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[1][TOP]
>UniRef100_B9RRM2 Ribosomal large subunit pseudouridine synthase B, putative n=1
Tax=Ricinus communis RepID=B9RRM2_RICCO
Length = 315
Score = 166 bits (419), Expect = 2e-39
Identities = 104/196 (53%), Positives = 127/196 (64%), Gaps = 9/196 (4%)
Frame = +1
Query: 19 MGSAATMAAMTV---LCFTK-SNKLTSTFRTLPRLTCSSLSNSP---FKFNISFSPSNPK 177
MGS A ++++ L F+K S L R+LPR+TCSS S+S +FNISF+P
Sbjct: 1 MGSVAALSSLHSIQNLIFSKPSVALLKPIRSLPRITCSSSSSSSSSSLEFNISFAP---- 56
Query: 178 PKPDPKPKPEPE-NDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT-GTKKSDK 351
PKP PK P+ + +D +G L IPWIVRGEDGN KL S PP + +A AKT TKK +K
Sbjct: 57 PKPKPKSPPQLDLSDQEGQLFIPWIVRGEDGNLKLQSHPPARLIHALADAKTHNTKKQNK 116
Query: 352 IQTTKIKKKTEKETKVRAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCE 531
+ KK AV SKAARRFYNENF++ +RLSKVLAASGVASRR+ E
Sbjct: 117 V------KKVAAAAPTPAVKDRHLSKAARRFYNENFREPP-QRLSKVLAASGVASRRNSE 169
Query: 532 ELILEGKVTVNGSVCN 579
ELI +GKVTVNGSVCN
Sbjct: 170 ELIFQGKVTVNGSVCN 185
[2][TOP]
>UniRef100_A7PI03 Chromosome chr13 scaffold_17, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PI03_VITVI
Length = 393
Score = 152 bits (385), Expect = 1e-35
Identities = 92/186 (49%), Positives = 120/186 (64%), Gaps = 2/186 (1%)
Frame = +1
Query: 28 AATMAAMTVLCFTKSNKLTSTFRTLP-RLTCSSLSNSPFKFNISFSPSNPKPKPDPKPKP 204
AA AA + ++ + FRT+P R + S S + +FNISF+P + PKP +
Sbjct: 13 AAASAAFSSFHLSRPSLARRHFRTIPVRSSISPPSTTSAEFNISFAPKSKNPKPQSET-- 70
Query: 205 EPENDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTE 384
L+IPWIVR E+GN ++ S PP +L+DMA AK + K KKK +
Sbjct: 71 ---------LLIPWIVRDENGNLRVQSTPPERYLQDMAKAKALSAK---------KKKKK 112
Query: 385 KETKVRAVA-QPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTV 561
+E+ RAVA +P+YSKAARRFYNENF+D +RLSKVLAA+GVASRR+ EELI EG+VTV
Sbjct: 113 EESTARAVAVEPKYSKAARRFYNENFRDPP-QRLSKVLAAAGVASRRNSEELIFEGRVTV 171
Query: 562 NGSVCN 579
NGSVCN
Sbjct: 172 NGSVCN 177
[3][TOP]
>UniRef100_B9HLH3 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HLH3_POPTR
Length = 397
Score = 147 bits (371), Expect = 6e-34
Identities = 88/172 (51%), Positives = 107/172 (62%), Gaps = 8/172 (4%)
Frame = +1
Query: 88 TFRTLPRLTCSSLSNSP------FKFNISFSPSNPKPKPDPKPKPEPENDD--DGPLMIP 243
TF P L+ + S P +FNI+F+P PKPK + + + G L IP
Sbjct: 15 TFFRKPSLSLLNKSIRPTRITASLEFNITFAPPKPKPKLPANLQTDAASLSLPPGQLFIP 74
Query: 244 WIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTEKETKVRAVAQPQY 423
WIVRGEDGN KL S PP + +A AKT KK + K+KK++ K + A+P
Sbjct: 75 WIVRGEDGNLKLQSNPPARLIHAIADAKTQPKK----KKDKVKKESSGNVKAKLEAEPTR 130
Query: 424 SKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVCN 579
SKAARRFYNENF+D +RLSKVLAA+GVASRRS E LI EGKVTVNGSVCN
Sbjct: 131 SKAARRFYNENFRDQA-QRLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCN 181
[4][TOP]
>UniRef100_Q10RN1 Os03g0152700 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q10RN1_ORYSJ
Length = 415
Score = 136 bits (343), Expect = 1e-30
Identities = 81/174 (46%), Positives = 105/174 (60%), Gaps = 15/174 (8%)
Frame = +1
Query: 100 LPRLTCSSLSNSPFKFNISFS----PSNPKPKPDPKPKPEPENDDDGPLMIPWIVRGEDG 267
L R SS S++P FNI+F+ P+ KPKP P P E ++PWIVRGEDG
Sbjct: 41 LLRAASSSTSSAP-DFNITFAEPTAPAPSKPKPS-SPAPSAEQ------VVPWIVRGEDG 92
Query: 268 NFKLSSEPPPSFLKDMAIAKTGTKKSDK-----------IQTTKIKKKTEKETKVRAVAQ 414
+ + PPP L+ +A+A+ KK+ K + T K + A A
Sbjct: 93 KPSMRTAPPPDVLQAIALAEAEAKKAKKDPRRSHKGAAALATPVANAKVRERKAAPATAP 152
Query: 415 PQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVC 576
P++SKAARRFYNEN K+ +RL+KVLAA+GVASRR+CEELI +GKVTVNGSVC
Sbjct: 153 PKFSKAARRFYNENIKEHEPQRLAKVLAAAGVASRRTCEELIFQGKVTVNGSVC 206
[5][TOP]
>UniRef100_Q8L960 Putative uncharacterized protein n=1 Tax=Arabidopsis thaliana
RepID=Q8L960_ARATH
Length = 410
Score = 132 bits (333), Expect = 1e-29
Identities = 88/202 (43%), Positives = 115/202 (56%), Gaps = 19/202 (9%)
Frame = +1
Query: 31 ATMAAMTVLCFTKSNKLTSTFRTLPR------LTCS--SLSNSPFKFNISFSPSNPKPKP 186
A++AA + + F S F PR L CS S S+ P +F+ISF+P
Sbjct: 2 ASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSVSSSSSEPIEFDISFAP------- 54
Query: 187 DPKPKPEPENDDDGP--LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT--GTKKSDKI 354
PKPKP + P L IPWIVR +DG KL S+PP + ++AI T KK DK
Sbjct: 55 -PKPKPSSTHGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKS 113
Query: 355 QTTKIKKKTEKETKVRAVA-------QPQYSKAARRFYNENFKDSGGERLSKVLAASGVA 513
+ + + + A + +P+ SKAARRFYNENFK+ +RLSKVLAA+GVA
Sbjct: 114 KKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQP-QRLSKVLAAAGVA 172
Query: 514 SRRSCEELILEGKVTVNGSVCN 579
SRR+ EELI +GKVTVNG +CN
Sbjct: 173 SRRTSEELIFDGKVTVNGILCN 194
[6][TOP]
>UniRef100_O80967 Putative uncharacterized protein At2g39140 n=1 Tax=Arabidopsis
thaliana RepID=O80967_ARATH
Length = 303
Score = 132 bits (333), Expect = 1e-29
Identities = 88/202 (43%), Positives = 115/202 (56%), Gaps = 19/202 (9%)
Frame = +1
Query: 31 ATMAAMTVLCFTKSNKLTSTFRTLPR------LTCS--SLSNSPFKFNISFSPSNPKPKP 186
A++AA + + F S F PR L CS S S+ P +F+ISF+P
Sbjct: 2 ASVAASSSISFAASFLKIKAFPLSPRFFPIRTLRCSVSSSSSEPIEFDISFAP------- 54
Query: 187 DPKPKPEPENDDDGP--LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKT--GTKKSDKI 354
PKPKP + P L IPWIVR +DG KL S+PP + ++AI T KK DK
Sbjct: 55 -PKPKPSSTHGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKDKS 113
Query: 355 QTTKIKKKTEKETKVRAVA-------QPQYSKAARRFYNENFKDSGGERLSKVLAASGVA 513
+ + + + A + +P+ SKAARRFYNENFK+ +RLSKVLAA+GVA
Sbjct: 114 KKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQP-QRLSKVLAAAGVA 172
Query: 514 SRRSCEELILEGKVTVNGSVCN 579
SRR+ EELI +GKVTVNG +CN
Sbjct: 173 SRRTSEELIFDGKVTVNGILCN 194
[7][TOP]
>UniRef100_C5WXU8 Putative uncharacterized protein Sb01g046770 n=1 Tax=Sorghum
bicolor RepID=C5WXU8_SORBI
Length = 407
Score = 131 bits (330), Expect = 3e-29
Identities = 78/172 (45%), Positives = 104/172 (60%), Gaps = 13/172 (7%)
Frame = +1
Query: 100 LPRLTCSSLSNSPFKFNISFSPSNPKPKPDPKPKPEPENDDDGPLMIPWIVRGEDGNFKL 279
L R T S+ +++ FNI+F+ P K P +P ++PWIVRGEDG +L
Sbjct: 31 LLRATSSTSTSASPDFNITFAEPAPSKKA---PSAQP--------LVPWIVRGEDGKPRL 79
Query: 280 SSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKK-------------KTEKETKVRAVAQPQ 420
S+ PPP L+ +A+A+ KK+ K +T K K + K K A P+
Sbjct: 80 STSPPPDVLQAIALAEAEAKKAAKKETLKGPKGAVAAAAAAAASNASVKARKAAPTAPPK 139
Query: 421 YSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSVC 576
+SKAARRFYNEN K+ +RL+KVLAA+GVASRR+ EELI +GKVTVNGSVC
Sbjct: 140 FSKAARRFYNENIKEREPQRLAKVLAAAGVASRRTSEELIFQGKVTVNGSVC 191
[8][TOP]
>UniRef100_B6U7U0 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Zea mays
RepID=B6U7U0_MAIZE
Length = 406
Score = 129 bits (324), Expect = 2e-28
Identities = 85/199 (42%), Positives = 110/199 (55%), Gaps = 17/199 (8%)
Frame = +1
Query: 31 ATMAAMTVLCFTKSNKLTSTFRTLPRL---TCSSLSNSPFKFNISFSPSNPKPKPDPKPK 201
AT A L T+ + R LP L SS S SP FNI+F+ P K P
Sbjct: 4 ATTAVSLHLFLTRPASVLRVGRGLPCLLLRATSSTSASP-DFNITFAEPAPSKKA---PS 59
Query: 202 PEPENDDDGPLMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKT 381
+P ++PWIVRGEDG +LS+ PPP ++ +A+A+ KK+ K +T K +
Sbjct: 60 AQP--------LVPWIVRGEDGKPRLSTSPPPDVIQAIALAEAEAKKAAKKETLKGQNGA 111
Query: 382 E--------------KETKVRAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASR 519
KE K P++SKAARRFYNEN K+ +RL+KVLAA+GVASR
Sbjct: 112 VAAAAAAASNASVKGKERKPAPTVPPKFSKAARRFYNENIKEREPQRLAKVLAAAGVASR 171
Query: 520 RSCEELILEGKVTVNGSVC 576
R+ EELI +GK TVNGSVC
Sbjct: 172 RTSEELIFQGKXTVNGSVC 190
[9][TOP]
>UniRef100_B9HUJ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HUJ1_POPTR
Length = 205
Score = 78.6 bits (192), Expect = 3e-13
Identities = 47/92 (51%), Positives = 60/92 (65%)
Frame = +1
Query: 232 LMIPWIVRGEDGNFKLSSEPPPSFLKDMAIAKTGTKKSDKIQTTKIKKKTEKETKVRAVA 411
L IP I+RGEDGN KL S P L + AKT KK KI+ +++K + K +
Sbjct: 34 LFIPRIIRGEDGNLKLHSHHPERSLHALTDAKTQPKK--KIE--EVRKGSGGNAKTKLEV 89
Query: 412 QPQYSKAARRFYNENFKDSGGERLSKVLAASG 507
+P+ SKAARRFYNENF+D +RLSKVLAA+G
Sbjct: 90 EPRRSKAARRFYNENFRDQ-AQRLSKVLAAAG 120
[10][TOP]
>UniRef100_A9SG51 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SG51_PHYPA
Length = 560
Score = 76.3 bits (186), Expect = 2e-12
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 5/77 (6%)
Frame = +1
Query: 361 TKIKKKTEKETKV-----RAVAQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRS 525
+K K KTE +++ ++ A P+YSKAARRFYNE ++ + ERLSKVLAA+GVASRR
Sbjct: 200 SKRKAKTEPASRISVGVKKSGAVPKYSKAARRFYNETYR-AECERLSKVLAAAGVASRRG 258
Query: 526 CEELILEGKVTVNGSVC 576
E++I G+V VNG VC
Sbjct: 259 SEDIIFAGRVKVNGKVC 275
[11][TOP]
>UniRef100_UPI000190651D probable RNA-pseudouridine synthase protein, ribosomal large
subunit B n=1 Tax=Rhizobium etli Kim 5
RepID=UPI000190651D
Length = 153
Score = 54.7 bits (130), Expect = 5e-06
Identities = 28/55 (50%), Positives = 38/55 (69%)
Frame = +1
Query: 409 AQPQYSKAARRFYNENFKDSGGERLSKVLAASGVASRRSCEELILEGKVTVNGSV 573
A+P + AAR E D+ ER+SKV+A +GVASRR E +I+EG+VT+NG V
Sbjct: 30 AKPAKAAAARPTAPETESDAKAERISKVMARAGVASRRDIERMIMEGRVTLNGRV 84
[12][TOP]
>UniRef100_B5H2A5 Pseudouridine synthase n=1 Tax=Streptomyces clavuligerus ATCC 27064
RepID=B5H2A5_STRCL
Length = 376
Score = 54.7 bits (130), Expect = 5e-06
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +1
Query: 322 AKTGTKKSDKIQT-----TKIKKKTEKETKVRAVAQPQYSKAARRFYNENFKDSGGERLS 486
AK G K+S Q T + E + + + +Y+ + F + GERL
Sbjct: 84 AKGGPKQSQSPQRGRGGRTAPARSREYDARAEERNRERYANRPEIKTPKTFGEQEGERLQ 143
Query: 487 KVLAASGVASRRSCEELILEGKVTVNGSV 573
KVLA +GV SRR+CEELI G+V VNGS+
Sbjct: 144 KVLARAGVGSRRACEELIEAGRVEVNGSI 172