BB916912 ( RCE22412 )

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[1][TOP]
>UniRef100_B9RRM2 Ribosomal large subunit pseudouridine synthase B, putative n=1
           Tax=Ricinus communis RepID=B9RRM2_RICCO
          Length = 315

 Score =  166 bits (419), Expect = 2e-39
 Identities = 104/196 (53%), Positives = 127/196 (64%), Gaps = 9/196 (4%)
 Frame = +1

Query: 19  MGSAATMAAMTV---LCFTK-SNKLTSTFRTLPRLTCSSLSNSP---FKFNISFSPSNPK 177
           MGS A ++++     L F+K S  L    R+LPR+TCSS S+S     +FNISF+P    
Sbjct: 1   MGSVAALSSLHSIQNLIFSKPSVALLKPIRSLPRITCSSSSSSSSSSLEFNISFAP---- 56

Query: 178 PKPDPKPKPEPE-NDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT-GTKKSDK 351
           PKP PK  P+ + +D +G L IPWIVRGEDGN KL S PP   +  +A AKT  TKK +K
Sbjct: 57  PKPKPKSPPQLDLSDQEGQLFIPWIVRGEDGNLKLQSHPPARLIHALADAKTHNTKKQNK 116

Query: 352 IQTTKIKKKTEKETKVRAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCE 531
           +      KK        AV     SKAARRFYNENF++   +RLSKVLAASGVASRR+ E
Sbjct: 117 V------KKVAAAAPTPAVKDRHLSKAARRFYNENFREPP-QRLSKVLAASGVASRRNSE 169

Query: 532 ELILEGKVTVNGSVCN 579
           ELI +GKVTVNGSVCN
Sbjct: 170 ELIFQGKVTVNGSVCN 185

[2][TOP]
>UniRef100_A7PI03 Chromosome chr13 scaffold_17, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PI03_VITVI
          Length = 393

 Score =  152 bits (385), Expect = 1e-35
 Identities = 92/186 (49%), Positives = 120/186 (64%), Gaps = 2/186 (1%)
 Frame = +1

Query: 28  AATMAAMTVLCFTKSNKLTSTFRTLP-RLTCSSLSNSPFKFNISFSPSNPKPKPDPKPKP 204
           AA  AA +    ++ +     FRT+P R + S  S +  +FNISF+P +  PKP  +   
Sbjct: 13  AAASAAFSSFHLSRPSLARRHFRTIPVRSSISPPSTTSAEFNISFAPKSKNPKPQSET-- 70

Query: 205 EPENDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTE 384
                    L+IPWIVR E+GN ++ S PP  +L+DMA AK  + K         KKK +
Sbjct: 71  ---------LLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAK---------KKKKK 112

Query: 385 KETKVRAVA-QPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTV 561
           +E+  RAVA +P+YSKAARRFYNENF+D   +RLSKVLAA+GVASRR+ EELI EG+VTV
Sbjct: 113 EESTARAVAVEPKYSKAARRFYNENFRDPP-QRLSKVLAAAGVASRRNSEELIFEGRVTV 171

Query: 562 NGSVCN 579
           NGSVCN
Sbjct: 172 NGSVCN 177

[3][TOP]
>UniRef100_B9HLH3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HLH3_POPTR
          Length = 397

 Score =  147 bits (371), Expect = 6e-34
 Identities = 88/172 (51%), Positives = 107/172 (62%), Gaps = 8/172 (4%)
 Frame = +1

Query: 88  TFRTLPRLTCSSLSNSP------FKFNISFSPSNPKPKPDPKPKPEPENDD--DGPLMIP 243
           TF   P L+  + S  P       +FNI+F+P  PKPK     + +  +     G L IP
Sbjct: 15  TFFRKPSLSLLNKSIRPTRITASLEFNITFAPPKPKPKLPANLQTDAASLSLPPGQLFIP 74

Query: 244 WIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTEKETKVRAVAQPQY 423
           WIVRGEDGN KL S PP   +  +A AKT  KK    +  K+KK++    K +  A+P  
Sbjct: 75  WIVRGEDGNLKLQSNPPARLIHAIADAKTQPKK----KKDKVKKESSGNVKAKLEAEPTR 130

Query: 424 SKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVCN 579
           SKAARRFYNENF+D   +RLSKVLAA+GVASRRS E LI EGKVTVNGSVCN
Sbjct: 131 SKAARRFYNENFRDQA-QRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCN 181

[4][TOP]
>UniRef100_Q10RN1 Os03g0152700 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q10RN1_ORYSJ
          Length = 415

 Score =  136 bits (343), Expect = 1e-30
 Identities = 81/174 (46%), Positives = 105/174 (60%), Gaps = 15/174 (8%)
 Frame = +1

Query: 100 LPRLTCSSLSNSPFKFNISFS----PSNPKPKPDPKPKPEPENDDDGPLMIPWIVRGEDG 267
           L R   SS S++P  FNI+F+    P+  KPKP   P P  E       ++PWIVRGEDG
Sbjct: 41  LLRAASSSTSSAP-DFNITFAEPTAPAPSKPKPS-SPAPSAEQ------VVPWIVRGEDG 92

Query: 268 NFKLSSEPPPSFLKDMAIAKTGTKKSDK-----------IQTTKIKKKTEKETKVRAVAQ 414
              + + PPP  L+ +A+A+   KK+ K           + T     K  +     A A 
Sbjct: 93  KPSMRTAPPPDVLQAIALAEAEAKKAKKDPRRSHKGAAALATPVANAKVRERKAAPATAP 152

Query: 415 PQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVC 576
           P++SKAARRFYNEN K+   +RL+KVLAA+GVASRR+CEELI +GKVTVNGSVC
Sbjct: 153 PKFSKAARRFYNENIKEHEPQRLAKVLAAAGVASRRTCEELIFQGKVTVNGSVC 206

[5][TOP]
>UniRef100_Q8L960 Putative uncharacterized protein n=1 Tax=Arabidopsis thaliana
           RepID=Q8L960_ARATH
          Length = 410

 Score =  132 bits (333), Expect = 1e-29
 Identities = 88/202 (43%), Positives = 115/202 (56%), Gaps = 19/202 (9%)
 Frame = +1

Query: 31  ATMAAMTVLCFTKSNKLTSTFRTLPR------LTCS--SLSNSPFKFNISFSPSNPKPKP 186
           A++AA + + F  S      F   PR      L CS  S S+ P +F+ISF+P       
Sbjct: 2   ASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSVSSSSSEPIEFDISFAP------- 54

Query: 187 DPKPKPEPENDDDGP--LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT--GTKKSDKI 354
            PKPKP   +    P  L IPWIVR +DG  KL S+PP   + ++AI  T    KK DK 
Sbjct: 55  -PKPKPSSTHGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKS 113

Query: 355 QTTKIKKKTEKETKVRAVA-------QPQYSKAARRFYNENFKDSGGERLSKVLAASGVA 513
           +  + +  +       A +       +P+ SKAARRFYNENFK+   +RLSKVLAA+GVA
Sbjct: 114 KKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQP-QRLSKVLAAAGVA 172

Query: 514 SRRSCEELILEGKVTVNGSVCN 579
           SRR+ EELI +GKVTVNG +CN
Sbjct: 173 SRRTSEELIFDGKVTVNGILCN 194

[6][TOP]
>UniRef100_O80967 Putative uncharacterized protein At2g39140 n=1 Tax=Arabidopsis
           thaliana RepID=O80967_ARATH
          Length = 303

 Score =  132 bits (333), Expect = 1e-29
 Identities = 88/202 (43%), Positives = 115/202 (56%), Gaps = 19/202 (9%)
 Frame = +1

Query: 31  ATMAAMTVLCFTKSNKLTSTFRTLPR------LTCS--SLSNSPFKFNISFSPSNPKPKP 186
           A++AA + + F  S      F   PR      L CS  S S+ P +F+ISF+P       
Sbjct: 2   ASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSVSSSSSEPIEFDISFAP------- 54

Query: 187 DPKPKPEPENDDDGP--LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT--GTKKSDKI 354
            PKPKP   +    P  L IPWIVR +DG  KL S+PP   + ++AI  T    KK DK 
Sbjct: 55  -PKPKPSSTHGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKS 113

Query: 355 QTTKIKKKTEKETKVRAVA-------QPQYSKAARRFYNENFKDSGGERLSKVLAASGVA 513
           +  + +  +       A +       +P+ SKAARRFYNENFK+   +RLSKVLAA+GVA
Sbjct: 114 KKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQP-QRLSKVLAAAGVA 172

Query: 514 SRRSCEELILEGKVTVNGSVCN 579
           SRR+ EELI +GKVTVNG +CN
Sbjct: 173 SRRTSEELIFDGKVTVNGILCN 194

[7][TOP]
>UniRef100_C5WXU8 Putative uncharacterized protein Sb01g046770 n=1 Tax=Sorghum
           bicolor RepID=C5WXU8_SORBI
          Length = 407

 Score =  131 bits (330), Expect = 3e-29
 Identities = 78/172 (45%), Positives = 104/172 (60%), Gaps = 13/172 (7%)
 Frame = +1

Query: 100 LPRLTCSSLSNSPFKFNISFSPSNPKPKPDPKPKPEPENDDDGPLMIPWIVRGEDGNFKL 279
           L R T S+ +++   FNI+F+   P  K    P  +P        ++PWIVRGEDG  +L
Sbjct: 31  LLRATSSTSTSASPDFNITFAEPAPSKKA---PSAQP--------LVPWIVRGEDGKPRL 79

Query: 280 SSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKK-------------KTEKETKVRAVAQPQ 420
           S+ PPP  L+ +A+A+   KK+ K +T K  K              + K  K    A P+
Sbjct: 80  STSPPPDVLQAIALAEAEAKKAAKKETLKGPKGAVAAAAAAAASNASVKARKAAPTAPPK 139

Query: 421 YSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVC 576
           +SKAARRFYNEN K+   +RL+KVLAA+GVASRR+ EELI +GKVTVNGSVC
Sbjct: 140 FSKAARRFYNENIKEREPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVC 191

[8][TOP]
>UniRef100_B6U7U0 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Zea mays
           RepID=B6U7U0_MAIZE
          Length = 406

 Score =  129 bits (324), Expect = 2e-28
 Identities = 85/199 (42%), Positives = 110/199 (55%), Gaps = 17/199 (8%)
 Frame = +1

Query: 31  ATMAAMTVLCFTKSNKLTSTFRTLPRL---TCSSLSNSPFKFNISFSPSNPKPKPDPKPK 201
           AT A    L  T+   +    R LP L     SS S SP  FNI+F+   P  K    P 
Sbjct: 4   ATTAVSLHLFLTRPASVLRVGRGLPCLLLRATSSTSASP-DFNITFAEPAPSKKA---PS 59

Query: 202 PEPENDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKT 381
            +P        ++PWIVRGEDG  +LS+ PPP  ++ +A+A+   KK+ K +T K +   
Sbjct: 60  AQP--------LVPWIVRGEDGKPRLSTSPPPDVIQAIALAEAEAKKAAKKETLKGQNGA 111

Query: 382 E--------------KETKVRAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASR 519
                          KE K      P++SKAARRFYNEN K+   +RL+KVLAA+GVASR
Sbjct: 112 VAAAAAAASNASVKGKERKPAPTVPPKFSKAARRFYNENIKEREPQRLAKVLAAAGVASR 171

Query: 520 RSCEELILEGKVTVNGSVC 576
           R+ EELI +GK TVNGSVC
Sbjct: 172 RTSEELIFQGKXTVNGSVC 190

[9][TOP]
>UniRef100_B9HUJ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HUJ1_POPTR
          Length = 205

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 47/92 (51%), Positives = 60/92 (65%)
 Frame = +1

Query: 232 LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTEKETKVRAVA 411
           L IP I+RGEDGN KL S  P   L  +  AKT  KK  KI+  +++K +    K +   
Sbjct: 34  LFIPRIIRGEDGNLKLHSHHPERSLHALTDAKTQPKK--KIE--EVRKGSGGNAKTKLEV 89

Query: 412 QPQYSKAARRFYNENFKDSGGERLSKVLAASG 507
           +P+ SKAARRFYNENF+D   +RLSKVLAA+G
Sbjct: 90  EPRRSKAARRFYNENFRDQ-AQRLSKVLAAAG 120

[10][TOP]
>UniRef100_A9SG51 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SG51_PHYPA
          Length = 560

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
 Frame = +1

Query: 361 TKIKKKTEKETKV-----RAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRS 525
           +K K KTE  +++     ++ A P+YSKAARRFYNE ++ +  ERLSKVLAA+GVASRR 
Sbjct: 200 SKRKAKTEPASRISVGVKKSGAVPKYSKAARRFYNETYR-AECERLSKVLAAAGVASRRG 258

Query: 526 CEELILEGKVTVNGSVC 576
            E++I  G+V VNG VC
Sbjct: 259 SEDIIFAGRVKVNGKVC 275

[11][TOP]
>UniRef100_UPI000190651D probable RNA-pseudouridine synthase protein, ribosomal large
           subunit B n=1 Tax=Rhizobium etli Kim 5
           RepID=UPI000190651D
          Length = 153

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 28/55 (50%), Positives = 38/55 (69%)
 Frame = +1

Query: 409 AQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSV 573
           A+P  + AAR    E   D+  ER+SKV+A +GVASRR  E +I+EG+VT+NG V
Sbjct: 30  AKPAKAAAARPTAPETESDAKAERISKVMARAGVASRRDIERMIMEGRVTLNGRV 84

[12][TOP]
>UniRef100_B5H2A5 Pseudouridine synthase n=1 Tax=Streptomyces clavuligerus ATCC 27064
           RepID=B5H2A5_STRCL
          Length = 376

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
 Frame = +1

Query: 322 AKTGTKKSDKIQT-----TKIKKKTEKETKVRAVAQPQYSKAARRFYNENFKDSGGERLS 486
           AK G K+S   Q      T   +  E + +     + +Y+        + F +  GERL 
Sbjct: 84  AKGGPKQSQSPQRGRGGRTAPARSREYDARAEERNRERYANRPEIKTPKTFGEQEGERLQ 143

Query: 487 KVLAASGVASRRSCEELILEGKVTVNGSV 573
           KVLA +GV SRR+CEELI  G+V VNGS+
Sbjct: 144 KVLARAGVGSRRACEELIEAGRVEVNGSI 172