[UP]
[1][TOP] >UniRef100_B9RRM2 Ribosomal large subunit pseudouridine synthase B, putative n=1 Tax=Ricinus communis RepID=B9RRM2_RICCO Length = 315 Score = 166 bits (419), Expect = 2e-39 Identities = 104/196 (53%), Positives = 127/196 (64%), Gaps = 9/196 (4%) Frame = +1 Query: 19 MGSAATMAAMTV---LCFTK-SNKLTSTFRTLPRLTCSSLSNSP---FKFNISFSPSNPK 177 MGS A ++++ L F+K S L R+LPR+TCSS S+S +FNISF+P Sbjct: 1 MGSVAALSSLHSIQNLIFSKPSVALLKPIRSLPRITCSSSSSSSSSSLEFNISFAP---- 56 Query: 178 PKPDPKPKPEPE-NDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT-GTKKSDK 351 PKP PK P+ + +D +G L IPWIVRGEDGN KL S PP + +A AKT TKK +K Sbjct: 57 PKPKPKSPPQLDLSDQEGQLFIPWIVRGEDGNLKLQSHPPARLIHALADAKTHNTKKQNK 116 Query: 352 IQTTKIKKKTEKETKVRAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCE 531 + KK AV SKAARRFYNENF++ +RLSKVLAASGVASRR+ E Sbjct: 117 V------KKVAAAAPTPAVKDRHLSKAARRFYNENFREPP-QRLSKVLAASGVASRRNSE 169 Query: 532 ELILEGKVTVNGSVCN 579 ELI +GKVTVNGSVCN Sbjct: 170 ELIFQGKVTVNGSVCN 185 [2][TOP] >UniRef100_A7PI03 Chromosome chr13 scaffold_17, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PI03_VITVI Length = 393 Score = 152 bits (385), Expect = 1e-35 Identities = 92/186 (49%), Positives = 120/186 (64%), Gaps = 2/186 (1%) Frame = +1 Query: 28 AATMAAMTVLCFTKSNKLTSTFRTLP-RLTCSSLSNSPFKFNISFSPSNPKPKPDPKPKP 204 AA AA + ++ + FRT+P R + S S + +FNISF+P + PKP + Sbjct: 13 AAASAAFSSFHLSRPSLARRHFRTIPVRSSISPPSTTSAEFNISFAPKSKNPKPQSET-- 70 Query: 205 EPENDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTE 384 L+IPWIVR E+GN ++ S PP +L+DMA AK + K KKK + Sbjct: 71 ---------LLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAK---------KKKKK 112 Query: 385 KETKVRAVA-QPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTV 561 +E+ RAVA +P+YSKAARRFYNENF+D +RLSKVLAA+GVASRR+ EELI EG+VTV Sbjct: 113 EESTARAVAVEPKYSKAARRFYNENFRDPP-QRLSKVLAAAGVASRRNSEELIFEGRVTV 171 Query: 562 NGSVCN 579 NGSVCN Sbjct: 172 NGSVCN 177 [3][TOP] >UniRef100_B9HLH3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HLH3_POPTR Length = 397 Score = 147 bits (371), Expect = 6e-34 Identities = 88/172 (51%), Positives = 107/172 (62%), Gaps = 8/172 (4%) Frame = +1 Query: 88 TFRTLPRLTCSSLSNSP------FKFNISFSPSNPKPKPDPKPKPEPENDD--DGPLMIP 243 TF P L+ + S P +FNI+F+P PKPK + + + G L IP Sbjct: 15 TFFRKPSLSLLNKSIRPTRITASLEFNITFAPPKPKPKLPANLQTDAASLSLPPGQLFIP 74 Query: 244 WIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTEKETKVRAVAQPQY 423 WIVRGEDGN KL S PP + +A AKT KK + K+KK++ K + A+P Sbjct: 75 WIVRGEDGNLKLQSNPPARLIHAIADAKTQPKK----KKDKVKKESSGNVKAKLEAEPTR 130 Query: 424 SKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVCN 579 SKAARRFYNENF+D +RLSKVLAA+GVASRRS E LI EGKVTVNGSVCN Sbjct: 131 SKAARRFYNENFRDQA-QRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCN 181 [4][TOP] >UniRef100_Q10RN1 Os03g0152700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10RN1_ORYSJ Length = 415 Score = 136 bits (343), Expect = 1e-30 Identities = 81/174 (46%), Positives = 105/174 (60%), Gaps = 15/174 (8%) Frame = +1 Query: 100 LPRLTCSSLSNSPFKFNISFS----PSNPKPKPDPKPKPEPENDDDGPLMIPWIVRGEDG 267 L R SS S++P FNI+F+ P+ KPKP P P E ++PWIVRGEDG Sbjct: 41 LLRAASSSTSSAP-DFNITFAEPTAPAPSKPKPS-SPAPSAEQ------VVPWIVRGEDG 92 Query: 268 NFKLSSEPPPSFLKDMAIAKTGTKKSDK-----------IQTTKIKKKTEKETKVRAVAQ 414 + + PPP L+ +A+A+ KK+ K + T K + A A Sbjct: 93 KPSMRTAPPPDVLQAIALAEAEAKKAKKDPRRSHKGAAALATPVANAKVRERKAAPATAP 152 Query: 415 PQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVC 576 P++SKAARRFYNEN K+ +RL+KVLAA+GVASRR+CEELI +GKVTVNGSVC Sbjct: 153 PKFSKAARRFYNENIKEHEPQRLAKVLAAAGVASRRTCEELIFQGKVTVNGSVC 206 [5][TOP] >UniRef100_Q8L960 Putative uncharacterized protein n=1 Tax=Arabidopsis thaliana RepID=Q8L960_ARATH Length = 410 Score = 132 bits (333), Expect = 1e-29 Identities = 88/202 (43%), Positives = 115/202 (56%), Gaps = 19/202 (9%) Frame = +1 Query: 31 ATMAAMTVLCFTKSNKLTSTFRTLPR------LTCS--SLSNSPFKFNISFSPSNPKPKP 186 A++AA + + F S F PR L CS S S+ P +F+ISF+P Sbjct: 2 ASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSVSSSSSEPIEFDISFAP------- 54 Query: 187 DPKPKPEPENDDDGP--LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT--GTKKSDKI 354 PKPKP + P L IPWIVR +DG KL S+PP + ++AI T KK DK Sbjct: 55 -PKPKPSSTHGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKS 113 Query: 355 QTTKIKKKTEKETKVRAVA-------QPQYSKAARRFYNENFKDSGGERLSKVLAASGVA 513 + + + + A + +P+ SKAARRFYNENFK+ +RLSKVLAA+GVA Sbjct: 114 KKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQP-QRLSKVLAAAGVA 172 Query: 514 SRRSCEELILEGKVTVNGSVCN 579 SRR+ EELI +GKVTVNG +CN Sbjct: 173 SRRTSEELIFDGKVTVNGILCN 194 [6][TOP] >UniRef100_O80967 Putative uncharacterized protein At2g39140 n=1 Tax=Arabidopsis thaliana RepID=O80967_ARATH Length = 303 Score = 132 bits (333), Expect = 1e-29 Identities = 88/202 (43%), Positives = 115/202 (56%), Gaps = 19/202 (9%) Frame = +1 Query: 31 ATMAAMTVLCFTKSNKLTSTFRTLPR------LTCS--SLSNSPFKFNISFSPSNPKPKP 186 A++AA + + F S F PR L CS S S+ P +F+ISF+P Sbjct: 2 ASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSVSSSSSEPIEFDISFAP------- 54 Query: 187 DPKPKPEPENDDDGP--LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT--GTKKSDKI 354 PKPKP + P L IPWIVR +DG KL S+PP + ++AI T KK DK Sbjct: 55 -PKPKPSSTHGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKS 113 Query: 355 QTTKIKKKTEKETKVRAVA-------QPQYSKAARRFYNENFKDSGGERLSKVLAASGVA 513 + + + + A + +P+ SKAARRFYNENFK+ +RLSKVLAA+GVA Sbjct: 114 KKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQP-QRLSKVLAAAGVA 172 Query: 514 SRRSCEELILEGKVTVNGSVCN 579 SRR+ EELI +GKVTVNG +CN Sbjct: 173 SRRTSEELIFDGKVTVNGILCN 194 [7][TOP] >UniRef100_C5WXU8 Putative uncharacterized protein Sb01g046770 n=1 Tax=Sorghum bicolor RepID=C5WXU8_SORBI Length = 407 Score = 131 bits (330), Expect = 3e-29 Identities = 78/172 (45%), Positives = 104/172 (60%), Gaps = 13/172 (7%) Frame = +1 Query: 100 LPRLTCSSLSNSPFKFNISFSPSNPKPKPDPKPKPEPENDDDGPLMIPWIVRGEDGNFKL 279 L R T S+ +++ FNI+F+ P K P +P ++PWIVRGEDG +L Sbjct: 31 LLRATSSTSTSASPDFNITFAEPAPSKKA---PSAQP--------LVPWIVRGEDGKPRL 79 Query: 280 SSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKK-------------KTEKETKVRAVAQPQ 420 S+ PPP L+ +A+A+ KK+ K +T K K + K K A P+ Sbjct: 80 STSPPPDVLQAIALAEAEAKKAAKKETLKGPKGAVAAAAAAAASNASVKARKAAPTAPPK 139 Query: 421 YSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVC 576 +SKAARRFYNEN K+ +RL+KVLAA+GVASRR+ EELI +GKVTVNGSVC Sbjct: 140 FSKAARRFYNENIKEREPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVC 191 [8][TOP] >UniRef100_B6U7U0 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Zea mays RepID=B6U7U0_MAIZE Length = 406 Score = 129 bits (324), Expect = 2e-28 Identities = 85/199 (42%), Positives = 110/199 (55%), Gaps = 17/199 (8%) Frame = +1 Query: 31 ATMAAMTVLCFTKSNKLTSTFRTLPRL---TCSSLSNSPFKFNISFSPSNPKPKPDPKPK 201 AT A L T+ + R LP L SS S SP FNI+F+ P K P Sbjct: 4 ATTAVSLHLFLTRPASVLRVGRGLPCLLLRATSSTSASP-DFNITFAEPAPSKKA---PS 59 Query: 202 PEPENDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKT 381 +P ++PWIVRGEDG +LS+ PPP ++ +A+A+ KK+ K +T K + Sbjct: 60 AQP--------LVPWIVRGEDGKPRLSTSPPPDVIQAIALAEAEAKKAAKKETLKGQNGA 111 Query: 382 E--------------KETKVRAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASR 519 KE K P++SKAARRFYNEN K+ +RL+KVLAA+GVASR Sbjct: 112 VAAAAAAASNASVKGKERKPAPTVPPKFSKAARRFYNENIKEREPQRLAKVLAAAGVASR 171 Query: 520 RSCEELILEGKVTVNGSVC 576 R+ EELI +GK TVNGSVC Sbjct: 172 RTSEELIFQGKXTVNGSVC 190 [9][TOP] >UniRef100_B9HUJ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HUJ1_POPTR Length = 205 Score = 78.6 bits (192), Expect = 3e-13 Identities = 47/92 (51%), Positives = 60/92 (65%) Frame = +1 Query: 232 LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTEKETKVRAVA 411 L IP I+RGEDGN KL S P L + AKT KK KI+ +++K + K + Sbjct: 34 LFIPRIIRGEDGNLKLHSHHPERSLHALTDAKTQPKK--KIE--EVRKGSGGNAKTKLEV 89 Query: 412 QPQYSKAARRFYNENFKDSGGERLSKVLAASG 507 +P+ SKAARRFYNENF+D +RLSKVLAA+G Sbjct: 90 EPRRSKAARRFYNENFRDQ-AQRLSKVLAAAG 120 [10][TOP] >UniRef100_A9SG51 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SG51_PHYPA Length = 560 Score = 76.3 bits (186), Expect = 2e-12 Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 5/77 (6%) Frame = +1 Query: 361 TKIKKKTEKETKV-----RAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRS 525 +K K KTE +++ ++ A P+YSKAARRFYNE ++ + ERLSKVLAA+GVASRR Sbjct: 200 SKRKAKTEPASRISVGVKKSGAVPKYSKAARRFYNETYR-AECERLSKVLAAAGVASRRG 258 Query: 526 CEELILEGKVTVNGSVC 576 E++I G+V VNG VC Sbjct: 259 SEDIIFAGRVKVNGKVC 275 [11][TOP] >UniRef100_UPI000190651D probable RNA-pseudouridine synthase protein, ribosomal large subunit B n=1 Tax=Rhizobium etli Kim 5 RepID=UPI000190651D Length = 153 Score = 54.7 bits (130), Expect = 5e-06 Identities = 28/55 (50%), Positives = 38/55 (69%) Frame = +1 Query: 409 AQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSV 573 A+P + AAR E D+ ER+SKV+A +GVASRR E +I+EG+VT+NG V Sbjct: 30 AKPAKAAAARPTAPETESDAKAERISKVMARAGVASRRDIERMIMEGRVTLNGRV 84 [12][TOP] >UniRef100_B5H2A5 Pseudouridine synthase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5H2A5_STRCL Length = 376 Score = 54.7 bits (130), Expect = 5e-06 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Frame = +1 Query: 322 AKTGTKKSDKIQT-----TKIKKKTEKETKVRAVAQPQYSKAARRFYNENFKDSGGERLS 486 AK G K+S Q T + E + + + +Y+ + F + GERL Sbjct: 84 AKGGPKQSQSPQRGRGGRTAPARSREYDARAEERNRERYANRPEIKTPKTFGEQEGERLQ 143 Query: 487 KVLAASGVASRRSCEELILEGKVTVNGSV 573 KVLA +GV SRR+CEELI G+V VNGS+ Sbjct: 144 KVLARAGVGSRRACEELIEAGRVEVNGSI 172