PT EEI E++ ++P + R++ K S +SL + ++ + ++D G + D+
Sbjct: 280 REPTAEEIAEKMDGMTPAKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGAMSPDDY 339
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
LL+ L++VL L +E V+R RFGLD RTL E+ N++RE +R+ E KA
Sbjct: 340 ASNELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKA 399
Query: 220 LMKLKLSARLDYLRRYV 170
L KLK +R L+ ++
Sbjct: 400 LRKLKHPSRSKRLKDFL 416
[150][TOP]
>UniRef100_Q1QBP8 RNA polymerase sigma factor n=1 Tax=Psychrobacter cryohalolentis K5
RepID=Q1QBP8_PSYCK
Length = 648
Score = 75.9 bits (185), Expect = 2e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R PT EE+ ER+ + + R V K ++ +S+ + E+ + ++DG + +
Sbjct: 510 REPTPEELGERLEMDEAKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDA 569
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LR A DVL +L +E V++ RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 570 TAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKAL 629
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R ++LR ++
Sbjct: 630 RKLRHPSRSEHLRSFL 645
[151][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 75.9 bits (185), Expect = 2e-12
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D + +
Sbjct: 233 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEVQSPSDHA 292
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 293 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 352
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 353 RKLRHPSRSKRLKDFM 368
[152][TOP]
>UniRef100_B3DW95 RNA polymerase sigma factor n=1 Tax=Methylacidiphilum infernorum V4
RepID=B3DW95_METI4
Length = 623
Score = 75.9 bits (185), Expect = 2e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + +S +R R + K +Q +SL ++ +E+ ++D + +
Sbjct: 482 REPTPEEIADETQMSVDRIRTIIKMAQHPISLQAQVGESEDTTFGDFIEDKAAENPSEMT 541
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+LLR + DVL +L +E VI QRFGL RTL E+ ++RE +R+ E KAL
Sbjct: 542 GYSLLREKIKDVLGTLTERERTVIEQRFGLLDGYPRTLEEVGKQFRVTRERIRQIEAKAL 601
Query: 217 MKLKLSARLDYLRRYV 170
K++ RL +L+ ++
Sbjct: 602 RKMRHPTRLRHLKGFL 617
[153][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 75.9 bits (185), Expect = 2e-12
Identities = 47/135 (34%), Positives = 76/135 (56%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI E + ++ E+ R + K++Q +SL + E+ + ++ + D
Sbjct: 266 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIENPDQDVA 325
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL +L P+E V+R R+GLD +TL EI +++RE +R+ E KAL+
Sbjct: 326 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALL 385
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 386 KLRHPNRNGVLKEYI 400
[154][TOP]
>UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfotomaculum acetoxidans DSM 771
RepID=C8W3K2_9FIRM
Length = 359
Score = 75.9 bits (185), Expect = 2e-12
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + ++I+ ++ R++ K +Q +SL + E+ + ++D + R
Sbjct: 223 REPMPEEIAKEMNITEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIED-----HDARA 277
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LLR LDDVL +L +E V+R RFGLD RTL E+ ++RE +R+
Sbjct: 278 PAEEASFTLLREQLDDVLKTLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 337
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E K L KL+ +R L+ Y+
Sbjct: 338 EAKTLRKLRHPSRSKKLKDYL 358
[155][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 75.9 bits (185), Expect = 2e-12
Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P +EI + + +S ++ R++ K SQ +SL + E+ + + D D+
Sbjct: 223 REPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 277
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L DVLD+L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 278 PAEAAAFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 337
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 338 EAKALRKLRHPSRSKKLKDYL 358
[156][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V565_9FIRM
Length = 382
Score = 75.9 bits (185), Expect = 2e-12
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGL-DGDNRR 398
R PT EEI R+ +S R R++ K SQ +SL + E+ ++ ++D D +
Sbjct: 245 RDPTPEEIAHRMGLSVARVREIMKISQEPVSLETPIGEEEDTRLSDFIEDEAAPDPADAA 304
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ + +VL +L P+E V+R RFGL RTL E+ N ++RE +R+ E KAL
Sbjct: 305 SMLLLKEQISEVLTTLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKAL 364
Query: 217 MKLKLSARLDYLR 179
KL+ RL L+
Sbjct: 365 RKLRHPVRLRKLQ 377
[157][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
14600 RepID=C4G971_9FIRM
Length = 614
Score = 75.9 bits (185), Expect = 2e-12
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI + +P+R R++ K SQ +SL + E+ + + D +N
Sbjct: 478 REPSPEEIAREMETTPDRVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----ENAPV 532
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L++VLD+L +E V+ RFGL+ RTL E+ N++RE +R+
Sbjct: 533 PAEAATFTLLKEQLNEVLDTLTERERKVLILRFGLEDGRGRTLEEVGKEFNVTRERIRQI 592
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 593 EAKALRKLRHPSRSRKLKDYL 613
[158][TOP]
>UniRef100_C2D7B9 RNA polymerase sigma factor n=1 Tax=Atopobium vaginae DSM 15829
RepID=C2D7B9_9ACTN
Length = 441
Score = 75.9 bits (185), Expect = 2e-12
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI E++ +S +R R++ K SQ +SL + E+ + ++D + +
Sbjct: 304 REPTPEEIGEQMKMSADRVREIQKISQEPVSLETPIGEEEDSSLGDFIEDSTAVAPPDAA 363
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++LR L+ VLD L +E VI+ RFGL+ RTL E+ ++RE +R+ E K L
Sbjct: 364 SDSMLREQLNQVLDGLADRERKVIKFRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTL 423
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 424 AKLRHPSRSGRLKDYI 439
[159][TOP]
>UniRef100_B9CNX8 RNA polymerase sigma factor n=1 Tax=Atopobium rimae ATCC 49626
RepID=B9CNX8_9ACTN
Length = 455
Score = 75.9 bits (185), Expect = 2e-12
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI + +SP+R R++ K SQ +SL + E+ + ++D + +
Sbjct: 318 RDPTPEEIGAEMGMSPDRVREIQKISQEPVSLETPIGEEEDSQLGDFIEDSTAIAPPDAA 377
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++LR L+ VLD L +E VI+ RFGL+ RTL E+ ++RE +R+ E K L
Sbjct: 378 SDSMLREQLEQVLDGLADRERKVIKFRFGLEDGRPRTLEEVGREFGVTRERIRQIESKTL 437
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 438 AKLRHPSRSSRLKDYM 453
[160][TOP]
>UniRef100_B5CM66 RNA polymerase sigma factor n=1 Tax=Ruminococcus lactaris ATCC
29176 RepID=B5CM66_9FIRM
Length = 372
Score = 75.9 bits (185), Expect = 2e-12
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + + + ER R++ K SQ +SL + E+ + + D DN
Sbjct: 236 REPLPEEIAKEMDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 290
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ LD+VLD+L +E V+R RFG++ RTL E+ +++RE +R+
Sbjct: 291 PAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGMNDGRARTLEEVGREFDVTRERIRQI 350
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 351 EAKALRKLRHPSRSRKLRDYL 371
[161][TOP]
>UniRef100_A6D7V7 RNA polymerase sigma factor n=1 Tax=Vibrio shilonii AK1
RepID=A6D7V7_9VIBR
Length = 616
Score = 75.9 bits (185), Expect = 2e-12
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ +
Sbjct: 479 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPVDSA 538
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LR+A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 539 TMTSLRVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 598
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 599 RKLRHPSRSETLRSFL 614
[162][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 75.9 bits (185), Expect = 2e-12
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 7/143 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSL------HSRHITTEEEFINGVVDDGGLD 413
RPPT EEI + +S E+ + KA+Q +SL ++ T E+ I D +
Sbjct: 378 RPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTMGGENKGRTIEDTLI-----DANAE 432
Query: 412 GDNRRQ-PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRK 236
G + +LL+ L++VL++L P+E V+R R+GLD +TL EI + +++RE +R+
Sbjct: 433 GPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQ 492
Query: 235 HEVKALMKLKLSARLDYLRRYVV 167
E KAL KLK +R L+ Y V
Sbjct: 493 IEAKALRKLKQPSRNQVLQEYFV 515
[163][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[164][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EE+ + + + E+ R++ K +Q +SL + E+ + + D
Sbjct: 236 REPTPEELAKEMGMPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 295
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 296 AYTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 355
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 356 RKLRHPSRSKKLKDFL 371
[165][TOP]
>UniRef100_Q4FS98 RNA polymerase sigma factor n=1 Tax=Psychrobacter arcticus 273-4
RepID=Q4FS98_PSYA2
Length = 647
Score = 75.5 bits (184), Expect = 3e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R PT EE+ ER+ + + R V K ++ +S+ + E+ + ++DG + +
Sbjct: 509 REPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGTISSPVDDA 568
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LR A DVL +L +E V++ RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 569 TAAGLREATRDVLGNLTEREARVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKAL 628
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R ++LR ++
Sbjct: 629 RKLRHPSRSEHLRSFL 644
[166][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[167][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
R PT EEI + +++ E+ R++ K +Q +SL + E+ + + DD L
Sbjct: 281 REPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAA 340
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++L+ L +VLDSL +E V++ RFGL+ RTL E+ N++RE +R+ E KAL
Sbjct: 341 AYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 400
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 401 RKLRHPSRSKKLKDFL 416
[168][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[169][TOP]
>UniRef100_A7MWQ8 RNA polymerase sigma factor n=1 Tax=Vibrio harveyi ATCC BAA-1116
RepID=A7MWQ8_VIBHB
Length = 620
Score = 75.5 bits (184), Expect = 3e-12
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 603 RKLRHPSRSETLRSFL 618
[170][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
R PT EEI + +++ E+ R++ K +Q +SL + E+ + + DD L
Sbjct: 275 REPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAA 334
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++L+ L +VLDSL +E V++ RFGL+ RTL E+ N++RE +R+ E KAL
Sbjct: 335 AYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKAL 394
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 395 RKLRHPSRSKKLKDFL 410
[171][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MZ09_9FUSO
Length = 392
Score = 75.5 bits (184), Expect = 3e-12
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
+ PT EE+ E++ + E+ + + + +Q +SL + + E+ + V+D +
Sbjct: 256 KEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDAT 315
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ LD+VL +L +E +V+R R+GLD +TL E+ N++RE +R+ EVKAL
Sbjct: 316 TRVLLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKAL 375
Query: 217 MKLKLSARLDYLRRY 173
KL+ +R L Y
Sbjct: 376 RKLRHPSRRKKLEDY 390
[172][TOP]
>UniRef100_C8KWQ0 RNA polymerase sigma factor RpoD n=1 Tax=Actinobacillus minor 202
RepID=C8KWQ0_9PAST
Length = 621
Score = 75.5 bits (184), Expect = 3e-12
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R T EE+ ER+++ ++ R V K ++ +S+ + ++ + + D L+
Sbjct: 484 REATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 543
Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LR+A ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 544 TAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 604 RKLRHPSRSETLRSFL 619
[173][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EE+ + + + E+ R++ K +Q +SL + E+ + + D
Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 341 RKLRHPSRSKKLKDFL 356
[174][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EE+ + + + E+ R++ K +Q +SL + E+ + + D
Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 341 RKLRHPSRSKKLKDFL 356
[175][TOP]
>UniRef100_C5S146 RNA polymerase sigma factor n=1 Tax=Actinobacillus minor NM305
RepID=C5S146_9PAST
Length = 621
Score = 75.5 bits (184), Expect = 3e-12
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R T EE+ ER+++ ++ R V K ++ +S+ + ++ + + D L+
Sbjct: 484 REATPEELAERMNMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 543
Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LR+A ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 544 TAESLRIATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 604 RKLRHPSRSETLRSFL 619
[176][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EE+ + + + E+ R++ K +Q +SL + E+ + + D
Sbjct: 221 REPTPEELAKEMGMPEEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 281 AFTMLKEQLMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 341 RKLRHPSRSKKLKDFL 356
[177][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[178][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[179][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[180][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[181][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[182][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[183][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[184][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[185][TOP]
>UniRef100_C0FBN4 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
RepID=C0FBN4_9CLOT
Length = 372
Score = 75.5 bits (184), Expect = 3e-12
Identities = 47/136 (34%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EE+ E++ + ER R++ K SQ +SL + E+ + + D + +
Sbjct: 236 REPSAEELAEKLDMPVERVREIMKISQDPVSLETPIGEEEDSHLGDFIQDDHVQVPVDAA 295
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL L +VLD+L +E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 296 TYTLLHEQLMEVLDTLTDREQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKAL 355
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 356 RKLRHPSRSRKLKDYL 371
[186][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 75.5 bits (184), Expect = 3e-12
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EEI + + I ER R++ K SQ +SL + E+ + + D DN
Sbjct: 312 REPTPEEIAKEMDIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 366
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA +L+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 367 PAEEAASTILKEQLVEVLGTLTEREQKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQI 426
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR ++
Sbjct: 427 EAKALRKLRHPSRSRKLRDFL 447
[187][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 239 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[188][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 75.5 bits (184), Expect = 3e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P+ EEI E + ++PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 237 REPSPEEIGEEMDLAPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHA 296
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 297 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 357 RKLRHPSRSKRLKDFL 372
[189][TOP]
>UniRef100_A8T8H9 RNA polymerase sigma factor n=1 Tax=Vibrio sp. AND4
RepID=A8T8H9_9VIBR
Length = 620
Score = 75.5 bits (184), Expect = 3e-12
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 603 RKLRHPSRSETLRSFL 618
[190][TOP]
>UniRef100_A6B6J7 RNA polymerase sigma factor n=2 Tax=Vibrio parahaemolyticus
RepID=A6B6J7_VIBPA
Length = 620
Score = 75.5 bits (184), Expect = 3e-12
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 543 TATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 603 RKLRHPSRSETLRSFL 618
[191][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 75.1 bits (183), Expect = 4e-12
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNRR 398
R PT EEI + + ISPE+ R++ K SQ +SL + + + ++D L +
Sbjct: 180 REPTPEEIGKEMDISPEKVREIQKVSQEPVSLETPVGEESDSNLGDFIEDQDALAPADAA 239
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L++VLD+L +E V+R RFGL+ RTL E+ ++RE +R+ E KAL
Sbjct: 240 AFELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKAL 299
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 300 RKLRHPSRSKRLKDFL 315
[192][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367
[193][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367
[194][TOP]
>UniRef100_Q13R65 RNA polymerase sigma factor n=1 Tax=Burkholderia xenovorans LB400
RepID=Q13R65_BURXL
Length = 665
Score = 75.1 bits (183), Expect = 4e-12
Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = -2
Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377
+ ER+ +S E+ R + K ++ +S+ + + + +++D + A LR
Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRA 594
Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197
A+DD LDSL P+E V+R R+G++ K D TL E+ +++RE +R+ E KA+ KL +
Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654
Query: 196 RLDYLRRYV 170
R D L+ ++
Sbjct: 655 RADRLKSFL 663
[195][TOP]
>UniRef100_C5CDI4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1
RepID=C5CDI4_KOSOT
Length = 405
Score = 75.1 bits (183), Expect = 4e-12
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ-P 392
PT EE+ + +PE+ ++ AS+ +SL S EE + V D ++
Sbjct: 263 PTVEELGKLTGKTPEKIEEILAASKETVSLESPISGDEESTMGDFVHDESIEKPEEAAIK 322
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR +D+VLD+L P+E +V++ R+G LDGK +TL E+ N++RE +R+ EVKAL
Sbjct: 323 MLLREQIDEVLDTLSPREAMVLKMRYGLLDGK-TKTLEEVGQFFNVTRERIRQIEVKALR 381
Query: 214 KLKLSARLDYLR 179
KL+ +R L+
Sbjct: 382 KLRHPSRSKQLK 393
[196][TOP]
>UniRef100_B3H2B0 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae
serovar 7 str. AP76 RepID=B3H2B0_ACTP7
Length = 619
Score = 75.1 bits (183), Expect = 4e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R T EE+ ER+ + ++ R V K ++ +S+ + ++ + + D L+
Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541
Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LRLA ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 602 RKLRHPSRSETLRSFL 617
[197][TOP]
>UniRef100_B2TBE5 RNA polymerase sigma factor n=1 Tax=Burkholderia phytofirmans PsJN
RepID=B2TBE5_BURPP
Length = 665
Score = 75.1 bits (183), Expect = 4e-12
Identities = 40/129 (31%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = -2
Query: 553 IIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQPALLRL 377
+ ER+ +S E+ R + K ++ +S+ + + + +++D + A LR
Sbjct: 535 LAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRA 594
Query: 376 ALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMKLKLSA 197
A+DD LDSL P+E V+R R+G++ K D TL E+ +++RE +R+ E KA+ KL +
Sbjct: 595 AIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPS 654
Query: 196 RLDYLRRYV 170
R D L+ ++
Sbjct: 655 RADRLKSFL 663
[198][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
audaxviator MP104C RepID=B1I1U1_DESAP
Length = 360
Score = 75.1 bits (183), Expect = 4e-12
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + IS ++ R++ K +Q +SL + E+ + ++D
Sbjct: 224 REPLPEEIAREMDISEDKVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAQAPAEEA 283
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR LDDVL +L +E V+R RFGLD RTL E+ ++RE +R+ E K L
Sbjct: 284 SFTLLREQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTL 343
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 344 RKLRHPSRSKKLKDYL 359
[199][TOP]
>UniRef100_B0BR67 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae
serovar 3 str. JL03 RepID=B0BR67_ACTPJ
Length = 619
Score = 75.1 bits (183), Expect = 4e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R T EE+ ER+ + ++ R V K ++ +S+ + ++ + + D L+
Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541
Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LRLA ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 602 RKLRHPSRSETLRSFL 617
[200][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 75.1 bits (183), Expect = 4e-12
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + +S E+ R++ K +Q +SL + E+ + + D
Sbjct: 236 RDPKPEEIAAEMDLSEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 295
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+LL+ L +VLD+L P+E V+R RFGLD RTL E+ +++RE +R+ E KAL
Sbjct: 296 AFSLLKEQLVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKAL 355
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ Y+
Sbjct: 356 RKLRHPSRSKKLKDYL 371
[201][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 75.1 bits (183), Expect = 4e-12
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + + + E+ R++ K +Q +SL + E+ + + D D+
Sbjct: 236 REPKPEEIAKEMDLPEEKVREILKIAQEPVSLETPIGEEEDSHLGDFIPD-----DDAPA 290
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VLD+L P+E V+R RFGLD RTL E+ +++RE +R+
Sbjct: 291 PAEAAAFSLLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQI 350
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 351 EAKALRKLRHPSRSKKLKDYL 371
[202][TOP]
>UniRef100_A3N2C3 RNA polymerase sigma factor n=1 Tax=Actinobacillus pleuropneumoniae
L20 RepID=A3N2C3_ACTP2
Length = 619
Score = 75.1 bits (183), Expect = 4e-12
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R T EE+ ER+ + ++ R V K ++ +S+ + ++ + + D L+
Sbjct: 482 REATPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSA 541
Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LRLA ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 542 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 601
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 602 RKLRHPSRSETLRSFL 617
[203][TOP]
>UniRef100_A1VMP0 RNA polymerase sigma factor n=1 Tax=Polaromonas naphthalenivorans CJ2
RepID=A1VMP0_POLNA
Length = 736
Score = 75.1 bits (183), Expect = 4e-12
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRRQP 392
P + E++ I E+ R + K ++ +S+ + ++ + ++DG
Sbjct: 600 PDASILAEKMEIPEEKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGANTAPLEAAMQ 659
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
A LR + D+LDSL P+E V+R RFG++ D TL E+ +++RE +R+ E KAL K
Sbjct: 660 AGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRK 719
Query: 211 LKLSARLDYLRRYV 170
LK +R D LR ++
Sbjct: 720 LKHPSRSDKLRSFI 733
[204][TOP]
>UniRef100_C9QCH3 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio orientalis CIP
102891 RepID=C9QCH3_VIBOR
Length = 618
Score = 75.1 bits (183), Expect = 4e-12
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ +
Sbjct: 481 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 540
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 541 TAGSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 600
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 601 RKLRHPSRSETLRSFL 616
[205][TOP]
>UniRef100_C9NN36 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio coralliilyticus
ATCC BAA-450 RepID=C9NN36_9VIBR
Length = 617
Score = 75.1 bits (183), Expect = 4e-12
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ +
Sbjct: 480 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 539
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 540 TSTSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 599
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 600 RKLRHPSRSETLRSFL 615
[206][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
Length = 392
Score = 75.1 bits (183), Expect = 4e-12
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
+ PT EE+ E++ + E+ + + + +Q +SL + + E+ + V+D +
Sbjct: 256 KEPTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDAT 315
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ LD+VL +L +E +V+R R+GLD +TL E+ N++RE +R+ EVKAL
Sbjct: 316 TRILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKAL 375
Query: 217 MKLKLSARLDYLRRY 173
KL+ +R L Y
Sbjct: 376 RKLRHPSRRKKLEDY 390
[207][TOP]
>UniRef100_C7MNW8 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Cryptobacterium
curtum DSM 15641 RepID=C7MNW8_CRYCD
Length = 422
Score = 75.1 bits (183), Expect = 4e-12
Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING--VVDDGGLDGDNR 401
R PT EEI E + ++P+R R++ K SQ +SL + I EE+ G + DD + +
Sbjct: 285 REPTPEEIAEEMDLTPDRVREIQKISQEPVSLETP-IGEEEDSQLGDFIEDDAAVVPPDA 343
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
++L+ L VLD L +E VI RFGL+ RTL E+ ++RE +R+ E K
Sbjct: 344 ASFSMLQEQLTKVLDGLAERERKVISLRFGLEDGHPRTLEEVGREFGVTRERIRQIESKT 403
Query: 220 LMKLKLSARLDYLRRYV 170
L KL+ +R L+ Y+
Sbjct: 404 LAKLRHPSRSSKLKDYL 420
[208][TOP]
>UniRef100_C6LFQ8 RNA polymerase sigma factor n=1 Tax=Bryantella formatexigens DSM
14469 RepID=C6LFQ8_9FIRM
Length = 374
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 1/137 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
R PT EE+ ER+++ R R+V K S+ +SL + ++ + + DD L +
Sbjct: 238 REPTPEEVAERLNVPVSRVREVLKISRDPVSLDTPIGEEDDSHLGDFIEDDSALSPSDSA 297
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++LR L L+SL +E V++ RFGL RTL E+ N++RE +R+ E KAL
Sbjct: 298 AFSMLREELGTALESLTDRERQVVQLRFGLIDGRARTLEEVGKEFNVTRERIRQIEAKAL 357
Query: 217 MKLKLSARLDYLRRYVV 167
KL+ +R L+ +++
Sbjct: 358 RKLRHPSRSKRLKDFLI 374
[209][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367
[210][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367
[211][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 231 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 290
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 291 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 350
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 351 RKLRHPSRSKRLKDFM 366
[212][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367
[213][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367
[214][TOP]
>UniRef100_B8KEK7 RNA polymerase sigma factor n=1 Tax=Vibrio parahaemolyticus 16
RepID=B8KEK7_VIBPA
Length = 620
Score = 75.1 bits (183), Expect = 4e-12
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+ +
Sbjct: 483 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 542
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 543 TAGSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 602
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 603 RKLRHPSRSETLRSFL 618
[215][TOP]
>UniRef100_B6FR93 RNA polymerase sigma factor n=1 Tax=Clostridium nexile DSM 1787
RepID=B6FR93_9CLOT
Length = 370
Score = 75.1 bits (183), Expect = 4e-12
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + ER R++ K SQ +SL + E+ + + D DN
Sbjct: 234 REPLPEEIAEELDMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 288
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VLD+L +E V+R RFG++ RTL E+ +++RE +R+
Sbjct: 289 PAEAAAATLLKEQLGEVLDTLTDREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQI 348
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 349 EAKALRKLRHPSRSRKLRDYL 369
[216][TOP]
>UniRef100_A7VCB7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. L2-50
RepID=A7VCB7_9CLOT
Length = 377
Score = 75.1 bits (183), Expect = 4e-12
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + + I ER R++ K SQ +SL + E+ + + D DN
Sbjct: 241 REPQPEEIADVMDIPVERVREILKISQEPVSLETPIGEEEDSHLGDFIPD-----DNMPV 295
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VLD+L +E V+ RFGL+ RTL E+ N++RE +R+
Sbjct: 296 PADAAAFTLLKEQLVEVLDTLTEREKKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQI 355
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R LR Y+
Sbjct: 356 EAKALRKLRHPSRSRKLRDYI 376
[217][TOP]
>UniRef100_A7K4C7 RNA polymerase sigma factor n=3 Tax=Vibrio RepID=A7K4C7_9VIBR
Length = 639
Score = 75.1 bits (183), Expect = 4e-12
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 502 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 561
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L++A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 562 TATSLKVATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 621
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 622 RKLRHPSRSETLRSFL 637
[218][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 75.1 bits (183), Expect = 4e-12
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI + +S E+ R++ K +Q +SL + ++ + ++D L +
Sbjct: 241 REPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAA 300
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 301 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 361 RKLRHPSRSKRLKDFL 376
[219][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 75.1 bits (183), Expect = 4e-12
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI E + + PE+ R++ K +Q +SL + ++ + ++D +
Sbjct: 232 RDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHA 291
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 292 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 351
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 352 RKLRHPSRSKRLKDFM 367
[220][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 74.7 bits (182), Expect = 5e-12
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDG-GLDGDNRR 398
R PT EEI + + +S ++ R++ K +Q +SL + ++ + ++D L +
Sbjct: 239 REPTPEEIAKEMELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAA 298
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L+DVLD+L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 299 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 358
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 359 RKLRHPSRSKRLKDFL 374
[221][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 74.7 bits (182), Expect = 5e-12
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R PT EEI + + IS ++ R++ K +Q +SL + E+ + V+D
Sbjct: 234 REPTPEEIAKEMGISEDKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEA 293
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR LD+VL +L +E V+R RFGLD RTL E+ ++RE +R+ E KAL
Sbjct: 294 SYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKAL 353
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 354 RKLRHPSRSKKLKDFL 369
[222][TOP]
>UniRef100_Q0VMT7 RNA polymerase sigma factor n=1 Tax=Alcanivorax borkumensis SK2
RepID=Q0VMT7_ALCBS
Length = 633
Score = 74.7 bits (182), Expect = 5e-12
Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EE+ R+ + ++ R V K ++ +S+ + E+ + ++DG ++
Sbjct: 494 REPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNMESPVDSA 553
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+L L A DVL +L +E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 554 TSLGLEEATRDVLANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 613
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R ++LR ++
Sbjct: 614 RKLRHPSRSEHLRSFL 629
[223][TOP]
>UniRef100_C4K493 RNA polymerase sigma factor n=1 Tax=Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum) RepID=C4K493_HAMD5
Length = 610
Score = 74.7 bits (182), Expect = 5e-12
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R P EE+ ER+ + E+ R V K ++ +S+ + ++ + ++D L+ +
Sbjct: 473 REPAPEELAERMLMPEEKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDTTLELPLDSA 532
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LRLA +DVL L +E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 533 TSESLRLATNDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 592
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R D L+ ++
Sbjct: 593 RKLRHPSRSDVLKSFL 608
[224][TOP]
>UniRef100_A9KI23 RNA polymerase sigma factor n=1 Tax=Clostridium phytofermentans
ISDg RepID=A9KI23_CLOPH
Length = 372
Score = 74.7 bits (182), Expect = 5e-12
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ + ++I ER R++ K SQ +SL + E+ + + D DN
Sbjct: 236 REPFPEEVAKEMNIPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQD-----DNVPV 290
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LL+ L +VL +L +E V+R RFGLD RTL E+ N++RE +R+
Sbjct: 291 PAEAAAFTLLKEQLMEVLGTLTDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQI 350
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E KAL KL+ +R L+ Y+
Sbjct: 351 EAKALRKLRHPSRSRKLKDYL 371
[225][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 74.7 bits (182), Expect = 5e-12
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P+ EEI + ++I+ ++ R++ K +Q +SL + E+ + ++D R
Sbjct: 227 RDPSPEEIAKEMNITEDKVREILKIAQEPVSLETPIGEEEDSHLGDFIED-----HEARA 281
Query: 394 PA------LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKH 233
PA LLR LD+VL +L +E V+R RFGLD RTL E+ ++RE +R+
Sbjct: 282 PAEEASFTLLREQLDEVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQI 341
Query: 232 EVKALMKLKLSARLDYLRRYV 170
E K L KL+ +R L+ Y+
Sbjct: 342 EAKTLRKLRHPSRSKKLKDYL 362
[226][TOP]
>UniRef100_Q1K285 RNA polymerase sigma factor n=1 Tax=Desulfuromonas acetoxidans DSM
684 RepID=Q1K285_DESAC
Length = 583
Score = 74.7 bits (182), Expect = 5e-12
Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI ER+ + E+ R V K ++ +SL + E+ + ++D G
Sbjct: 445 REPIPEEIAERMDLPLEKVRRVLKIAKEPISLETPIGEEEDSSLGDFIEDKGAVSPLE-- 502
Query: 394 PALLRLALDD----VLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEV 227
A+++ L D VL +L P+E V+R RFG+ + D TL E+ + N++RE +R+ E
Sbjct: 503 -AVIKGNLSDQTAEVLSTLSPREEKVLRMRFGIGERSDHTLEEVGQDFNVTRERIRQIEA 561
Query: 226 KALMKLKLSARLDYLRRYV 170
KAL KL+ +R LR +V
Sbjct: 562 KALRKLRHPSRAKRLRSFV 580
[227][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
Length = 357
Score = 74.7 bits (182), Expect = 5e-12
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EEI + + +S ++ R++ K +Q +SL + E+ + + D
Sbjct: 221 RDPLPEEIAKEMDMSVDKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPAEAA 280
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+L+ L DVLD+L P+E V+R RFGLD RTL E+ N++RE +R+ E KAL
Sbjct: 281 AFTMLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKAL 340
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R L+ ++
Sbjct: 341 RKLRHPSRSKKLKDFL 356
[228][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 74.7 bits (182), Expect = 5e-12
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P +EI ++IS ER R++ K +Q +SL + ++ + ++D +
Sbjct: 236 REPAPDEIAHVMNISEERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDVQAPAEAA 295
Query: 394 P-ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ LDDVL++L P+E V+ RFGL+ RTL E+ ++RE +R+ E KAL
Sbjct: 296 AFELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKAL 355
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 356 RKLRHPMRSKRLKDYL 371
[229][TOP]
>UniRef100_B8KQ57 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR5-3
RepID=B8KQ57_9GAMM
Length = 607
Score = 74.7 bits (182), Expect = 5e-12
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG--DNR 401
R PT EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D ++ D
Sbjct: 468 REPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQTINSPIDAA 527
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
L+ A DVL L +E V+R RFG+D D TL E+ +++RE +R+ E KA
Sbjct: 528 TGQGLME-ATKDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 586
Query: 220 LMKLKLSARLDYLRRYV 170
L KL+ R DYLR ++
Sbjct: 587 LRKLRHPTRSDYLRSFL 603
[230][TOP]
>UniRef100_B7RVL8 RNA polymerase sigma factor n=1 Tax=marine gamma proteobacterium
HTCC2148 RepID=B7RVL8_9GAMM
Length = 605
Score = 74.7 bits (182), Expect = 5e-12
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGD-NRR 398
R PT EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D + +
Sbjct: 468 REPTPEELGERMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTISSPVDSA 527
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
L+ A DVL L +E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 528 TGQGLQEATKDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 587
Query: 217 MKLKLSARLDYLRRYV 170
KL+ R DYLR ++
Sbjct: 588 RKLRHPTRSDYLRSFL 603
[231][TOP]
>UniRef100_B4WX76 RNA polymerase sigma factor n=1 Tax=Alcanivorax sp. DG881
RepID=B4WX76_9GAMM
Length = 633
Score = 74.7 bits (182), Expect = 5e-12
Identities = 43/136 (31%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PT EE+ R+ + ++ R V K ++ +S+ + E+ + ++DG ++
Sbjct: 494 REPTPEELGVRLEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDGNMESPVDSA 553
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
+L L A DVL +L +E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 554 TSLGLEEATRDVLANLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 613
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R ++LR ++
Sbjct: 614 RKLRHPSRSEHLRSFL 629
[232][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
caldarium RepID=Q39515_CYACA
Length = 591
Score = 74.7 bits (182), Expect = 5e-12
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 3/138 (2%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING---VVDDGGLDGDN 404
RPP+EEEI E V I +YR V + S+ I+SL + + ++ G + + + +
Sbjct: 453 RPPSEEEICESVGIDRAKYRLVMECSRNIVSLETPLRSGDDVHFLGESLIAPEERAEENC 512
Query: 403 RRQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVK 224
R LR +++ VL L +E VIR RFGL RTL E+ S N++RE +R+ E K
Sbjct: 513 SRDT--LRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFNVTRERIRQIESK 570
Query: 223 ALMKLKLSARLDYLRRYV 170
AL KL+ A ++L Y+
Sbjct: 571 ALKKLRTPAENNFLDEYL 588
[233][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 74.7 bits (182), Expect = 5e-12
Identities = 47/136 (34%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFING-VVDDGGLDGDNRR 398
R PT EEI E + ++ E+ + KAS +SL + + +VDD D+
Sbjct: 434 RDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDAT 493
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LL+ L++VL++L P+E V+R R+G+D +TL EI + +++RE +R+ E KAL
Sbjct: 494 GKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKAL 553
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R LR Y+
Sbjct: 554 RKLRQPSRNGILREYL 569
[234][TOP]
>UniRef100_Q82XM8 RNA polymerase sigma factor n=1 Tax=Nitrosomonas europaea
RepID=Q82XM8_NITEU
Length = 751
Score = 74.3 bits (181), Expect = 6e-12
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGG-LDGDNRRQP 392
P + E++ + E+ R + K S+ +S+ + E+ + ++D ++ +
Sbjct: 613 PEPAVLAEKMEMPEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDASTMEPADAAVY 672
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALMK 212
A LR DVLDSL P+E V+R RFG++ D TL E+ +++RE +R+ E KAL K
Sbjct: 673 AGLRTVTKDVLDSLTPREAKVLRMRFGIEMNTDHTLEEVGRQFDVTRERIRQIEAKALRK 732
Query: 211 LKLSARLDYLRRYV 170
L+ AR D LR ++
Sbjct: 733 LRHPARSDRLRSFL 746
[235][TOP]
>UniRef100_Q7VN82 RNA polymerase sigma factor n=1 Tax=Haemophilus ducreyi
RepID=Q7VN82_HAEDU
Length = 613
Score = 74.3 bits (181), Expect = 6e-12
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R T EE+ ER+ + ++ R V K ++ +S+ + I ++ + + D L+
Sbjct: 477 REATPEELAERMGMPEDKIRKVLKIAKEPISMETP-IGDDDSHLGDFIQDENLELPLDSA 535
Query: 394 PA-LLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A LRLA ++VL+ L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 536 TAESLRLATNEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 595
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 596 RKLRHPSRSETLRSFL 611
[236][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 74.3 bits (181), Expect = 6e-12
Identities = 46/135 (34%), Positives = 74/135 (54%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI E + ++ E+ R + K++Q +SL + E+ + ++ + +
Sbjct: 326 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTENPEQDVA 385
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL +L P+E V+R R+GLD +TL EI ++RE +R+ E KAL
Sbjct: 386 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 445
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 446 KLRHPNRNGVLKEYI 460
[237][TOP]
>UniRef100_Q7MP03 RNA polymerase sigma factor n=2 Tax=Vibrio vulnificus
RepID=Q7MP03_VIBVY
Length = 643
Score = 74.3 bits (181), Expect = 6e-12
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 506 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 565
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 566 TATSLKAATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 625
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 626 RKLRHPSRSETLRSFL 641
[238][TOP]
>UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359
RepID=B9K8D5_THENN
Length = 392
Score = 74.3 bits (181), Expect = 6e-12
Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392
P+ EE+ + + PE+ +++ +A++ +SL S E+ I V D + +
Sbjct: 251 PSVEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADESVPSPKKEAMR 310
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
L+R L+ VL +L P+E +V+R R+G LDGK +TL E+ N++RE +R+ EVKAL
Sbjct: 311 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 369
Query: 214 KLKLSARLDYLR 179
KL+ +R YL+
Sbjct: 370 KLRHPSRSKYLK 381
[239][TOP]
>UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1
Length = 407
Score = 74.3 bits (181), Expect = 6e-12
Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392
P+ EE+ + + PE+ +++ +A++ +SL S E+ I V D + +
Sbjct: 266 PSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMR 325
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
L+R L+ VL +L P+E +V+R R+G LDGK +TL E+ N++RE +R+ EVKAL
Sbjct: 326 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 384
Query: 214 KLKLSARLDYLR 179
KL+ +R YL+
Sbjct: 385 KLRHPSRSKYLK 396
[240][TOP]
>UniRef100_A5F9E3 RNA polymerase sigma factor n=1 Tax=Vibrio cholerae O395
RepID=A5F9E3_VIBC3
Length = 621
Score = 74.3 bits (181), Expect = 6e-12
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 484 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 543
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 544 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 603
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 604 RKLRHPSRSEVLRSFL 619
[241][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 74.3 bits (181), Expect = 6e-12
Identities = 46/135 (34%), Positives = 74/135 (54%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R PTEEEI E + ++ E+ R + K++Q +SL + E+ + ++ + +
Sbjct: 309 RKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTENPEQDVA 368
Query: 394 PALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
LLR L+ VL +L P+E V+R R+GLD +TL EI ++RE +R+ E KAL
Sbjct: 369 KNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALR 428
Query: 214 KLKLSARLDYLRRYV 170
KL+ R L+ Y+
Sbjct: 429 KLRHPNRNGVLKEYI 443
[242][TOP]
>UniRef100_C9Q2J8 RNA polymerase sigma factor RpoD n=1 Tax=Vibrio sp. RC341
RepID=C9Q2J8_9VIBR
Length = 628
Score = 74.3 bits (181), Expect = 6e-12
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 491 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 550
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 551 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 610
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 611 RKLRHPSRSEVLRSFL 626
[243][TOP]
>UniRef100_C7IAE0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Thermotoga
naphthophila RKU-10 RepID=C7IAE0_9THEM
Length = 407
Score = 74.3 bits (181), Expect = 6e-12
Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Frame = -2
Query: 568 PTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR-QP 392
P+ EE+ + + PE+ +++ +A++ +SL S E+ I V D + +
Sbjct: 266 PSIEELAKMMGKPPEKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMR 325
Query: 391 ALLRLALDDVLDSLKPKENLVIRQRFG-LDGKGDRTLGEIASNLNISREMVRKHEVKALM 215
L+R L+ VL +L P+E +V+R R+G LDGK +TL E+ N++RE +R+ EVKAL
Sbjct: 326 MLMREELEKVLKTLSPREAMVLRMRYGLLDGK-PKTLEEVGQYFNVTRERIRQIEVKALR 384
Query: 214 KLKLSARLDYLR 179
KL+ +R YL+
Sbjct: 385 KLRHPSRSKYLK 396
[244][TOP]
>UniRef100_C7HUH1 RNA polymerase sigma factor RpoD n=1 Tax=Anaerococcus vaginalis
ATCC 51170 RepID=C7HUH1_9FIRM
Length = 614
Score = 74.3 bits (181), Expect = 6e-12
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
R P+ EEI E++ I E+ +++ K +Q +SL + E+ + + DD ++ D+
Sbjct: 479 RDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAA 538
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++LR L+DVL L +E V++ RFGL RTL E+ +++RE +R+ E KAL
Sbjct: 539 NYSMLRDQLNDVLSCLGAREKRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKAL 598
Query: 217 MKLKLSARLDYLRRYV 170
KLK + + L+ ++
Sbjct: 599 RKLKSPNKSELLKDFL 614
[245][TOP]
>UniRef100_C2HU05 RNA polymerase sigma factor n=1 Tax=Vibrio cholerae bv. albensis
VL426 RepID=C2HU05_VIBCH
Length = 642
Score = 74.3 bits (181), Expect = 6e-12
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 505 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 564
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 565 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 624
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 625 RKLRHPSRSEVLRSFL 640
[246][TOP]
>UniRef100_C3NW56 RNA polymerase sigma factor n=17 Tax=Vibrio cholerae
RepID=C3NW56_VIBCJ
Length = 642
Score = 74.3 bits (181), Expect = 6e-12
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRRQ 395
R P EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D L+
Sbjct: 505 REPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSA 564
Query: 394 PAL-LRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
A L+ A DVL L P+E V+R RFG+D D TL E+ +++RE +R+ E KAL
Sbjct: 565 TATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL 624
Query: 217 MKLKLSARLDYLRRYV 170
KL+ +R + LR ++
Sbjct: 625 RKLRHPSRSEVLRSFL 640
[247][TOP]
>UniRef100_B8KVX1 RNA polymerase sigma factor n=1 Tax=gamma proteobacterium NOR51-B
RepID=B8KVX1_9GAMM
Length = 603
Score = 74.3 bits (181), Expect = 6e-12
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDG--DNR 401
R PT EE+ ER+ + ++ R V K ++ +S+ + E+ + ++D + D+
Sbjct: 466 REPTPEELGERMEMPEDKVRKVLKIAKEPISMETPIGDDEDSSLGDFIEDVTIASPVDSA 525
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
+ L A DVL L +E V+R RFG+D D TL E+ +++RE +R+ E KA
Sbjct: 526 TEEGLTE-ATTDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 584
Query: 220 LMKLKLSARLDYLRRYV 170
L KL+ R DYLR ++
Sbjct: 585 LRKLRHPTRSDYLRSFL 601
[248][TOP]
>UniRef100_B6WAP8 RNA polymerase sigma factor n=1 Tax=Anaerococcus hydrogenalis DSM
7454 RepID=B6WAP8_9FIRM
Length = 617
Score = 74.3 bits (181), Expect = 6e-12
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVV-DDGGLDGDNRR 398
R P+ EEI E++ I E+ +++ K +Q +SL + E+ + + DD ++ D+
Sbjct: 482 RDPSNEEIAEQMGIEVEKVQEIRKIAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAA 541
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
++LR L+DVL L +E V++ RFGL RTL E+ +++RE +R+ E KAL
Sbjct: 542 NYSMLRDQLNDVLSCLGAREKRVLQLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKAL 601
Query: 217 MKLKLSARLDYLRRYV 170
KLK + + L+ ++
Sbjct: 602 RKLKSPNKSELLKDFL 617
[249][TOP]
>UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM
Length = 417
Score = 74.3 bits (181), Expect = 6e-12
Identities = 46/137 (33%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Frame = -2
Query: 574 RPPTEEEIIERVH-ISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDD-GGLDGDNR 401
R P+ EEI E++ ++PE+ R++ K S +SL + ++ + ++D G + D+
Sbjct: 279 REPSAEEIAEKMDGMTPEKVREIQKISLEPVSLETPIGEEDDSHLGDFIEDEGAMSPDDY 338
Query: 400 RQPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKA 221
LL+ L++VL L +E V+R RFGLD RTL E+ +++RE +R+ E KA
Sbjct: 339 AANELLKDELNEVLLELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKA 398
Query: 220 LMKLKLSARLDYLRRYV 170
L KLK +R L+ ++
Sbjct: 399 LRKLKHPSRSKRLKDFL 415
[250][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UQQ5_9AQUI
Length = 571
Score = 74.3 bits (181), Expect = 6e-12
Identities = 42/135 (31%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Frame = -2
Query: 574 RPPTEEEIIERVHISPERYRDVTKASQPILSLHSRHITTEEEFINGVVDDGGLDGDNRR- 398
R PT EEI + + ++P++ R V +++Q +SL + E+ F+ ++D +
Sbjct: 435 REPTPEEIAKHLGMTPDKVRKVLRSAQEPISLETPIGDDEDTFLKDFIEDKSVPNPEEYV 494
Query: 397 QPALLRLALDDVLDSLKPKENLVIRQRFGLDGKGDRTLGEIASNLNISREMVRKHEVKAL 218
LLR L+ VL++L KE ++R R+GL + TL ++ N++RE +R+ E KA+
Sbjct: 495 SRKLLREQLERVLETLSDKEREILRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAI 554
Query: 217 MKLKLSARLDYLRRY 173
KL+ +R YL+ +
Sbjct: 555 RKLRHPSRAKYLKDF 569