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[1][TOP]
>UniRef100_P03589 Methyltransferase n=1 Tax=Alfalfa mosaic virus (strain 425 / isolate
Leiden) RepID=ORF1A_AMVLE
Length = 1126
Score = 387 bits (995), Expect = e-106
Identities = 189/192 (98%), Positives = 191/192 (99%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR
Sbjct: 893 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 952
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
HHKLTGKVERKLITWRSPADATYCLEKYFYKNK+PVKTNSRVLRSIEVVPINSPVSVERN
Sbjct: 953 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKKPVKTNSRVLRSIEVVPINSPVSVERN 1012
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL TGRDP
Sbjct: 1013 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLATGRDP 1072
Query: 36 INGPCHGLVALS 1
INGPC+GLVALS
Sbjct: 1073 INGPCNGLVALS 1084
[2][TOP]
>UniRef100_P89033 Putative viral replicase n=1 Tax=Prune dwarf virus RepID=P89033_9BROM
Length = 1055
Score = 230 bits (586), Expect = 7e-59
Identities = 113/192 (58%), Positives = 143/192 (74%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM+ +A KA++++FDECF+QHAG++YAAAT+AG SEVI FGDTEQIPF+SRN F+ +
Sbjct: 825 SYLMTNNAPKAKKMLFDECFMQHAGVIYAAATIAGVSEVIAFGDTEQIPFISRNDMFLLK 884
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
HH L G ++ IT+R+PAD Y L K+FY+ K PVKT +LRSI+V PIN+ VE +
Sbjct: 885 HHVLKGDHVKQTITYRNPADTVYALSKFFYRKKTPVKTKRHILRSIKVKPINALSQVEVD 944
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+A+Y+ HTQAEKA L A K C I+TTHE QG +FD V F RLTRTS L +G+ P
Sbjct: 945 ASAVYVTHTQAEKASLLATPSFKSC-KIYTTHEVQGGSFDKVIFVRLTRTSNHLYSGKHP 1003
Query: 36 INGPCHGLVALS 1
I G CHGLVALS
Sbjct: 1004 IMGACHGLVALS 1015
[3][TOP]
>UniRef100_Q5QDM5 Replicase n=1 Tax=Fragaria chiloensis latent virus RepID=Q5QDM5_9BROM
Length = 1083
Score = 207 bits (526), Expect = 6e-52
Identities = 104/192 (54%), Positives = 132/192 (68%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM+ S A+++ FDECF+QHAG +YAAATLA CSEV +GD EQIPF+SR S F
Sbjct: 843 SFLMTNSPPTAKKMFFDECFMQHAGCIYAAATLARCSEVYAYGDKEQIPFISRCDSIRFT 902
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H KL GKV ++L+T+R P DAT L K+ YK K+ + T V RSI +VPIN+ +E +
Sbjct: 903 HEKLEGKVVQQLVTYRCPVDATAALSKFLYKKKKNIVTRRNVDRSISIVPINAVSQIEID 962
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
A+Y+ HTQAEK L++ +F+THEA+G TFD VYF RL+RTST LT G P
Sbjct: 963 DKAVYITHTQAEKKALQSADGFSRM-KVFSTHEAEGGTFDKVYFVRLSRTSTHLTAGSHP 1021
Query: 36 INGPCHGLVALS 1
G CHGLVALS
Sbjct: 1022 TMGACHGLVALS 1033
[4][TOP]
>UniRef100_C7T303 p1 protein n=1 Tax=Parietaria mottle virus RepID=C7T303_9BROM
Length = 1097
Score = 202 bits (514), Expect = 2e-50
Identities = 107/193 (55%), Positives = 137/193 (70%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM S A R++FDECFL HAG VYAAATLA SEVI GDTEQ+PF+SR P F +
Sbjct: 865 SYLMLKSWFSASRMLFDECFLTHAGCVYAAATLAQVSEVIALGDTEQVPFISRLPEFRMQ 924
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
HHKL+G++E + T+R P DATYCL+ FYKNK VK+ S V RSIE+VPI+SP+ +
Sbjct: 925 HHKLSGEIETQTTTYRCPRDATYCLKSMFYKNK-SVKSASVVERSIELVPISSPIQIPCE 983
Query: 216 TNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+ LY+ HT+A+K A+LK K +NI TTHEAQG T+D V + RL++T+ L +G+
Sbjct: 984 NDVLYITHTRADKDALLKIPGFKK--ENIKTTHEAQGDTWDKVVYFRLSKTTNLLHSGKG 1041
Query: 39 PINGPCHGLVALS 1
P G CH LVA+S
Sbjct: 1042 PELGSCHNLVAIS 1054
[5][TOP]
>UniRef100_Q6RK14 P1 protein n=1 Tax=Parietaria mottle virus RepID=Q6RK14_9BROM
Length = 1098
Score = 201 bits (510), Expect = 4e-50
Identities = 107/193 (55%), Positives = 136/193 (70%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM S A R++FDECFL HAG VYAAATLA SEVI GDTEQ+PF+SR P F +
Sbjct: 866 SYLMLKSWFSASRMLFDECFLTHAGCVYAAATLAQVSEVIALGDTEQVPFISRLPEFRMQ 925
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
HHKL+G++E + T+R P DATYCL+ FYKNK VKT S V RSI++VPI+SP+ +
Sbjct: 926 HHKLSGEIETQTTTYRCPRDATYCLKSMFYKNK-SVKTASVVERSIDLVPISSPIQIPCE 984
Query: 216 TNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+ LY+ HT+A+K A+LK K +NI TTHEAQG T+D V RL++T+ L +G+
Sbjct: 985 NDVLYITHTRADKDALLKIPGFKK--ENIKTTHEAQGDTWDKVVCFRLSKTTNLLHSGKG 1042
Query: 39 PINGPCHGLVALS 1
P G CH LVA+S
Sbjct: 1043 PELGSCHNLVAIS 1055
[6][TOP]
>UniRef100_Q2PMD3 Replicase n=1 Tax=Strawberry necrotic shock virus RepID=Q2PMD3_9BROM
Length = 1090
Score = 198 bits (504), Expect = 2e-49
Identities = 105/193 (54%), Positives = 135/193 (69%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM + + RL+FDECFL HAG +YAAATLA EVI GDTEQ+PF+SR P F +
Sbjct: 857 SYLMLKTWFSSDRLLFDECFLTHAGCIYAAATLAQVKEVIALGDTEQVPFISRLPEFRVQ 916
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
HHKL G +E + T+R P DAT CL+ +FYK K+ VK+ SRV RS+E+ PINS V + R
Sbjct: 917 HHKLCGNIEVQTTTYRCPRDATACLKNFFYK-KKTVKSASRVERSLELCPINSAVQIPRV 975
Query: 216 TNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
N LY+ HT+A+K A++K +K DNI TTHEAQG T+DNV RL++T+ L +G+
Sbjct: 976 ENTLYMTHTRADKDALMKIPGFVK--DNIKTTHEAQGDTWDNVIMFRLSKTTGLLHSGKG 1033
Query: 39 PINGPCHGLVALS 1
P G CH LVA+S
Sbjct: 1034 PEIGSCHNLVAIS 1046
[7][TOP]
>UniRef100_B7TX62 Replicase n=1 Tax=Tobacco streak virus RepID=B7TX62_9BROM
Length = 1094
Score = 196 bits (499), Expect = 8e-49
Identities = 102/192 (53%), Positives = 133/192 (69%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM S A+RL+FDECFL HAG VYAAATLA EVI FGDTEQ+PF+SR P F
Sbjct: 863 SYLMLKSWFSAERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQVPFISRLPEFRME 922
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
HHK+ GK++ + T+R P DAT CL+K+FYKNK VK+ S V RS+E+ PI S + ++
Sbjct: 923 HHKVKGKIDVQTTTYRCPRDATACLKKFFYKNK-TVKSASVVDRSLELCPIQSVIQIQPE 981
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ LY+ HT+A+K L + D I TTHEAQG+T+D+V RL++T+ L +G+ P
Sbjct: 982 RDVLYMTHTRADKETLMRIPGMPK-DRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGP 1040
Query: 36 INGPCHGLVALS 1
GPCH LVA+S
Sbjct: 1041 DLGPCHNLVAIS 1052
[8][TOP]
>UniRef100_B9VV81 p1 protein (Fragment) n=1 Tax=Bacopa chlorosis virus
RepID=B9VV81_9BROM
Length = 1054
Score = 194 bits (494), Expect = 3e-48
Identities = 104/193 (53%), Positives = 134/193 (69%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM + A RL+FDECFL HAG VYAAA+LA EVI GDTEQ+PF+SR P F +
Sbjct: 864 SFLMLKNWFSADRLLFDECFLTHAGCVYAAASLAQVKEVIALGDTEQVPFISRLPEFRMQ 923
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
HHKL+GK+E + T+R P DATYCL+ FYK K VKT S V RSI+++PI+SP+ +
Sbjct: 924 HHKLSGKIECQTTTYRCPRDATYCLKTQFYKTK-SVKTASVVERSIDLIPISSPIQIPCE 982
Query: 216 TNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
N LY+ HT+A+K A++K K NI TTHEAQG T+DNV RL++T+ L +G+
Sbjct: 983 DNVLYITHTRADKDALMKIPGFNK--SNIKTTHEAQGDTWDNVIAFRLSKTTNLLHSGKG 1040
Query: 39 PINGPCHGLVALS 1
P G CH LVA+S
Sbjct: 1041 PDLGCCHNLVAIS 1053
[9][TOP]
>UniRef100_Q997A4 Putative viral replicase p1 n=1 Tax=American plum line pattern virus
RepID=Q997A4_9BROM
Length = 1062
Score = 192 bits (487), Expect = 2e-47
Identities = 101/193 (52%), Positives = 131/193 (67%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM+ + A + FDECFLQH+G++ AA TLA ++ FGDTEQIPF+SRNP F F+
Sbjct: 822 SYLMAKNPPTADVVYFDECFLQHSGVILAAVTLAKAKKLYAFGDTEQIPFISRNPLFRFK 881
Query: 396 HHKLTGKVERK-LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 220
H LT + L T+RSPADAT+ L KYFYK K +KT SRV SI V PI+ +E
Sbjct: 882 HRFLTSNRRIECLDTFRSPADATFLLGKYFYKKKSQIKTTSRVQPSISVKPISVHDQIEV 941
Query: 219 NTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+ +A+Y C+ QAEKA L ++ K + + T HE QG++ D V F RL++TST LTTG+
Sbjct: 942 DKSAIYCCYIQAEKAELLSKPQFKNME-VATIHEKQGESVDKVIFFRLSKTSTELTTGKH 1000
Query: 39 PINGPCHGLVALS 1
P+ GPCH LVALS
Sbjct: 1001 PVMGPCHALVALS 1013
[10][TOP]
>UniRef100_Q2QF35 Replicase n=1 Tax=Blackberry chlorotic ringspot virus
RepID=Q2QF35_9BROM
Length = 1093
Score = 192 bits (487), Expect = 2e-47
Identities = 105/193 (54%), Positives = 133/193 (68%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM S + RL+FDECFL HAG VYAAATLA EVI GDTEQ+PF+SR P F +
Sbjct: 860 SYLMLKSWFSSDRLLFDECFLTHAGCVYAAATLAQVKEVIALGDTEQVPFISRLPEFKVQ 919
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
+HKL GK+E + T+R P DAT CL+ +FYK K VK+ SRV RS+E+ PINS V +
Sbjct: 920 YHKLCGKIEVQTTTYRCPRDATACLKTFFYKRK-TVKSASRVDRSLELCPINSAVQIPCV 978
Query: 216 TNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
N LY+ HT+A+K A++K K +NI TTHEAQG T+DNV RL++T+ L +G+
Sbjct: 979 ENTLYMTHTRADKDALMKIPGFNK--NNIKTTHEAQGDTWDNVIMFRLSKTTGLLHSGKG 1036
Query: 39 PINGPCHGLVALS 1
P G CH LVA+S
Sbjct: 1037 PDIGSCHNLVAIS 1049
[11][TOP]
>UniRef100_Q6JE42 Replicase n=1 Tax=Humulus japonicus latent virus RepID=Q6JE42_9BROM
Length = 1041
Score = 191 bits (485), Expect = 3e-47
Identities = 101/193 (52%), Positives = 134/193 (69%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM++ KA+RL+FDECF++HAG VYAAATLA C EV+ +GDTEQIP +SRNP+F FR
Sbjct: 812 SYLMASRPEKARRLLFDECFMRHAGFVYAAATLAECEEVLAYGDTEQIPEISRNPAFKFR 871
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKT-NSRVLRSIEVVPINSPVSVER 220
HKL G++ ++ +T+R PADA Y L K+FYK KR +KT +RS+ + INS +V
Sbjct: 872 CHKLEGEIVQQTVTYRCPADAVYVLNKHFYKTKRNIKTKRHNPMRSLNIHAINSVRAVPV 931
Query: 219 NTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+ +ALYL +TQAEK LK+ G + T HEA+G + V RL+RTS SL TG+D
Sbjct: 932 DKSALYLTYTQAEKEQLKSA--FPGV-KVLTVHEAEGASVPKVILVRLSRTSLSLYTGKD 988
Query: 39 PINGPCHGLVALS 1
+ G H LVA+S
Sbjct: 989 AVFGASHALVAIS 1001
[12][TOP]
>UniRef100_Q9QGH0 Putative methyltransferase/helicase n=1 Tax=Apple mosaic virus
RepID=Q9QGH0_9BROM
Length = 1046
Score = 183 bits (465), Expect = 7e-45
Identities = 104/193 (53%), Positives = 134/193 (69%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM+ S +K++R+IFDECFLQHAG VYAAAT+A E++ FGDT+QIPFVSR P R
Sbjct: 813 SFLMNGSKIKSKRIIFDECFLQHAGCVYAAATIAEAEELVMFGDTQQIPFVSRIPYMKLR 872
Query: 396 HHKLTGKVER-KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVER 220
+HK++ R +T+RSPAD T L K+FY K+ ++T +R +RS+ V PI S V+
Sbjct: 873 NHKVSADERRAHNMTYRSPADTTMALSKWFY--KKSIRTANRTIRSMIVKPIVSVNQVD- 929
Query: 219 NTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
N LY+ HTQAEK L A T + + T+ EAQG T NV F RL+RTS SL TG+D
Sbjct: 930 NDFELYITHTQAEKHTLIA-TGKFDKNKVHTSAEAQGMTERNVAFVRLSRTSISLYTGKD 988
Query: 39 PINGPCHGLVALS 1
P+ GPCHGLVALS
Sbjct: 989 PLMGPCHGLVALS 1001
[13][TOP]
>UniRef100_Q99HR1 Viral replicase p1 n=1 Tax=Tulare apple mosaic virus
RepID=Q99HR1_9BROM
Length = 1060
Score = 179 bits (453), Expect = 2e-43
Identities = 91/192 (47%), Positives = 127/192 (66%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SY+M A+R++ DECFL H+G++YAAATLA E+I FGDT+QIPFVSR P+F +
Sbjct: 830 SYIMLKKWFTAERMLVDECFLVHSGIIYAAATLAQVKEIIAFGDTKQIPFVSRIPTFTLK 889
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H + G ++ KL+T+R P DAT L + FYK K VKT + + S+ ++ INS + +
Sbjct: 890 HPSIKGVLKPKLVTYRCPRDATAVLSEKFYKKK--VKTFNPISSSLSLININSGMEIPAE 947
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ LY+ HTQA+K + + +N+ TTHEAQGKTFDNV RL++T+ L +G+ P
Sbjct: 948 RDTLYIMHTQADKCAMLRHPGI-NANNVMTTHEAQGKTFDNVILVRLSKTTNLLYSGKMP 1006
Query: 36 INGPCHGLVALS 1
GP H LVALS
Sbjct: 1007 DAGPSHNLVALS 1018
[14][TOP]
>UniRef100_B7T2J3 Replicase (Fragment) n=1 Tax=Lilac ring mottle virus
RepID=B7T2J3_9BROM
Length = 621
Score = 178 bits (451), Expect = 3e-43
Identities = 95/198 (47%), Positives = 127/198 (64%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM + +RL+ DECFL H+G +YAAATLA EV+ FGDT+QIPF+SR P+F R
Sbjct: 383 SYLMMKTWFTGERLLVDECFLVHSGAIYAAATLARVKEVLAFGDTKQIPFISRIPTFPIR 442
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H L G ++ + +T+R P DAT LEK+FY KRP+KT S V S+++ PI+S ++V
Sbjct: 443 HASLNGVLKPRNVTFRCPRDATAALEKFFY--KRPIKTASAVSNSMQIHPISSVMNVPVE 500
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDN------IFTTHEAQGKTFDNVYFCRLTRTSTSL 55
N LY+ HTQA+K L + + C +TH+AQGKT+DNV RL+RT L
Sbjct: 501 KNTLYITHTQADKCNLLQRNGINACVTTDECALALSTHKAQGKTYDNVICVRLSRTGNLL 560
Query: 54 TTGRDPINGPCHGLVALS 1
+G+ P G H LVALS
Sbjct: 561 YSGKSPECGSSHNLVALS 578
[15][TOP]
>UniRef100_Q91NQ1 Replicase p1 n=1 Tax=Prunus necrotic ringspot virus
RepID=Q91NQ1_9BROM
Length = 1045
Score = 177 bits (450), Expect = 4e-43
Identities = 104/194 (53%), Positives = 131/194 (67%), Gaps = 2/194 (1%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM+ + R+IFDECFLQHAG VYAAA+LAG E++ FGDT+QIPFVSR P F +
Sbjct: 812 SYLMNPKRPSSVRVIFDECFLQHAGCVYAAASLAGAEELVLFGDTKQIPFVSRIPHFRLK 871
Query: 396 HHKLTG--KVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVE 223
H ++ KV L T+R PADAT L K+FY +R VKT + LRS+ V PI S ++
Sbjct: 872 DHLVSADEKVMSNL-TYRCPADATMALSKWFY--RRNVKTANTTLRSMSVKPIVSVSQID 928
Query: 222 RNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGR 43
R+ + LY+ HTQAEK L A + + D +FTT EAQGKT RL+RTS SL TG+
Sbjct: 929 RDFD-LYMTHTQAEKHTLIA-SGVVPKDKVFTTAEAQGKTESRAALVRLSRTSMSLFTGK 986
Query: 42 DPINGPCHGLVALS 1
DP+ GPCH LVA+S
Sbjct: 987 DPLMGPCHSLVAMS 1000
[16][TOP]
>UniRef100_Q9IMN1 Replicase 1a (Fragment) n=1 Tax=Hydrangea mosaic virus
RepID=Q9IMN1_9BROM
Length = 387
Score = 169 bits (427), Expect = 2e-40
Identities = 95/192 (49%), Positives = 122/192 (63%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM + A RL+ DECFL HAGL+YAAATLA EVI FGDT+QIPFVSR P+ R
Sbjct: 157 SYLMLKNWFTADRLLVDECFLVHAGLIYAAATLARVKEVIAFGDTKQIPFVSRIPTVTLR 216
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H + GK++ + +T+R P D T L + FY K V T + V S+E++ INS V +
Sbjct: 217 HASVIGKLKPRTMTYRCPRDVTAVLSEKFYNTK--VGTFNPVKTSLELININSGVEIPVV 274
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ALY+ HT+A+K LK + D + TTHEAQGKT DNV RL+RT+ L +G+ P
Sbjct: 275 KDALYISHTKADKFALKRLPGMSNVD-VLTTHEAQGKTRDNVILVRLSRTTNLLYSGKMP 333
Query: 36 INGPCHGLVALS 1
G H LV LS
Sbjct: 334 DAGSSHNLVGLS 345
[17][TOP]
>UniRef100_Q98701 Replicase n=1 Tax=Elm mottle virus RepID=Q98701_9BROM
Length = 1055
Score = 169 bits (427), Expect = 2e-40
Identities = 95/192 (49%), Positives = 122/192 (63%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM + A RL+ DECFL HAGL+YAAATLA EVI FGDT+QIPFVSR P+ R
Sbjct: 825 SYLMLKNWFTADRLLVDECFLVHAGLIYAAATLARVKEVIAFGDTKQIPFVSRIPTVTLR 884
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H + GK++ + +T+R P D T L + FY K V T + V S+E++ INS V +
Sbjct: 885 HASVIGKLKPRTMTYRCPRDVTAVLSEKFYNTK--VGTFNPVKTSLELININSGVEIPVV 942
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ALY+ HT+A+K LK + D + TTHEAQGKT DNV RL+RT+ L +G+ P
Sbjct: 943 KDALYISHTKADKFALKRLPGMSNVD-VLTTHEAQGKTRDNVILVRLSRTTNLLYSGKMP 1001
Query: 36 INGPCHGLVALS 1
G H LV LS
Sbjct: 1002 DPGSSHNLVGLS 1013
[18][TOP]
>UniRef100_B8RCA3 Replicase n=1 Tax=Asparagus virus 2 RepID=B8RCA3_9BROM
Length = 1076
Score = 167 bits (422), Expect = 7e-40
Identities = 95/192 (49%), Positives = 122/192 (63%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM + A RL+ DECFL HAGL+YAAATLA EVI FGDT+QIPFVSR P+ R
Sbjct: 825 SYLMLKNWFTADRLLVDECFLVHAGLIYAAATLARVKEVIAFGDTKQIPFVSRIPTVTLR 884
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H + G ++ + IT+R P D T L + FY K VKT + V S++++ INS V +
Sbjct: 885 HASVIGVLKPRTITYRCPRDVTAILSEKFYHTK--VKTFNPVKISLDLININSAVEIPVV 942
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ALY+ HT+A+K LK + D + TTHEAQGKT DNV RL+RT+ L +G+ P
Sbjct: 943 KDALYITHTKADKFALKKLPGMGNVD-VLTTHEAQGKTRDNVILARLSRTTHLLYSGKMP 1001
Query: 36 INGPCHGLVALS 1
G H LV LS
Sbjct: 1002 DAGSSHNLVGLS 1013
[19][TOP]
>UniRef100_Q66108 Citrus leaf rugose ilarvirus putative viral replicase n=1 Tax=Citrus
leaf rugose virus RepID=Q66108_9BROM
Length = 1051
Score = 166 bits (420), Expect = 1e-39
Identities = 87/192 (45%), Positives = 121/192 (63%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM A RL+ DECFL H+G++YAAATL E+I FGDT+QIPFVSR P+F +
Sbjct: 816 SYLMLKKWFTADRLLVDECFLVHSGIIYAAATLGQVKEIIAFGDTKQIPFVSRIPTFSLK 875
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H + GK++ K IT+R P DAT L + FY+ VKT + S+ ++ I+S + +
Sbjct: 876 HPSIRGKLKPKTITYRCPRDATAVLSEKFYETN--VKTFNPTSSSLSLIDISSSMEIPAE 933
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ LY+ HTQA+K + + DN+ TTHEAQGKTF++V RL++ + L +G+ P
Sbjct: 934 KDTLYIMHTQADKCAMLRHPGINP-DNVMTTHEAQGKTFNHVILVRLSKPTNLLYSGKMP 992
Query: 36 INGPCHGLVALS 1
GP H LV LS
Sbjct: 993 DAGPSHNLVGLS 1004
[20][TOP]
>UniRef100_A5JVP4 Putative viral replicase n=1 Tax=Citrus variegation virus
RepID=A5JVP4_9BROM
Length = 1076
Score = 164 bits (416), Expect = 3e-39
Identities = 92/192 (47%), Positives = 121/192 (63%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM + A RL+ DECFL HAGL+YAAA LA EVI FGDT+QIPFVSR P+ R
Sbjct: 825 SYLMLKNWFTAGRLLVDECFLVHAGLIYAAAALARVKEVIAFGDTKQIPFVSRIPAVTLR 884
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H + G ++ + +T+R P D T L + FY K VKT + V S++++ INS + +
Sbjct: 885 HASVIGTLKPRTVTYRCPRDVTAVLSEKFYNTK--VKTFNPVKTSLDLISINSGMEIPVV 942
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ALY+ HT+A+K LK + D + TTHEAQGKT DNV RL+RT+ L +G+ P
Sbjct: 943 KDALYISHTKADKFALKRLPGMSNVD-VLTTHEAQGKTRDNVILVRLSRTTHLLYSGKMP 1001
Query: 36 INGPCHGLVALS 1
G H LV LS
Sbjct: 1002 EAGSSHNLVGLS 1013
[21][TOP]
>UniRef100_O57161 Putative replicase n=1 Tax=Spinach latent virus RepID=O57161_9BROM
Length = 1056
Score = 162 bits (411), Expect = 1e-38
Identities = 92/192 (47%), Positives = 121/192 (63%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM + A+RL+ DECFL HAGLVYAAATLA EVI FGDT+QIPFVSR P+ R
Sbjct: 826 SYLMLRTWFTAERLLVDECFLVHAGLVYAAATLARVKEVIAFGDTKQIPFVSRIPTVKLR 885
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
H + G ++ + IT+R P D T L + FY K VKT + V +S+E+ I+S +
Sbjct: 886 HASVVGTLKPRTITYRCPRDVTAVLSEKFYGTK--VKTFNLVKQSLELKNIDSSTEIPVE 943
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ LY+ HTQA+K L + G + + TTHEAQGKT D+V RL++T+ L +G+ P
Sbjct: 944 KDTLYIAHTQADKHALMRLPGMNGIE-VLTTHEAQGKTRDHVILVRLSKTTNLLYSGKMP 1002
Query: 36 INGPCHGLVALS 1
G H LV LS
Sbjct: 1003 DAGGSHNLVGLS 1014
[22][TOP]
>UniRef100_P89680 Putative viral replicase n=1 Tax=Tobacco streak virus
RepID=P89680_9BROM
Length = 1094
Score = 156 bits (394), Expect = 1e-36
Identities = 86/192 (44%), Positives = 116/192 (60%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM S A+RL+FDECFL HAG VYAAATLA EVI FGDTEQ+PF+SR P F
Sbjct: 863 SYLMLKSWFSAERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQVPFISRLPEFRME 922
Query: 396 HHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
HHK+ GK+ + + L K + K+ + + R E+ PI S + ++
Sbjct: 923 HHKVKGKIS-CTTDHLQMSKRCHSLFKENFLQKQDCEVSERCSSLAELCPIQSVIQIQPE 981
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+ LY+ HT+A+K L + D I TTHEAQG+T+D+V RL++T+ L +G+ P
Sbjct: 982 RDVLYMTHTRADKETLMRIPGMPK-DRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGP 1040
Query: 36 INGPCHGLVALS 1
GPCH LVA+S
Sbjct: 1041 DLGPCHNLVAIS 1052
[23][TOP]
>UniRef100_Q9IWA9 Replication protein n=2 Tax=Oat golden stripe virus
RepID=Q9IWA9_9VIRU
Length = 1853
Score = 113 bits (282), Expect = 1e-23
Identities = 75/186 (40%), Positives = 98/186 (52%), Gaps = 9/186 (4%)
Frame = -3
Query: 576 SYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
SYLM ++A + FDE + HAG+VY A L G +VI GD++QIPFV+R S
Sbjct: 1106 SYLMHDCGKTLRASVVHFDEALMAHAGMVYFCADLLGAKKVICQGDSQQIPFVNRVESIS 1165
Query: 402 FRHHKLT-GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PI 244
++ KL + E +T+RSP D + L Y + V T + VLRS+ VV P+
Sbjct: 1166 LQYAKLVIDRTESVRMTYRSPIDVAHYLNAKAYYDGGRVTTKNEVLRSMSVVGPRGTRPM 1225
Query: 243 NSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTS 64
NS V + YL TQAEK L KG ++ T HEAQGKTFDNV RL T
Sbjct: 1226 NSAYCVPYVKDTQYLTFTQAEKDDLFKALRSKGSVSVNTVHEAQGKTFDNVILVRLKTTE 1285
Query: 63 TSLTTG 46
+ G
Sbjct: 1286 NPIYPG 1291
[24][TOP]
>UniRef100_Q89249 209 kDa readthrough protein n=2 Tax=Soil-borne wheat mosaic virus
RepID=Q89249_SBWMV
Length = 1828
Score = 107 bits (267), Expect = 7e-22
Identities = 67/175 (38%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 373
+A + FDE + HAG+VY A + G +VI GD++QIPF++R S ++ KL +
Sbjct: 1092 RAATVHFDEALMAHAGIVYFCADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDET 1151
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K + + V T + VLRS++VV P+ S V + +
Sbjct: 1152 EYVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRD 1211
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
A YL TQ+EKA L KG + T HE QGKTFD+V RL T + G
Sbjct: 1212 AQYLTFTQSEKADLYKALRAKGPVEVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1266
[25][TOP]
>UniRef100_Q2F3J8 Replicase (Fragment) n=1 Tax=Blackberry chlorotic ringspot virus
RepID=Q2F3J8_9BROM
Length = 197
Score = 105 bits (261), Expect = 3e-21
Identities = 50/82 (60%), Positives = 60/82 (73%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM S + RL+FDECFL HAG +YAAATLA EVI GDTEQ+PF+SR P F +
Sbjct: 115 SYLMLKSWFSSDRLLFDECFLTHAGCIYAAATLAQVKEVIALGDTEQVPFISRLPEFRVQ 174
Query: 396 HHKLTGKVERKLITWRSPADAT 331
HHKL+GK+E + T+R P DAT
Sbjct: 175 HHKLSGKIEVQTTTYRCPRDAT 196
[26][TOP]
>UniRef100_Q9JAD2 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD2_9VIRU
Length = 1816
Score = 103 bits (258), Expect = 7e-21
Identities = 65/175 (37%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 373
+A + FDE + HAG+VY A + G +V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K Y + V T + LRS+ V P+ S V +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRD 1199
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
YL TQ+EKA L +G N+ T HE QGKTFDNV RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDNVIVVRLKTTENEIYPG 1254
[27][TOP]
>UniRef100_Q9JGK3 152-kDa protein n=1 Tax=Soil-borne wheat mosaic virus
RepID=Q9JGK3_SBWMV
Length = 1334
Score = 103 bits (256), Expect = 1e-20
Identities = 74/187 (39%), Positives = 95/187 (50%), Gaps = 10/187 (5%)
Frame = -3
Query: 576 SYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
SYLM ++A + FDE + HAG VY A L G +VI GD++QIPFV+R S
Sbjct: 1095 SYLMHDCGKKLRATTVHFDEALMTHAGAVYFCADLLGARKVICQGDSQQIPFVNRVESIK 1154
Query: 402 FRHHKLT-GKVERKLITWRSPADATYCLE-KYFYKNKRPVKTNSRVLRSIEVV------P 247
+ KL K + +T+RSP D + L K FY R + T + V+RS+ VV P
Sbjct: 1155 LQFAKLVIDKTDLIRMTYRSPIDVAHYLNYKSFYTGGR-ITTKNEVVRSMSVVGPRNVRP 1213
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ S SV YL TQ EK L KG N+ T HE QGKTFD+V RL T
Sbjct: 1214 MTSVYSVPYVPGVQYLTFTQTEKDDLFKALRSKGHVNVNTVHETQGKTFDDVILVRLKTT 1273
Query: 66 STSLTTG 46
+ G
Sbjct: 1274 ENEIYPG 1280
[28][TOP]
>UniRef100_Q9JAD3 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD3_9VIRU
Length = 1816
Score = 102 bits (254), Expect = 2e-20
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 373
+A + FDE + HAG+VY A + G +V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKKVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K Y + V T + LRS+ V P+ S V +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRD 1199
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
YL TQ+EKA L +G N+ T HE QGKTF+NV RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFENVIVVRLKTTENEIYPG 1254
[29][TOP]
>UniRef100_Q9WJD7 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus
RepID=Q9WJD7_9VIRU
Length = 1858
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 373
+A + FDE + HAG+VY A + G +VI GD++QIPF++R S ++ KL +
Sbjct: 1122 RAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRVESITLQYSKLVIDET 1181
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K + + V T + V+RS++ V P+ S V +
Sbjct: 1182 EHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPRDVKPMTSVHCVPYFKD 1241
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
A YL TQ+EK L KG + T HE QGKTFD+V RL T + G
Sbjct: 1242 AQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVVRLETTENEIYPG 1296
[30][TOP]
>UniRef100_Q9IWB1 Replication protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9IWB1_9VIRU
Length = 1816
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 373
+A + FDE + HAG+VY A + G V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K Y + V T + LRS+ V P+ S V + +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRD 1199
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
YL TQ+EKA L +G N+ T HE QGKTFD+V RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1254
[31][TOP]
>UniRef100_Q9DJG6 Replication protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9DJG6_9VIRU
Length = 1816
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 373
+A + FDE + HAG+VY A + G V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K Y + V T + LRS+ V P+ S V + +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRD 1199
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
YL TQ+EKA L +G N+ T HE QGKTFD+V RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1254
[32][TOP]
>UniRef100_Q91QY9 Replicase readthrough n=2 Tax=Chinese wheat mosaic virus
RepID=Q91QY9_9VIRU
Length = 1858
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 373
+A + FDE + HAG+VY A + G +VI GD++QIPF++R S ++ KL +
Sbjct: 1122 RAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRVESITLQYSKLVIDET 1181
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K + + V T + V+RS++ V P+ S V +
Sbjct: 1182 EHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPRDVKPMTSVHCVPYFKD 1241
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
A YL TQ+EK L KG + T HE QGKTFD+V RL T + G
Sbjct: 1242 AQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1296
[33][TOP]
>UniRef100_Q91DN3 Replication protein n=2 Tax=Soil-borne wheat mosaic virus
RepID=Q91DN3_SBWMV
Length = 1816
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 373
+A + FDE + HAG+VY A + G V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K Y + V T + LRS+ V P+ S V + +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRDAKPMTSVHCVPYHRD 1199
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
YL TQ+EKA L +G N+ T HE QGKTFD+V RL T + G
Sbjct: 1200 TQYLTFTQSEKADLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1254
[34][TOP]
>UniRef100_B3IUH4 p212 n=2 Tax=Soil-borne wheat mosaic virus RepID=B3IUH4_SBWMV
Length = 1858
Score = 102 bits (253), Expect = 3e-20
Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 373
+A + FDE + HAG+VY A + G +VI GD++QIPF++R S ++ KL +
Sbjct: 1122 RAATVHFDEALMAHAGMVYFCADILGAKKVICQGDSQQIPFINRVESITLQYSKLVIDET 1181
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K + + V T + V+RS++ V P+ S V +
Sbjct: 1182 EHVRLTYRSPVDVAHYLTKKSWYSGGRVTTKNPVMRSMKTVGPRDVKPMTSVHCVPYFKD 1241
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
A YL TQ+EK L KG + T HE QGKTFD+V RL T + G
Sbjct: 1242 AQYLTFTQSEKTDLYKALRNKGPVTVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1296
[35][TOP]
>UniRef100_Q9QBU0 Polymerase n=2 Tax=Potato mop-top virus RepID=Q9QBU0_9VIRU
Length = 1303
Score = 101 bits (251), Expect = 5e-20
Identities = 68/183 (37%), Positives = 98/183 (53%), Gaps = 6/183 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYL++ + +A L FDE + HAG+VY A VI GD++QIPF++R S R
Sbjct: 1069 SYLLNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSVICQGDSQQIPFINRVESITLR 1128
Query: 396 HHKL-TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSP 235
+ KL V K +T+RSP D A+Y +K FY N ++RS++ V + S
Sbjct: 1129 YSKLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVTSANP-LVRSLKTVGPRDGMTSI 1187
Query: 234 VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
S+ + YL Q+EK ++ Q +G N+ T HE+QGKT+DNV CRL T +
Sbjct: 1188 YSIPKIPGTQYLTFLQSEKEEMR-QYLGRGNWNVNTVHESQGKTYDNVVLCRLKATDNEI 1246
Query: 54 TTG 46
G
Sbjct: 1247 YPG 1249
[36][TOP]
>UniRef100_Q80A46 RNA-dependent RNA polymerase n=1 Tax=Potato mop-top virus
RepID=Q80A46_9VIRU
Length = 1303
Score = 101 bits (251), Expect = 5e-20
Identities = 68/183 (37%), Positives = 98/183 (53%), Gaps = 6/183 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYL++ + +A L FDE + HAG+VY A VI GD++QIPF++R S R
Sbjct: 1069 SYLLNDTQSRANVLHFDEALMAHAGMVYFCADDLSARSVICQGDSQQIPFINRVESITLR 1128
Query: 396 HHKL-TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSP 235
+ KL V K +T+RSP D A+Y +K FY N ++RS++ V + S
Sbjct: 1129 YSKLEIDNVVEKRLTYRSPLDVASYLTKKNFYGTSVVTSANP-LVRSLKTVGPRDGMTSI 1187
Query: 234 VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
S+ + YL Q+EK ++ Q +G N+ T HE+QGKT+DNV CRL T +
Sbjct: 1188 YSIPKIPGTQYLTFLQSEKEEMR-QYLGRGNWNVNTVHESQGKTYDNVVLCRLKATDNEI 1246
Query: 54 TTG 46
G
Sbjct: 1247 YPG 1249
[37][TOP]
>UniRef100_Q9JAD4 207K protein n=2 Tax=Soil-borne cereal mosaic virus
RepID=Q9JAD4_9VIRU
Length = 1816
Score = 100 bits (249), Expect = 8e-20
Identities = 63/175 (36%), Positives = 89/175 (50%), Gaps = 7/175 (4%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL-TGKV 373
+A + FDE + HAG+VY A + G V+ GD++QIPF++R S ++ KL
Sbjct: 1080 RAATVHFDEALMAHAGMVYFCADILGAKRVLCQGDSQQIPFINRVESITLKYAKLQIDDT 1139
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PINSPVSVERNTN 211
E +T+RSP D + L K Y + V T + LRS+ V P+ S V +
Sbjct: 1140 EYVRLTYRSPIDVAHYLTKKSYYSGGRVLTKNTTLRSMNTVGPRGAKPMTSVHCVPYQRD 1199
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
YL TQ+EK+ L +G N+ T HE QGKTFD+V RL T + G
Sbjct: 1200 TQYLTFTQSEKSDLYKALRNRGPVNVNTVHETQGKTFDDVIVVRLKTTENEIYPG 1254
[38][TOP]
>UniRef100_Q9JGJ7 145-kDa protein n=2 Tax=Sorghum chlorotic spot virus
RepID=Q9JGJ7_9VIRU
Length = 1277
Score = 98.2 bits (243), Expect = 4e-19
Identities = 73/187 (39%), Positives = 93/187 (49%), Gaps = 10/187 (5%)
Frame = -3
Query: 576 SYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
SYLM + L FDE + HAG+VY A L G ++I GD++QIPFV+R S
Sbjct: 1038 SYLMHDCGKEMTCNTLHFDEALMAHAGMVYFCADLLGARKLICQGDSQQIPFVNRVESIT 1097
Query: 402 FRHHKLT-GKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV------P 247
R+ L K ++ T+RSP D A Y K +Y R TNS RS+ VV P
Sbjct: 1098 LRYANLVIDKTDKIRHTYRSPIDVACYLTMKGYYGADRITTTNSDG-RSLGVVGPRHEKP 1156
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ S V YL TQAEK L KG ++ T HEAQGKTF++V RL T
Sbjct: 1157 MTSVYCVPYLAGVQYLTFTQAEKEDLHKALRSKGPVSVSTVHEAQGKTFNDVILVRLKTT 1216
Query: 66 STSLTTG 46
+ G
Sbjct: 1217 ENEIYPG 1223
[39][TOP]
>UniRef100_B6E276 Replicase large subunit n=2 Tax=Hibiscus latent Fort Pierce virus
RepID=B6E276_9VIRU
Length = 1646
Score = 95.9 bits (237), Expect = 2e-18
Identities = 67/198 (33%), Positives = 98/198 (49%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM+ L DE + H G+V L+ C++ +GDT+QIPF++R +F +
Sbjct: 912 SFLMNPKPFTYDTLWIDEGLMLHTGMVNYCVLLSHCTKCFIYGDTQQIPFINRVMNFDYP 971
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H T E++ IT R P D T+ L + + K PV + S V RS+E + P
Sbjct: 972 GHLRTIVVDDTEKRRITSRCPLDVTFYLTQRY---KGPVMSTSSVTRSVETKFVAGPARF 1028
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
E L + TQA+K LK KG +++ T HE QG+TF+ V RLT T ++
Sbjct: 1029 EPRATPLPGKIVTFTQADKETLKK----KGYNDVHTVHEIQGETFNEVSLVRLTATPLNI 1084
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LV LS
Sbjct: 1085 ISPESP-----HVLVGLS 1097
[40][TOP]
>UniRef100_Q05983 Non-structural polyprotein protein n=1 Tax=Raspberry bushy dwarf
virus RepID=Q05983_RBDV
Length = 1694
Score = 94.7 bits (234), Expect = 4e-18
Identities = 74/203 (36%), Positives = 106/203 (52%), Gaps = 11/203 (5%)
Frame = -3
Query: 576 SYLMSASAV-KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF 400
SYL+S S L DE L H G++ A ++G +V FGD+EQIPF +R F
Sbjct: 907 SYLLSPSVTGSCDELFIDEYGLSHPGILLLAIHISGIRKVTLFGDSEQIPFCNRLADFPL 966
Query: 399 RHHK-----LTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINS- 238
+++ L E + T+R P D T L+K YK K P+KT S V SI + PI S
Sbjct: 967 KYNSVEDVGLNFDREIRSTTYRCPQDITLSLQK-MYKTK-PIKTVSTVESSITIKPIKSE 1024
Query: 237 ---PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRLTR 70
P+ + LY+C T+ ++++LK + + + + T H AQG ++ NV + RLTR
Sbjct: 1025 FEIPLPNAFDGPVLYICMTKHDESLLKLRWAKENISSEVRTVHAAQGLSYKNVVYFRLTR 1084
Query: 69 TSTSLTTGRDPINGPCHGLVALS 1
T L T R P H LVA+S
Sbjct: 1085 TDNDLYTKR---KLPYH-LVAIS 1103
[41][TOP]
>UniRef100_O90699 Putative uncharacterized protein n=2 Tax=Beet virus Q
RepID=O90699_9VIRU
Length = 1818
Score = 94.7 bits (234), Expect = 4e-18
Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ +A L FDE + HAG VY A + VI GD++QIPFV R +
Sbjct: 1076 SFIMNDRFSRANVLHFDEALMAHAGTVYFCADMLSARTVICQGDSQQIPFVPRVEGITLK 1135
Query: 396 HHKL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINSPV 232
+ KL V K +T+RSP D L + Y + + + LRS++ + + S
Sbjct: 1136 YAKLKIDNVVEKRLTYRSPLDVAAFLTRKGYYGNSVIMSANETLRSMKTIGPRTGMTSIY 1195
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLT 52
S+ + N YL TQAEK ++ KG + T HE QGKT++NV RL T+ +
Sbjct: 1196 SIPKVANCQYLTFTQAEKEEMEKYLG-KGKWGVNTVHECQGKTYENVVLVRLKSTANEIY 1254
Query: 51 TG 46
G
Sbjct: 1255 PG 1256
[42][TOP]
>UniRef100_Q8JVK7 Replicase large subunit n=2 Tax=Paprika mild mottle virus
RepID=Q8JVK7_PMMV
Length = 1616
Score = 92.8 bits (229), Expect = 2e-17
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 373
+RL DE + H G VY TL+ C E FGDT+QIP+++R +F F H + +
Sbjct: 900 KRLFIDEGLMLHPGCVYFLVTLSLCDEAFVFGDTQQIPYINRVQNFPFPKHFSKLIVDET 959
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 202
E++ T R P D T+ L + + + V T S RS+ V +N ++ T L
Sbjct: 960 EKRRTTLRCPVDVTHFLNQRY---EGAVTTTSTTTRSVGVDVVNGAATMNPVTRPLKGKI 1016
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
+ TQ++K L + +G +N+ T HE QG+T+D+V RLT T + P
Sbjct: 1017 ITFTQSDKITLAS----RGYENVNTVHEIQGETYDDVCLVRLTPTPIHIIARDSP----- 1067
Query: 21 HGLVALS 1
H LV L+
Sbjct: 1068 HVLVGLT 1074
[43][TOP]
>UniRef100_C8KH75 1a protein n=1 Tax=Melandrium yellow fleck virus RepID=C8KH75_9BROM
Length = 948
Score = 92.8 bits (229), Expect = 2e-17
Identities = 67/181 (37%), Positives = 92/181 (50%), Gaps = 16/181 (8%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 370
K +R++ DE L H G + A A ++GC EV+ FGDTEQI F SR+ +F +H+ +
Sbjct: 735 KCKRVLIDEAGLMHYGQLLAVAAISGCDEVVAFGDTEQISFKSRDVTFRMKHNAINYD-S 793
Query: 369 RKLI--TWRSPADATYCLEKYFYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNT 214
R+L+ T+R P D ++ K R K N S V +S+ I+SP +
Sbjct: 794 RELVKTTYRCPQDVVDAVKLLKRKCGNRGSKYNDWVSKSTVRKSLYKRSISSPTQINIEV 853
Query: 213 NALYLCHTQAEKAVLKAQTHLKGC--------DNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
N YL TQ++KA L QT K +NI T HEAQG + DNV RL T
Sbjct: 854 NKFYLTMTQSDKAAL--QTRAKDFSLSKDWIENNIKTVHEAQGISVDNVVLVRLKSTKCD 911
Query: 57 L 55
L
Sbjct: 912 L 912
[44][TOP]
>UniRef100_C7U0R4 Putative 204K replicase protein n=2 Tax=Beet soil-borne virus
RepID=C7U0R4_9VIRU
Length = 1778
Score = 91.7 bits (226), Expect = 4e-17
Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 7/184 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S
Sbjct: 1036 SFLMNDKDSRAKVLHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLE 1095
Query: 396 HHKL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINS 238
+ KL T VE++L T+RSP D A + K FY + N RS+ VV + S
Sbjct: 1096 YAKLEITNVVEKRL-TYRSPLDVACFLTRKNFYGTSTVMSANP-TGRSMSVVGPRDGMTS 1153
Query: 237 PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
S+ + A YL TQ+EK + KG ++ T HE+QGKT+D+V RL T
Sbjct: 1154 NYSIPKKKGAQYLTFTQSEKEDMVRYLG-KGQWSVNTVHESQGKTYDDVILVRLKPTDNE 1212
Query: 57 LTTG 46
+ G
Sbjct: 1213 IYPG 1216
[45][TOP]
>UniRef100_O56790 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=O56790_9VIRU
Length = 1778
Score = 90.9 bits (224), Expect = 6e-17
Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 7/184 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S
Sbjct: 1036 SFLMNDKDSRAKILHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLE 1095
Query: 396 HHKL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINS 238
+ KL T VE++L T+RSP D A + K FY + + S RSI VV + S
Sbjct: 1096 YAKLEITNVVEKRL-TYRSPLDVACFLTRKNFYWHFHCYERKSNG-RSISVVGPRDGMTS 1153
Query: 237 PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
S+ + A YL TQ+EK + KG ++ T HE+QGKT+D+V RL T
Sbjct: 1154 NYSIPKKKGAQYLTFTQSEKEDMVRYLG-KGQWSVNTVHESQGKTYDDVILVRLKPTDNE 1212
Query: 57 LTTG 46
+ G
Sbjct: 1213 IYPG 1216
[46][TOP]
>UniRef100_Q9YPH5 209kDa protein n=2 Tax=Broad bean necrosis virus RepID=Q9YPH5_9VIRU
Length = 1821
Score = 90.5 bits (223), Expect = 8e-17
Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 9/186 (4%)
Frame = -3
Query: 576 SYLMS--ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
SYL++ + ++A + FDE + HAG+VY A + + GD++QIPF++R S
Sbjct: 1068 SYLLNDFGNKLRADTVHFDEALMAHAGMVYFIAMMCSAKRIKCQGDSKQIPFINRVESIK 1127
Query: 402 FRHHKL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVV------PI 244
+ KL + K +T+RSP D Y L K + + + + +LRS++ V P+
Sbjct: 1128 LEYAKLDIHETIAKRLTYRSPLDVAYYLTKKGFYGLDFITSANPLLRSMKTVGPRSSTPM 1187
Query: 243 NSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTS 64
+S + + A YL TQ EK +K Q G + T HEAQGKTF++V RL T
Sbjct: 1188 SSIYVIPKTKGASYLTFTQTEKDEMK-QYLGSGDWTVNTVHEAQGKTFNDVILVRLKNTE 1246
Query: 63 TSLTTG 46
+ G
Sbjct: 1247 NEIYPG 1252
[47][TOP]
>UniRef100_C5IXG8 204 kDa protein n=1 Tax=Beet soil-borne virus RepID=C5IXG8_9VIRU
Length = 1778
Score = 90.1 bits (222), Expect = 1e-16
Identities = 67/184 (36%), Positives = 97/184 (52%), Gaps = 7/184 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S
Sbjct: 1036 SFLMNDKDSRAKVLHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLE 1095
Query: 396 HHKL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINS 238
+ KL T VE++L T+RSP D A + K FY + + S RS+ VV + S
Sbjct: 1096 YAKLEITNVVEKRL-TYRSPLDVACFLTRKNFYGHFHCYERKSNG-RSMSVVGPRDGMTS 1153
Query: 237 PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
S+ + A YL TQ+EK + KG ++ T HE+QGKT+D+V RL T
Sbjct: 1154 NYSIPKKKGAQYLTFTQSEKEDIVRYLG-KGQWSVNTVHESQGKTYDDVILVRLKPTDNE 1212
Query: 57 LTTG 46
+ G
Sbjct: 1213 IYPG 1216
[48][TOP]
>UniRef100_B4X9D6 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D6_9VIRU
Length = 1778
Score = 90.1 bits (222), Expect = 1e-16
Identities = 67/184 (36%), Positives = 97/184 (52%), Gaps = 7/184 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S
Sbjct: 1036 SFLMNDKDSRAKVLHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLE 1095
Query: 396 HHKL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINS 238
+ KL T VE++L T+RSP D A + K FY + + S RS+ VV + S
Sbjct: 1096 YAKLEITNVVEKRL-TYRSPLDVACFLTRKNFYGHFHCYERKSNG-RSMSVVGPRDGMTS 1153
Query: 237 PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
S+ + A YL TQ+EK + KG ++ T HE+QGKT+D+V RL T
Sbjct: 1154 NYSIPKKKGAQYLTFTQSEKEDMVRYLG-KGQWSVNTVHESQGKTYDDVILVRLKPTDNE 1212
Query: 57 LTTG 46
+ G
Sbjct: 1213 IYPG 1216
[49][TOP]
>UniRef100_Q9WJD8 (PEBV) genomic RNA1 for 141K, 201K, 30K and 12K proteins n=2 Tax=Pea
early-browning virus RepID=Q9WJD8_PEBV
Length = 1766
Score = 89.4 bits (220), Expect = 2e-16
Identities = 70/185 (37%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+V+ A +A +VI GD +QI + R R L G+ VE
Sbjct: 1032 LHFDEALMAHAGMVFFCAQIAKAKKVICQGDQKQIAYKPRVSQLTLRFTSLIGRFDEVEE 1091
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K +++R P D L++ FY K V T + VLRS++V I S VE YL Q
Sbjct: 1092 KRMSYRCPVDVALTLDR-FYTGK--VVTKNSVLRSMDVKRIGSKEQVEMEHGIQYLTFLQ 1148
Query: 186 AEK---AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPCHG 16
+EK A L Q +K N T HEAQGKTF V RL T L G++ +
Sbjct: 1149 SEKKDIANLLCQRKVKSFVN--TVHEAQGKTFKKVRLVRLKPTDDVLARGQE------YQ 1200
Query: 15 LVALS 1
+VALS
Sbjct: 1201 IVALS 1205
[50][TOP]
>UniRef100_B4X9D8 204 kDa protein n=2 Tax=Beet soil-borne virus RepID=B4X9D8_9VIRU
Length = 1778
Score = 88.6 bits (218), Expect = 3e-16
Identities = 66/184 (35%), Positives = 97/184 (52%), Gaps = 7/184 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM+ +A+ L FDE + HAG+VY A +I GD++QIPF++R S
Sbjct: 1036 SFLMNDKDSRAKVLHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLE 1095
Query: 396 HHKL--TGKVERKLITWRSPAD-ATYCLEKYFYKNKRPVKTNSRVLRSIEVV----PINS 238
+ KL T VE++L T+RSP D A + K FY + + S RS+ VV + S
Sbjct: 1096 YAKLEITNVVEKRL-TYRSPLDVACFLTRKNFYGHFHCYERKSNG-RSMSVVGPRDGMTS 1153
Query: 237 PVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
S+ + A YL TQ+EK + KG ++ T H++QGKT+D+V RL T
Sbjct: 1154 NYSIPKKKGAQYLTFTQSEKEDMVRYLG-KGQWSVNTVHKSQGKTYDDVILVRLKPTDNE 1212
Query: 57 LTTG 46
+ G
Sbjct: 1213 IYPG 1216
[51][TOP]
>UniRef100_A3QVG6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=A3QVG6_TMGMV
Length = 1609
Score = 88.6 bits (218), Expect = 3e-16
Identities = 68/198 (34%), Positives = 97/198 (48%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V ++GC+ +GDT+QIPF++R +F +
Sbjct: 885 SFLMHPKPRTHKRLFIDEGLMLHTGCVNFLVLISGCNIAYIYGDTQQIPFINRVQNFPYP 944
Query: 396 HH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP--- 235
H KL +VE + T R P D + L+ K + V T S V RS+ I
Sbjct: 945 KHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIGGKGVL 1001
Query: 234 VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
SV + + TQA+K L+ KG N+ T HE QG+TF++V RLT T +L
Sbjct: 1002 NSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDVSLVRLTATPLTL 1057
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1058 ISKSSP-----HVLVALT 1070
[52][TOP]
>UniRef100_Q8V703 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=Q8V703_TMGMV
Length = 1609
Score = 88.2 bits (217), Expect = 4e-16
Identities = 68/198 (34%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V ++GC +GDT+QIPF++R +F +
Sbjct: 885 SFLMHPKPRTHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQNFPYP 944
Query: 396 HH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP--- 235
H KL +VE + T R P D + L+ K + V T S V RS+ I
Sbjct: 945 KHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVSTTSTVQRSVSSEMIGGKGVL 1001
Query: 234 VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
SV + + TQA+K L+ KG N+ T HE QG+TF++V RLT T +L
Sbjct: 1002 NSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDVSLVRLTATPLTL 1057
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1058 ISKSSP-----HVLVALT 1070
[53][TOP]
>UniRef100_Q1XF44 Replicase large subunit n=2 Tax=Streptocarpus flower break virus
RepID=Q1XF44_9VIRU
Length = 1606
Score = 87.0 bits (214), Expect = 9e-16
Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 7/199 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+L+ + +RL DE + H G V A + C EV+ +GDT QIPF++R +F +
Sbjct: 874 SFLIHMKGTQVKRLFIDEGLMLHTGCVNFLALFSHCEEVLVYGDTHQIPFINRVANFPYP 933
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H VE++ +T R PAD T+ L Y K V S +LRS+E + +
Sbjct: 934 SHFAQLQYDSVEKRRVTLRCPADVTHHLNSQ-YDGK--VMCTSSILRSVECEVVRGKAVL 990
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
T L + TQ++K L+ + + + ++ T HE QG+T+++V RLT T
Sbjct: 991 NPKTKPLSGKIITFTQSDKLELQNKGYGEVDVLDVNTVHEIQGETYEHVSLVRLTPTPLE 1050
Query: 57 LTTGRDPINGPCHGLVALS 1
+ + +G H LVAL+
Sbjct: 1051 IVS-----HGSPHVLVALT 1064
[54][TOP]
>UniRef100_Q9DUT3 Genomic RNA1 for 1a protein, (ORF1) n=1 Tax=Pelargonium zonate spot
virus RepID=Q9DUT3_PZSV
Length = 962
Score = 86.7 bits (213), Expect = 1e-15
Identities = 68/202 (33%), Positives = 101/202 (50%), Gaps = 16/202 (7%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S LM A K +R++FDE L H G + A T++G E+IGFGD+EQI FVSR+ F +
Sbjct: 749 SVLMHGVAHKVKRVLFDEVSLVHFGQLCAILTISGAEELIGFGDSEQISFVSRDRLFDMK 808
Query: 396 HHKLT-GKVERKLITWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINS 238
+HKL+ ++++ T+R P D C++ K R K T S V +S+ ++S
Sbjct: 809 YHKLSPDSSDQQIRTFRCPKDVVECVKIMARKVGARGSKYNNWFTTSAVRKSLGYHKVSS 868
Query: 237 PVSVERNTNALYLCHTQAEKAVLKAQTH-------LKGCDNIF-TTHEAQGKTFDNVYFC 82
+ YL TQA+KA L ++ + D + TTHE+QG + V
Sbjct: 869 INESPLRPDVHYLTMTQADKASLLSKARETRFRPSVSTIDEVIKTTHESQGISVPKVILW 928
Query: 81 RLTRTSTSLTTGRDPIN-GPCH 19
R T L T + + G CH
Sbjct: 929 RGKSTKCDLFTDKMELRFGCCH 950
[55][TOP]
>UniRef100_Q9DJP7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP7_9CLOS
Length = 343
Score = 86.7 bits (213), Expect = 1e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 33 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 92
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 93 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEI 147
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 148 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 205
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 206 ---RLVRCKYQEDT---PFCSDNHAVVALT 229
[56][TOP]
>UniRef100_A4LAL6 Replicase large subunit n=2 Tax=Tobacco mild green mosaic virus
RepID=A4LAL6_TMGMV
Length = 1609
Score = 86.7 bits (213), Expect = 1e-15
Identities = 68/198 (34%), Positives = 95/198 (47%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V ++GC +GDT+QIPF++R +F +
Sbjct: 885 SFLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQNFPYP 944
Query: 396 HH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP--- 235
H KL +VE T R P D + L+ K + V T S V RS+ I
Sbjct: 945 KHFEKLQVDEVEMGRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIGGKGVL 1001
Query: 234 VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
SV + + TQA+K L+ KG N+ T HE QG+TF++V RLT T +L
Sbjct: 1002 NSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDVSLVRLTATPLTL 1057
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1058 ISKSSP-----HVLVALT 1070
[57][TOP]
>UniRef100_P18339 Replicase small subunit n=1 Tax=Tobacco mild green mosaic virus
RepID=RDRP_TMGMV
Length = 1609
Score = 86.7 bits (213), Expect = 1e-15
Identities = 68/198 (34%), Positives = 95/198 (47%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S LM +RL DE + H G V ++GC +GDT+QIPF++R +F +
Sbjct: 885 SLLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQQIPFINRVQNFPYP 944
Query: 396 HH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP--- 235
H KL +VE + T R P D + L+ K + V T S V RS+ I
Sbjct: 945 KHFEKLQVDEVEMRRTTLRCPGDVNFFLQS---KYEGAVTTTSTVQRSVSSEMIGGKGVL 1001
Query: 234 VSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
SV + + TQA+K L+ KG N+ T HE QG+TF++V RLT T +L
Sbjct: 1002 NSVSKPLKGKIVTFTQADKFELEE----KGYKNVNTVHEIQGETFEDVSLVRLTATPLTL 1057
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1058 ISKSSP-----HVLVALT 1070
[58][TOP]
>UniRef100_Q9WJQ9 Putative uncharacterized protein (Fragment) n=1 Tax=Tobacco rattle
virus RepID=Q9WJQ9_9VIRU
Length = 400
Score = 86.3 bits (212), Expect = 2e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 186 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 245
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 246 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 302
Query: 186 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 303 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 352
[59][TOP]
>UniRef100_Q9J942 194 kDa protein n=2 Tax=Tobacco rattle virus RepID=Q9J942_9VIRU
Length = 1707
Score = 86.3 bits (212), Expect = 2e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 186 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[60][TOP]
>UniRef100_Q9DL34 RNA-dependent RNA polymerase n=2 Tax=Tobacco rattle virus
RepID=Q9DL34_9VIRU
Length = 1707
Score = 86.3 bits (212), Expect = 2e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 186 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[61][TOP]
>UniRef100_Q8JU32 Putative replicase n=2 Tax=Tobacco rattle virus RepID=Q8JU32_9VIRU
Length = 1707
Score = 86.3 bits (212), Expect = 2e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 186 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[62][TOP]
>UniRef100_Q5K6D3 Replicase large subunit n=2 Tax=Hibiscus latent Singapore virus
RepID=Q5K6D3_9VIRU
Length = 1638
Score = 86.3 bits (212), Expect = 2e-15
Identities = 64/199 (32%), Positives = 97/199 (48%), Gaps = 7/199 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF- 400
S+LM+ + + L DE + H G + L+ C + FGDT+QIPF++R +F +
Sbjct: 907 SFLMNPKPFEYKVLWIDEGLMLHTGAISFCVALSHCEQCYVFGDTQQIPFINRVMNFDYP 966
Query: 399 --RHHKLTGKVERKLITWRSPADAT-YCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVS 229
+T VE++ IT R P D T Y ++Y K PV + + V RS++ +
Sbjct: 967 KTLQTLVTDSVEKRRITSRCPLDVTCYLAQRY----KGPVVSTNNVERSLDTKLVAGAAR 1022
Query: 228 VERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
E L + TQA+K LK +G ++ T HE QG+T+ V RLT T S
Sbjct: 1023 FEPQLTPLPGKVITFTQADKETLKK----RGYQDVHTVHEVQGETYTEVSLVRLTPTPLS 1078
Query: 57 LTTGRDPINGPCHGLVALS 1
+ + P H LV+LS
Sbjct: 1079 IISPDSP-----HVLVSLS 1092
[63][TOP]
>UniRef100_O56250 RNA polymerase n=1 Tax=Tobacco rattle virus RepID=O56250_9VIRU
Length = 1707
Score = 86.3 bits (212), Expect = 2e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVVAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 186 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[64][TOP]
>UniRef100_P05080 134 kDa protein n=2 Tax=Tobacco rattle virus RepID=194K_TRVSY
Length = 1707
Score = 86.3 bits (212), Expect = 2e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTE 1032
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 186 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELVNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[65][TOP]
>UniRef100_Q9IFX0 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9IFX0_9CLOS
Length = 3115
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 2830
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 2831 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 2885
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2944 ---RLVRCKYQEDT---PFCSDNHVVVALT 2967
[66][TOP]
>UniRef100_Q9DJR0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR0_9CLOS
Length = 371
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[67][TOP]
>UniRef100_Q9DJQ6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ6_9CLOS
Length = 357
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 56 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 115
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 116 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 170
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 171 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 228
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 229 ---RLVRCKYQEDT---PFCSDNHVVVALT 252
[68][TOP]
>UniRef100_Q9DJQ2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ2_9CLOS
Length = 257
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 56 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 115
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 116 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 170
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 171 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 228
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 229 ---RLVRCKYQEDT---PFCSDNHVVVALT 252
[69][TOP]
>UniRef100_Q9DJP3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP3_9CLOS
Length = 368
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 60 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 119
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 120 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 174
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 175 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 232
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 233 ---RLVRCKYQEDT---PFCSDNHVVVALT 256
[70][TOP]
>UniRef100_Q9DJN7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN7_9CLOS
Length = 371
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLDVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEV 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[71][TOP]
>UniRef100_Q9DJN1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJN1_9CLOS
Length = 371
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTESVGKSSVSIEV 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[72][TOP]
>UniRef100_Q9DJM8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM8_9CLOS
Length = 371
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T+S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[73][TOP]
>UniRef100_Q9DJM7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM7_9CLOS
Length = 371
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T+S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[74][TOP]
>UniRef100_Q9DJM6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM6_9CLOS
Length = 262
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T+S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTSSIGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[75][TOP]
>UniRef100_Q9DJM1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM1_9CLOS
Length = 371
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSAGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCR 79
R
Sbjct: 234 RLAR 237
[76][TOP]
>UniRef100_Q9DJL6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL6_9CLOS
Length = 371
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPRDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[77][TOP]
>UniRef100_Q70BW7 Replicase n=2 Tax=Tobacco rattle virus RepID=Q70BW7_9VIRU
Length = 1707
Score = 85.9 bits (211), Expect = 2e-15
Identities = 62/170 (36%), Positives = 80/170 (47%), Gaps = 4/170 (2%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+VY A +AG I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIAGAKRCICQGDQNQISFKPRVSQVNLRFSSLVGKFDIVTE 1032
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K T+RSPAD L KY+ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKYYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 186 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELINLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[78][TOP]
>UniRef100_B5THB7 p1a n=1 Tax=Citrus tristeza virus RepID=B5THB7_9CLOS
Length = 3115
Score = 85.9 bits (211), Expect = 2e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 2830
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 2831 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 2885
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2944 ---RLVRCKYQEDT---PFCSDNHVVVALT 2967
[79][TOP]
>UniRef100_Q9Q6Q4 Helicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1
RepID=Q9Q6Q4_9CLOS
Length = 398
Score = 85.5 bits (210), Expect = 3e-15
Identities = 67/195 (34%), Positives = 94/195 (48%), Gaps = 17/195 (8%)
Frame = -3
Query: 534 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 364
+ DE ++ H G+ G EVI +GD QIPF++R +FV + + +++
Sbjct: 163 LIDEVYMLHKGMFQLTVVSMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEEQIDYT 222
Query: 363 LITWRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 205
I++R PAD Y L K Y N + R LRS E VPI +P +
Sbjct: 223 DISYRCPADVCYVLSSMTDARGKKMYPNGVFPNGDVRPLRSFEKVPIATPEDALLYEADV 282
Query: 204 YLCHTQAEKAVL-KAQTHL-----KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGR 43
YL TQ EKA + KA + K ++ TTHEAQGKT++NV RL +
Sbjct: 283 YLTMTQNEKAEMQKAVAKMEVVAGKKRPDVITTHEAQGKTYENVVLVRLKKAD------- 335
Query: 42 DPI-NGPCHGLVALS 1
DPI + H +VALS
Sbjct: 336 DPIFSRKPHIVVALS 350
[80][TOP]
>UniRef100_Q9DJQ5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ5_9CLOS
Length = 368
Score = 85.5 bits (210), Expect = 3e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[81][TOP]
>UniRef100_Q9DJP5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP5_9CLOS
Length = 319
Score = 85.5 bits (210), Expect = 3e-15
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 18/184 (9%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 58 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 117
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 118 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 172
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 173 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 230
Query: 90 YFCR 79
R
Sbjct: 231 RLVR 234
[82][TOP]
>UniRef100_Q9DJM9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM9_9CLOS
Length = 371
Score = 85.5 bits (210), Expect = 3e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[83][TOP]
>UniRef100_Q9DJM5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM5_9CLOS
Length = 371
Score = 85.5 bits (210), Expect = 3e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIAYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[84][TOP]
>UniRef100_Q2LK62 P349 protein n=1 Tax=Citrus tristeza virus RepID=Q2LK62_9CLOS
Length = 3115
Score = 85.5 bits (210), Expect = 3e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 2830
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 2831 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEI 2885
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2944 ---RLVRCKYQEDT---PFCSDNHVVVALT 2967
[85][TOP]
>UniRef100_O10467 347-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=O10467_9CLOS
Length = 3115
Score = 85.5 bits (210), Expect = 3e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 2830
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 2831 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEI 2885
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2944 ---RLVRCKYQEDT---PFCSDNHVVVALT 2967
[86][TOP]
>UniRef100_B5THA5 p1a n=1 Tax=Citrus tristeza virus RepID=B5THA5_9CLOS
Length = 3115
Score = 85.5 bits (210), Expect = 3e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 2830
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 2831 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEI 2885
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2944 ---RLVRCKYQEDT---PFCSDNHVVVALT 2967
[87][TOP]
>UniRef100_Q9DTG5 349-kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=Q9DTG5_9CLOS
Length = 3132
Score = 85.1 bits (209), Expect = 4e-15
Identities = 65/205 (31%), Positives = 95/205 (46%), Gaps = 13/205 (6%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN V
Sbjct: 2788 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 2847
Query: 396 HHKLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
H + +E + +++R P D L K++ ++ T S S+ + IN
Sbjct: 2848 LHDIDAFIEPQHRVYGEVSYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEIINGCD 2907
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYFCRL 76
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V RL
Sbjct: 2908 DVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV---RL 2962
Query: 75 TRTSTSLTTGRDPINGPCHGLVALS 1
R T P H +VAL+
Sbjct: 2963 VRCKYQEDT---PFCSDNHVVVALT 2984
[88][TOP]
>UniRef100_Q9DJN8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN8_9CLOS
Length = 367
Score = 85.1 bits (209), Expect = 4e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[89][TOP]
>UniRef100_Q9DJN6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN6_9CLOS
Length = 371
Score = 85.1 bits (209), Expect = 4e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[90][TOP]
>UniRef100_Q9DJN4 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJN4_9CLOS
Length = 370
Score = 85.1 bits (209), Expect = 4e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 60 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 119
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 120 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 174
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 175 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 232
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 233 ---RLVRCKYQEDT---PFCSDNHVVVALT 256
[91][TOP]
>UniRef100_Q9DJN3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN3_9CLOS
Length = 371
Score = 85.1 bits (209), Expect = 4e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[92][TOP]
>UniRef100_Q9DJN0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJN0_9CLOS
Length = 371
Score = 85.1 bits (209), Expect = 4e-15
Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +KA L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKADLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDMDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYNVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[93][TOP]
>UniRef100_Q9DJM4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM4_9CLOS
Length = 371
Score = 85.1 bits (209), Expect = 4e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[94][TOP]
>UniRef100_Q9DJM3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM3_9CLOS
Length = 371
Score = 85.1 bits (209), Expect = 4e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[95][TOP]
>UniRef100_Q5G7G7 Polyprotein 1a n=2 Tax=Mint virus 1 RepID=Q5G7G7_9CLOS
Length = 2511
Score = 85.1 bits (209), Expect = 4e-15
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 6/172 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM+ L DECF+ HAG V C I FGD++QI ++ R+
Sbjct: 2197 SYLMNRCGETCDLLFMDECFMVHAGQVLGIINKTMCKVAILFGDSKQIHYIERDEFVSTV 2256
Query: 396 HHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
+H + +E I++R P D L K + + + T+S +S+ VV I S
Sbjct: 2257 YHDIDSFIEPFCRMYGEISYRCPWDVCEWLSKLYKRQIKSNNTSSIGKQSVSVVNIESVE 2316
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNVYFCR 79
V + YL +TQ+EKA L+ + + ++ T HEAQG+TF NVY R
Sbjct: 2317 DVPFVQSIKYLTYTQSEKAELRRKFEKFSSEPSVNTVHEAQGETFKNVYLVR 2368
[96][TOP]
>UniRef100_C6F418 ORF1a n=1 Tax=Citrus tristeza virus RepID=C6F418_9CLOS
Length = 3115
Score = 85.1 bits (209), Expect = 4e-15
Identities = 66/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 2830
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 2831 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 2885
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 2943
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2944 ---RLVRCKYQEDT---PFCSDNHVVVALT 2967
[97][TOP]
>UniRef100_A3FG29 Replicase large subunit n=2 Tax=Rehmannia mosaic virus
RepID=A3FG29_9VIRU
Length = 1616
Score = 84.7 bits (208), Expect = 5e-15
Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 9/201 (4%)
Frame = -3
Query: 576 SYLMSASAV---KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 406
S++M+ V + +RL DE + H G V +++ C +GDT+QIP+++R F
Sbjct: 887 SFMMNYGKVARCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYVYGDTQQIPYINRVTGF 946
Query: 405 VFRHH--KL-TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSP 235
+ H KL +VE + T R PAD T+ L K + + V + S V RS+ ++
Sbjct: 947 PYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKRSVSQEMVSGA 1003
Query: 234 VSVERNTNALY---LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTS 64
++ + L+ L TQ++K L + +G ++ T HE QG+T+ +V RLT T
Sbjct: 1004 ATINPISKPLHGKVLTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTP 1059
Query: 63 TSLTTGRDPINGPCHGLVALS 1
S+ +G P H LVALS
Sbjct: 1060 VSIISGDSP-----HVLVALS 1075
[98][TOP]
>UniRef100_Q9DJR6 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR6_9CLOS
Length = 371
Score = 84.3 bits (207), Expect = 6e-15
Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNDL--QKHLGRLTVGRTKAVPIVNTVHEVQGDTYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[99][TOP]
>UniRef100_Q9DJR1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR1_9CLOS
Length = 371
Score = 84.3 bits (207), Expect = 6e-15
Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 13/205 (6%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN V
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 120
Query: 396 HHKLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
H + E + +++R P D L K++ ++ T S S+ + IN
Sbjct: 121 LHDIDALYEPQHRIYGEVSYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEVINGCD 180
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYFCRL 76
V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V RL
Sbjct: 181 DVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKPVPVVNTVHEVQGETYKKV---RL 235
Query: 75 TRTSTSLTTGRDPINGPCHGLVALS 1
R G P H +VAL+
Sbjct: 236 VRCKYQ---GDTPFCSDNHVVVALT 257
[100][TOP]
>UniRef100_Q8JW08 1a protein n=1 Tax=Spring beauty latent virus RepID=Q8JW08_9BROM
Length = 958
Score = 84.3 bits (207), Expect = 6e-15
Identities = 64/180 (35%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 370
K RL+ DE L H G + A A L GC V+ FGDTEQI F SR+ +F FRH + + +
Sbjct: 744 KCSRLLIDEAGLLHYGQLLAVAALCGCETVLAFGDTEQISFKSRDVTFKFRHAVI--EYD 801
Query: 369 RKLI---TWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERN 217
R+ + T+R P D ++K K R K T S V S+ + ++S V
Sbjct: 802 RRDVVTETFRCPEDVISAIKKLKRKCGNRDSKYLSWRTQSSVKTSLGMRSVSSVTQVNIE 861
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ YL TQA+KA L ++ D +I T HEAQG + D+V RL L
Sbjct: 862 KHKFYLTMTQADKAALVSRAKDFPVDKTWVDKHIKTVHEAQGVSVDHVVLVRLKSVKCDL 921
[101][TOP]
>UniRef100_Q9DJM0 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM0_9CLOS
Length = 371
Score = 84.0 bits (206), Expect = 8e-15
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 18/180 (10%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 233
[102][TOP]
>UniRef100_Q8QZF3 126 kDa protein n=1 Tax=Pepper mild mottle virus RepID=Q8QZF3_9VIRU
Length = 1117
Score = 84.0 bits (206), Expect = 8e-15
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R +F
Sbjct: 889 SFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + K + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISKQSP-----HLLVSLS 1076
[103][TOP]
>UniRef100_Q5DWU9 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q5DWU9_9VIRU
Length = 1612
Score = 84.0 bits (206), Expect = 8e-15
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R +F
Sbjct: 889 SFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + K + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISKQSP-----HLLVSLS 1076
[104][TOP]
>UniRef100_Q4W8Q6 126k protein n=1 Tax=Pepper mild mottle virus RepID=Q4W8Q6_9VIRU
Length = 1117
Score = 84.0 bits (206), Expect = 8e-15
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R +F
Sbjct: 889 SFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + K + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISKQSP-----HLLVSLS 1076
[105][TOP]
>UniRef100_Q1XG51 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q1XG51_9VIRU
Length = 1612
Score = 84.0 bits (206), Expect = 8e-15
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R +F
Sbjct: 889 SFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + K + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISKQSP-----HLLVSLS 1076
[106][TOP]
>UniRef100_A4PE19 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=A4PE19_9VIRU
Length = 1612
Score = 84.0 bits (206), Expect = 8e-15
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R +F
Sbjct: 889 SFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + K + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISKQSP-----HLLVSLS 1076
[107][TOP]
>UniRef100_P29098 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain
Spain) RepID=RDRP_PMMVS
Length = 1612
Score = 84.0 bits (206), Expect = 8e-15
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R +F
Sbjct: 889 SFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + K + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISKQSP-----HLLVSLS 1076
[108][TOP]
>UniRef100_P89657 Replicase small subunit n=1 Tax=Pepper mild mottle virus (strain
Japan) RepID=RDRP_PMMVJ
Length = 1612
Score = 84.0 bits (206), Expect = 8e-15
Identities = 66/202 (32%), Positives = 104/202 (51%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ Q RL DE + H G V ++ CSE +GDT+QIP+++R +F
Sbjct: 889 SFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQIPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + K + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISKQSP-----HLLVSLS 1076
[109][TOP]
>UniRef100_Q9WID7 p349 protein n=1 Tax=Citrus tristeza virus RepID=Q9WID7_9CLOS
Length = 3115
Score = 83.6 bits (205), Expect = 1e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2771 SYLMNHLRLTTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 2830
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 2831 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATTNTGSVGKSSVSIEV 2885
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2886 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 2943
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2944 ---RLVRCKYQEDT---PFCSDNHVVVALT 2967
[110][TOP]
>UniRef100_Q9DJS0 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJS0_9CLOS
Length = 371
Score = 83.6 bits (205), Expect = 1e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANIGSVGKSSVSIEV 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[111][TOP]
>UniRef100_Q9DJM2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJM2_9CLOS
Length = 370
Score = 83.6 bits (205), Expect = 1e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 60 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 119
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S+ +
Sbjct: 120 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGGVGKSSVSIEI 174
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 175 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQGETYKKV 232
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 233 ---RLVRCKYQEDT---PFCSDNHVVVALT 256
[112][TOP]
>UniRef100_A1YLW4 Replicase (Fragment) n=1 Tax=Grapevine leafroll-associated virus 1
RepID=A1YLW4_9CLOS
Length = 381
Score = 83.6 bits (205), Expect = 1e-14
Identities = 65/194 (33%), Positives = 93/194 (47%), Gaps = 16/194 (8%)
Frame = -3
Query: 534 IFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL---TGKVERK 364
+ DE ++ H G+ G EVI +GD QIPF++R +FV + + +E
Sbjct: 146 LIDEVYMLHKGMFQLTVAAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYT 205
Query: 363 LITWRSPADATYCLEKY-------FYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL 205
I++R PAD Y L Y N ++R LRS E VPI +P +
Sbjct: 206 DISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADV 265
Query: 204 YLCHTQAEKAVLK---AQTHL---KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGR 43
YL TQ EKA ++ A+ + K ++ TTHEAQGKT+ +V RL + + T R
Sbjct: 266 YLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFT-R 324
Query: 42 DPINGPCHGLVALS 1
P H +VALS
Sbjct: 325 KP-----HIVVALS 333
[113][TOP]
>UniRef100_Q9DJQ8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ8_9CLOS
Length = 371
Score = 83.2 bits (204), Expect = 1e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L ECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVGECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[114][TOP]
>UniRef100_Q9DJP8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP8_9CLOS
Length = 369
Score = 83.2 bits (204), Expect = 1e-14
Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 59 SYLMNHIRLKTDLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSRQIHYIHRNDLGVSL 118
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 119 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEV 173
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
N V +++A Y+ +TQAEK L Q HL K + T HE QG T+ V
Sbjct: 174 TNGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPVVNTVHEVQGDTYKKV 231
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 232 ---RLVRCKYQEDT---PFCSDNHVVVALT 255
[115][TOP]
>UniRef100_B2C4F9 Methyl transferase/helicase n=1 Tax=Grapevine leafroll-associated
virus 3 RepID=B2C4F9_9CLOS
Length = 2237
Score = 83.2 bits (204), Expect = 1e-14
Identities = 63/192 (32%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 364
+R++ DE ++ H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063
Query: 363 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 214
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 213 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+YLC TQ EK+ +K KG + + T HEAQGKTF +V R + SL T +
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQP- 2182
Query: 36 INGPCHGLVALS 1
H LV LS
Sbjct: 2183 -----HILVGLS 2189
[116][TOP]
>UniRef100_B3FQ64 Polyprotein (Fragment) n=1 Tax=Grapevine leafroll-associated virus 3
RepID=B3FQ64_9CLOS
Length = 2233
Score = 82.8 bits (203), Expect = 2e-14
Identities = 63/192 (32%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 364
+R++ DE ++ H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVYMMHQGLLQLGVFAIGASEGLFFGDINQIPFINREKVFRMDCAAFVPKKESV 2063
Query: 363 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 214
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSVTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 213 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+YLC TQ EK+ +K KG + + T HEAQGKTF +V R SL T +
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKNADDSLFTKQP- 2182
Query: 36 INGPCHGLVALS 1
H LV LS
Sbjct: 2183 -----HILVGLS 2189
[117][TOP]
>UniRef100_A0SEL1 126 kDa replicase n=1 Tax=Maracuja mosaic virus RepID=A0SEL1_9VIRU
Length = 1103
Score = 82.8 bits (203), Expect = 2e-14
Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 7/199 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF- 400
S+L++ V+ + DE + H G++ + C + FGDT+QIPF++R +F +
Sbjct: 876 SFLINRVPVRFDTVWVDEGLMVHTGVIQFSRLRTNCKRMYVFGDTKQIPFINRVMTFDYP 935
Query: 399 ---RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPI-NSPV 232
R K+ +E + +T R PAD T L + + V T S LRS++ + + V
Sbjct: 936 ECLRSLKV-NSIETRSVTKRCPADVTVYLSSQYESH---VLTTSNTLRSVDAQLLKGAAV 991
Query: 231 SVERNT--NALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
R T N + TQA+KA+LK ++ + T HE QG TFD V R T T
Sbjct: 992 LTPRETVLNGKIVTFTQADKALLKKNGYI----GVNTVHEVQGDTFDEVSLVRATPTPVG 1047
Query: 57 LTTGRDPINGPCHGLVALS 1
+ P H LVALS
Sbjct: 1048 IIAKDSP-----HVLVALS 1061
[118][TOP]
>UniRef100_Q91E35 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q91E35_9VIRU
Length = 1612
Score = 82.4 bits (202), Expect = 2e-14
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ + Q RL DE + H G V ++ CSE +GDT+QIP+++R +F
Sbjct: 889 SFLMNYGRGQCQFKRLFLDEGLMLHPGCVNFLVGMSLCSEAFIYGDTQQIPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + + + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDVVETRRTTLRCPADITFFLNQRY---EGQVMCASSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISRQSP-----HLLVSLS 1076
[119][TOP]
>UniRef100_P27752 Methyltransferase n=1 Tax=Cowpea chlorotic mottle virus
RepID=ORF1A_CCMV
Length = 958
Score = 82.4 bits (202), Expect = 2e-14
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 370
+ +RL+ DE L H G + A A L C V+ FGDTEQI F SR+ +F ++ L
Sbjct: 745 RCKRLLVDEAGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-S 803
Query: 369 RKLI--TWRSPADATYCLEKYFYKNKRPV-----KTNSRVLRSIEVVPINSPVSVERNTN 211
R ++ TWR P D ++ R K++S+V RSI I SP+ V +
Sbjct: 804 RDIVTETWRCPQDVISAVQTLKRGGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSRE 863
Query: 210 ALYLCHTQAEKAVLKAQT-HLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
YL TQA+KA L ++ D +I T HEAQG + D+ RL T L
Sbjct: 864 KFYLTMTQADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDL 922
[120][TOP]
>UniRef100_O71188 P_protease/methyl transferase/helicase (Fragment) n=2 Tax=Grapevine
leafroll-associated virus 3 RepID=O71188_9CLOS
Length = 2233
Score = 82.0 bits (201), Expect = 3e-14
Identities = 63/192 (32%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERK 364
+R++ DE + H GL+ G SE + FGD QIPF++R F K E
Sbjct: 2004 KRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESV 2063
Query: 363 LIT---WRSPADATYCLE-------KYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNT 214
+ T +R P D Y L + Y K + V+RS+ PI + V
Sbjct: 2064 VYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEIN 2123
Query: 213 NALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDP 37
+YLC TQ EK+ +K KG + + T HEAQGKTF +V R + SL T +
Sbjct: 2124 ADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQP- 2182
Query: 36 INGPCHGLVALS 1
H LV LS
Sbjct: 2183 -----HILVGLS 2189
[121][TOP]
>UniRef100_Q9DJT4 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT4_9CLOS
Length = 371
Score = 82.0 bits (201), Expect = 3e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD+EQI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSEQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQENT---PFSSKNHIVVALT 257
[122][TOP]
>UniRef100_Q9DJL9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL9_9CLOS
Length = 371
Score = 82.0 bits (201), Expect = 3e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 121 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE Q +T+ V
Sbjct: 176 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVGRTKAVPIVNTVHEVQEETYKKV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[123][TOP]
>UniRef100_Q65661 1a protein n=1 Tax=Brome mosaic virus RepID=Q65661_BMV
Length = 961
Score = 82.0 bits (201), Expect = 3e-14
Identities = 67/179 (37%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Frame = -3
Query: 540 RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL 361
RL+ DE L H G + A L+ CS+V+ FGDTEQI F SR+ F H L K +R+
Sbjct: 751 RLLVDEAGLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRD 808
Query: 360 I---TWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNA 208
+ T+R P D + K R K + S+V RS+ I S + V + N
Sbjct: 809 VVHKTYRCPQDVIAAVNLLKRKCGNRDTKYQSWTSESKVSRSLAKRRITSVLQVTIDPNR 868
Query: 207 LYLCHTQAEKAVLKAQTHLKGC--------DNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
YL TQA+KA L QT K +I T HEAQG + DNV RL T L
Sbjct: 869 TYLTMTQADKAAL--QTRAKDFPVSKDWIDGHIKTVHEAQGISVDNVTLVRLKSTKCDL 925
[124][TOP]
>UniRef100_Q5I2N9 Replicase large subunit n=2 Tax=Pepper mild mottle virus
RepID=Q5I2N9_9VIRU
Length = 1612
Score = 82.0 bits (201), Expect = 3e-14
Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 10/202 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQ--RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV 403
S+LM+ Q RL DE + H G V ++ CSE +GDT+Q P+++R +F
Sbjct: 889 SFLMNYGRGPCQYKRLFLDEGLMLHPGCVNFLVGMSLCSEAFVYGDTQQTPYINRVATFP 948
Query: 402 FRHHKL---TGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSI--EVV---P 247
+ H VE + T R PAD T+ L + K + V S V RS+ EV+
Sbjct: 949 YPKHLSQLEVDAVETRRTTLRCPADITFFLNQ---KYEGQVMCTSSVTRSVSHEVIQGAA 1005
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRT 67
+ +PVS + + TQ++K++L + +G +++ T HE QG+TF++V RLT T
Sbjct: 1006 VMNPVS--KPLKGKVITFTQSDKSLLLS----RGYEDVHTVHEVQGETFEDVSLVRLTPT 1059
Query: 66 STSLTTGRDPINGPCHGLVALS 1
+ + + P H LV+LS
Sbjct: 1060 PVGIISKQSP-----HLLVSLS 1076
[125][TOP]
>UniRef100_D0EWY6 194 kDa readthrough protein n=2 Tax=Tobacco rattle virus
RepID=D0EWY6_9VIRU
Length = 1707
Score = 82.0 bits (201), Expect = 3e-14
Identities = 60/170 (35%), Positives = 79/170 (46%), Gaps = 4/170 (2%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---VER 367
L FDE + HAG+VY A +A I GD QI F R R L GK V
Sbjct: 973 LHFDEALMAHAGMVYFCAQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTE 1032
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCHTQ 187
K T+RSPAD L K++ + V+T++ S+ V I S V A Y+ Q
Sbjct: 1033 KRETYRSPADVAAVLNKFYTGD---VRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQ 1089
Query: 186 AEKAVLKAQTHL-KGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
+EK L L K + T HE+QG+TF +V R T S+ GR+
Sbjct: 1090 SEKKELMNLLALRKVAAKVSTVHESQGETFKDVVLVRTKPTDDSIARGRE 1139
[126][TOP]
>UniRef100_A0SL67 1a n=1 Tax=Brome mosaic virus RepID=A0SL67_BMV
Length = 961
Score = 82.0 bits (201), Expect = 3e-14
Identities = 67/179 (37%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Frame = -3
Query: 540 RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL 361
RL+ DE L H G + A L+ CS+V+ FGDTEQI F SR+ F H L K +R+
Sbjct: 751 RLLVDEAGLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--KYDRRD 808
Query: 360 I---TWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNA 208
+ T+R P D + K R K + S+V RS+ I S + V + N
Sbjct: 809 VVHKTYRCPQDVIAAVNLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSVLQVTIDPNR 868
Query: 207 LYLCHTQAEKAVLKAQTHLKGC--------DNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
YL TQA+KA L QT K +I T HEAQG + DNV RL T L
Sbjct: 869 TYLTMTQADKAAL--QTRAKDFPVSKDWIDGHIKTVHEAQGISVDNVALVRLKSTKCDL 925
[127][TOP]
>UniRef100_UPI000019AB7D polyprotein n=2 Tax=Cucurbit yellow stunting disorder virus
RepID=UPI000019AB7D
Length = 2482
Score = 81.6 bits (200), Expect = 4e-14
Identities = 66/186 (35%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R
Sbjct: 1736 SILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICR 1795
Query: 396 HHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVV 250
+HK LT K I++R P D Y L Y N PV N VLRS+EV
Sbjct: 1796 YHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVE 1855
Query: 249 PINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVY 88
PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1856 PITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVY 1911
Query: 87 FCRLTR 70
RL +
Sbjct: 1912 LYRLRK 1917
[128][TOP]
>UniRef100_Q8JUV0 1a n=1 Tax=Cucurbit yellow stunting disorder virus RepID=Q8JUV0_9CLOS
Length = 1977
Score = 81.6 bits (200), Expect = 4e-14
Identities = 66/186 (35%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R
Sbjct: 1736 SILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICR 1795
Query: 396 HHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVV 250
+HK LT K I++R P D Y L Y N PV N VLRS+EV
Sbjct: 1796 YHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVE 1855
Query: 249 PINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVY 88
PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1856 PITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVY 1911
Query: 87 FCRLTR 70
RL +
Sbjct: 1912 LYRLRK 1917
[129][TOP]
>UniRef100_Q84918 195K protein n=2 Tax=Pepper ringspot virus RepID=Q84918_9VIRU
Length = 1698
Score = 81.6 bits (200), Expect = 4e-14
Identities = 59/172 (34%), Positives = 82/172 (47%), Gaps = 4/172 (2%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK---V 373
+ L FDE + HAG+V+ A LA V+ GD +QI + R + L G+ V
Sbjct: 963 ETLHFDEALMAHAGMVFFCAQLAKAKLVVCQGDQKQIAYKPRVAQVNLKFLSLVGRFDEV 1022
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALYLCH 193
E K +T+R P D L++ FY K V T + VLRS+ I+S V YL
Sbjct: 1023 EEKRLTYRCPIDVALSLDR-FYTGK--VVTKNNVLRSMTTKRISSKEQVTMEKGVQYLTF 1079
Query: 192 TQAEKAVLKAQTHLKGCD-NIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRD 40
Q+EK + L+ + + T HEAQGKTF V R T L G++
Sbjct: 1080 LQSEKKEIATMLALRKIEAAVNTVHEAQGKTFKKVILVRTKVTDDVLARGQE 1131
[130][TOP]
>UniRef100_Q70UT1 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=Q70UT1_9CLOS
Length = 2483
Score = 81.6 bits (200), Expect = 4e-14
Identities = 66/186 (35%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R
Sbjct: 1737 SILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICR 1796
Query: 396 HHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVV 250
+HK LT K I++R P D Y L Y N PV N VLRS+EV
Sbjct: 1797 YHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVE 1856
Query: 249 PINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVY 88
PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1857 PITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVY 1912
Query: 87 FCRLTR 70
RL +
Sbjct: 1913 LYRLRK 1918
[131][TOP]
>UniRef100_A5JM41 p227 n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=A5JM41_9CLOS
Length = 1978
Score = 81.6 bits (200), Expect = 4e-14
Identities = 66/186 (35%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R
Sbjct: 1737 SILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICR 1796
Query: 396 HHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVV 250
+HK LT K I++R P D Y L Y N PV N VLRS+EV
Sbjct: 1797 YHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVE 1856
Query: 249 PINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVY 88
PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1857 PITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVY 1912
Query: 87 FCRLTR 70
RL +
Sbjct: 1913 LYRLRK 1918
[132][TOP]
>UniRef100_A5JM40 Polyprotein n=1 Tax=Cucurbit yellow stunting disorder virus
RepID=A5JM40_9CLOS
Length = 2483
Score = 81.6 bits (200), Expect = 4e-14
Identities = 66/186 (35%), Positives = 90/186 (48%), Gaps = 17/186 (9%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S LM K +L DE F+ H+G + L C+ + +GD QIPF++R + + R
Sbjct: 1737 SILMKNEVNKIDKLYCDEIFMVHSGEWLSVCALYDCNTIRCYGDRNQIPFINRVANTICR 1796
Query: 396 HHK---LTGKVERKLITWRSPADATYCLE-------KYFYKN-KRPVKTNSRVLRSIEVV 250
+HK LT K I++R P D Y L Y N PV N VLRS+EV
Sbjct: 1797 YHKDIYLTFKTIDDNISYRCPVDVCYLLSNLKDDTGNLLYPNGVYPVGDNRNVLRSMEVE 1856
Query: 249 PINSPVSVERNTNALYLCHTQAEK-----AVLKAQTHLKG-CDNIFTTHEAQGKTFDNVY 88
PI S + + N + T+ E+ A+ KA+ L G C N T HE QG TF +VY
Sbjct: 1857 PITSVDTYGFDGNGKNISFTRPEREEIDQAIQKAR--LTGMCVN--TVHEVQGGTFPHVY 1912
Query: 87 FCRLTR 70
RL +
Sbjct: 1913 LYRLRK 1918
[133][TOP]
>UniRef100_Q88920 Replicase small subunit n=1 Tax=Turnip vein-clearing virus
RepID=RDRP_TVCV
Length = 1601
Score = 81.6 bits (200), Expect = 4e-14
Identities = 65/198 (32%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM S +RL DE + H G V L+ C +GDT+QIPF+ R +F +
Sbjct: 881 SFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTKQIPFICRVANFPYP 940
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + +T R PAD TY L K K V S V RS++ + ++
Sbjct: 941 AHFAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVRGKGAL 997
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 998 NPITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYEKTAIVRLTSTPLEI 1053
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1054 ISSASP-----HVLVALT 1066
[134][TOP]
>UniRef100_P30738 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain Korean)
RepID=RDRP_TMVKR
Length = 1616
Score = 81.6 bits (200), Expect = 4e-14
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V T++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVTMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[135][TOP]
>UniRef100_P90211 Replicase small subunit n=1 Tax=Obuda pepper virus RepID=RDRP_TMOB
Length = 1616
Score = 81.6 bits (200), Expect = 4e-14
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH---KLTGKV 373
+RL DE + H G VY L+ C+E FGDT+QIP+++R +F F H + +
Sbjct: 900 KRLFVDEGLMLHPGCVYFLVKLSLCNEAFVFGDTQQIPYINRVQNFPFPQHFSKLIVDET 959
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNAL---Y 202
E++ T R P D T+ L + + V T S+ RS+ + + + T L
Sbjct: 960 EKRRTTLRCPVDVTHFLNQCY---DGAVTTTSKTQRSVGLEVVGGAAVMNPVTKPLKGKI 1016
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
+ TQ++K + + +G ++ T HE QG+T++ V RLT T + + P
Sbjct: 1017 VTFTQSDKLTMLS----RGYQDVNTVHEIQGETYEEVSLVRLTPTPIHIISRESP----- 1067
Query: 21 HGLVALS 1
H LV L+
Sbjct: 1068 HVLVGLT 1074
[136][TOP]
>UniRef100_Q8BEM6 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM6_CCMV
Length = 959
Score = 81.3 bits (199), Expect = 5e-14
Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 370
+ +RL+ DE L H G + A A L C V+ FGDTEQI F SR+ +F ++ L
Sbjct: 745 QCKRLLVDEAGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-S 803
Query: 369 RKLI--TWRSPADATYCLEKYFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNT 214
R ++ TWR P D ++ K K++S+V RSI I SP+ V +
Sbjct: 804 RDIVTETWRCPQDVISAVQTLKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSR 863
Query: 213 NALYLCHTQAEKAVLKAQT-HLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
YL TQA+KA L ++ D +I T HEAQG + D+ RL T L
Sbjct: 864 EKFYLTMTQADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDL 923
[137][TOP]
>UniRef100_Q8BEM3 1a protein n=1 Tax=Cowpea chlorotic mottle virus RepID=Q8BEM3_CCMV
Length = 959
Score = 81.3 bits (199), Expect = 5e-14
Identities = 62/180 (34%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVE 370
+ +RL+ DE L H G + A A L C V+ FGDTEQI F SR+ +F ++ L
Sbjct: 745 QCKRLLVDEAGLLHYGQLLAVAALCKCQSVLAFGDTEQISFKSRDATFRLKYGDLQFD-S 803
Query: 369 RKLI--TWRSPADATYCLEKYFYKNKRPV------KTNSRVLRSIEVVPINSPVSVERNT 214
R ++ TWR P D ++ K K++S+V RSI I SP+ V +
Sbjct: 804 RDIVTETWRCPQDVISAVQTLKKKAGNRTSKYLGWKSHSKVSRSISHKEIASPLQVTLSR 863
Query: 213 NALYLCHTQAEKAVLKAQT-HLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
YL TQA+KA L ++ D +I T HEAQG + D+ RL T L
Sbjct: 864 EKFYLTMTQADKAALVSRAKDFPELDKAWIEKHIKTVHEAQGVSVDHAVLVRLKSTKCDL 923
[138][TOP]
>UniRef100_Q88604 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=Q88604_9VIRU
Length = 1601
Score = 81.3 bits (199), Expect = 5e-14
Identities = 65/198 (32%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM S +RL DE + H G V L+ C +GDT+QIPF+ R +F +
Sbjct: 881 SFLMHPSRRVFKRLFIDEGLMLHTGCVNFLLLLSQCDVAYVYGDTQQIPFICRVANFPYP 940
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + +T R PAD TY L K K V S V RS++ + ++
Sbjct: 941 AHFAKLVADEKEVRRVTLRCPADVTYFLNK---KYDGAVMCTSAVERSVKAEVVRGKGAL 997
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 998 NPITLPLEGKILTFTQADKFELLE----KGYKDVNTVHEVQGETYEKTAIVRLTSTPLEI 1053
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1054 ISRASP-----HVLVALT 1066
[139][TOP]
>UniRef100_Q6PY89 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q6PY89_9VIRU
Length = 1612
Score = 81.3 bits (199), Expect = 5e-14
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +L DE + H G V L+ C E + FGDTEQIPF++R +F +
Sbjct: 880 SFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYP 939
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H T E + ++ R PAD T+ + K V S V+RS++ +
Sbjct: 940 KHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTSDVIRSVDAEVVRGKGVF 996
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNVYFCRLTRTST 61
+ L + TQ++KA LK + + + + T HE QG+TF++V RLT T
Sbjct: 997 NPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEVNTVHEIQGETFEDVSVVRLTPTPL 1056
Query: 60 SLTTGRDPINGPCHGLVALS 1
L + P H LVAL+
Sbjct: 1057 ELISKSSP-----HVLVALT 1071
[140][TOP]
>UniRef100_A3RF53 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=A3RF53_9VIRU
Length = 1616
Score = 81.3 bits (199), Expect = 5e-14
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V +++ C +GDT+QIP+++R F + H K+ +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVSMSLCDIAYVYGDTQQIPYINRVSGFPYPAHFSKIEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L K + + V + S V +S+ ++ ++ + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNKRY---EGFVMSTSSVKKSVSQEMVSGAATINPVSKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G + T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSEVHTVHEVQGETYSDVSLVRLTPTPISIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[141][TOP]
>UniRef100_A0PA51 Replicase large subunit n=2 Tax=Cucumber mottle virus
RepID=A0PA51_9VIRU
Length = 1672
Score = 81.3 bits (199), Expect = 5e-14
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF--- 406
S++M+ K L DE + H GL+ + +AG +V FGD +QIPF++R +F
Sbjct: 940 SFIMNKKPYKFTTLWVDEGLMVHTGLLNFSINIAGVKKVFVFGDRKQIPFINRVMNFDYP 999
Query: 405 VFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
V + VER+ +T R P D T L + + V T S V S+ + P +
Sbjct: 1000 VELSKLIVDNVERRDVTKRCPVDVTKFLNEVY---PNAVSTTSDVFYSLNAKRVAGPGLL 1056
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
A + TQ++K L+ G ++ T HE QG+TFD V R T T L
Sbjct: 1057 RPELTAFKGKIVTFTQSDKFTLEK----AGYTDVNTVHEIQGETFDEVSLVRATATPIGL 1112
Query: 54 TTGRDPINGPCHGLVALS 1
T + P H LVAL+
Sbjct: 1113 ITRKSP-----HVLVALT 1125
[142][TOP]
>UniRef100_Q9DJU2 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJU2_9CLOS
Length = 371
Score = 80.9 bits (198), Expect = 7e-14
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQENT---PFSSKNHIVVALT 257
[143][TOP]
>UniRef100_UPI0000164AC8 401-kDa viral polyprotein n=2 Tax=Citrus tristeza virus
RepID=UPI0000164AC8
Length = 3582
Score = 80.5 bits (197), Expect = 9e-14
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2780 SYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSF 2839
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 2840 VADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 2894
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2895 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRV 2952
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2953 ---RLVRFKYQEDT---PFSSKNHIVVALT 2976
[144][TOP]
>UniRef100_Q9DJT5 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT5_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 9e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ V
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSVEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[145][TOP]
>UniRef100_Q9DJR5 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR5_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 9e-14
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[146][TOP]
>UniRef100_Q9DJR4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR4_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 9e-14
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[147][TOP]
>UniRef100_Q9DJR3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR3_9CLOS
Length = 371
Score = 80.5 bits (197), Expect = 9e-14
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIAAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICKWLSEFYPRHVATANVGSVGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[148][TOP]
>UniRef100_Q9DJQ1 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJQ1_9CLOS
Length = 370
Score = 80.5 bits (197), Expect = 9e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 60 SYLMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 119
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ S S+ +
Sbjct: 120 LHDIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEI 174
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V ++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 175 INGYDDVPYESDAKYVVYTQAEKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 232
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 233 ---RLVRCKYQEDT---PFCSDNHVVVALT 256
[149][TOP]
>UniRef100_Q91I83 Replication protein n=1 Tax=Tobacco mosaic virus RepID=Q91I83_9VIRU
Length = 1116
Score = 80.5 bits (197), Expect = 9e-14
Identities = 60/187 (32%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE L H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLLLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[150][TOP]
>UniRef100_Q8B3T9 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=Q8B3T9_9CLOS
Length = 3122
Score = 80.5 bits (197), Expect = 9e-14
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2778 SYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 2837
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 2838 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 2892
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2893 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRV 2950
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2951 ---RLVRFKYQEDT---PFSSKNHIVVALT 2974
[151][TOP]
>UniRef100_Q66237 349-kDa viral polyprotein n=1 Tax=Citrus tristeza virus
RepID=Q66237_9CLOS
Length = 3124
Score = 80.5 bits (197), Expect = 9e-14
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2780 SYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSF 2839
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 2840 VADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 2894
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2895 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRV 2952
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2953 ---RLVRFKYQEDT---PFSSKNHIVVALT 2976
[152][TOP]
>UniRef100_Q3YFN1 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q3YFN1_9VIRU
Length = 1617
Score = 80.5 bits (197), Expect = 9e-14
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +L DE + H G V L+ C E + FGDTEQIPF++R +F +
Sbjct: 880 SFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYP 939
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H T E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 940 KHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVRGKGVF 996
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNVYFCRLTRTST 61
+ L + TQ++KA LK + + + I T HE QG+TF++V RLT T
Sbjct: 997 NPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPL 1056
Query: 60 SLTTGRDPINGPCHGLVALS 1
L + P H LVAL+
Sbjct: 1057 ELISKSSP-----HVLVALT 1071
[153][TOP]
>UniRef100_Q0E5F1 Replicase large subunit n=2 Tax=Brugmansia mild mottle virus
RepID=Q0E5F1_9VIRU
Length = 1612
Score = 80.5 bits (197), Expect = 9e-14
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 6/189 (3%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT---G 379
+ + L DE + H G V +L C FGDT+QIP+++R +F + H T
Sbjct: 898 RVENLFIDEGLMLHPGCVNFLVSLTMCDRAFVFGDTQQIPYINRVQNFPYPKHFATLEVD 957
Query: 378 KVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIE---VVPINSPVSVERNTNA 208
+VE + +T R PAD T+ L + + V +S V +S+ +V S + +
Sbjct: 958 EVETRRVTMRCPADVTHFLNERY---SGTVMCSSGVQKSVSSEILVGAGSVNPITKPLKG 1014
Query: 207 LYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPING 28
L TQ++K L +G +++ T HE QG+T+++V RLT T +L + P
Sbjct: 1015 KILTFTQSDKFALTE----RGYEDVNTVHEVQGETYEDVSVVRLTPTPLALISRDSP--- 1067
Query: 27 PCHGLVALS 1
H LV LS
Sbjct: 1068 --HVLVCLS 1074
[154][TOP]
>UniRef100_D0EAN1 348 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAN1_9CLOS
Length = 3113
Score = 80.5 bits (197), Expect = 9e-14
Identities = 66/210 (31%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2769 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 2828
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
SF+ H++ G+V ++R P D L K + ++ S S+ +
Sbjct: 2829 LHDIDSFIQPEHRVYGEV-----SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEI 2883
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2884 INGYEDVPYEGDAKYIVYTQAEKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 2941
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R G P H +VAL+
Sbjct: 2942 ---RLVRCKYQ---GDTPFCSDNHVVVALT 2965
[155][TOP]
>UniRef100_C0L2T4 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2T4_9VIRU
Length = 1648
Score = 80.5 bits (197), Expect = 9e-14
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD EQIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAEQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[156][TOP]
>UniRef100_B8YDL1 p349 protein n=1 Tax=Citrus tristeza virus RepID=B8YDL1_9CLOS
Length = 3113
Score = 80.5 bits (197), Expect = 9e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2769 SYLMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 2828
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ S S+ +
Sbjct: 2829 LHDIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEI 2883
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V ++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2884 INGYDDVPYESDAKYVVYTQAEKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 2941
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2942 ---RLVRCKYQEDT---PFCSDNHVVVALT 2965
[157][TOP]
>UniRef100_B8PRP6 Polyprotein p349 n=1 Tax=Citrus tristeza virus RepID=B8PRP6_9CLOS
Length = 3113
Score = 80.5 bits (197), Expect = 9e-14
Identities = 65/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 2769 SYLMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 2828
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ S S+ +
Sbjct: 2829 LHDIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEI 2883
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V ++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2884 INGYDDVPYESDAKYVVYTQAEKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 2941
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 2942 ---RLVRCKYQEDT---PFCSDNHVVVALT 2965
[158][TOP]
>UniRef100_B5THC9 p1a n=1 Tax=Citrus tristeza virus RepID=B5THC9_9CLOS
Length = 3122
Score = 80.5 bits (197), Expect = 9e-14
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2778 SYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 2837
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 2838 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 2892
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2893 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRV 2950
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2951 ---RLVRFKYQEDT---PFSSKNHIVVALT 2974
[159][TOP]
>UniRef100_P89659 Replicase small subunit n=3 Tax=Odontoglossum ringspot virus
RepID=RDRP_ORSVC
Length = 1612
Score = 80.5 bits (197), Expect = 9e-14
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +L DE + H G V L+ C E + FGDTEQIPF++R +F +
Sbjct: 880 SFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYP 939
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H T E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 940 KHFATLVYDHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVRGKGVF 996
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNVYFCRLTRTST 61
+ L + TQ++KA LK + + + I T HE QG+TF++V RLT T
Sbjct: 997 NPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPL 1056
Query: 60 SLTTGRDPINGPCHGLVALS 1
L + P H LVAL+
Sbjct: 1057 ELISKSSP-----HVLVALT 1071
[160][TOP]
>UniRef100_P03588 Methyltransferase n=1 Tax=Brome mosaic virus RepID=ORF1A_BMV
Length = 961
Score = 80.5 bits (197), Expect = 9e-14
Identities = 66/179 (36%), Positives = 86/179 (48%), Gaps = 17/179 (9%)
Frame = -3
Query: 540 RLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKL 361
RL+ DE L H G + A L+ CS+V+ FGDTEQI F SR+ F H L + +R+
Sbjct: 751 RLLVDEAGLLHYGQLLVVAALSKCSQVLAFGDTEQISFKSRDAGFKLLHGNL--QYDRRD 808
Query: 360 I---TWRSPADATYCLEKYFYK-NKRPVK-----TNSRVLRSIEVVPINSPVSVERNTNA 208
+ T+R P D + K R K + S+V RS+ I S + V + N
Sbjct: 809 VVHKTYRCPQDVIAAVNLLKRKCGNRDTKYQSWTSESKVSRSLTKRRITSGLQVTIDPNR 868
Query: 207 LYLCHTQAEKAVLKAQTHLKGC--------DNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
YL TQA+KA L QT K +I T HEAQG + DNV RL T L
Sbjct: 869 TYLTMTQADKAAL--QTRAKDFPVSKDWIDGHIKTVHEAQGISVDNVTLVRLKSTKCDL 925
[161][TOP]
>UniRef100_Q9DJT7 Putative uncharacterized protein (Fragment) n=2 Tax=Citrus tristeza
virus RepID=Q9DJT7_9CLOS
Length = 371
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[162][TOP]
>UniRef100_Q9DJT6 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT6_9CLOS
Length = 301
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[163][TOP]
>UniRef100_Q9DJT2 Putative uncharacterized protein (Fragment) n=4 Tax=Citrus tristeza
virus RepID=Q9DJT2_9CLOS
Length = 371
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[164][TOP]
>UniRef100_Q9DJT1 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT1_9CLOS
Length = 371
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[165][TOP]
>UniRef100_Q9DJT0 Putative uncharacterized protein (Fragment) n=1 Tax=Citrus tristeza
virus RepID=Q9DJT0_9CLOS
Length = 366
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 56 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 115
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 116 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 170
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 171 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 228
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 229 ---RLVRFKYQEDT---PFSSKNHIVVALT 252
[166][TOP]
>UniRef100_Q9DJS7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS7_9CLOS
Length = 371
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[167][TOP]
>UniRef100_Q9DJR7 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR7_9CLOS
Length = 371
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[168][TOP]
>UniRef100_Q9DJQ9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJQ9_9CLOS
Length = 371
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[169][TOP]
>UniRef100_Q9DJN9 Polyprotein (Fragment) n=9 Tax=Citrus tristeza virus
RepID=Q9DJN9_9CLOS
Length = 371
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[170][TOP]
>UniRef100_C9EFC7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C9EFC7_9VIRU
Length = 1648
Score = 80.1 bits (196), Expect = 1e-13
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ IT R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[171][TOP]
>UniRef100_C9EFC3 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C9EFC3_9VIRU
Length = 1648
Score = 80.1 bits (196), Expect = 1e-13
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ IT R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[172][TOP]
>UniRef100_C3V8Q5 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C3V8Q5_9VIRU
Length = 1648
Score = 80.1 bits (196), Expect = 1e-13
Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ IT R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[173][TOP]
>UniRef100_B9VB56 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB56_9CLOS
Length = 3122
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2778 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 2837
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 2838 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVSIEE 2892
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2893 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2950
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2951 ---RLVRFKYQEDT---PFSSKNHIVVALT 2974
[174][TOP]
>UniRef100_B9VB08 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB08_9CLOS
Length = 3116
Score = 80.1 bits (196), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2772 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 2831
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 2832 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 2886
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2887 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2945 ---RLVRFKYQEDT---PFSSKNHIVVALT 2968
[175][TOP]
>UniRef100_UPI0000161E2A Replicase n=1 Tax=Tobacco mosaic virus RepID=UPI0000161E2A
Length = 1616
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[176][TOP]
>UniRef100_Q9J943 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=Q9J943_9VIRU
Length = 1616
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[177][TOP]
>UniRef100_Q9IBK5 Replicase large subunit n=2 Tax=Tobacco mosaic virus
RepID=Q9IBK5_9VIRU
Length = 1616
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[178][TOP]
>UniRef100_Q9DJS5 Polyprotein (Fragment) n=2 Tax=Citrus tristeza virus
RepID=Q9DJS5_9CLOS
Length = 371
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/210 (31%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
SF+ H++ G+V ++R P D L K + ++ S S+ +
Sbjct: 121 LHDIDSFIQPEHRVYGEV-----SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGYEDVPYEGDAKYIVYTQAEKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[179][TOP]
>UniRef100_Q9DJR9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR9_9CLOS
Length = 371
Score = 79.7 bits (195), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 61 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVXSVGKSSVSIEE 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 234 ---RLVRFKYQEDT---PFSSKNHIVVALT 257
[180][TOP]
>UniRef100_Q9DJL4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJL4_9CLOS
Length = 371
Score = 79.7 bits (195), Expect = 1e-13
Identities = 66/210 (31%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
SF+ H++ G+V ++R P D L K + ++ S S+ +
Sbjct: 121 LHDIDSFIQPEHRVYGEV-----SYRCPWDICEWLSKSYPRHVATANIASVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGYEDVPYEGDAKYIVYTQAEKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[181][TOP]
>UniRef100_Q91I84 Replication protein n=1 Tax=Tobacco mosaic virus RepID=Q91I84_9VIRU
Length = 1116
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[182][TOP]
>UniRef100_Q91I82 129K replicase protein n=1 Tax=Tobacco mosaic virus
RepID=Q91I82_9VIRU
Length = 1116
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[183][TOP]
>UniRef100_C8CJL7 RNA replicase n=2 Tax=Cucumber green mottle mosaic virus
RepID=C8CJL7_9VIRU
Length = 1648
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC FGD +QIPF++R +F +
Sbjct: 918 SFVMNKKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ IT R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYITHRCPRDVTSFLNTIY---KAAVSTTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[184][TOP]
>UniRef100_B9VB20 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB20_9CLOS
Length = 3116
Score = 79.7 bits (195), Expect = 1e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2772 SYLMNHLQLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDFGVSL 2831
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 2832 LHDIDAFIQPEHRIYGEV-----SYRCPWDICERLSEFYPRHVATANVGSVGKSSVSIEE 2886
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2887 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2945 ---RLVRFKYQEDT---PFSSKNHIVVALT 2968
[185][TOP]
>UniRef100_A9EEW7 129K replicase protein n=1 Tax=Tobacco mosaic virus
RepID=A9EEW7_9VIRU
Length = 1116
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[186][TOP]
>UniRef100_O93058 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain OM)
RepID=RDRP_TMVOM
Length = 1616
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[187][TOP]
>UniRef100_P03586 Replicase small subunit n=1 Tax=Tobacco mosaic virus (vulgare)
RepID=RDRP_TMV
Length = 1616
Score = 79.7 bits (195), Expect = 1e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ + + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[188][TOP]
>UniRef100_Q84133 Replicase small subunit n=2 Tax=Odontoglossum ringspot virus
RepID=RDRP_ORSVS
Length = 1612
Score = 79.7 bits (195), Expect = 1e-13
Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF- 400
S+LM +L DE + H G V L+ C E + FGD EQIPF++R +F +
Sbjct: 880 SFLMHLKPKTYNKLFIDEGLMLHTGCVNFLVALSHCREAMVFGDAEQIPFINRVANFPYP 939
Query: 399 RHHKLTGKVERKL--ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
+H + T R++ ++ R PAD T+ + K V + V+RS++ +
Sbjct: 940 KHFRYTCLYHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVRGKGVF 996
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTH--LKGCDNIFTTHEAQGKTFDNVYFCRLTRTST 61
+ L + TQ++KA LK + + + I T HE QG+TF++V RLT T
Sbjct: 997 NPKSKPLKGKIITFTQSDKAELKERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPL 1056
Query: 60 SLTTGRDPINGPCHGLVALS 1
L + P H LVAL+
Sbjct: 1057 ELISKSSP-----HVLVALT 1071
[189][TOP]
>UniRef100_Q9DJS1 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS1_9CLOS
Length = 371
Score = 79.3 bits (194), Expect = 2e-13
Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ + S S+ +
Sbjct: 121 LHDIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPXHVATANIASVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V ++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 176 INGYDDVPYESDAKYVVYTQAEKNEL--QKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[190][TOP]
>UniRef100_Q9DJR8 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJR8_9CLOS
Length = 371
Score = 79.3 bits (194), Expect = 2e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K + L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 61 SYLMNHIHLKTELLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 120
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ S S+ +
Sbjct: 121 LHDIDAFIQPEHRVYGEV-----SYRCPWDICEWLSKFYPRHVATANIASVGKSSVSIEI 175
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V ++A Y+ +TQAEK + Q HL K + T HE QG+T+ V
Sbjct: 176 INGYDDVPYESDAKYVVYTQAEKN--EFQKHLGRLTVGRTKTVPIVNTVHEVQGETYKRV 233
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P H +VAL+
Sbjct: 234 ---RLVRCKYQEDT---PFCSDNHVVVALT 257
[191][TOP]
>UniRef100_Q9DJP4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP4_9CLOS
Length = 366
Score = 79.3 bits (194), Expect = 2e-13
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L+ DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 56 SYLMNHLRLTTQLLLVDECFMVHAGAIGAVXEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 115
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H+ G+V ++R P D L +++ ++ S S+ +
Sbjct: 116 LHDIDAFIQPEHRTYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEE 170
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 171 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 228
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 229 ---RLVRFKYQEDT---PFSSKNHIVVALT 252
[192][TOP]
>UniRef100_Q2XP16 P353 n=1 Tax=Citrus tristeza virus RepID=Q2XP16_9CLOS
Length = 3124
Score = 79.3 bits (194), Expect = 2e-13
Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2780 SYLMNHLRLTTQLLFIDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSF 2839
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L ++ ++ S S+ +
Sbjct: 2840 VADIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFNPRHVATANVGSIGKSSVSIEE 2894
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2895 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRNKVVPIVNTVHEVQGETYKRV 2952
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VALS
Sbjct: 2953 ---RLVRFKYQEDT---PFSSKNHIVVALS 2976
[193][TOP]
>UniRef100_Q98745 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain Rakkyo)
RepID=RDRP_TMVRA
Length = 1616
Score = 79.3 bits (194), Expect = 2e-13
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCDVAYVYGDTQQIPYINRVSGFPYPAHFSKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERNTNALY--- 202
E + T R PAD T+ L + + + V + S V +S+ ++ + + L+
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVVSTSSVKKSVSQEMVSGAAVINPISKPLHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G + T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSEVHTVHEVQGETYSDVSLVRLTPTPISIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[194][TOP]
>UniRef100_Q9YQ08 Replicase small subunit n=1 Tax=Tobacco mosaic virus (strain B395A)
RepID=RDRP_TMVB
Length = 1616
Score = 79.3 bits (194), Expect = 2e-13
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V ++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFIDEGLMLHTGCVNFLVAMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV---SVERNTNALY 202
E + T R PAD T+ L + + + V + S V +S+ + + + ++
Sbjct: 961 ETRRTTLRCPADVTHYLNRRY---EGFVMSTSSVKKSVSQEMVGGAAVINPISKPSHGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ++K L + +G ++ T HE QG+T+ +V RLT T S+ G P
Sbjct: 1018 LTFTQSDKEALLS----RGYSDVHTVHEVQGETYSDVSLVRLTPTPVSIIAGDSP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[195][TOP]
>UniRef100_Q00020 Methyltransferase n=1 Tax=Broad bean mottle virus RepID=ORF1A_BBMV
Length = 966
Score = 79.3 bits (194), Expect = 2e-13
Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKV 373
+ RL+ DE L H G + A A L CSEV+ FGDTEQI F SR+ +F ++ + K
Sbjct: 753 ECHRLLVDEAGLLHYGQLLAVADLCKCSEVLAFGDTEQISFKSRDATFRMKYCNIEYDKR 812
Query: 372 ERKLITWRSPADATYCLEKYFYK-NKRPVKTN-----SRVLRSIEVVPINSPVSVERNTN 211
+ T+R P D ++ K R K N S+V +S+ I S V +
Sbjct: 813 DIVSKTFRCPQDVVSAVKILKRKCANRSSKYNGWVSSSKVEKSLSKSRIVSINQVSMEKH 872
Query: 210 ALYLCHTQAEKAVLKAQTHLKGCD------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
YL T+A+KA L ++ G D N+ T HEAQGK D+V RL T L
Sbjct: 873 KFYLTMTEADKAALCSRAKDVGLDKTWVESNMETVHEAQGKAVDHVVLVRLKSTKCDL 930
[196][TOP]
>UniRef100_Q9IR66 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q9IR66_9VIRU
Length = 1648
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[197][TOP]
>UniRef100_Q8QTJ1 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q8QTJ1_9VIRU
Length = 1648
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[198][TOP]
>UniRef100_Q8QTI9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q8QTI9_9VIRU
Length = 1648
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[199][TOP]
>UniRef100_C0L2T0 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2T0_9VIRU
Length = 1648
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[200][TOP]
>UniRef100_C0L2S6 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C0L2S6_9VIRU
Length = 1648
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[201][TOP]
>UniRef100_B9VB44 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB44_9CLOS
Length = 3121
Score = 79.0 bits (193), Expect = 3e-13
Identities = 64/210 (30%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2777 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 2836
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H + G+V ++R P D L +++ ++ S S+ +
Sbjct: 2837 LHDIDAFIQPEHHIYGEV-----SYRCPWDICEWLSEFYPRHVATTNVGSVGKSSVSIEE 2891
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2892 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2949
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2950 ---RLVRFKYQEDT---PFSSKNHIVVALT 2973
[202][TOP]
>UniRef100_B0FWD9 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=B0FWD9_9VIRU
Length = 1648
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[203][TOP]
>UniRef100_A7KY79 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=A7KY79_9VIRU
Length = 1648
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[204][TOP]
>UniRef100_A0PA59 Replicase large subunit n=2 Tax=Youcai mosaic virus
RepID=A0PA59_9VIRU
Length = 1596
Score = 79.0 bits (193), Expect = 3e-13
Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM + +RL DE + H G V L+ C +GDT+QIPF+ R +F +
Sbjct: 877 SFLMHPPKREFKRLFIDEGLMLHTGCVNFLTLLSHCEVAYVYGDTQQIPFICRVANFPYP 936
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + +T R PAD T+ L K K V S V RS+ + ++
Sbjct: 937 KHFAKLVVDEKEDRRVTLRCPADVTFFLNK---KYDGAVLCTSSVERSVSAEVVRGKGAL 993
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 994 NPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEI 1049
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1050 ISRASP-----HVLVALT 1062
[205][TOP]
>UniRef100_P69514 Replicase small subunit n=1 Tax=Cucumber green mottle mosaic virus
(watermelon strain SH) RepID=RDRP_CGMVS
Length = 1648
Score = 79.0 bits (193), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[206][TOP]
>UniRef100_Q9DJP9 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJP9_9CLOS
Length = 357
Score = 78.6 bits (192), Expect = 3e-13
Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 16/208 (7%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 50 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 109
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 110 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEE 164
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQ------THLKGCDNIFTTHEAQGKTFDNVYF 85
IN V + A Y+ +TQAEK L+ K + T HE QG+T+ V
Sbjct: 165 INGCDDVPYDKAAKYIVYTQAEKNDLQKHHGRLTVGRTKVVPIVNTVHEVQGETYKRV-- 222
Query: 84 CRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 223 -RLVRFKYQEDT---PFSSKNHIVVALT 246
[207][TOP]
>UniRef100_Q14V59 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=Q14V59_9VIRU
Length = 1648
Score = 78.6 bits (192), Expect = 3e-13
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFIFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[208][TOP]
>UniRef100_D0EAL9 349 kDa polyprotein n=1 Tax=Citrus tristeza virus RepID=D0EAL9_9CLOS
Length = 3116
Score = 78.6 bits (192), Expect = 3e-13
Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 13/205 (6%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN V
Sbjct: 2772 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 2831
Query: 396 HHKLTGKVERK-----LITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
H + ++ + +++R P D L +++ ++ S S+ + IN
Sbjct: 2832 LHDIDAFIQPEHCIYGEVSYRCPWDICEWLSEFYPRHVATANVGSVGKSSVSIEEINGCD 2891
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNVYFCRL 76
V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V RL
Sbjct: 2892 DVPYDKAAKYIVYTQAEKNDL--QKHLSRLTVGRTKVVPIVNTVHEVQGETYKRV---RL 2946
Query: 75 TRTSTSLTTGRDPINGPCHGLVALS 1
R T P + H +VAL+
Sbjct: 2947 VRFKYQEDT---PFSSKNHIVVALT 2968
[209][TOP]
>UniRef100_C7EN47 Replicase large subunit n=2 Tax=Cucumber green mottle mosaic virus
RepID=C7EN47_9VIRU
Length = 1648
Score = 78.6 bits (192), Expect = 3e-13
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKVFKFDAVYVDEGLMVHTGLLNFALKISGCKRAFIFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P D T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRDVTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H LVAL+
Sbjct: 1091 IARDSP-----HVLVALT 1103
[210][TOP]
>UniRef100_B2LS13 Replicase large subunit n=2 Tax=Chinese Rape Mosaic Virus
RepID=B2LS13_YOMV
Length = 1596
Score = 78.6 bits (192), Expect = 3e-13
Identities = 64/198 (32%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V L+ C +GDT+QIPF+ R +F +
Sbjct: 876 SFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVANFPYP 935
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + IT R PAD TY L + K V S V RS+ + ++
Sbjct: 936 SHFAKLVVDEKEDRRITLRCPADVTYFLNQ---KYDGAVMCTSSVERSVSAEVVRGKGAL 992
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 993 NPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEI 1048
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1049 ISRASP-----HVLVALT 1061
[211][TOP]
>UniRef100_Q8BEP9 Methyltransferase/helicase polyprotein n=3 Tax=Grapevine rootstock
stem lesion associated virus RepID=Q8BEP9_9CLOS
Length = 2931
Score = 78.2 bits (191), Expect = 4e-13
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 2616 AYLMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNELDKCL 2675
Query: 396 HHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
+ L V+ + +++R P D L + VK S S+ + INS
Sbjct: 2676 YGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINEINSVD 2735
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 76
+ + + YLC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 2736 DLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARVNLVRL 2789
[212][TOP]
>UniRef100_Q911R9 Replicase large subunit n=2 Tax=Tomato mosaic virus
RepID=Q911R9_9VIRU
Length = 1616
Score = 78.2 bits (191), Expect = 4e-13
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 12/204 (5%)
Frame = -3
Query: 576 SYLMS---ASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSF 406
S+LM+ + + +RL DE + H G V ++ C +GDT+QIP+++R F
Sbjct: 887 SFLMNYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVTGF 946
Query: 405 VFRHH--KL-TGKVERKLITWRSPADATYCLEKYF------YKNKRPVKTNSRVLRSIEV 253
+ H KL +VE + T R PADAT+ L + + +++ + V + +
Sbjct: 947 PYPAHFAKLEVDEVETRRTTLRCPADATHFLNQRYEGHVMCTSSEKKSVSQEMVSGAASI 1006
Query: 252 VPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLT 73
P++ P+ E L TQ++K L + +G ++ T HE QG+T+ +V RLT
Sbjct: 1007 NPVSKPLKGE------ILTFTQSDKEALLS----RGYADVHTVHEVQGETYADVSLVRLT 1056
Query: 72 RTSTSLTTGRDPINGPCHGLVALS 1
T S+ G P H LV+LS
Sbjct: 1057 PTPVSIIAGDSP-----HVLVSLS 1075
[213][TOP]
>UniRef100_Q84125 Replicase large subunit n=2 Tax=Odontoglossum ringspot virus
RepID=Q84125_9VIRU
Length = 1596
Score = 78.2 bits (191), Expect = 4e-13
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF- 400
S+LM +L DE + H G V L+ C E + FGDTEQIPF++R +F +
Sbjct: 880 SFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYP 939
Query: 399 RH--HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
+H H + E + ++ R PAD T+ + + + + + TN V+RS++ +
Sbjct: 940 KHFGHTCLHRREVRRLSLRCPADVTHFMNSKY--DGKFLCTND-VIRSVDAEVVRGKGVF 996
Query: 225 ERNTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTST 61
+ L + TQ++KA L + + I T HE QG+TF++V RLT T+
Sbjct: 997 NPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTAL 1056
Query: 60 SLTTGRDPINGPCHGLVALS 1
L + P H LVAL+
Sbjct: 1057 ELISKSSP-----HVLVALT 1071
[214][TOP]
>UniRef100_Q9DJS4 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS4_9CLOS
Length = 366
Score = 77.8 bits (190), Expect = 6e-13
Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L DECF+ HAG + A C V+ FGD+ QI ++ RN
Sbjct: 58 SYLMNHIRLKTDLLFVDECFMVHAGAIGAIVEFTSCKAVVFFGDSRQIHYIHRNDFGVSL 117
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
SF+ H++ G+V ++R P D + K + ++ S S+ +
Sbjct: 118 LHDIDSFIQPEHRVYGEV-----SYRCPWDICEWMSKSYPRHVATANIASVGKSSVSIEI 172
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 173 INGYEDVPYEGDAKYIVYTQAEKNEL--QRHLGRLTVGRTKNVPIVNTVHEVQGETYKRV 230
[215][TOP]
>UniRef100_Q9DJS3 Polyprotein (Fragment) n=1 Tax=Citrus tristeza virus
RepID=Q9DJS3_9CLOS
Length = 370
Score = 77.8 bits (190), Expect = 6e-13
Identities = 64/210 (30%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DE F+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 60 SYLMNHLRLTTQLLFVDEYFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 119
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L +++ ++ S S+ +
Sbjct: 120 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWLSEFYPRHVATANVGSIGKSSVSIEE 174
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V N A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 175 INGCDDVPYNKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 232
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 233 ---RLVRFKYQEDT---PFSSKNHIVVALT 256
[216][TOP]
>UniRef100_Q49IH3 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2
RepID=Q49IH3_9CLOS
Length = 2936
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 2621 AYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNDLDKCL 2680
Query: 396 HHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
+ L V+ + +++R P D L + VK S S+ + INS
Sbjct: 2681 YGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVD 2740
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 76
+ + + YLC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 2741 DLVPDMGSTYLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARVNLVRL 2794
[217][TOP]
>UniRef100_Q2V8A8 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=Q2V8A8_9CLOS
Length = 1317
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 1002 AYLMHHRGCDADILFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNELDKCL 1061
Query: 396 HHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
+ L V+ + +++R P D L + VK S S+ + INS
Sbjct: 1062 YGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVD 1121
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 76
+ + + YLC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 1122 DLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRL 1175
[218][TOP]
>UniRef100_P87587 P346 n=1 Tax=Citrus tristeza virus RepID=P87587_9CLOS
Length = 3107
Score = 77.8 bits (190), Expect = 6e-13
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ +K L D CF+ HAG + A V+ FGD+ QI ++ RN
Sbjct: 2763 SYLMNHIRLKTDLLFVDVCFMVHAGAIGAVVEFTSRKAVVFFGDSRQIHYIHRNDFGVSL 2822
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D L K++ ++ T S S+ +
Sbjct: 2823 LHDIDAFIEPQHRIYGEV-----SYRCPWDICEWLSKFYPRHVATANTGSIGRSSVSIEI 2877
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V +++A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2878 INGCDDVPYDSSAKYIVYTQAEKNEL--QKHLGRLTVAGTKAVPIVNTVHEVQGETYKKV 2935
Query: 90 YFCR 79
R
Sbjct: 2936 RLVR 2939
[219][TOP]
>UniRef100_UPI00001BBB39 polyprotein n=1 Tax=Little cherry virus 2 RepID=UPI00001BBB39
Length = 2150
Score = 77.4 bits (189), Expect = 7e-13
Identities = 68/203 (33%), Positives = 99/203 (48%), Gaps = 15/203 (7%)
Frame = -3
Query: 564 SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL 385
S A K + DECFL HAG + A LAG EV +GD++QIPF++R SF ++ +
Sbjct: 1405 SLRAGKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVV 1464
Query: 384 TG---KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPIN 241
KV ++ +++R P+D L + ++KR VK +SR RS+ I+
Sbjct: 1465 KTDKFKVIKRNVSYRCPSDVCVMLSE--KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAIS 1522
Query: 240 SPVSVERNTNALYLCHTQAEKAVLKAQTH---LKGCDNIFTTHEAQGKTFDNVYFCRLTR 70
S V+ +++ TQ EK + + LK N T HE QGKT V RL
Sbjct: 1523 SITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSN--TVHEIQGKTVPFVKIIRLKA 1580
Query: 69 TSTSLTTGRDPINGPCHGLVALS 1
S+ T + G H +VALS
Sbjct: 1581 AEDSVFT----MTG--HEIVALS 1597
[220][TOP]
>UniRef100_Q991N2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Little cherry virus 2
RepID=Q991N2_9CLOS
Length = 1980
Score = 77.4 bits (189), Expect = 7e-13
Identities = 67/198 (33%), Positives = 97/198 (48%), Gaps = 15/198 (7%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG--- 379
K + DECFL HAG + LAG EV +GD++QIPF++R +FV R+ +
Sbjct: 1298 KCDTVCIDECFLVHAGELKICTALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGF 1357
Query: 378 KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSV 226
KV ++ +++R P+D L + K+KR VK +SR RS+ I+S V
Sbjct: 1358 KVIKRNVSYRCPSDVCVMLSE--KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDV 1415
Query: 225 ERNTNALYLCHTQAEKAVLKAQT---HLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ +++ TQ EK + + LK N T HE QGKT V RL S+
Sbjct: 1416 DMENGDVFVTFTQDEKHAVNNEAKARRLKVSTN--TVHEIQGKTVPFVKIVRLKAADDSV 1473
Query: 54 TTGRDPINGPCHGLVALS 1
T + G H +VALS
Sbjct: 1474 FT----MTG--HEIVALS 1485
[221][TOP]
>UniRef100_Q991N1 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q991N1_9CLOS
Length = 1528
Score = 77.4 bits (189), Expect = 7e-13
Identities = 67/198 (33%), Positives = 97/198 (48%), Gaps = 15/198 (7%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTG--- 379
K + DECFL HAG + LAG EV +GD++QIPF++R +FV R+ +
Sbjct: 1298 KCDTVCIDECFLVHAGELKICTALAGAEEVYLYGDSQQIPFINRLQTFVCRNSVVRTDGF 1357
Query: 378 KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPINSPVSV 226
KV ++ +++R P+D L + K+KR VK +SR RS+ I+S V
Sbjct: 1358 KVIKRNVSYRCPSDVCVMLSE--KKDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDV 1415
Query: 225 ERNTNALYLCHTQAEKAVLKAQT---HLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ +++ TQ EK + + LK N T HE QGKT V RL S+
Sbjct: 1416 DMENGDVFVTFTQDEKHAVNNEAKARRLKVSTN--TVHEIQGKTVPFVKIVRLKAADDSV 1473
Query: 54 TTGRDPINGPCHGLVALS 1
T + G H +VALS
Sbjct: 1474 FT----MTG--HEIVALS 1485
[222][TOP]
>UniRef100_Q7T738 P182 n=1 Tax=Little cherry virus 2 RepID=Q7T738_9CLOS
Length = 1640
Score = 77.4 bits (189), Expect = 7e-13
Identities = 68/203 (33%), Positives = 99/203 (48%), Gaps = 15/203 (7%)
Frame = -3
Query: 564 SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL 385
S A K + DECFL HAG + A LAG EV +GD++QIPF++R SF ++ +
Sbjct: 1405 SLRAGKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVV 1464
Query: 384 TG---KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPIN 241
KV ++ +++R P+D L + ++KR VK +SR RS+ I+
Sbjct: 1465 KTDKFKVIKRNVSYRCPSDVCVMLSE--KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAIS 1522
Query: 240 SPVSVERNTNALYLCHTQAEKAVLKAQTH---LKGCDNIFTTHEAQGKTFDNVYFCRLTR 70
S V+ +++ TQ EK + + LK N T HE QGKT V RL
Sbjct: 1523 SITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSN--TVHEIQGKTVPFVKIIRLKA 1580
Query: 69 TSTSLTTGRDPINGPCHGLVALS 1
S+ T + G H +VALS
Sbjct: 1581 AEDSVFT----MTG--HEIVALS 1597
[223][TOP]
>UniRef100_O10447 Replicase large subunit n=1 Tax=Odontoglossum ringspot virus
RepID=O10447_9VIRU
Length = 1612
Score = 77.4 bits (189), Expect = 7e-13
Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF- 400
S+LM +L DE + H G V L+ C E + FGDTEQIPF++R +F +
Sbjct: 880 SFLMHLKPKTYNKLFIDEGLMLHTGCVNFLIALSHCREAMVFGDTEQIPFINRVANFPYP 939
Query: 399 RH--HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
+H H E + ++ R PAD T+ + K V + V+RS++ +
Sbjct: 940 KHFGHTCLHHREVRRLSLRCPADVTHFMNS---KYDGKVLCTNDVIRSVDAEVVRGKGVF 996
Query: 225 ERNTNAL---YLCHTQAEKAVL--KAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTST 61
+ L + TQ++KA L + + I T HE QG+TF++V RLT T
Sbjct: 997 NPKSKPLKGKIITFTQSDKAELNERGYEEVSTFGEINTVHEIQGETFEDVSVVRLTPTPL 1056
Query: 60 SLTTGRDPINGPCHGLVALS 1
L + P H LVAL+
Sbjct: 1057 ELISKSSP-----HVLVALT 1071
[224][TOP]
>UniRef100_B9VB32 p349 protein n=1 Tax=Citrus tristeza virus RepID=B9VB32_9CLOS
Length = 3116
Score = 77.4 bits (189), Expect = 7e-13
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRN------ 415
SYLM+ + Q L DECF+ HAG + A C V+ FGD++QI ++ RN
Sbjct: 2772 SYLMNHLRLTTQLLFVDECFMVHAGAIGAVVEFTSCKAVVFFGDSKQIHYIHRNDLGVSL 2831
Query: 414 ----PSFVFRHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP 247
+F+ H++ G+V ++R P D +++ ++ S S+ +
Sbjct: 2832 LHDIDAFIQPEHRIYGEV-----SYRCPWDICEWPSEFYPRHVATANVGSIGKSSVSIEE 2886
Query: 246 INSPVSVERNTNALYLCHTQAEKAVLKAQTHL--------KGCDNIFTTHEAQGKTFDNV 91
IN V + A Y+ +TQAEK L Q HL K + T HE QG+T+ V
Sbjct: 2887 INGCDDVPYDKAAKYIVYTQAEKNDL--QKHLGRLTVGRTKVVPIVNTVHEVQGETYKRV 2944
Query: 90 YFCRLTRTSTSLTTGRDPINGPCHGLVALS 1
RL R T P + H +VAL+
Sbjct: 2945 ---RLVRFKYQEDT---PFSSKNHIVVALT 2968
[225][TOP]
>UniRef100_Q8V9A6 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q8V9A6_9VIRU
Length = 1597
Score = 77.0 bits (188), Expect = 1e-12
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V ++ C +GDT+QIPF+ R +F +
Sbjct: 877 SFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVANFPYP 936
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + IT R PAD T+ L K K V S V RS+ + ++
Sbjct: 937 KHFARLVVDEKEDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVRGKGAL 993
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 994 NPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEI 1049
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1050 ISRASP-----HVLVALT 1062
[226][TOP]
>UniRef100_Q8V9A2 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q8V9A2_9VIRU
Length = 1597
Score = 77.0 bits (188), Expect = 1e-12
Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V ++ C +GDT+QIPF+ R +F +
Sbjct: 877 SFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLISQCDIAYVYGDTQQIPFICRVANFPYP 936
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + IT R PAD T+ L K K V S V RS+ + ++
Sbjct: 937 KHFARLVVDEKEDRRITLRCPADVTFFLNK---KYDGSVLCTSSVERSVSAQVVRGKGAL 993
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 994 NPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEI 1049
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1050 ISRASP-----HVLVALT 1062
[227][TOP]
>UniRef100_O71209 Methyltransferase/helicase polyprotein (Fragment) n=1 Tax=Grapevine
leafroll-associated virus 2 RepID=O71209_9CLOS
Length = 2473
Score = 77.0 bits (188), Expect = 1e-12
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 2158 AYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNELDKCL 2217
Query: 396 HHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
+ L V+ + I++R P D L + VK S S+ + INS
Sbjct: 2218 YGDLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVD 2277
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 76
+ + + +LC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 2278 DLVPDVGSTFLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARVNLVRL 2331
[228][TOP]
>UniRef100_B7U5T5 Polyprotein n=1 Tax=Grapevine leafroll-associated virus 2
RepID=B7U5T5_9CLOS
Length = 2936
Score = 77.0 bits (188), Expect = 1e-12
Identities = 55/174 (31%), Positives = 79/174 (45%), Gaps = 7/174 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
+YLM A L DECF+ HAG V A C +V+ FGD+ QI ++ RN
Sbjct: 2621 AYLMHHRGCDADVLFIDECFMVHAGSVLACIEFTRCHKVMIFGDSRQIHYIERNELDKCL 2680
Query: 396 HHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
+ L V+ + I++R P D L + VK S S+ + INS
Sbjct: 2681 YGDLDRFVDLQCRVYGNISYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVD 2740
Query: 231 SVERNTNALYLCHTQAEKAVLKAQTHLKGCD--NIFTTHEAQGKTFDNVYFCRL 76
+ + + +LC Q+EK + KG N+ T HEAQG+T+ V RL
Sbjct: 2741 DLVPDVGSTFLCMLQSEKLEISKHFIRKGLPKLNVLTVHEAQGETYARVNLVRL 2794
[229][TOP]
>UniRef100_Q84687 Orf1 protein n=2 Tax=Peanut clump virus RepID=Q84687_9VIRU
Length = 1145
Score = 76.6 bits (187), Expect = 1e-12
Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 7/184 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+++ + + FDE + HAG++Y + EVI GD++QIPF++R +
Sbjct: 911 SFMLKPLSRRFNSFHFDEALMAHAGMIYICGRMLNAREVICQGDSKQIPFINRVEQISLK 970
Query: 396 HHKLTGKVERKLI--TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP----INSP 235
+ VER+ + T+R P D Y L K Y + S+ S++ S
Sbjct: 971 YSSF-NVVEREHVRKTYRCPLDIVYYLNKKKYYRGDDIVGYSKTTHSVDTKSKSSGFTSL 1029
Query: 234 VSVERNTNALYLCHTQAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
V + + YL QAEK V K +KG + T HEAQGKTF+ V RL T
Sbjct: 1030 VKLPKEP-VHYLTFLQAEKEEVSKHLAGVKGA-TVSTVHEAQGKTFERVNLVRLKMTDNE 1087
Query: 57 LTTG 46
L G
Sbjct: 1088 LYPG 1091
[230][TOP]
>UniRef100_Q91PA8 Replicase large subunit n=2 Tax=Ribgrass mosaic virus
RepID=Q91PA8_RMV
Length = 1597
Score = 76.6 bits (187), Expect = 1e-12
Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V L+ C +GDT+QIPF+ R +F +
Sbjct: 877 SFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVANFPYP 936
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + +T R PAD TY L + V S V RS+ + ++
Sbjct: 937 SHFAKLVVDEKEDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVRGKGAL 993
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 994 NPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEI 1049
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1050 ISRASP-----HVLVALT 1062
[231][TOP]
>UniRef100_Q8JTI3 Helicase (Fragment) n=1 Tax=Little cherry virus 2 RepID=Q8JTI3_9CLOS
Length = 1112
Score = 76.6 bits (187), Expect = 1e-12
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 15/203 (7%)
Frame = -3
Query: 564 SASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKL 385
S A + + DECFL HAG + A LAG EV +GD++QIPF++R SF ++ +
Sbjct: 877 SLRAGRCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVV 936
Query: 384 TG---KVERKLITWRSPADATYCLEKYFYKNKR-------PVK--TNSRVLRSIEVVPIN 241
KV ++ +++R P+D L + ++KR VK +SR RS+ I+
Sbjct: 937 KTDKFKVIKRNVSYRCPSDVCVMLSE--KRDKRGNLCYPAGVKKGNSSRPDRSVSYKAIS 994
Query: 240 SPVSVERNTNALYLCHTQAEKAVLKAQT---HLKGCDNIFTTHEAQGKTFDNVYFCRLTR 70
S V+ +++ TQ EK ++ + LK N T HE QGKT V RL
Sbjct: 995 SVTDVDMENGDVFVTFTQDEKHMVSNEAKARKLKVSSN--TVHEIQGKTVPFVKIVRLKA 1052
Query: 69 TSTSLTTGRDPINGPCHGLVALS 1
S+ T + G H +VALS
Sbjct: 1053 AEDSVFT----MTG--HEIVALS 1069
[232][TOP]
>UniRef100_Q7TD02 Replicase large subunit n=2 Tax=Crucifer tobamovirus
RepID=Q7TD02_9VIRU
Length = 1597
Score = 76.6 bits (187), Expect = 1e-12
Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V L+ C +GDT+QIPF+ R +F +
Sbjct: 877 SFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRVANFPYP 936
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + +T R PAD TY L + V S V RS+ + ++
Sbjct: 937 SHFAKLVVDEKEDRRVTLRCPADVTYFLNTRY---DGSVMCTSSVERSVSAEVVRGKGAL 993
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 994 NPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEI 1049
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1050 ISRASP-----HVLVALT 1062
[233][TOP]
>UniRef100_Q0GK55 Polyprotein 1a n=2 Tax=Strawberry chlorotic fleck associated virus
RepID=Q0GK55_9CLOS
Length = 2787
Score = 76.6 bits (187), Expect = 1e-12
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 7/174 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM VK ++ DECF+ HAG V AA + C + +GD+ QI ++ RN
Sbjct: 2471 SYLMHHINVKGDIMLVDECFMMHAGAVTAAFQFSQCKKAALYGDSRQIHYIQRNDLGCSL 2530
Query: 396 HHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
H + + ++ +++R P D L + + R +S S+ VV INS
Sbjct: 2531 LHDINDFLSDEVRVYGDVSFRCPWDVCEWLSLTYPVHIRSTNEDSVGKSSMRVVCINSVE 2590
Query: 231 SVERNTNALYLCHTQAEKAVLKAQ--THLKGCDNIFTTHEAQGKTFDNVYFCRL 76
V + + +YL +TQ EK ++ + C + T HEAQG T+ V R+
Sbjct: 2591 EVPVDQDHVYLTYTQDEKRDVRKHLLKSVTDCPVVLTVHEAQGATYKYVNLVRV 2644
[234][TOP]
>UniRef100_A8RS49 Polyprotein n=1 Tax=Plum bark necrosis stem pitting-associated virus
RepID=A8RS49_9CLOS
Length = 2343
Score = 76.6 bits (187), Expect = 1e-12
Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 13/166 (7%)
Frame = -3
Query: 537 LIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFV---FRHHKLTGKVER 367
++ DEC+L HAG + A +L S+V +GD QIPF+ R FV H+ K
Sbjct: 2116 MLIDECYLPHAGQLQAIFSLYTPSKVSMYGDRHQIPFIPRTEGFVCTRAEHNIDEDKYSE 2175
Query: 366 KLITWRSPADATY---CLEKYFYK-NKRPVKTNSRVLRSIEVVP-INSPVSVERNTNALY 202
L ++R PAD Y C+ K K V T ++VLRS+ +P P + + NA+
Sbjct: 2176 VLKSYRCPADICYWMNCVAKAPEKVYSGLVTTFNKVLRSVVKIPSAVIPSHLIKEANAI- 2234
Query: 201 LCHTQAEKA-----VLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCR 79
L TQA+K V A+ +K ++ T HEAQGKTF+NV R
Sbjct: 2235 LTFTQADKEMAFKFVAGAKLGMKQKIHVSTIHEAQGKTFENVIIYR 2280
[235][TOP]
>UniRef100_A0ZXL9 Polyprotein (Fragment) n=1 Tax=Fig leaf mottle-associated virus 1
RepID=A0ZXL9_9CLOS
Length = 274
Score = 76.6 bits (187), Expect = 1e-12
Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 15/197 (7%)
Frame = -3
Query: 546 AQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK--- 376
A+ ++ DECFL H GL+ L+G +V +GD +QIPF++R +F + ++ GK
Sbjct: 45 AKVVLIDECFLVHFGLLKVVIALSGAHQVFLYGDRQQIPFINRVQTFKCNNSEIDGKRMQ 104
Query: 375 VERKLITWRSPADATYCLEKYFYKNKR-------PVKTN--SRVLRSIEVVPINSPVSVE 223
+ +K +++R P D C K++R VK +R RSIE+ I S V+
Sbjct: 105 IIKKNVSYRCPGD--ICKRLSEMKDERGNLCYPQGVKKGNPNRPDRSIEMFKITSEADVD 162
Query: 222 RNTNALYLCHTQAEKAVLKAQTHLKGCDN-IFTTHEAQGKTFDNVYFCRL--TRTSTSLT 52
+ + L TQ EK + + + N + T HEAQGK N RL S ++
Sbjct: 163 VRPDDIVLTFTQDEKKKMAEELRKRRLKNMVKTVHEAQGKEAGNFCLVRLKMAEDSVFVS 222
Query: 51 TGRDPINGPCHGLVALS 1
TG H +VA+S
Sbjct: 223 TG--------HNVVAMS 231
[236][TOP]
>UniRef100_Q911R4 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus
RepID=Q911R4_9VIRU
Length = 1670
Score = 76.3 bits (186), Expect = 2e-12
Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF- 400
S++M+ + L DE + H GL+ ++ SEV FGDT+QIPF++R +F +
Sbjct: 940 SFVMNLKPYNFKTLWVDEGLMVHTGLLNFCVNISKVSEVKIFGDTKQIPFINRVMNFDYP 999
Query: 399 --RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
+ VE++ + R P D T+ L + + PV T+S V+ S+ I + V +
Sbjct: 1000 LELKKIIVDNVEKRYTSKRCPRDVTHYLNEVY---AAPVTTSSAVVHSVSQKKI-AGVGL 1055
Query: 225 ER----NTNALYLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDNVYFCRLTRTST 61
R N + TQ++K QT LK G ++ T HE QG+T+++ R T T
Sbjct: 1056 LRPELTNLEGKIITFTQSDK-----QTLLKAGYQDVNTVHEVQGETYESTSVVRATATPI 1110
Query: 60 SLTTGRDPINGPCHGLVALS 1
L + + P H LVALS
Sbjct: 1111 GLISRKSP-----HVLVALS 1125
[237][TOP]
>UniRef100_Q5W5U1 Replicase large subunit n=2 Tax=Zucchini green mottle mosaic virus
RepID=Q5W5U1_9VIRU
Length = 1670
Score = 76.3 bits (186), Expect = 2e-12
Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF- 400
S++M+ + L DE + H GL+ ++ SEV FGDT+QIPF++R +F +
Sbjct: 940 SFVMNLKPYNFKTLWVDEGLMVHTGLLNFCVNISKVSEVKIFGDTKQIPFINRVMNFDYP 999
Query: 399 --RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
+ VE++ + R P D T+ L + + PV T+S V+ S+ I + V +
Sbjct: 1000 LELKKIIVDNVEKRYTSKRCPRDVTHYLNEVY---AAPVTTSSAVVHSVSQKKI-AGVGL 1055
Query: 225 ER----NTNALYLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDNVYFCRLTRTST 61
R N + TQ++K QT LK G ++ T HE QG+T+++ R T T
Sbjct: 1056 LRPELTNLEGKIITFTQSDK-----QTLLKAGYQDVNTVHEVQGETYESTSVVRATATPI 1110
Query: 60 SLTTGRDPINGPCHGLVALS 1
L + + P H LVALS
Sbjct: 1111 GLISRKSP-----HVLVALS 1125
[238][TOP]
>UniRef100_Q82718 Methyltransferase n=2 Tax=Indian peanut clump virus
RepID=Q82718_9VIRU
Length = 1130
Score = 75.9 bits (185), Expect = 2e-12
Identities = 58/169 (34%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Frame = -3
Query: 531 FDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGKVERKLI-- 358
FDE + HAG++Y + EVI GD++QIPF++R R+ VER+ +
Sbjct: 911 FDEALMAHAGMIYICGRMLRAREVICQGDSKQIPFINRVEQITLRYASF-NVVEREYVRK 969
Query: 357 TWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVP----INSPVSVERNTNALYLCHT 190
T+R P D Y L K Y + S+ S++ S V + + YL
Sbjct: 970 TYRCPLDVIYYLNKKRYYQGDDIVGFSKTTHSVDTKSKTSGFTSLVKLPKEP-VHYLTFL 1028
Query: 189 QAEK-AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTG 46
QAEK V K +KG + T HEAQGKTF+ V RL T L G
Sbjct: 1029 QAEKEEVAKHLAGVKGA-TVSTIHEAQGKTFECVNLVRLKMTDNELYPG 1076
[239][TOP]
>UniRef100_Q85077 Alpha-A protein; N-terminal region (Fragment) n=1 Tax=Poa
semilatent virus RepID=Q85077_9VIRU
Length = 478
Score = 75.5 bits (184), Expect = 3e-12
Identities = 58/181 (32%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLTGK-- 376
K Q+ FDE H G + A G +E+I GD Q+P + R + +
Sbjct: 245 KCQKFHFDEALKVHYGAILFCADRLGATEIIAQGDRAQLPMICRVEGIDLHYTRPDFSRI 304
Query: 375 -VERKLITWRSPADATYCLEKYFYKN--KRPVKTNSRVLRSI----EVVP--INSPVSVE 223
+ KL+++R P D + L Y N + + T ++V RS+ E P S + V
Sbjct: 305 VISPKLLSYRIPGDVAFYLSARGYYNGVAQTITTKNKVERSMFARGETTPERFISLLDVP 364
Query: 222 RNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNVYFCRLTRTSTSLTT 49
+ YLC QAEK L A KG ++I T HE+QG TFD+V RL RT +
Sbjct: 365 VRRDVQYLCFMQAEKESLIAYLVPKGVKKESIATIHESQGGTFDHVILVRLQRTPQEIYP 424
Query: 48 G 46
G
Sbjct: 425 G 425
[240][TOP]
>UniRef100_Q8UYT4 1a protein n=1 Tax=Tomato aspermy virus RepID=Q8UYT4_TAV
Length = 993
Score = 75.1 bits (183), Expect = 4e-12
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKV 373
+ QR++ DE L H G + A + I FGD+EQI F SR+ SF RH + +
Sbjct: 776 EVQRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDET 835
Query: 372 ERKLITWRSPAD--------ATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
+ T+RSP D A+ L+K + + S+V RS+ + S V+
Sbjct: 836 DTADTTFRSPQDVIKVVKCMASKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLT 895
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIF------TTHEAQGKTFDNVYFCRLTRTSTSL 55
+ Y+ TQA+K L+ + N F TTHE+QG + D+V RL T L
Sbjct: 896 EDRFYITMTQADKTALRTRARELNMSNDFIEHRIKTTHESQGVSEDHVTLVRLKTTKCDL 955
[241][TOP]
>UniRef100_Q806Y9 Methyltransferase and helicase polyprotein n=1 Tax=Cucumber yellows
virus RepID=Q806Y9_9CLOS
Length = 1887
Score = 75.1 bits (183), Expect = 4e-12
Identities = 55/179 (30%), Positives = 77/179 (43%), Gaps = 13/179 (7%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S LM V L DE F+ H G +A L C + FGD QIP+++R P+ V
Sbjct: 1646 SLLMKGKEVTITNLYCDEIFMVHCGEWFACLNLIKCQSIECFGDKNQIPYINRVPNTVCH 1705
Query: 396 H---HKLTGKVERKLITWRSPADATYCLEKYFYKNKRPV--------KTNSRVLRSIEVV 250
H +T +E I++R P D Y L P+ +N LRS+ V
Sbjct: 1706 HSYSEYMTFPIEYDNISYRCPPDVCYILSSLTDPVGNPLYPGGVYSAGSNCDNLRSLSVE 1765
Query: 249 PINSPVSVERNTNALYLCHTQAEKAVLK--AQTHLKGCDNIFTTHEAQGKTFDNVYFCR 79
P+NSP ++ ++ TQ EK + LK + T +E QG TF V R
Sbjct: 1766 PMNSPDEIKFRDEDKHITFTQPEKEEVSRAISKQLKDSKSANTVNEVQGGTFPTVMLFR 1824
[242][TOP]
>UniRef100_Q65715 Alpha protein n=1 Tax=Barley stripe mosaic virus RepID=Q65715_BSMV
Length = 1138
Score = 75.1 bits (183), Expect = 4e-12
Identities = 64/185 (34%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSR--NPSFVFRHHKLTGK 376
+A R FDE H G + A G SE++ GD Q+P + R F+ T
Sbjct: 904 QADRFHFDEALKVHYGAIMFCADKLGASEILAQGDRAQLPMICRVEGIELQFQSPDYTKT 963
Query: 375 -VERKLITWRSPAD-ATYCLEKYFYKNK---RPVKTNSRVLRSIEVVPINSP-------- 235
+ KL ++R P D A Y K FYK K + V T++ V RS+ +P
Sbjct: 964 IINPKLRSYRIPGDVAFYLSAKEFYKVKGIPQKVTTSNSVKRSLYARGETTPERFVSLLD 1023
Query: 234 VSVERNTNALYLCHTQAEKAVLKAQTHLKGC--DNIFTTHEAQGKTFDNVYFCRLTRTST 61
V V +NT+ YL QAEK L + KG ++I T HEAQG T++NV RL RT
Sbjct: 1024 VPVRKNTH--YLTFLQAEKESLMSHLIPKGVKKESISTIHEAQGGTYENVILVRLQRTPN 1081
Query: 60 SLTTG 46
+ G
Sbjct: 1082 EIYPG 1086
[243][TOP]
>UniRef100_Q50L56 1a protein n=1 Tax=Cassia yellow blotch virus RepID=Q50L56_9BROM
Length = 955
Score = 75.1 bits (183), Expect = 4e-12
Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 16/179 (8%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHKLT-GKVER 367
QRL+ DE L H G V A A + +EV+ FGD+EQI F SR+ +F FRH K+ + +
Sbjct: 742 QRLLIDEAGLLHFGQVLAVAAICKATEVLAFGDSEQISFKSRDNTFRFRHQKIIYDRRDV 801
Query: 366 KLITWRSPADATYCLEKYFYKNKRPVK-------TNSRVLRSIEVVPINSPVSVERNTNA 208
+T+R P D + K + + + + S+V +S+ PI+S + +
Sbjct: 802 VTVTYRCPQDVVAAVVKMKRRTGKLRESKYSSWISRSKVEKSLSARPISSLNQIVIEPHK 861
Query: 207 LYLCHTQAEKAVLKAQTHLKGCD--------NIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
Y TQ+ KA L T K NI T HE+QG + D+V R T L
Sbjct: 862 FYQTMTQSAKAAL--MTRAKDFQLPKSWIEANIKTAHESQGISVDHVVHVRDKSTKCDL 918
[244][TOP]
>UniRef100_A9EEU4 129K replicase protein n=1 Tax=Cucumber green mottle mosaic virus
RepID=A9EEU4_9VIRU
Length = 1144
Score = 75.1 bits (183), Expect = 4e-12
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S++M+ K + DE + H GL+ A ++GC + FGD +QIPF++R +F +
Sbjct: 918 SFVMNRKIFKFDAVYVDEGLMVHTGLLNFALKISGCKKAFVFGDAKQIPFINRVMNFDYP 977
Query: 396 HHKLT---GKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
T VER+ +T R P + T L + K V T S V+ S++ + ++ +
Sbjct: 978 KELRTLIVDNVERRYVTHRCPRELTSFLNTIY---KAAVATTSPVVHSVKAIKVSGAGIL 1034
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
+ + TQ++K L G +++ T HE QG+TF+ R T T L
Sbjct: 1035 RPELTKIKGKIITFTQSDKQSLIK----SGYNDVNTVHEIQGETFEETAVVRATPTPIGL 1090
Query: 54 TTGRDPINGPCHGLVALS 1
P H VAL+
Sbjct: 1091 IARDSP-----HEQVALT 1103
[245][TOP]
>UniRef100_A6XBA0 Replicase large subunit n=2 Tax=Bell pepper mottle tobamovirus
RepID=A6XBA0_9VIRU
Length = 1598
Score = 75.1 bits (183), Expect = 4e-12
Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 6/187 (3%)
Frame = -3
Query: 543 QRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHH--KL-TGKV 373
+RL DE + H G V +++ C +GDT+QIP+++R F + H KL +V
Sbjct: 901 KRLFVDEGLMLHTGCVNFLVSMSLCDVAYIYGDTQQIPYINRVTGFPYPEHFSKLEVDEV 960
Query: 372 ERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVS---VERNTNALY 202
E + T R PAD T+ L + K + V S RS+ + + V +
Sbjct: 961 ETRRTTLRCPADVTFFLNQ---KYEGQVMCTSSEKRSVSQEMVKGAAAINPVSKPMKGKI 1017
Query: 201 LCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSLTTGRDPINGPC 22
L TQ +K L + +G ++ T HE QG+T+ +V RLT T S+ P
Sbjct: 1018 LTFTQFDKDALLS----RGYADVHTVHEVQGETYPDVSLVRLTPTPVSIIARESP----- 1068
Query: 21 HGLVALS 1
H LVALS
Sbjct: 1069 HVLVALS 1075
[246][TOP]
>UniRef100_P28931 Methyltransferase n=1 Tax=Tomato aspermy virus RepID=ORF1A_TAV
Length = 993
Score = 75.1 bits (183), Expect = 4e-12
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 15/180 (8%)
Frame = -3
Query: 549 KAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFRHHK-LTGKV 373
+ QR++ DE L H G + A + I FGD+EQI F SR+ SF RH + +
Sbjct: 776 EVQRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSEQIAFCSRDASFDMRHSTIIPDET 835
Query: 372 ERKLITWRSPAD--------ATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSVERN 217
+ T+RSP D A+ L+K + + S+V RS+ + S V+
Sbjct: 836 DTADTTFRSPQDVIKVVKCMASKALKKGTHSKYASWVSQSKVQRSVSSKAVASVTMVDLT 895
Query: 216 TNALYLCHTQAEKAVLKAQTHLKGCDNIF------TTHEAQGKTFDNVYFCRLTRTSTSL 55
+ Y+ TQA+K L+ + N F TTHE+QG + D+V RL T L
Sbjct: 896 EDRFYITMTQADKTALRTRARELNMSNDFIEHRIKTTHESQGVSEDHVTLVRLKTTKCDL 955
[247][TOP]
>UniRef100_C7B977 ORF 1a/1b fusion protein n=2 Tax=Tomato infectious chlorosis virus
RepID=C7B977_9CLOS
Length = 2394
Score = 74.7 bits (182), Expect = 5e-12
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
Frame = -3
Query: 576 SYLMSA-SAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF 400
S LM+ + ++ + FDE ++ H+G A + + +GD Q+P+++RNP +V
Sbjct: 1647 SLLMNTPNVIELDKAYFDEAYMIHSGQFLVCAAKLKYNNLYCYGDVNQLPYINRNP-YVT 1705
Query: 399 RHHKLTGKVERKL----ITWRSPADATYCLE-------KYFY----KNKRPVKTNSRVLR 265
+H + + +L T+R PAD Y L K Y KN P S+V+R
Sbjct: 1706 DYHSFSIFEDVELNHDDKTFRCPADVCYLLSNLKNDAGKPLYPRGVKNSNP---GSKVIR 1762
Query: 264 SIEVVPINSPVSVERNTNALYLCHTQAEKAVLKAQTHLK---GCDN-IFTTHEAQGKTFD 97
S EV +N +E + YL TQ EK ++ Q H+ GC++ + T HEAQG TF
Sbjct: 1763 SCEVEGVNGVNQIEIQKDVKYLTFTQDEK--IELQHHIARSGGCEHEVNTVHEAQGCTFP 1820
Query: 96 NVYFCRL 76
+V RL
Sbjct: 1821 SVALVRL 1827
[248][TOP]
>UniRef100_A0MBW3 Polyprotein 1a n=1 Tax=Raspberry leaf mottle virus RepID=A0MBW3_9CLOS
Length = 2819
Score = 74.7 bits (182), Expect = 5e-12
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 12/204 (5%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
SYLM + K+ ++ DECF+ HAG V A T G S + +GD+ QI ++ RN +
Sbjct: 2499 SYLMHHAYTKSHVVLIDECFMVHAGAVCAVLTFTGASLAVLYGDSRQIHYIHRNDLGLSL 2558
Query: 396 HHKLTGKVERKL-----ITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPV 232
H + + +++R P D L + + + + S S+ V I+
Sbjct: 2559 LHDINNFLSDDSRVYGNVSYRCPWDVCAWLSEIYPTRIQSMNEKSAGTSSMSVTEISCVE 2618
Query: 231 SVERNTNALYLCHTQAEK-------AVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLT 73
V + Y+ +TQ EK AV ++ K + T HE QG TF +V R
Sbjct: 2619 DVPLDQKFKYITYTQGEKRDLSKHLAVRATASNCKKVPEVNTVHEVQGDTFAHVCLVRFK 2678
Query: 72 RTSTSLTTGRDPINGPCHGLVALS 1
S P + H +VALS
Sbjct: 2679 YQDDS------PFSSQNHIIVALS 2696
[249][TOP]
>UniRef100_Q1L1D7 Replicase large subunit n=2 Tax=Ribgrass mosaic virus
RepID=Q1L1D7_RMV
Length = 1597
Score = 73.9 bits (180), Expect = 8e-12
Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 6/198 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVFR 397
S+LM +RL DE + H G V L+ C +GDT+QIPF+ R +F +
Sbjct: 877 SFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSQCDVAYVYGDTQQIPFICRVANFPYP 936
Query: 396 HH---KLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
H + + E + +T R PAD T+ L + V S V RS+ + ++
Sbjct: 937 SHFAKLVVDEKEDRRVTLRCPADVTHFLNTRY---DGLVTCTSSVERSVSAEVVRGKGAL 993
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLKGCDNIFTTHEAQGKTFDNVYFCRLTRTSTSL 55
T L L TQA+K L KG ++ T HE QG+T++ RLT T +
Sbjct: 994 NPITLPLEGKILTFTQADKFELLD----KGYKDVNTVHEVQGETYEKTAIVRLTATPLEI 1049
Query: 54 TTGRDPINGPCHGLVALS 1
+ P H LVAL+
Sbjct: 1050 ISRTSP-----HVLVALT 1062
[250][TOP]
>UniRef100_Q9IR67 Replicase large subunit n=2 Tax=Kyuri green mottle mosaic virus
RepID=Q9IR67_9VIRU
Length = 1670
Score = 73.6 bits (179), Expect = 1e-11
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 7/199 (3%)
Frame = -3
Query: 576 SYLMSASAVKAQRLIFDECFLQHAGLVYAAATLAGCSEVIGFGDTEQIPFVSRNPSFVF- 400
S++M+ + L DE + H GL+ +A EV FGDT+QIPF++R +F +
Sbjct: 940 SFVMNKKPFTFKTLWVDEGLMVHTGLLNFCVNIAKVKEVKIFGDTKQIPFINRVMNFDYP 999
Query: 399 --RHHKLTGKVERKLITWRSPADATYCLEKYFYKNKRPVKTNSRVLRSIEVVPINSPVSV 226
+ VE++ + R P D T+ L + + PV T+S V+ S+ I +
Sbjct: 1000 LELKKIIVDDVEKRYTSKRCPRDVTHYLNEVY---AAPVTTSSAVVHSVSQKKIAGVGLL 1056
Query: 225 ERNTNAL---YLCHTQAEKAVLKAQTHLK-GCDNIFTTHEAQGKTFDNVYFCRLTRTSTS 58
+L + TQ++K QT LK G +++ T HE QG+T++ R T T
Sbjct: 1057 RPELTSLEGKIITFTQSDK-----QTLLKAGYEDVNTVHEVQGETYECTSVVRATATPIG 1111
Query: 57 LTTGRDPINGPCHGLVALS 1
L + + P H LVALS
Sbjct: 1112 LISRKSP-----HVLVALS 1125