BB914755 ( RCE14353 )

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[1][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SXZ4_SOYBN
          Length = 206

 Score =  298 bits (764), Expect = 2e-79
 Identities = 147/170 (86%), Positives = 159/170 (93%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           MV SEEEI +LYRIRKTVMQML+DRN+LVGDFE+NM+KHEFK KYGE+MKREDLVINK+K
Sbjct: 1   MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
           KD   DQIYVFFP+E KVGVKTMKTYTNRMNSENV+RAILV QT+LTPFARTC+SEI+SK
Sbjct: 61  KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           FHLEVFQEAELLVNIKEH LVPEHQVL D EKKTLLERYTVKETQLPRIQ
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQ 170

[2][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SVA4_SOYBN
          Length = 206

 Score =  295 bits (755), Expect = 2e-78
 Identities = 145/170 (85%), Positives = 158/170 (92%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           MV SEEE+ +LYRIRKTVMQML+DR +LVGDFE+NM+KHEFK KYGE+MKREDLVINK+K
Sbjct: 1   MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
           KD   DQIYVFFP+E KVGVKTMKTYTNRMNSENV+RAILV QT+LTPFARTC+SEI+SK
Sbjct: 61  KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           FHLEVFQEAELLVNIKEH LVPEHQVL D EKKTLLERYTVKETQLPRIQ
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQ 170

[3][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PEL2_VITVI
          Length = 206

 Score =  284 bits (726), Expect = 4e-75
 Identities = 141/170 (82%), Positives = 153/170 (90%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           M  SEEEI++L+RIRKTVMQMLKDR Y VGDFE+NMTKH+F  K+GENMKREDLVINK K
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
           +   SDQIYVFFPEE KVGVKTMKTYTNRM SENVFRAILV Q +LTPFARTC++EI++K
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           FHLEVFQEAELLVNIKEHVLVPEHQVL   EKKTLLERYTVKETQLPRIQ
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQ 170

[4][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
          Length = 206

 Score =  281 bits (720), Expect = 2e-74
 Identities = 139/170 (81%), Positives = 154/170 (90%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           M  +EEEI +L RIRKTVMQMLKDR Y VGDFE+ MT+ +F+ KYG NMKREDLVINKTK
Sbjct: 1   MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
           ++  SDQIYVFFPEEAKVGVKTMKTYTNRM SENVFRAILV Q +LTPFARTC++EI++K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           FHLEVFQEAELLVNIKEHVLVPEHQVL++ EKKTLLERYTVKETQLPRIQ
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQ 170

[5][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9RKM1_RICCO
          Length = 225

 Score =  266 bits (680), Expect = 8e-70
 Identities = 138/189 (73%), Positives = 153/189 (80%), Gaps = 19/189 (10%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           M  SE+EI +L+RIR+TVMQMLKDR YLV D E+N+TKH+F  KYG+NMKREDLVI+K+K
Sbjct: 1   MTLSEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSK 60

Query: 246 KDK-------------------PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
           +D                    P  QIYVFFPEE KVGVKTMKTYTNRM SENVFRAILV
Sbjct: 61  RDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILV 120

Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
            Q SLTPFARTC++EIASKFHLEVFQE+ELLVNIKEHVLVPEHQVL + EKKTLLERYTV
Sbjct: 121 VQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTV 180

Query: 549 KETQLPRIQ 575
           KETQLPRIQ
Sbjct: 181 KETQLPRIQ 189

[6][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
           thaliana RepID=O81098_ARATH
          Length = 205

 Score =  259 bits (662), Expect = 1e-67
 Identities = 127/169 (75%), Positives = 147/169 (86%)
 Frame = +3

Query: 69  VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248
           + +EEE+ +LYRI+KT+MQML+DR Y + D EL MTK +F  K+G+NMKREDLV  K K+
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428
           +  SDQ+Y+FFP+EAKVGVKTMK YTNRM SENVFRAILV Q +LTPFARTC+SEI+SKF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           HLEVFQEAE+LVNIKEHVLVPEHQVL   EKKTLLERYTVKETQLPRIQ
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQ 169

[7][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RKG6_PHYPA
          Length = 208

 Score =  241 bits (616), Expect = 2e-62
 Identities = 116/166 (69%), Positives = 144/166 (86%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           +E+  +LYRIRKTVM+ML+DR+Y+V +FELN TK EF++KYG+  KREDLVI K K+   
Sbjct: 7   DEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNN 66

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
           ++ I+VFFPEEAKVGVKT+KTY +RM +ENV RAILV Q +LTPFAR CVSE++SK+H+E
Sbjct: 67  AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVE 126

Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           VFQEAELLVNIK+HVLVP+H+VLN  EK TLL+RYTVKETQLPR+Q
Sbjct: 127 VFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQRYTVKETQLPRMQ 172

[8][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RWG5_PHYPA
          Length = 208

 Score =  240 bits (613), Expect = 5e-62
 Identities = 116/166 (69%), Positives = 143/166 (86%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           +E+  +LYRIRKTVM+ML+DR+Y+V D+EL ++K +F++KYG+  KREDLVI K ++   
Sbjct: 7   DEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNN 66

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
           ++ I+VFFPEEAKVGVKT+KTY +RM +ENV RAILV Q +LTPFAR CVSE+ASK+HLE
Sbjct: 67  AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLE 126

Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           VFQEAELLVNIKEHVLVP H+VL   EKKTLLERYTVKETQLPR+Q
Sbjct: 127 VFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTVKETQLPRMQ 172

[9][TOP]
>UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=A9NTD1_PICSI
          Length = 191

 Score =  238 bits (608), Expect = 2e-61
 Identities = 116/162 (71%), Positives = 138/162 (85%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           +E+  KL+RIR+TV+QML DR+YLVGDFE+N TK +F DK+GE+ K+EDLVINK K++ P
Sbjct: 4   DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
           S+QI+VFFPEEAKVGVK++KTY  RM SE VFRAILV Q +LTPFAR  V E + KFHLE
Sbjct: 64  SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLE 123

Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563
           VFQEAELLVNIKEHVLVPE Q+L   EKKTLLERYT+KETQ+
Sbjct: 124 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQV 165

[10][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
           guineensis RepID=B3TLL2_ELAGV
          Length = 204

 Score =  235 bits (599), Expect = 2e-60
 Identities = 115/167 (68%), Positives = 140/167 (83%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           SE++I++L+RIR+TVMQML+DR YLV D E+NM K +F +K+GE +KREDLVINK KK+ 
Sbjct: 2   SEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKND 61

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
           P+DQIYVFFP +AKVGVK +K Y  RM +ENV R ILV Q +LTPFAR  ++E++ K+ L
Sbjct: 62  PADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYML 121

Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           EVFQ+ ELLVNIKEHVLVPEHQVL   EKKTLLERYT+KETQLPRIQ
Sbjct: 122 EVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQ 168

[11][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LR68_PICSI
          Length = 194

 Score =  225 bits (574), Expect = 2e-57
 Identities = 113/166 (68%), Positives = 134/166 (80%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           +E+  KL+RIR+TV+QML DR+YLVGDFE+N TK +F DK+GE+ K+EDLVINK K++ P
Sbjct: 4   DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
           S+QI+VFFPEEAKVGVK++KTY  RM SE VFRAILV Q            E + KFHLE
Sbjct: 64  SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQ-----------QEFSGKFHLE 112

Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           VFQEAELLVNIKEHVLVPE Q+L   EKKTLLERYT+KETQLPR+Q
Sbjct: 113 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQLPRMQ 158

[12][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
          Length = 210

 Score =  222 bits (565), Expect = 2e-56
 Identities = 111/170 (65%), Positives = 135/170 (79%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           +V  E  + +L RIR+TVMQML+DR YLV + EL M + +F  KYGE+  REDL+INK K
Sbjct: 5   LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
           K+ PSDQIYVFFP + KVG+K +K Y   M +ENV RA+LV Q +LTPFAR+ + E+  K
Sbjct: 65  KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPK 124

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            HLE+FQEAELL+NIKEHVLVPEHQVLN+ EKKTLLERYT+KETQLPRIQ
Sbjct: 125 IHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQ 174

[13][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9ETS9_ORYSJ
          Length = 210

 Score =  221 bits (564), Expect = 2e-56
 Identities = 111/170 (65%), Positives = 135/170 (79%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           +V  E  + +L RIR+TVMQML+DR YLV + EL M + +F  KYGE+  REDL+INK K
Sbjct: 5   LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
           K+ PSDQIYVFFP + KVG+K +K Y   M +ENV RA+LV Q +LTPFAR+ + E+  K
Sbjct: 65  KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPK 124

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            HLE+FQEAELL+NIKEHVLVPEHQVLN+ EKKTLLERYT+KETQLPRIQ
Sbjct: 125 IHLEIFQEAELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQ 174

[14][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
           RepID=B4FU06_MAIZE
          Length = 210

 Score =  219 bits (557), Expect = 2e-55
 Identities = 108/170 (63%), Positives = 134/170 (78%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           +V  E  + +LYRIR+TVMQML+DR YLV D EL  ++ +F  K+GE+  REDL+INK K
Sbjct: 5   LVTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYK 64

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
           K+ PSDQIYVFFP + KVG+K +K Y   M  ENV RA+LV Q +LTPFA++ + E+  K
Sbjct: 65  KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPK 124

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            HLE+FQEAE+L+NIKEHVLVPEHQVL + EKKTLLERYT+KETQLPRIQ
Sbjct: 125 IHLEIFQEAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQ 174

[15][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FGM1_MAIZE
          Length = 206

 Score =  211 bits (538), Expect = 2e-53
 Identities = 101/170 (59%), Positives = 134/170 (78%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           M   ++EI++L+RIR+TV +ML+DR Y V D ++ + +H+F ++YG  ++R++L  N TK
Sbjct: 1   MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
            + PSDQIYVFFP EAK GVKT++ Y  +M +ENVF  ILV Q +L+ FAR+ V E++ K
Sbjct: 61  LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +HLEVFQEAELLVNIK+HVLVPEH +L   +KKTLLERYTVKETQLPRIQ
Sbjct: 121 YHLEVFQEAELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLPRIQ 170

[16][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q7XUF8_ORYSJ
          Length = 205

 Score =  210 bits (535), Expect = 5e-53
 Identities = 100/167 (59%), Positives = 135/167 (80%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F  ++G+ + R+ LV ++ KKD 
Sbjct: 3   SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
            +DQIYVFFP++AK GVKT+++Y  RM  E+VF  ILV Q +L+ FAR+ V E++ KFHL
Sbjct: 63  GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122

Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           EVFQEAELLVNIK+H LVPEH++L   +KKTLLERYTVKETQLPRIQ
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQLPRIQ 169

[17][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
           RepID=A3AV22_ORYSJ
          Length = 217

 Score =  201 bits (512), Expect = 3e-50
 Identities = 95/163 (58%), Positives = 131/163 (80%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F  ++G+ + R+ LV ++ KKD 
Sbjct: 3   SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
            +DQIYVFFP++AK GVKT+++Y  RM  E+VF  ILV Q +L+ FAR+ V E++ KFHL
Sbjct: 63  GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122

Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563
           EVFQEAELLVNIK+H LVPEH++L   +KKTLLERYTVKETQ+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQI 165

[18][TOP]
>UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa
           Japonica Group RepID=B7EQI7_ORYSJ
          Length = 167

 Score =  201 bits (511), Expect = 3e-50
 Identities = 95/163 (58%), Positives = 131/163 (80%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F  ++G+ + R+ LV ++ KKD 
Sbjct: 3   SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
            +DQIYVFFP++AK GVKT+++Y  RM  E+VF  ILV Q +L+ FAR+ V E++ KFHL
Sbjct: 63  GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122

Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563
           EVFQEAELLVNIK+H LVPEH++L   +KKTLLERYTVKETQ+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQV 165

[19][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MXV4_9CHLO
          Length = 206

 Score =  195 bits (495), Expect = 2e-48
 Identities = 100/168 (59%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           S E++TKL+RI KTV +ML  R YLV   EL   K  F++ YG++ KRE L +   ++D 
Sbjct: 3   SSEKVTKLFRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDD 62

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK-FH 431
           PS+ I+VFFPEE KVGVKT+K Y  RM  E+VFRAI+V Q SLTPFA+  + E AS+ F+
Sbjct: 63  PSENIFVFFPEEEKVGVKTIKEYAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFY 122

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E FQE ELLVNI EHVLVPEH +L+D EK+TLL RY VK+TQLPRIQ
Sbjct: 123 IEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLARYKVKDTQLPRIQ 170

[20][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
           Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
          Length = 206

 Score =  193 bits (490), Expect = 9e-48
 Identities = 89/165 (53%), Positives = 126/165 (76%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260
           + +T+L+R+R+T +QML DR YLV   E+  TK +F+D++GEN +++DL I   ++D P+
Sbjct: 2   DNLTRLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPT 61

Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           +QI+VFFPEE KVGVKT+K    RM  E V RAI+V  +  TPFA++ + ++  K+H+E 
Sbjct: 62  EQIFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEH 121

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           F E+ELLVNI EHVLVPEH++L+  EK+TLL+RY +KETQLPRIQ
Sbjct: 122 FLESELLVNITEHVLVPEHRILSPDEKRTLLDRYKIKETQLPRIQ 166

[21][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RWP8_OSTLU
          Length = 205

 Score =  182 bits (461), Expect = 2e-44
 Identities = 94/168 (55%), Positives = 120/168 (71%), Gaps = 1/168 (0%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           S ++ T+L+R+RKT+ +ML  R YLV   EL      F + +GE  KRE L I   K+D 
Sbjct: 2   SNDKRTRLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDD 61

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFH 431
           PS+ I+VFFP+E KVGVKT+K    RM  ENVFRAI+V Q SLTPFA+  + E    KF+
Sbjct: 62  PSENIFVFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKFY 121

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E FQE ELLVNI +HVLVPEH +L+D +K+TLL+RY VK+TQLPRIQ
Sbjct: 122 IEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLDRYKVKDTQLPRIQ 169

[22][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
            Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
          Length = 1124

 Score =  181 bits (460), Expect = 3e-44
 Identities = 93/168 (55%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
 Frame = +3

Query: 75   SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
            S +   +L+R+RKT+ +ML  R YLV   EL      F +++GE  KR+ L I   +KD 
Sbjct: 921  SSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKDD 980

Query: 255  PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFH 431
            PS+ I+VFFP+E KVGVKT+K    RM  ENVFRAI+V Q SLTPFA+  + E    KF+
Sbjct: 981  PSENIFVFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKFY 1040

Query: 432  LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            +E FQE ELLVNI +HVLVPEH +L+D +K+TLLERY VK+TQLPRIQ
Sbjct: 1041 IEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLERYKVKDTQLPRIQ 1088

[23][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
          Length = 204

 Score =  180 bits (457), Expect = 6e-44
 Identities = 93/166 (56%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260
           E+ T+L+RIRKTV +ML  R YLV   EL+  K  F +++GE+ +R+ L +    ++ P+
Sbjct: 3   EKKTRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPT 62

Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFHLE 437
             I+VFFP+E KVGVKT+K Y  RM  E V RAI+V Q SLTPFAR  + E  A KF++E
Sbjct: 63  QHIFVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIE 122

Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            FQEAELLVNI +HVLVPEH +L+D +K+ LL+RY VKETQLPRIQ
Sbjct: 123 QFQEAELLVNITDHVLVPEHILLSDEQKRVLLDRYKVKETQLPRIQ 168

[24][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
           intestinalis RepID=UPI000180C3C9
          Length = 210

 Score =  172 bits (436), Expect = 2e-41
 Identities = 91/171 (53%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  +L+RIRKTVMQ+  DR YLV   EL+ +  EFK+++G+        R+DL I   
Sbjct: 4   EAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVGVKT+KTY  RM  EN+ RAI+V Q S+TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQEENIQRAIIVVQQSMTPSAKQSLFDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E ELL+NI EH LVPEH VL   EK  LL RY +K+ QLPRIQ
Sbjct: 124 KYILEQFLEQELLINITEHELVPEHVVLTPEEKSELLTRYKLKDHQLPRIQ 174

[25][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186E78B
          Length = 210

 Score =  171 bits (434), Expect = 3e-41
 Identities = 86/171 (50%), Positives = 118/171 (69%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKTVMQ+  DR YLV   EL+ T  +FK+++G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP++ K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  +S++A 
Sbjct: 64  HNDDPTDQMFVFFPDDPKIGIKTIKTYCQRMQEENIHRAIIVVQQGMTPSAKQSLSDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   EK+ LL+RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLQRYKLKENQLMRIQ 174

[26][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
           vitripennis RepID=UPI00015B5456
          Length = 210

 Score =  168 bits (426), Expect = 2e-40
 Identities = 86/171 (50%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKTVMQ+  DR YLV   EL+ T  +FK+++G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP+E K+G+KT+KTY  RM  E + RAI+V Q+ +TP A+  + ++A 
Sbjct: 64  HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH VL   EK+ LL RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174

[27][TOP]
>UniRef100_UPI000051A7F2 PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
           RepID=UPI000051A7F2
          Length = 179

 Score =  167 bits (424), Expect = 4e-40
 Identities = 86/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKTVMQ+  DR YLV   EL+ T  +FK+++G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP+E K+G+KT+KTY  RM  E + RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH VL   EK+ LL RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174

[28][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
           RepID=UPI00003C0CAC
          Length = 210

 Score =  167 bits (424), Expect = 4e-40
 Identities = 86/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKTVMQ+  DR YLV   EL+ T  +FK+++G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP+E K+G+KT+KTY  RM  E + RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH VL   EK+ LL RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174

[29][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
          Length = 210

 Score =  167 bits (423), Expect = 5e-40
 Identities = 86/171 (50%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKT+MQ+  DR YLV   EL+ T  +FKD +G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   EK+ LL RY +KE  L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQ 174

[30][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
           RepID=A6N9W6_ORNPR
          Length = 210

 Score =  167 bits (423), Expect = 5e-40
 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKT+MQ+  DR YLV   EL+ T  +FK ++G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP+E K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  ++++A 
Sbjct: 64  HNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALTDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH VL   EK  LL RY +KE  L RIQ
Sbjct: 124 KYILEYFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMRIQ 174

[31][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
           RepID=C3ZQF0_BRAFL
          Length = 210

 Score =  166 bits (420), Expect = 1e-39
 Identities = 85/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E+E  KL+RIRKT+MQ+  DR YLV   EL+    +FKD++G+        R+DLV+   
Sbjct: 4   EQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFF +E K+G+KT+K Y  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFADEPKIGIKTIKMYCQRMQEENISRAIIVVQMGMTPSAKQALVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   EK  LL RY +KE QLPRIQ
Sbjct: 124 KYILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRLKEHQLPRIQ 174

[32][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
          Length = 210

 Score =  166 bits (420), Expect = 1e-39
 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKT+MQ+  DR YLV   EL+ T  +FK+ +G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   EK+ LL RY +KE  L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSRYKLKENMLMRIQ 174

[33][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
          Length = 210

 Score =  166 bits (419), Expect = 2e-39
 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKT+MQ+  DR YLV   EL+ T  +FK+ +G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   EK+ LL RY +KE  L RIQ
Sbjct: 124 KYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSRYKLKENMLMRIQ 174

[34][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
          Length = 210

 Score =  166 bits (419), Expect = 2e-39
 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKT+MQ+  DR YLV   EL+ T  +FK+ +G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   EK+ LL RY +KE  L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQ 174

[35][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
           RepID=B0X7A5_CULQU
          Length = 210

 Score =  166 bits (419), Expect = 2e-39
 Identities = 84/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           + E  KL+RIRKTVMQ+  DR YLV   EL+ T  +FK+++G+        R DL++   
Sbjct: 4   DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP+E K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   EK+ LL RY +KE  L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQ 174

[36][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
           RepID=UPI0000587A08
          Length = 210

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  +L+R+R+T+MQ+  DR YLV   EL+ T  +FK+++G+        R+DL +   
Sbjct: 4   EAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RAI+  Q  +TP A+T + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F EAELL+NI EH  VPEH V+   EK  LL RY +K+ QLPRIQ
Sbjct: 124 KYILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKLKDHQLPRIQ 174

[37][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
           mordax RepID=C1BIS3_OSMMO
          Length = 210

 Score =  165 bits (418), Expect = 2e-39
 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLTRYKLKESQLPRIQ 174

[38][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
           RepID=Q5DDM1_SCHJA
          Length = 206

 Score =  165 bits (418), Expect = 2e-39
 Identities = 83/170 (48%), Positives = 117/170 (68%), Gaps = 1/170 (0%)
 Frame = +3

Query: 69  VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248
           +  + E  KL+RIRKT+++M KDR YLV   EL  +  +FK   G+   R+DL++    +
Sbjct: 1   MLDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHE 60

Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ-TSLTPFARTCVSEIASK 425
           + P+D +YVFFPEE KV +KT++ Y N+M  ++ +RAILV Q   LTP A+T ++E++ K
Sbjct: 61  EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCK 120

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           + LE F E EL+VNI EH LVP+H VL   EKK LLERY +KE QLP++Q
Sbjct: 121 YTLECFFENELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQ 170

[39][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
          Length = 210

 Score =  165 bits (418), Expect = 2e-39
 Identities = 87/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKTVMQ+  DR YLV   EL+ T  +FK+++G+        R DL++   
Sbjct: 4   ECESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE K+G+KT+KTY  RM  E + RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCQRMQEETITRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH VL   EK+ LL RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKQELLCRYKLKENQLMRIQ 174

[40][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
           Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
          Length = 210

 Score =  165 bits (417), Expect = 3e-39
 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQ 174

[41][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
          Length = 210

 Score =  165 bits (417), Expect = 3e-39
 Identities = 85/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V++  E   LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMSKEEVVELLARYKLKESQLPRIQ 174

[42][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
           Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
          Length = 208

 Score =  165 bits (417), Expect = 3e-39
 Identities = 83/167 (49%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           + E  KL+RIRKT+++M KDR YLV   EL  +  +FK   G+   R+DL++    ++ P
Sbjct: 6   DSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDP 65

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ-TSLTPFARTCVSEIASKFHL 434
           +D +YVFFPEE KV +KT++ Y N+M  ++ +RAILV Q   LTP A+T ++E++ K+ L
Sbjct: 66  ADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTL 125

Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           E F E EL+VNI EH LVP+H VL   EKK LLERY +KE QLP++Q
Sbjct: 126 ECFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQ 172

[43][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
          Length = 210

 Score =  165 bits (417), Expect = 3e-39
 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKT+MQ+  DR YLV   EL+ T  +FK+ +G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   +K+ LL RY +KE  L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQ 174

[44][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
          Length = 210

 Score =  165 bits (417), Expect = 3e-39
 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKT+MQ+  DR YLV   EL+ T  +FK+ +G+        R DL++   
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   +K+ LL RY +KE  L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQ 174

[45][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
          Length = 211

 Score =  165 bits (417), Expect = 3e-39
 Identities = 86/175 (49%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230
           M   E E  +L+RIRKTV+QM+ DR YLV   EL+     FK +YG+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60

Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
           I     D P+DQ++VFFPE+AK+G+KT+K    +M  +N+ RAI+V QT +TP A+  + 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           ++A K+ LE F EAEL+VNI EH LVPEH V+   EK  LL RY +K++QLPRIQ
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQ 175

[46][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
           rerio RepID=Q6DEG5_DANRE
          Length = 210

 Score =  164 bits (415), Expect = 4e-39
 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EF+ ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQ 174

[47][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
          Length = 210

 Score =  163 bits (413), Expect = 8e-39
 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQ 174

[48][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
           Tax=Murinae RepID=RPAB1_MOUSE
          Length = 210

 Score =  163 bits (413), Expect = 8e-39
 Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E+QLPRIQ
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQ 174

[49][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
           isoform 1 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A3E0E
          Length = 208

 Score =  163 bits (412), Expect = 1e-38
 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

[50][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
           RepID=UPI000056951D
          Length = 211

 Score =  163 bits (412), Expect = 1e-38
 Identities = 87/172 (50%), Positives = 115/172 (66%), Gaps = 6/172 (3%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKTVMQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFP-EEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA 419
             D P+DQ++VFFP EE KVG+KT+K Y  RM  EN+ RA++V QT +TP A+  + ++A
Sbjct: 64  HNDDPTDQMFVFFPVEELKVGIKTIKMYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMA 123

Query: 420 SKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            K+ LE F + ELL+NI EH LVPEH V+   E   LL RY +KETQLPRIQ
Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKETQLPRIQ 175

[51][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
           polymerases I, II, and III subunit ABC1) (DNA-directed
           RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
           polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
           lupus familiaris RepID=UPI0000EB19D6
          Length = 212

 Score =  163 bits (412), Expect = 1e-38
 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

[52][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Esox lucius RepID=C1BZT4_ESOLU
          Length = 210

 Score =  163 bits (412), Expect = 1e-38
 Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA +V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174

[53][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
           RepID=A8XGH1_CAEBR
          Length = 211

 Score =  163 bits (412), Expect = 1e-38
 Identities = 84/175 (48%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230
           M   E E  +L+RIRKTV+QM+ DR YLV   EL+     FK+ +G+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60

Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
           I     D P+DQ++VFFPE+ K+G+KT+K    +M  +N+ RAI+V QT +TP A+  + 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           ++A K+ LE F EAEL+VNI EH LVPEH V+   EK  LL RY +K++QLPRIQ
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQ 175

[54][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D56A05
          Length = 210

 Score =  162 bits (411), Expect = 1e-38
 Identities = 85/171 (49%), Positives = 112/171 (65%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+RIRKTVMQ+  DR YLV   EL+ T  +FK++ G+        R DL I   
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP+E K+G+K +KTY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+NI EH LVPEH V+   EK+ LL RY +KE  L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTRYKLKENMLMRIQ 174

[55][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
           Tax=Neognathae RepID=B5FX59_TAEGU
          Length = 210

 Score =  162 bits (411), Expect = 1e-38
 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

[56][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
           RepID=Q28HF5_XENTR
          Length = 210

 Score =  162 bits (411), Expect = 1e-38
 Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQ 174

[57][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Salmo salar RepID=B5X8S7_SALSA
          Length = 210

 Score =  162 bits (411), Expect = 1e-38
 Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA +V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174

[58][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
           pseudonana CCMP1335 RepID=B8C1Q1_THAPS
          Length = 226

 Score =  162 bits (410), Expect = 2e-38
 Identities = 84/164 (51%), Positives = 111/164 (67%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E ++L+R+ KTV  ML  R Y+V      MT  +F  ++GE   RE L I   K D  ++
Sbjct: 27  EASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETN 86

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           Q++VFFPE+ KVGVK +K  T+RM  ENV  AILV +  +TPFA+  V E++  F LE F
Sbjct: 87  QLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHF 146

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +EAELLV+I EH LVPEH VL+  EK+ LL+RY ++ETQLPRIQ
Sbjct: 147 KEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQLPRIQ 190

[59][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
           n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
          Length = 278

 Score =  162 bits (409), Expect = 2e-38
 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EE+  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

[60][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
           RepID=C6K8L9_CAEBE
          Length = 211

 Score =  162 bits (409), Expect = 2e-38
 Identities = 83/175 (47%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230
           M   E E  +L+RIRKTV+QM+ DR YLV   EL+     FK+ +G+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLT 60

Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
           I     D P+DQ++VFFP++ K+G+KT+K    +M  +N+ RAI+V QT +TP A+  + 
Sbjct: 61  ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           ++A K+ LE F EAEL+VNI EH LVPEH V+   EK  LL RY +K++QLPRIQ
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQ 175

[61][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Pongo abelii RepID=RPAB1_PONAB
          Length = 210

 Score =  162 bits (409), Expect = 2e-38
 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EF+ ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

[62][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
           Tax=Euteleostei RepID=B5X957_SALSA
          Length = 210

 Score =  161 bits (408), Expect = 3e-38
 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           +EE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA +V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174

[63][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caligus clemensi RepID=C1C1G9_9MAXI
          Length = 210

 Score =  161 bits (407), Expect = 4e-38
 Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+++RKTVM +  DR YLV   EL+ T+ +FK ++G+        R DL I   
Sbjct: 4   ESETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPE+ K+GVK ++TY  RM  EN+ RAI+V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEDPKIGVKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+N+ EH LVPEH V+   EKK LL++Y +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQ 174

[64][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Homo sapiens RepID=RPAB1_HUMAN
          Length = 210

 Score =  161 bits (407), Expect = 4e-38
 Identities = 83/171 (48%), Positives = 112/171 (65%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK + G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

[65][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Bos taurus RepID=RPAB1_BOVIN
          Length = 210

 Score =  159 bits (401), Expect = 2e-37
 Identities = 82/171 (47%), Positives = 111/171 (64%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV    L+ T  EFK ++G        +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F + ELL+NI EH LVPEH V+   E   LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174

[66][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
          Length = 213

 Score =  157 bits (397), Expect = 5e-37
 Identities = 83/166 (50%), Positives = 113/166 (68%), Gaps = 5/166 (3%)
 Frame = +3

Query: 93  KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRE----DLVINKTKKDKPS 260
           +L+R+RKT+ ++L+DR YLV    LN TK  F  ++ E  +R+    DL+I  +K+D PS
Sbjct: 12  RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71

Query: 261 DQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
           DQ+ VFFP+E K VGVK ++T   +M  + + RAILV Q  LT FA+T + E + +  +E
Sbjct: 72  DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131

Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           VF E+EL+VNI  H LVPEH+ L   EK+ LLERY VKE QLPRIQ
Sbjct: 132 VFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLPRIQ 177

[67][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
          Length = 213

 Score =  157 bits (396), Expect = 7e-37
 Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRE----DLVINKTK 245
           ++   +L+R+RKT+ ++L+DR Y+V    LN TK  F  ++ E  +R+    DL+I  +K
Sbjct: 7   DDTTIRLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSK 66

Query: 246 KDKPSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
           +D PSDQ+ VFFP+E K VGVK ++T   +M  + + RAILV Q  LT FA+T + E + 
Sbjct: 67  QDDPSDQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASP 126

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +  +EVF E+EL+VNI  H LVPEH+ L   EK+ LLERY VKE QLPRIQ
Sbjct: 127 QMEIEVFNESELVVNITHHELVPEHKPLTPEEKRLLLERYKVKENQLPRIQ 177

[68][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
          Length = 210

 Score =  156 bits (395), Expect = 9e-37
 Identities = 79/171 (46%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E  KL+++RKTVM +  DR YLV   EL+ T  +FK ++G+        R DL I   
Sbjct: 4   EAENYKLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP++ K+G+K ++TY  RM  EN+ RAI++ Q+ +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPDDPKIGIKHIRTYCKRMQEENITRAIILVQSGMTPSAKQSLMDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+ELL+N+ EH LVPEH V+   EKK LL++Y +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQ 174

[69][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
           RepID=B7FSY0_PHATR
          Length = 228

 Score =  156 bits (394), Expect = 1e-36
 Identities = 75/164 (45%), Positives = 112/164 (68%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+R+ +T+  ML  R Y+V      +T   FK+++GE   RE+L I   K D  ++
Sbjct: 29  EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           Q+++FFPE+ KVGVK +K YT+RM +E+V  AI++ +  +TPFA+  V E++  F +E F
Sbjct: 89  QLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHF 148

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E+ELLV+I +H LVP HQVL   EK  LL+RY +K++QLPRIQ
Sbjct: 149 KESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQ 192

[70][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5E0K0_DROPS
          Length = 210

 Score =  155 bits (393), Expect = 2e-36
 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           EEE+ K++RIRKTV+QM  DR YLV   EL+ T   F++ +G+        R D+ +   
Sbjct: 4   EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFP+E KVG+K +K Y  RM  E+++RAI+V Q S+TP AR  + E+A 
Sbjct: 64  HNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F EAEL+ NI E+  VPEH V+   EK+ LL RY +KE+ L RIQ
Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLKESMLMRIQ 174

[71][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
          Length = 210

 Score =  155 bits (393), Expect = 2e-36
 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           EEE+ K++RIRKTV+QM  DR YLV   EL+ T   F++ +G+        R D+ +   
Sbjct: 4   EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+K +K Y  RM  E+++RAI+V Q S+TP AR  + E+A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F EAEL+ NI E+  VPEH V+   EK+ LL RY ++E+ L RIQ
Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLRESMLMRIQ 174

[72][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
           RepID=B3S3Q9_TRIAD
          Length = 210

 Score =  155 bits (391), Expect = 3e-36
 Identities = 80/171 (46%), Positives = 111/171 (64%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK--- 248
           EEE  KL+RIRKTVMQM  DR Y+V   EL+ T  +F +++   M     V         
Sbjct: 4   EEEAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVH 63

Query: 249 --DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P++Q++VFFP+E KVG+ T+K Y  RM  EN+ RAI++ Q+ +TP A+  + ++A 
Sbjct: 64  HIDDPTEQLFVFFPDEPKVGINTIKKYCQRMQRENINRAIIIIQSGMTPTAKQSLIDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           K+ LE F E+EL++NI EH LVP+H V++  EK  LL RY +KE QLPRIQ
Sbjct: 124 KYTLESFMESELMINITEHHLVPKHIVMSPEEKAELLARYKLKEHQLPRIQ 174

[73][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
           polypeptide E, 25kDa n=1 Tax=Pan troglodytes
           RepID=UPI0000E24E5A
          Length = 230

 Score =  153 bits (386), Expect = 1e-35
 Identities = 78/161 (48%), Positives = 105/161 (65%), Gaps = 5/161 (3%)
 Frame = +3

Query: 108 RKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKKDKPSDQIY 272
           RKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +     D P+DQ++
Sbjct: 34  RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 93

Query: 273 VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEA 452
           VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A K+ LE F + 
Sbjct: 94  VFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQ 153

Query: 453 ELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           ELL+NI EH LVPEH V+   E   LL RY ++E QLPRIQ
Sbjct: 154 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 194

[74][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
          Length = 207

 Score =  150 bits (379), Expect = 7e-35
 Identities = 81/166 (48%), Positives = 110/166 (66%), Gaps = 5/166 (3%)
 Frame = +3

Query: 93  KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKTKKDKP 257
           K +RIRKTVMQ+    N L+   EL+ T  +FK+++G+        R DL I     D P
Sbjct: 9   KFWRIRKTVMQVC---NGLILRDELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDP 65

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
           +DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A K+ LE
Sbjct: 66  TDQMFVFFPEEPKVGIKTIKQYCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILE 125

Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            F EAEL++NI EH LVPEH ++   EK+ LL RY +KE QLPRIQ
Sbjct: 126 QFVEAELMINITEHELVPEHVLMTPDEKQELLLRYKLKEHQLPRIQ 171

[75][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8NU15_COPC7
          Length = 273

 Score =  148 bits (373), Expect = 3e-34
 Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKTKKD 251
           +E  +L+++ KT+ +++KDR + V D E+NM+   F+  YG NM    R  L      + 
Sbjct: 70  DETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRL 129

Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
            PSDQI+V+F EE  VGVK M+     M  + + R I++   ++T  AR  +S +AS + 
Sbjct: 130 NPSDQIFVYFTEEPNVGVKAMRKLLGIMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 189

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           LE F EA+LLVNI  H LVP H+VL+  EKKTLLERY +K+TQLPRIQ
Sbjct: 190 LEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLERYRLKDTQLPRIQ 237

[76][TOP]
>UniRef100_UPI00005A3E0F PREDICTED: similar to DNA-directed RNA polymerase II 23 kDa
           polypeptide (RPB25) (RPB5) (RPABC1) isoform 2 n=1
           Tax=Canis lupus familiaris RepID=UPI00005A3E0F
          Length = 162

 Score =  146 bits (368), Expect = 1e-33
 Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
           K+ LE F + ELL+NI EH LVPEH V+   E   LL R
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162

[77][TOP]
>UniRef100_Q8R0H0 Polr2e protein n=1 Tax=Mus musculus RepID=Q8R0H0_MOUSE
          Length = 162

 Score =  146 bits (368), Expect = 1e-33
 Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
           K+ LE F + ELL+NI EH LVPEH V+   E   LL R
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162

[78][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
           RepID=B0D9Y7_LACBS
          Length = 208

 Score =  146 bits (368), Expect = 1e-33
 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN---MKREDLVINKTKKD 251
           +E  KL+++ +T+ +++KDR +LV D E++M    F+  Y  N   + R  L    T + 
Sbjct: 5   DETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRT 64

Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
             +DQI+VFF EE  VGVKTM+     +  +++ R I+V   ++TP AR  +  +A ++ 
Sbjct: 65  NSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYR 124

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           LE F EA+LLVNI  H LVP H VL+  EKKTLLE+Y +KETQLPRIQ
Sbjct: 125 LEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEKYRLKETQLPRIQ 172

[79][TOP]
>UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1
           Tax=Dictyostelium discoideum RepID=RPAB1_DICDI
          Length = 197

 Score =  144 bits (364), Expect = 4e-33
 Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260
           E+I +L +IRKTV+QML DR Y++  +E    +  F       + RE+L +   KKD P+
Sbjct: 2   EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPT 54

Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA--SKFHL 434
           D IYVFFP+  KVGV  +K Y + M      RAI+V Q ++TPFA+  ++E +   K  L
Sbjct: 55  DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITL 114

Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           E F EAELLVNI  H LVP+H +L   EK  LL RY +KE+QLPRIQ
Sbjct: 115 EQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQ 161

[80][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
           Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
          Length = 210

 Score =  141 bits (356), Expect = 3e-32
 Identities = 73/169 (43%), Positives = 112/169 (66%), Gaps = 4/169 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKR---EDLVINKTKK 248
           ++EIT+++++R+TV+QML+DR Y + + +LN+ + EF  ++ + M +   E L ++  K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTN-RMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
             P+D+IYVF+PE  KVGV  +K     +M  + V R I+V   ++T  AR  VSE+   
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
             +EVF+EAEL+ NI EH LV ++ VL+D  KK LL  YTV++TQLPRI
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRI 173

[81][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5DLP1_DROPS
          Length = 320

 Score =  138 bits (347), Expect = 3e-31
 Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 5/170 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E E+ KL+ IRKT+ +M  DR YLV   EL+ T  +F + +G+        R DL +  +
Sbjct: 4   EAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTMLLS 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P +++ VFFPEE KV VKT+K Y +RM  E + RAILV +  LTP A+  +  +A 
Sbjct: 64  HADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEGEGIHRAILVVRDCLTPPAKQSIMAMAP 123

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
            + +E F E+EL +N+ +H LVP+H VL++ EKK L   Y +KE+Q+ R+
Sbjct: 124 LYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRCYRLKESQMMRM 173

[82][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
           putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
          Length = 205

 Score =  135 bits (340), Expect = 2e-30
 Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-MKREDLVINKTKKDK 254
           E+   +L+R RKT   ML+DR Y+V   E N + ++F  ++ EN   R  +++  + K  
Sbjct: 2   EDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVD 61

Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
           P +++ V+F +E K  GVK ++  T RM   N+ RAILV Q  LT FAR  +SE A +  
Sbjct: 62  PDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHI 121

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E F E+ELLVNI +H LVP+H  L + EK+ LL RY VKE QLPRIQ
Sbjct: 122 IENFMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQ 169

[83][TOP]
>UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SWJ6_PHYPA
          Length = 211

 Score =  134 bits (337), Expect = 5e-30
 Identities = 72/159 (45%), Positives = 103/159 (64%), Gaps = 3/159 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           + + T LY++RK V++M++D +Y+V D EL +T  +F +KY E+ K+EDL+I K K    
Sbjct: 7   DRQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNN 66

Query: 258 SDQIYVFFPE---EAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428
           ++      P+   + +VG+KT+KT   RM  ENV RA+ V Q  +TP ++  +S  A K+
Sbjct: 67  AEH----GPKTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQHITPLSKQYISRKAQKY 122

Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
           HLEVF E E LVNI E  LVP H++L   EK TLLERYT
Sbjct: 123 HLEVFLEPEFLVNITECYLVPLHEILTPEEKNTLLERYT 161

[84][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
           strain H RepID=B3L6X3_PLAKH
          Length = 205

 Score =  134 bits (336), Expect = 6e-30
 Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
           E+ IT+ Y+ RKT  +ML+DR Y++   E       FK+++ EN K R  + I  + K+ 
Sbjct: 2   EDPITRFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61

Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
            S++I V+F +E K  GVK ++  T +M+ +++ RAILV Q +LTPFAR  + E A +  
Sbjct: 62  ESNKIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E F + ELLVNI +H LVP H  L   EK+ LL+RY +KE +LPRIQ
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQ 169

[85][TOP]
>UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative
           (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5LN15_9ALVE
          Length = 168

 Score =  132 bits (333), Expect = 1e-29
 Identities = 72/142 (50%), Positives = 95/142 (66%), Gaps = 5/142 (3%)
 Frame = +3

Query: 165 LNMTKHEFKDKYGENMKRE----DLVINKTKKDKPSDQIYVFFPEEAK-VGVKTMKTYTN 329
           LN TK  F  ++ E  +R+    DL+I  +K+D PSDQ+ VFFP+E K VGVK ++T   
Sbjct: 2   LNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLAL 61

Query: 330 RMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLN 509
           +M  + + RAILV Q  LT FA+T + E + +  +EVF E+EL+VNI  H LVPEH+ L 
Sbjct: 62  KMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLT 121

Query: 510 DTEKKTLLERYTVKETQLPRIQ 575
             EK+ LLERY VKE QLPRIQ
Sbjct: 122 AEEKRLLLERYKVKENQLPRIQ 143

[86][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
           Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
          Length = 205

 Score =  132 bits (333), Expect = 1e-29
 Identities = 72/168 (42%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
           E+ IT+ Y+ RKT  +ML+DR Y++   E       FK+++ EN K R  + I  + K+ 
Sbjct: 2   EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61

Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
            +++I V+F +E K  GVK ++  T +M+ +++ RAILV Q +LTPFAR  + E A +  
Sbjct: 62  ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E F + ELLVNI +H LVP H  L   EK+ LL+RY +KE +LPRIQ
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQ 169

[87][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
           Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
          Length = 221

 Score =  131 bits (330), Expect = 3e-29
 Identities = 63/180 (35%), Positives = 111/180 (61%), Gaps = 14/180 (7%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--------------ENM 212
           +  E+ +L+R+ +TV +M++DR YL+ D+E+N++  EFKD++G              ++ 
Sbjct: 5   ANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSS 64

Query: 213 KREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPF 392
            R ++  +   ++  +D+I+V+F  +  V   +MKT+   M+     R I++    ++P 
Sbjct: 65  SRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPA 124

Query: 393 ARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           A+  + E+ S++HLE F E++LLVNI +H LVP+H V+   EK  L++RY +KETQLPRI
Sbjct: 125 AKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRI 184

[88][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
           falciparum 3D7 RepID=Q8ID59_PLAF7
          Length = 205

 Score =  130 bits (326), Expect = 9e-29
 Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-MKREDLVINKTKKDK 254
           E+ +T+ Y+ RKT  +ML+DR Y++   E       FK+ + +N  +R  + I+ T K+ 
Sbjct: 2   EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61

Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
            +++I V+F +E K  GVK ++  T RM  +++ RAILV Q  LTPFAR  + E A +  
Sbjct: 62  SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E F + ELLVNI +H LVP H  L   EKK LL+RY + E +LPRIQ
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQ 169

[89][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
           Tax=Babesia bovis RepID=A7APR4_BABBO
          Length = 205

 Score =  128 bits (322), Expect = 3e-28
 Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKD 251
           ++E  +L+R R+T  +ML+DR Y + + E   T  EFK +Y   + ++ + L++   K D
Sbjct: 2   DDEEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKMLLVASLKTD 61

Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
           K +  +  F  E  K GVK ++  T +M   ++ RAILV Q  LTPFA+  + E A +  
Sbjct: 62  KDAKLLVYFADETKKTGVKPIRELTEKMEDHDIHRAILVTQNVLTPFAKDAILEAAPRNI 121

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E F E ELLVNI +H LVP+H  L   EK+TLL+RY VKE+Q+PRIQ
Sbjct: 122 IENFLETELLVNITKHELVPKHIPLTADEKQTLLQRYKVKESQIPRIQ 169

[90][TOP]
>UniRef100_B5XGU7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Salmo salar RepID=B5XGU7_SALSA
          Length = 159

 Score =  128 bits (321), Expect = 4e-28
 Identities = 64/139 (46%), Positives = 91/139 (65%), Gaps = 5/139 (3%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           +EE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA +V Q  +TP A+  + ++A 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123

Query: 423 KFHLEVFQEAELLVNIKEH 479
           K+ LE F + ELL+NI EH
Sbjct: 124 KYILEQFLQQELLINITEH 142

[91][TOP]
>UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4
           RepID=UPI00004E3EE0
          Length = 181

 Score =  126 bits (317), Expect = 1e-27
 Identities = 70/152 (46%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
 Frame = +3

Query: 126 MLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQIYVFFPEEAKVGV 305
           ML DR Y++  +E    +  F       + RE+L +   KKD P+D IYVFFP+  KVGV
Sbjct: 1   MLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53

Query: 306 KTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA--SKFHLEVFQEAELLVNIKEH 479
             +K Y + M      RAI+V Q ++TPFA+  ++E +   K  LE F EAELLVNI  H
Sbjct: 54  TQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHH 113

Query: 480 VLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            LVP+H +L   EK  LL RY +KE+QLPRIQ
Sbjct: 114 QLVPKHILLTKEEKLELLTRYKMKESQLPRIQ 145

[92][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6JZQ6_SCHJY
          Length = 211

 Score =  126 bits (317), Expect = 1e-27
 Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKK 248
           E  I K++R+ KTV Q++ DR Y V   EL +T  +F+  +   G N+ R  L     K 
Sbjct: 6   ERNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFY-AKP 64

Query: 249 DKPSDQ--IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
              SD+  IYV F +E  VG+K M+T+ + +   N    IL+   ++TP A   +S +  
Sbjct: 65  PPGSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIISTVTG 124

Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +F +E FQE++L+VNI  H LVP+H +L   EKK LL+RY ++ETQLPRIQ
Sbjct: 125 QFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKLRETQLPRIQ 175

[93][TOP]
>UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FEX9_MAIZE
          Length = 127

 Score =  125 bits (315), Expect = 2e-27
 Identities = 61/91 (67%), Positives = 74/91 (81%)
 Frame = +3

Query: 303 VKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHV 482
           +K +K Y   M  ENV RA+LV Q +LTPFA++ + E+  K HLE+FQEAE+L+NIKEHV
Sbjct: 1   MKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHV 60

Query: 483 LVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           LVPEHQVL + EKKTLLERYT+KETQLPRIQ
Sbjct: 61  LVPEHQVLTNEEKKTLLERYTLKETQLPRIQ 91

[94][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
          Length = 210

 Score =  125 bits (315), Expect = 2e-27
 Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVIN 236
           M   E+ I +++R  KT  Q++ DR Y V   EL++T  +FK  +   G N+ R  L   
Sbjct: 1   MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60

Query: 237 -KTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSE 413
            K   D     IY+ F +E  VG+K M+T+ + +   N    IL+   S+TP A   ++ 
Sbjct: 61  AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIAT 120

Query: 414 IASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +  +F +E FQE++L+VNI  H LVP+H +L+  EKK LL+RY ++ETQLPRIQ
Sbjct: 121 VTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQ 174

[95][TOP]
>UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium
           muris RN66 RepID=B6AE06_9CRYT
          Length = 205

 Score =  125 bits (314), Expect = 2e-27
 Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
 Frame = +3

Query: 90  TKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKDKPSD 263
           T+ +R R+T+ +ML+DR Y+V   + +     FK+++   + ++   L++   K+D+   
Sbjct: 6   TRFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQDQTKR 65

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
            I  F  E  K GVK ++    +M+  N+ RAIL+ Q  LT  A+  + + A K ++E F
Sbjct: 66  IICYFADESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESF 125

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            E ELLVNI  H LVP+H +L+D EK  LLERY VKETQLPRIQ
Sbjct: 126 LENELLVNITRHELVPKHVLLSDEEKSQLLERYKVKETQLPRIQ 169

[96][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
           theta RepID=Q98RN7_GUITH
          Length = 214

 Score =  122 bits (305), Expect = 3e-26
 Identities = 66/174 (37%), Positives = 111/174 (63%), Gaps = 9/174 (5%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDF--ELNMTKHEFKDKYGEN--MKREDLVINKTK 245
           ++ I  L+++R+TV+QM++DR Y+V D   +LN+++  F++ Y +N  + R+ L I + +
Sbjct: 4   DKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPR 63

Query: 246 KDKPSDQIYVFFPEEAK----VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSE 413
            D P ++I + F E  K    +GVK+++ +  R+ +E   R +++    LTP A+  VS 
Sbjct: 64  WDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSS 123

Query: 414 IASKFHL-EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           I S   L E F E EL+VNI  H+LVP+H++L+  E K+LLERY++K   LP+I
Sbjct: 124 INSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIKFDHLPKI 177

[97][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
           RepID=Q4N141_THEPA
          Length = 205

 Score =  122 bits (305), Expect = 3e-26
 Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
           ++E  +L+R R+T  +ML+DR Y +   E   T  EFK +Y  + K R  +++  +++  
Sbjct: 2   DDEEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTA 61

Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
             +++ V+F +E K  GVK ++  T RM   ++ RAILV Q  LTPFA+  + E   K  
Sbjct: 62  SENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E F E ELLVNI +H LVP+H  L   EK+ LL++Y VKE+Q+PRIQ
Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQ 169

[98][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
           Tax=Theileria annulata RepID=Q4U8E3_THEAN
          Length = 205

 Score =  120 bits (301), Expect = 7e-26
 Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
           ++E  +L+R R+T  +ML+DR Y +   E   T  EFK +Y    K R  +++  + +  
Sbjct: 2   DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTA 61

Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
             +++ V+F +E K  GVK ++  T RM   ++ RAILV Q  LTPFA+  + E   K  
Sbjct: 62  AENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +E F E ELLVNI +H LVP+H  L   EK+ LL++Y VKE+Q+PRIQ
Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQ 169

[99][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
           albicans RepID=C4YG42_CANAL
          Length = 214

 Score =  120 bits (300), Expect = 1e-25
 Identities = 67/176 (38%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKT- 242
           ++  +++L+R  KTV +M++DR Y +   EL+MT  EF+ K  ++M   +R+ +    T 
Sbjct: 4   TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63

Query: 243 -----KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
                +K   +  ++V F +EA VG+KTM+ +   +  +N    I + Q S+TP A   +
Sbjct: 64  TAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLI 123

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             + S   +E+FQE +L+VNI  H LVP+H  LN  EKK LL RY +KE+QLPRIQ
Sbjct: 124 PTV-SPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQLPRIQ 178

[100][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
           Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
          Length = 214

 Score =  119 bits (298), Expect = 2e-25
 Identities = 66/176 (37%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKT- 242
           ++  +++L+R  KTV +M++DR Y +   EL+MT  EF+ K  ++M   +R+ +    T 
Sbjct: 4   TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63

Query: 243 -----KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
                +K   +  ++V F +E+ VG+KTM+ +   +  +N    I + Q S+TP A   +
Sbjct: 64  TGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLI 123

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             + S   +E+FQE +L+VNI  H LVP+H  LN  EKK LL RY +KE+QLPRIQ
Sbjct: 124 PTV-SPATIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRLKESQLPRIQ 178

[101][TOP]
>UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium
           RepID=Q5CNJ4_CRYHO
          Length = 205

 Score =  117 bits (292), Expect = 8e-25
 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
 Frame = +3

Query: 93  KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKDKPSDQ 266
           + +R R+T+ +ML+DR Y+V   +       FK+++   + ++   L++   ++D+    
Sbjct: 7   RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 66

Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446
           I  F  E  K GVK ++    +M+   + RAIL+ Q  LT  A+  + + A K ++E F 
Sbjct: 67  ICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFL 126

Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           E ELLVNI +H LVP+H +L+D EK  LL+RY +KETQLPRIQ
Sbjct: 127 ENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQ 169

[102][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
           RepID=C5DNB3_LACTC
          Length = 215

 Score =  117 bits (292), Expect = 8e-25
 Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKR---------EDL 227
           +E  +++L+R  KTV +M++DR Y +   E++++  +FK KY ++M R          + 
Sbjct: 5   NERNVSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64

Query: 228 VINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
           V    +K      ++V F +EA VG+KTMK +   ++ +N    I V Q  +TP A   +
Sbjct: 65  VEEALEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNGVTPSAMKLL 124

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             +A    +E F EA L+VNI  H LVP+H  L+D EKK LL RY +KE+QLPRIQ
Sbjct: 125 PSVAPAT-IETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRLKESQLPRIQ 179

[103][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
          Length = 210

 Score =  116 bits (291), Expect = 1e-24
 Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           E E  +LY++  T+ QM  DR + V    +NMT   + + YGE   R++L     K D  
Sbjct: 4   EAERYRLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGE-YPRKELSFPVQKVDDD 62

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK---F 428
           +D ++VFFPE   V V  +K+  +R+ S+N+ RAI+V Q  + P A++ +  +  +   +
Sbjct: 63  NDGLFVFFPESPDVKVAAIKSLYDRLKSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPY 122

Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            +E F EAEL+ N+  H LVP H++L ++EK+ LLERY V E +LP+IQ
Sbjct: 123 IVETFAEAELVYNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLPQIQ 171

[104][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
           DSM 70294 RepID=A7TEH4_VANPO
          Length = 215

 Score =  116 bits (291), Expect = 1e-24
 Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI------- 233
           SE  I++L+R  +TV +M++DR Y +   E++++  +FK KY ++M R    +       
Sbjct: 5   SERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANP 64

Query: 234 -NKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
             +T +  P+   ++V F +E  VGVKTMK +   +  +N    I V QT++TP A   V
Sbjct: 65  TEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             I     +E F EA L+VNI  H LVP+H  L++ EKK LL++Y +KE+QLPRIQ
Sbjct: 125 PSIPPAT-IETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRLKESQLPRIQ 179

[105][TOP]
>UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP
          Length = 216

 Score =  114 bits (286), Expect = 4e-24
 Identities = 62/173 (35%), Positives = 112/173 (64%), Gaps = 9/173 (5%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLV--GDFELNMTKHEFKDKYGENMK--REDLVINKTKK 248
           +EI  L++IR+T++QML+DR+Y+V     +L M++  F+ K+ +N +  R +L IN++K 
Sbjct: 6   KEILNLFKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKW 65

Query: 249 DKPSDQIYVFF----PEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI 416
            + + +I V F     E++ +GVK+++ +  R+  +    +I+V    LT  A+  ++ I
Sbjct: 66  LEENMRILVVFIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSI 125

Query: 417 AS-KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
            S    +E F E+EL+VNI EH LVP+H+++++ E + L +RY+++E QLPRI
Sbjct: 126 NSLDDKIEYFSESELIVNITEHNLVPKHEIISEEEARCLFKRYSIRENQLPRI 178

[106][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
           tropicalis MYA-3404 RepID=C5MBX4_CANTT
          Length = 214

 Score =  114 bits (285), Expect = 5e-24
 Identities = 61/176 (34%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKTK 245
           ++  I++L+R  KTV +M++DR Y +   E++MT  EF+ K  ++M   +R+ +      
Sbjct: 4   TDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQAQP 63

Query: 246 KDKPSDQ------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
             +  ++      ++V F +E+ VG+KTM+ +   +  +N    + + Q S+TP A   +
Sbjct: 64  TGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSANKLI 123

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             ++    +E+FQE++L+VNI  H LVP+H  L+  EK  LLERY +KE+QLPRIQ
Sbjct: 124 PTVSPSV-IEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRLKESQLPRIQ 178

[107][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
           RepID=C5DR69_ZYGRC
          Length = 215

 Score =  114 bits (285), Expect = 5e-24
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           +E  I++L+R  KTV +M+KDR Y +   E+ +   +FK KY ++M R    +   + + 
Sbjct: 5   NERNISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNP 64

Query: 255 PSDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
             + I         +V F +E  VGVKTMKT+   +  +N    I V Q ++TP A   V
Sbjct: 65  TEESIAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNVTPSAMKLV 124

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             I     +E F EA L+VNI  H LVP+H   ++ EK+ LL+RY +KE+QLPRIQ
Sbjct: 125 PSIPPAT-IETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRLKESQLPRIQ 179

[108][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
          Length = 215

 Score =  114 bits (285), Expect = 5e-24
 Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 9/175 (5%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           E  I++L+R  KTV +M++DR Y +   E++++  +FK KY ++M +    +   + +  
Sbjct: 6   ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPT 65

Query: 258 SDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
            + I         +V F +EA VGVKTMK +   +  +N    I + Q+ +TP A   + 
Sbjct: 66  EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125

Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             A    +E F EA L+VNI  H LVP+H  L++ EKK LL+RY +KE+QLPRIQ
Sbjct: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQ 179

[109][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
           RepID=Q9LUR5_ARATH
          Length = 178

 Score =  114 bits (284), Expect = 7e-24
 Identities = 70/172 (40%), Positives = 95/172 (55%), Gaps = 3/172 (1%)
 Frame = +3

Query: 66  MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
           M   +EEI +L+ +++T+MQMLKDR YL+   E+ MT  EF +KYG+NMKR  L+++K +
Sbjct: 1   MALMDEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLR 60

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTC---VSEI 416
           K                     M T         + RAILV Q  +  F+R     +  +
Sbjct: 61  K---------------------MMT---------MIRAILVVQ-DIKAFSRQALVFLGAV 89

Query: 417 ASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
              FH+EVFQE EL+VN+KEHV VPEHQ L   EK+  LER   +   LPRI
Sbjct: 90  YPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLERKRTRFVVLPRI 141

[110][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
          Length = 215

 Score =  114 bits (284), Expect = 7e-24
 Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI------- 233
           +E  +++L+R  +TV +M++DR Y +   E++++  +FK KY ++M R    +       
Sbjct: 5   NERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64

Query: 234 -NKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
             +T K  P+   ++V F +E  VG+KTMK +   +  +N    I + Q  +TP A   +
Sbjct: 65  TEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLL 124

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             +A    +E F E  L+VNI  H LVP+H  L+D EKK LL+RY +KE+QLPRIQ
Sbjct: 125 PSVAPAT-IETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQ 179

[111][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
          Length = 215

 Score =  113 bits (283), Expect = 9e-24
 Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 9/175 (5%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
           E  I++L+R  +TV +M++DR Y +   E++++  +FK KY ++M +    +   + +  
Sbjct: 6   ERGISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPT 65

Query: 258 SDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
            + I         +V F +EA VGVKTMK +   +  +N    I + Q+ +TP A   + 
Sbjct: 66  EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125

Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             A    +E F EA L+VNI  H LVP+H  L+D EKK LL+RY +KE+QLPRIQ
Sbjct: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQ 179

[112][TOP]
>UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) =
           Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS
           513.88 RepID=A2QAL5_ASPNC
          Length = 235

 Score =  113 bits (282), Expect = 1e-23
 Identities = 73/193 (37%), Positives = 105/193 (54%), Gaps = 24/193 (12%)
 Frame = +3

Query: 69  VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK- 245
           V ++ E+T+L+R  +TV +ML DR Y V + E+ M  HEFK KY + +   D   NK K 
Sbjct: 10  VDADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDR--NKMKI 67

Query: 246 -----------------KDKPSDQ-----IYV-FFPEEAKVGVKTMKTYTNRMNSENVFR 356
                            K  P+ Q     IYV F P+   VG K ++T+ + ++  N   
Sbjct: 68  SARPTEAMQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNHFVDENNFHT 127

Query: 357 AILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLE 536
            + + QT ++P A   +S +  +   E FQE +LLVNI  H LVP+H +L+  EK  LLE
Sbjct: 128 GVFITQTPISPSAVRLLSSMPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLE 186

Query: 537 RYTVKETQLPRIQ 575
           RY +KE+QLPRIQ
Sbjct: 187 RYRLKESQLPRIQ 199

[113][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
           II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
          Length = 213

 Score =  112 bits (281), Expect = 2e-23
 Identities = 66/175 (37%), Positives = 105/175 (60%), Gaps = 9/175 (5%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI-----NKT 242
           +  +++L+R  KTV +M++DR Y +   E++M+  EF+ K  ++M R    +     N T
Sbjct: 4   DRTVSRLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQANPT 63

Query: 243 KK--DKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
            +  DK  D   ++V F +EA VG+KTM+ +   ++ +N    I + Q S+TP A   + 
Sbjct: 64  AESLDKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLIP 123

Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            + S   +E FQE +L+VNI  H LVP+H  L+  EKK LL+RY +KE+QLPR+Q
Sbjct: 124 TV-SPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRLKESQLPRVQ 177

[114][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
           Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
          Length = 215

 Score =  112 bits (281), Expect = 2e-23
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           +E  I++L+R  +TV +M+KDR Y +   E+ +   +FK KY ++M R    +   + + 
Sbjct: 5   NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANP 64

Query: 255 PSDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
             + I         +V F +E  VGVKTMKT+   +  +N    I V Q ++TP A   V
Sbjct: 65  TEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLV 124

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             I     +E F EA L+VNI  H LVP+H  L+  EK+ LL+RY +KE+QLPRIQ
Sbjct: 125 PSIPPAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQ 179

[115][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Candida glabrata RepID=RPAB1_CANGA
          Length = 215

 Score =  112 bits (280), Expect = 2e-23
 Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           ++  I++L+R  +TV +M++DR Y +   EL++T  +FK KY ++M R    +   + + 
Sbjct: 5   NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64

Query: 255 PSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
             +          ++V F +E  VGVKTMKT+   +  +     I + Q ++TP A   V
Sbjct: 65  TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             I     +E F EA L+VNI  H LVP+H  LN+ EK  LL+RY +KE+QLPRIQ
Sbjct: 125 PSIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQ 179

[116][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
           putative n=1 Tax=Entamoeba dispar SAW760
           RepID=B0EA74_ENTDI
          Length = 204

 Score =  112 bits (279), Expect = 3e-23
 Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKKD 251
           E +T +YR  KTV++ML+DR Y+  + + N T   FK+++   GE +  ++L I   K++
Sbjct: 2   ENVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61

Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
             +D I VFF E   +    +  Y   + SE+V RAI+V +  L+   +  + +   +  
Sbjct: 62  DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQ-PREVK 120

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
            E   E EL+VN+  HVLVP+H +L+  EK+ LL++Y VKE+QLPR+
Sbjct: 121 WEALLEDELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRL 167

[117][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
           HM-1:IMSS RepID=C4LW54_ENTHI
          Length = 204

 Score =  111 bits (278), Expect = 3e-23
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKKD 251
           E +T +YR  KTV++ML+DR Y+  + + N T   FK+++   GE +  ++L I   K++
Sbjct: 2   ESVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61

Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
             +D I VFF E   +    +  Y   + SE+V RAI+V +  L+   +  + +   +  
Sbjct: 62  DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQ-PREVK 120

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
            E   E EL+VN+  H+LVP+H +L+  EK+ LL++Y VKE+QLPR+
Sbjct: 121 WEALLEDELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRL 167

[118][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
          Length = 214

 Score =  110 bits (276), Expect = 6e-23
 Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------REDL 227
           ++  I++L+R  KTV +M++DR Y +   E++M+  EF+ +  ++M          + + 
Sbjct: 4   TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63

Query: 228 VINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
                +K      ++V F +EA VG+KTM+ +   ++ +N    I + Q+S+TP A   +
Sbjct: 64  TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             + S   +E FQE +L+VNI  H LVP+H  L   EKK LLERY +KE+QLPRIQ
Sbjct: 124 PTV-SPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQ 178

[119][TOP]
>UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
           III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG
          Length = 214

 Score =  110 bits (274), Expect = 1e-22
 Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
 Frame = +3

Query: 87  ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKK- 248
           I++L+R  +TV +M  DR Y +   E++ +  EF+ K  ++M     K    + N T + 
Sbjct: 8   ISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLANPTPEA 67

Query: 249 -DKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA 419
            +K SD   ++V F +E  VG+KTM+ +  R+  +N    I + Q ++TP A   +  ++
Sbjct: 68  LEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITPSANKMIPTVS 127

Query: 420 SKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
               +E FQE++L+VNI  H LVP+H  L+D EK  LL+RY +KE+QLPRIQ
Sbjct: 128 PAI-IETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKLKESQLPRIQ 178

[120][TOP]
>UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Yarrowia lipolytica RepID=RPAB1_YARLI
          Length = 212

 Score =  110 bits (274), Expect = 1e-22
 Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFK----DKYGENMKREDLVI--- 233
           S ++  KL+++ +T  +++KDR Y + D E+N++  +F     D  G+ +K++   +   
Sbjct: 2   SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASP 61

Query: 234 --NKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
                +K      I+V F EEA V VKTM+ +   ++       ILV + ++TP A   +
Sbjct: 62  SPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLI 121

Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             +A    ++ FQE +LLVNI +HVLVP H  L+  EKK LLERY +KE+QLPRIQ
Sbjct: 122 PSVAPAT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQ 176

[121][TOP]
>UniRef100_A8QAC6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
           7966 RepID=A8QAC6_MALGO
          Length = 159

 Score =  109 bits (273), Expect = 1e-22
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN--MKREDLVINKTKKD 251
           + E  +L+R+ +T+ +++ DR Y V + ELN+    FK +   N  + R  +      KD
Sbjct: 4   DRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQHKD 63

Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
           KP ++++VF+  E  VGVKTM+ + N +  +N+ R I++    +T  A+  +  +  +  
Sbjct: 64  KPEERLFVFYSTERNVGVKTMRQFINILEEKNITRGIIIWSDKMTSAAKKVIEAMRLQLV 123

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
           LE F+EA LLVNI  H LVP+H+VL   EKK LL R
Sbjct: 124 LEDFEEAFLLVNITHHQLVPKHEVLTPDEKKELLHR 159

[122][TOP]
>UniRef100_UPI000194DF40 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
           n=1 Tax=Taeniopygia guttata RepID=UPI000194DF40
          Length = 119

 Score =  107 bits (268), Expect = 5e-22
 Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 5/112 (4%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398
             D P+DQ++VFFPEE KVG+KT+K Y  RM  EN+ RA++V Q  +TP A+
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAK 115

[123][TOP]
>UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1
           Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH
          Length = 218

 Score =  107 bits (266), Expect = 9e-22
 Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 1/167 (0%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           S  E  K Y  R+T M+ML+DR Y V D ++N++  +F+  YGE+   + L I+   +  
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
            S +I V F     V V  M+    + ++ EN+   ILV Q+ +T  A   V   +  F 
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FK 134

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           +E+F+  +LLVN+ +HVL P+HQVLND EK++LL++++++E QLPR+
Sbjct: 135 VELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRL 181

[124][TOP]
>UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis
           thaliana RepID=Q9M1J2_ARATH
          Length = 222

 Score =  107 bits (266), Expect = 9e-22
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 1/167 (0%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           S EE  + Y  R+  +QML+DR Y V D ++N++ H+F+  YGE    + L I+   +  
Sbjct: 21  SSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
            + ++ + F   + V V  +++   + ++ E +   ILV Q  +T  A   +   +  F 
Sbjct: 81  STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--FK 138

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           +E+FQ  +LLVNI +H L P+HQVLND EK TLL++++++E QLPRI
Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRI 185

[125][TOP]
>UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin
           54-1255 RepID=B6HAG0_PENCW
          Length = 234

 Score =  106 bits (264), Expect = 1e-21
 Identities = 68/189 (35%), Positives = 102/189 (53%), Gaps = 22/189 (11%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
           +E E+T+L+R  +TV ++L DR Y V D EL +   +F+ KY + +   D    K +   
Sbjct: 11  AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARP 70

Query: 246 -------------KDKPSDQ-----IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
                        K  P+ Q     IYV F P+ + VG K ++ + + ++  N    I +
Sbjct: 71  TETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130

Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
            QT ++P A   +S +  +   E FQE +LLVNI  H LVP+H +L+  EK  LLERY +
Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERYRL 189

Query: 549 KETQLPRIQ 575
           KE+QLPRIQ
Sbjct: 190 KESQLPRIQ 198

[126][TOP]
>UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=A2ZBC5_ORYSI
          Length = 227

 Score =  105 bits (263), Expect = 2e-21
 Identities = 58/163 (35%), Positives = 94/163 (57%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+  R+T M+ML+DR Y V + E+  T  EF+  + E    E L    T    PS 
Sbjct: 29  ESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIERLAFTTTLVSDPSK 88

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           ++ + F     V + T++    +   EN+ R +L+ Q+ +   AR  + EI  KF +++F
Sbjct: 89  KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           Q  +LLVNI +HVL P+H+VL+  +K  LL+ Y V+++QLPR+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190

[127][TOP]
>UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1
           Tax=Arabidopsis thaliana RepID=Q8L947_ARATH
          Length = 222

 Score =  105 bits (262), Expect = 2e-21
 Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 1/167 (0%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           S EE  + Y  R+  +Q+L+DR Y V D ++N++ H+F+  YGE    + L I+   +  
Sbjct: 21  SSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
            + ++ + F   + V V  +++   + ++ E +   ILV Q  +T  A   +   +  F 
Sbjct: 81  STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--FK 138

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           +E+FQ  +LLVNI +H L P+HQVLND EK TLL++++++E QLPRI
Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRI 185

[128][TOP]
>UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q2RAP1_ORYSJ
          Length = 227

 Score =  105 bits (262), Expect = 2e-21
 Identities = 58/163 (35%), Positives = 94/163 (57%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+  R+T M+ML+DR Y V + E+  T  EF+  + E    E L    T    PS 
Sbjct: 29  ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           ++ + F     V + T++    +   EN+ R +L+ Q+ +   AR  + EI  KF +++F
Sbjct: 89  KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           Q  +LLVNI +HVL P+H+VL+  +K  LL+ Y V+++QLPR+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190

[129][TOP]
>UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein,
           expressed n=1 Tax=Oryza sativa Japonica Group
           RepID=Q2QXY2_ORYSJ
          Length = 335

 Score =  105 bits (262), Expect = 2e-21
 Identities = 58/163 (35%), Positives = 94/163 (57%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+  R+T M+ML+DR Y V + E+  T  EF+  + E    E L    T    PS 
Sbjct: 137 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 196

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           ++ + F     V + T++    +   EN+ R +L+ Q+ +   AR  + EI  KF +++F
Sbjct: 197 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 255

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           Q  +LLVNI +HVL P+H+VL+  +K  LL+ Y V+++QLPR+
Sbjct: 256 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 298

[130][TOP]
>UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ
          Length = 227

 Score =  105 bits (262), Expect = 2e-21
 Identities = 58/163 (35%), Positives = 94/163 (57%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+  R+T M+ML+DR Y V + E+  T  EF+  + E    E L    T    PS 
Sbjct: 29  ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           ++ + F     V + T++    +   EN+ R +L+ Q+ +   AR  + EI  KF +++F
Sbjct: 89  KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           Q  +LLVNI +HVL P+H+VL+  +K  LL+ Y V+++QLPR+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190

[131][TOP]
>UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces
           dermatitidis RepID=C5G7M7_AJEDR
          Length = 236

 Score =  105 bits (262), Expect = 2e-21
 Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 22/189 (11%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224
           ++ E+T+L+R  +TV +ML DR Y V + E+ +   EF+ +Y + +   D          
Sbjct: 13  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72

Query: 225 --------LVINKTKKDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
                     +  T K  P  +   IYV F P+   VG K ++ + + ++ +N    I +
Sbjct: 73  SQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGIFI 132

Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
            QT ++P A   ++ I  +F  E FQE ELLVNI  H LVP+H +L+  EKK LL+RY +
Sbjct: 133 SQTPISPSAIRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191

Query: 549 KETQLPRIQ 575
           KE+QLPRIQ
Sbjct: 192 KESQLPRIQ 200

[132][TOP]
>UniRef100_Q4P7S7 Putative uncharacterized protein n=1 Tax=Ustilago maydis
           RepID=Q4P7S7_USTMA
          Length = 554

 Score =  105 bits (261), Expect = 3e-21
 Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKK 248
           + E  +L+R+ +T+ ++++DR Y V D E+++    FK +Y   G ++ R  L       
Sbjct: 4   DRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHG 63

Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428
           +  + +++VF+  +  VGVKTM+ + + M   ++ R I++    +T  AR  +  +   F
Sbjct: 64  EHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123

Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
           HLE F+EA LLVNI  H LVP+H+ L   EKK LL+R
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160

[133][TOP]
>UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4
          Length = 287

 Score =  105 bits (261), Expect = 3e-21
 Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
 Frame = +3

Query: 96  LYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKR-----EDLVINKTKKD 251
           L  IR  + +   D  Y + D E+NMT  EFK K    GE  ++             +K 
Sbjct: 85  LQTIRTKIWKSSGDIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKF 144

Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
                ++V F +EA VG+KTM+ +   ++ +N    I + QTS+TP A   +  + S   
Sbjct: 145 PEMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSITPSANKLIPTV-SPAT 203

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           +EVFQE++L+VNI  H LVP+H  L+  EKK LL+RY +KE+QLPRIQ
Sbjct: 204 IEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRYRLKESQLPRIQ 251

[134][TOP]
>UniRef100_B7T1F2 RNA polymerase II (Fragment) n=1 Tax=Oreochromis niloticus
           RepID=B7T1F2_ORENI
          Length = 108

 Score =  104 bits (260), Expect = 4e-21
 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 5/107 (4%)
 Frame = +3

Query: 93  KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKKDKP 257
           +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +     D P
Sbjct: 1   RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398
           +DQ++VFFPEE KVG+KT+K Y  RM  EN+ RAI+V Q  +TP A+
Sbjct: 61  TDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAK 107

[135][TOP]
>UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9ST46_RICCO
          Length = 238

 Score =  104 bits (260), Expect = 4e-21
 Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  + Y  R+TV++ML+DR Y V   E++++  EF+  +G N   + L  + T    PS 
Sbjct: 40  ETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSK 99

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           ++ V F     + V T++    ++ N +++   ILV Q  +T  A   V     KF +E+
Sbjct: 100 RMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLF--KFKVEM 157

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           FQ  +LLVNI +HVL P+HQVL D EK+ LL+ Y ++E QLPR+
Sbjct: 158 FQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201

[136][TOP]
>UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN
          Length = 236

 Score =  104 bits (260), Expect = 4e-21
 Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
           ++ E+T+L+R  +TV +ML DR Y V + E+ ++  EF+ +Y + +   D   NK K   
Sbjct: 13  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDR--NKMKISA 70

Query: 246 -----------------KDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
                            K  P  +   IYV F  +   VG K ++ + + ++ +N    I
Sbjct: 71  RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130

Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542
            V QT ++P A   ++ I  +F  E FQE ELLVNI  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 543 TVKETQLPRIQ 575
            +KE+QLPRIQ
Sbjct: 190 RLKESQLPRIQ 200

[137][TOP]
>UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb18 RepID=C1FYH2_PARBD
          Length = 236

 Score =  104 bits (259), Expect = 6e-21
 Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
           ++ E+TKL+R  +TV +ML DR Y V + E+ +   EF+ +Y + +   D   NK K   
Sbjct: 13  ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDR--NKMKISA 70

Query: 246 -----------------KDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAI 362
                            K  P  +   IYV F  + + VG K ++ + + ++ +N    I
Sbjct: 71  RPSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGI 130

Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542
            + QT ++P A   ++ I  +F  E FQE ELLVNI  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FISQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189

Query: 543 TVKETQLPRIQ 575
            +KE+QLPRIQ
Sbjct: 190 RLKESQLPRIQ 200

[138][TOP]
>UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR
          Length = 216

 Score =  103 bits (258), Expect = 7e-21
 Identities = 60/164 (36%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  + Y  R+TV++MLKDR Y V   E++++  +F+  YG+N   E L  + T K  PS 
Sbjct: 18  ESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSK 77

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNS-ENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           ++ V F     V V  ++  T ++   +++   ILV Q ++T  A   +     KF +E+
Sbjct: 78  RMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLF--KFKIEI 135

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           FQ  +LLVNI +H+L P+HQVL++  K+ LL++Y+++E QLPR+
Sbjct: 136 FQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRL 179

[139][TOP]
>UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb01 RepID=C1GUJ0_PARBA
          Length = 236

 Score =  103 bits (258), Expect = 7e-21
 Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
           ++ E+TKL+R  +TV +ML DR Y V + E+ +   EF+ +Y + +   D   NK K   
Sbjct: 13  ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70

Query: 246 -----------------KDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAI 362
                            K  P  +   IYV F  + + VG K ++ + + ++ +N    I
Sbjct: 71  RPSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGI 130

Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542
            + QT ++P A   ++ I  +F  E FQE ELLVNI  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FISQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189

Query: 543 TVKETQLPRIQ 575
            +KE+QLPRIQ
Sbjct: 190 RLKESQLPRIQ 200

[140][TOP]
>UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
           RepID=C0NL28_AJECG
          Length = 236

 Score =  103 bits (258), Expect = 7e-21
 Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 24/191 (12%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
           ++ E+T+L+R  +TV +ML DR Y V + E+ +   EF+ +Y + +   D   NK K   
Sbjct: 13  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70

Query: 246 -----------------KDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
                            K  P  +   IYV F  +   VG K ++ + + ++ +N    I
Sbjct: 71  RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130

Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542
            V QT ++P A   ++ I  +F  E FQE ELLVNI  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 543 TVKETQLPRIQ 575
            +KE+QLPRIQ
Sbjct: 190 RLKESQLPRIQ 200

[141][TOP]
>UniRef100_B7Q5X9 RNA polymerase, 25-kDa subunit, putative n=1 Tax=Ixodes scapularis
           RepID=B7Q5X9_IXOSC
          Length = 91

 Score =  102 bits (254), Expect = 2e-20
 Identities = 49/91 (53%), Positives = 65/91 (71%)
 Frame = +3

Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446
           ++VFFP+E K+G+KT+KTY  RM  EN+ RAI+V Q  +TP A+  + ++A K+ LE F 
Sbjct: 1   MFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFL 60

Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
           E+ELL+NI EH LVPEH VL   EK  LL R
Sbjct: 61  ESELLINITEHELVPEHVVLTPEEKAELLAR 91

[142][TOP]
>UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2
           Tax=Emericella nidulans RepID=C8VQY1_EMENI
          Length = 235

 Score =  102 bits (254), Expect = 2e-20
 Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 22/189 (11%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY-GEN--MKREDLVINK-- 239
           +E E  +++R  +TV +ML+DR Y V + E+ +   EFK KY GE     RE L I    
Sbjct: 12  AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARP 71

Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
                   T    PS++        IY+ F P+++ +G K ++T+ + ++  N    I +
Sbjct: 72  TEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFI 131

Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
            +T ++P A   +S I  +   E FQE +LLVNI  H LVP+H +L+  EK  LL+RY +
Sbjct: 132 TKTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRYRL 190

Query: 549 KETQLPRIQ 575
           KE+QLPRIQ
Sbjct: 191 KESQLPRIQ 199

[143][TOP]
>UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
           Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR
          Length = 248

 Score =  102 bits (253), Expect = 3e-20
 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 1/164 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  + Y  R+TV++MLKDR Y +   E+ ++  +F+  +G++   + L +  T    PS 
Sbjct: 50  ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           +I V F     V V  ++    ++ N E++   IL+ Q  +T  A   V+ ++  F +E+
Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           FQ  +LLVN  +HVL P+HQVL D +KK LL++Y ++E QLPR+
Sbjct: 168 FQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRM 211

[144][TOP]
>UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides
           RepID=C5PAC2_COCP7
          Length = 236

 Score =  100 bits (250), Expect = 6e-20
 Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 22/189 (11%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224
           ++ E+T+L+R  +TV +ML DR Y V + E+N+   EF+ KY + +   D          
Sbjct: 13  ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARP 72

Query: 225 ---LVINKTKKDKPSDQ--------IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILV 368
              ++   T    P+          IYV F  +A+ VG K ++ + + ++ +N    I +
Sbjct: 73  SQTMIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFI 132

Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
            Q+ ++P A   ++ I  +F  E F E ELLVNI  H LVP+H +L+  EKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191

Query: 549 KETQLPRIQ 575
           KE+QLPRIQ
Sbjct: 192 KESQLPRIQ 200

[145][TOP]
>UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus
           RepID=A1CP51_ASPCL
          Length = 234

 Score =  100 bits (250), Expect = 6e-20
 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 22/189 (11%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINK----- 239
           ++ E+T+L+R  +TV +ML DR Y V + E+ +   EF+ KY + +   D    K     
Sbjct: 11  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARP 70

Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
                   T    P++         IYV F  + + VG K ++ + + ++  N    + +
Sbjct: 71  TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFI 130

Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
            QT ++P A   +S I  +   E FQE +LLVNI  H LVP+H +L+  EKK LL+RY +
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189

Query: 549 KETQLPRIQ 575
           KE+QLPRIQ
Sbjct: 190 KESQLPRIQ 198

[146][TOP]
>UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum
           bicolor RepID=C5Y4H1_SORBI
          Length = 263

 Score =  100 bits (248), Expect = 1e-19
 Identities = 58/163 (35%), Positives = 89/163 (54%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+  R+T ++ML+DR Y V + EL  T  EF+  + +  + E L  + T    PS 
Sbjct: 65  ESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPELERLAFSTTLASDPSS 124

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           ++ V F     V +  ++     +  EN+ R IL+ Q  +   AR  + EI   + ++ F
Sbjct: 125 KVKVVFCPPEPVKIAAIRVVYTGVKDENLSRLILILQGRIMSKAREAIKEI-FPYKVDTF 183

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           Q  ELLVNI +H L P+HQVL   EK  LL+ Y V ++QLPR+
Sbjct: 184 QITELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRM 226

[147][TOP]
>UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1D205_NEOFI
          Length = 234

 Score =  100 bits (248), Expect = 1e-19
 Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 22/189 (11%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINK----- 239
           ++ E+T+L+R  +TV +ML DR Y V + E+ +   EF+ KY + +   D    K     
Sbjct: 11  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARP 70

Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
                   T    P++         IYV F  +   VG K ++ + + ++  N    + +
Sbjct: 71  TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFI 130

Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
            QT ++P A   +S I  +   E FQE +LLVNI  H LVP+H +L+  EKK LL+RY +
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189

Query: 549 KETQLPRIQ 575
           KE+QLPRIQ
Sbjct: 190 KESQLPRIQ 198

[148][TOP]
>UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE
          Length = 239

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 25/192 (13%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224
           +  E+T+L+R  KTV +ML DR Y V + E+ ++ ++F+ KY + +   D          
Sbjct: 13  ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72

Query: 225 ------LVINKTKKDKPSDQ--------IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRA 359
                 ++   T    P+          IYV F  +A+ VG K ++ + + ++ +N    
Sbjct: 73  ARPSQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG 132

Query: 360 ILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
           I + Q+ ++P A   ++ I  +F  E F E ELLVNI  H LVP+H +L+  EKK LL R
Sbjct: 133 IFITQSPISPSAVRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHR 191

Query: 540 YTVKETQLPRIQ 575
           Y +KE+QLPRIQ
Sbjct: 192 YRLKESQLPRIQ 203

[149][TOP]
>UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
           Tax=Medicago truncatula RepID=Q2HW77_MEDTR
          Length = 224

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           S  E  + +  RKT+M ML DR Y V + +L ++  EF+ ++GE  K   L ++ + +  
Sbjct: 23  SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
           PS ++ V FP    +    +    +++ + E + R ILV Q+ +T +AR  +      F 
Sbjct: 83  PSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELENCP--FK 140

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           +E+ Q  +LLVN+ +HVL P+++VL   EK+ LL +Y V+E QLP +
Sbjct: 141 VEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLPHM 187

[150][TOP]
>UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
           1980 UF-70 RepID=A7ECH0_SCLS1
          Length = 242

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 24/190 (12%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN---MKREDLVINKTKK 248
           + E  KL+R  +TV +M++DR YL+ + E+NM+   FK K+  N   + R  +  + T  
Sbjct: 16  DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFSATPS 75

Query: 249 DK--------PSDQ-----------IYVFF--PEEAKVGVKTMKTYTNRMNSENVFRAIL 365
           +         P+ Q           I+V F    +  +G+K M+T+   ++  N    IL
Sbjct: 76  EAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135

Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
           +     +  A+  +  +AS   +E F E +LLVNI  H LVP+H +L+  E+  LL RY 
Sbjct: 136 IAPVPPSGPAQKIIPAVASDTRIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYR 195

Query: 546 VKETQLPRIQ 575
           +K+TQLPRIQ
Sbjct: 196 LKDTQLPRIQ 205

[151][TOP]
>UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
           B05.10 RepID=A6SPK6_BOTFB
          Length = 242

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 24/190 (12%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-------------MKR 218
           + E  KL+R  +TV +M++DR YL+ + E+NM+   FK K+  N                
Sbjct: 16  DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFSATPS 75

Query: 219 EDLVI-----------NKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365
           E ++            N T  +  +  I      +  +G+K M+T+   ++  N    IL
Sbjct: 76  EAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135

Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
           +   + +  A+  +  +AS+  +E F E +LLVNI  H LVP+H +L+  E+  LL RY 
Sbjct: 136 IAPVAPSGPAQKIIPAVASETRIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYR 195

Query: 546 VKETQLPRIQ 575
           +K+TQLPRIQ
Sbjct: 196 LKDTQLPRIQ 205

[152][TOP]
>UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
           RepID=B6TJI5_MAIZE
          Length = 264

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 57/163 (34%), Positives = 88/163 (53%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+  R+T ++ML+DR Y V + EL  T  EF+  +    + E L  + T    PS 
Sbjct: 66  ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLASDPSS 125

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           ++ V F     V +  ++     +  EN+ R IL+ Q  +    R  + EI  +F ++ F
Sbjct: 126 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 184

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           Q  ELLVNI +HVL P+H+VL    K  LL+ Y V ++QLPR+
Sbjct: 185 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRM 227

[153][TOP]
>UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FYH9_MAIZE
          Length = 248

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 57/163 (34%), Positives = 88/163 (53%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+  R+T ++ML+DR Y V + EL  T  EF+  +    + E L  + T    PS 
Sbjct: 50  ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 109

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           ++ V F     V +  ++     +  EN+ R IL+ Q  +    R  + EI  +F ++ F
Sbjct: 110 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 168

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           Q  ELLVNI +HVL P+H+VL    K  LL+ Y V ++QLPR+
Sbjct: 169 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRM 211

[154][TOP]
>UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QJL2_VITVI
          Length = 229

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  + Y  R+T+++ML+DR Y +   +++++  +F+  Y +    + L I+   +  PS 
Sbjct: 31  ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 90

Query: 264 QIYVFFPEEAKVGVKTMKTY-TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           +I V F     V V  +++  T  +N +++ + ILV Q  +T  A   V   +  F +E 
Sbjct: 91  KILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQVEK 148

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           FQ  +LLVNI +HVL P+H+VL D EK  LL++Y++ E QLPR+
Sbjct: 149 FQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRM 192

[155][TOP]
>UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA
          Length = 223

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 57/159 (35%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
 Frame = +3

Query: 99  YRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQIYVF 278
           Y  R+T M+ML+DR Y + + ++N+T  EF+  YG+    + L I+       S +I V 
Sbjct: 29  YLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRISAQHCSDSSKKIAVV 88

Query: 279 FPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAE 455
           F     V V  ++    + +  EN+   ILV Q+ +T  A   V   +  F +E+FQ  E
Sbjct: 89  FCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFS--FKVELFQLTE 146

Query: 456 LLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           LLVNI +HVL P+H VLN+ EK++L ++++++E QLP++
Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKL 185

[156][TOP]
>UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
           RepID=B6QBA7_PENMQ
          Length = 236

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 23/190 (12%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVIN--- 236
           +  E+ +L+R  +TV +ML+DR Y + + EL +   +F +K+ ++     RE + I    
Sbjct: 12  ARNEMARLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIP 71

Query: 237 ----KTK----KDKPSD--------QIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAIL 365
               K K    K +P+D        QI+V F E+   VG K ++ + + ++  N    I 
Sbjct: 72  SEAMKAKYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIF 131

Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
           + +T+++P A   ++        E FQE++LLVNI  H LVP+H +L+  EK  LLERY 
Sbjct: 132 ITRTAISPSAVRLLNSAIGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190

Query: 546 VKETQLPRIQ 575
           +KE+QLPRIQ
Sbjct: 191 LKESQLPRIQ 200

[157][TOP]
>UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500
           RepID=B8M3B9_TALSN
          Length = 236

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG----------------- 203
           +  E+ +L+R  +TV +ML+DR Y + + E+ +   +F +K+G                 
Sbjct: 12  ARNEMARLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMP 71

Query: 204 -ENMKREDLVINKTKKDKPS----DQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAIL 365
            E MK +   + K   D         IYV F E+   VG K ++ + + ++  N    I 
Sbjct: 72  SEAMKAKYTPLKKRVSDPDPVPDCGPIYVQFCEDTTGVGAKQVRAFNHLVDEGNYHSGIF 131

Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
           + +T+++P A   +S        E FQE++LLVNI  H LVP+H +L+  EK  LLERY 
Sbjct: 132 ITRTAISPSAMRLLSSAVGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190

Query: 546 VKETQLPRIQ 575
           +KE+QLPRIQ
Sbjct: 191 LKESQLPRIQ 200

[158][TOP]
>UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SXN9_SOYBN
          Length = 237

 Score = 95.5 bits (236), Expect = 3e-18
 Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 1/164 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  + Y  R+T ++MLKDR Y +   E++++  +F+D +G+    + L ++ T     S 
Sbjct: 39  ESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLSLTHATNSSK 98

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           +I V F     V V  ++    ++ N + +   IL+ +  +T  A   V+  +  F +E+
Sbjct: 99  RILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFS--FKVEI 156

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           FQ  +LLVNI +HVL P+HQVL D +K  LL++Y ++E QLPR+
Sbjct: 157 FQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRM 200

[159][TOP]
>UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans
           RepID=Q59PF3_CANAL
          Length = 179

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 9/144 (6%)
 Frame = +3

Query: 171 MTKHEFKDKYGENM---KREDLVINKT------KKDKPSDQIYVFFPEEAKVGVKTMKTY 323
           MT  EF+ K  ++M   +R+ +    T      +K   +  ++V F +EA VG+KTM+ +
Sbjct: 1   MTLEEFRSKICDSMGTPQRKQMCFQATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNF 60

Query: 324 TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQV 503
              +  +N    I + Q S+TP A   +  + S   +E+FQE +L+VNI  H LVP+H  
Sbjct: 61  CIHITEKNFSTGIFIYQNSMTPSANKLIPTV-SPATIEIFQENDLIVNITHHELVPKHLK 119

Query: 504 LNDTEKKTLLERYTVKETQLPRIQ 575
           LN  EKK LL RY +KE+QLPRIQ
Sbjct: 120 LNREEKKELLTRYRLKESQLPRIQ 143

[160][TOP]
>UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI0001985D3D
          Length = 1260

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
 Frame = +3

Query: 48  HTNGVTMVFSEE----EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK 215
           H NG  +    E    E  + Y  R+T+ QML DR Y V   EL  +  +F+  +G N  
Sbjct: 8   HGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPD 67

Query: 216 REDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA 395
              L I       PS +I V F    ++    ++    ++N E + R ILV Q+ +   A
Sbjct: 68  PSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHA 127

Query: 396 RTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           R  V E   K  +E FQ  ELL+NI +HV VP+H++L+  EK+ L+ +Y +++ Q P +Q
Sbjct: 128 RKVVDEYPIK--VEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQ 185

[161][TOP]
>UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence
           n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI
          Length = 221

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
 Frame = +3

Query: 48  HTNGVTMVFSEE----EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK 215
           H NG  +    E    E  + Y  R+T+ QML DR Y V   EL  +  +F+  +G N  
Sbjct: 8   HGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPD 67

Query: 216 REDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA 395
              L I       PS +I V F    ++    ++    ++N E + R ILV Q+ +   A
Sbjct: 68  PSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHA 127

Query: 396 RTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           R  V E   K  +E FQ  ELL+NI +HV VP+H++L+  EK+ L+ +Y +++ Q P +Q
Sbjct: 128 RKVVDEYPIK--VEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQ 185

[162][TOP]
>UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1
           Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA
          Length = 202

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
           S E+ +  +RI  T+ QM++DR Y V    L ++  +F   Y  N       +N+   + 
Sbjct: 2   SSEKESMYFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHN----LNECYSNM 57

Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTS-LTPFARTCVSEIASKFH 431
             ++I  FF    ++  KT++T    M+   V RAI++     LTP A   +  + S   
Sbjct: 58  EGERILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGK 117

Query: 432 -LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
            +E F   E+++NI EH LVP+H+VL + EK+ +L+RY V ETQLPRI
Sbjct: 118 TIEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRI 165

[163][TOP]
>UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9RGC5_RICCO
          Length = 239

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  + Y  RKTVM+ML+DR Y V D EL  +  EF  ++G+N     L I+ +    P  
Sbjct: 41  ESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLRISASLHSHPDK 100

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           ++ V F    ++ +  ++    ++ N E++   IL+ Q+ +  +AR  + +  SK  +E+
Sbjct: 101 KMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSK--VEI 158

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           F  ++LLVNI +HVL P H+VL   +K+ LL +++ ++ QLPR+
Sbjct: 159 FHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRM 202

[164][TOP]
>UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN
          Length = 219

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
 Frame = +3

Query: 69  VFSEEEITKLYRIRKTVMQMLKDRN--YLVGDFELNMTKHEFKDKYGENMKREDLVINKT 242
           V ++ E+T+L+R  +TV +ML+DR     +     +  K + + +  E M+ +   + K 
Sbjct: 10  VDADREMTRLWRTWRTVFEMLQDRPSPQRILLTLASRAKMKIQARPTEAMQVKYTPLTKQ 69

Query: 243 -KKDKPSD--QIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
            +   P+D   IYV F P+ + VG K ++ + + ++  N    I + QT ++P A   +S
Sbjct: 70  GQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVRLLS 129

Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            +  +   E FQE +LLVNI  H LVP+H +L+  EKK LL+RY +KE+QLPRIQ
Sbjct: 130 GVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQ 183

[165][TOP]
>UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum
           canis CBS 113480 RepID=C5FC74_NANOT
          Length = 236

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 22/189 (11%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224
           ++ E+ +L+R  +TV ++L DR Y V + E+ ++  EF+ +Y + +   D          
Sbjct: 13  ADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRISARP 72

Query: 225 --------LVINKTKKDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILV 368
                     +  T K   + +   I+V F  E + VG K ++ +   ++ +N    I +
Sbjct: 73  SQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132

Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
            Q+ ++P A   ++ I  +F  E F E ELLVNI  H LVP+H +L+  EKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRL 191

Query: 549 KETQLPRIQ 575
           KE+QLPRIQ
Sbjct: 192 KESQLPRIQ 200

[166][TOP]
>UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR
          Length = 233

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 1/164 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  + Y  R+TV++MLKDR Y V D ELN +  EF+  +G +   + L  + + +  P  
Sbjct: 35  ESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHK 94

Query: 264 QIYVFFPEEAKVGVKTMKT-YTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           +  V F    ++    ++T Y   +N E++   IL+ Q+ +  FA+  + +    F +EV
Sbjct: 95  KTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFP--FKVEV 152

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           FQ  +LLVNI +HVL P+  +L   +K+ ++ +Y +++ QLPR+
Sbjct: 153 FQITDLLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQLPRM 196

[167][TOP]
>UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2VUN9_PYRTR
          Length = 235

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 26/189 (13%)
 Frame = +3

Query: 87  ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN------------------- 209
           + +L+R+ KT  +M+ DR Y+V + ++NM+  +F  KY                      
Sbjct: 11  LMRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYAREDGEPDRSRLNFSCQPSEEM 70

Query: 210 -MKREDLVINKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSL 383
             K  D    K     P+   I+V F  +  VG+K ++ Y   + + +    I++    +
Sbjct: 71  LAKYTDAPTKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKPM 130

Query: 384 TPFARTCVSEIAS-----KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
           T  A   +    S     K  +EVF E +LLVNI +H LVP+H +L+D EK+ LL+RY +
Sbjct: 131 TGMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRL 190

Query: 549 KETQLPRIQ 575
           K+TQLPRIQ
Sbjct: 191 KQTQLPRIQ 199

[168][TOP]
>UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina
           RepID=B2AZ24_PODAN
          Length = 235

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 22/187 (11%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY--GENMKREDLV------- 230
           ++E+++L+R  +T+ +M+ DR Y + + E+ M   EFK K+  G+      ++       
Sbjct: 12  DKEVSRLWRAWRTIHEMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSARPS 71

Query: 231 INKTKKDKPSDQ------------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVC 371
            +  KK  P               I+V F PE+  +G+  MK +     + +    ILV 
Sbjct: 72  ASMIKKFTPPPTASNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAGILVT 131

Query: 372 QTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVK 551
             +L+  AR  ++  +    +E F E +LLVNI  H LVP H +L+  EK  LL+RY +K
Sbjct: 132 AVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKRYRLK 191

Query: 552 ETQLPRI 572
           ETQLPRI
Sbjct: 192 ETQLPRI 198

[169][TOP]
>UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL
          Length = 179

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 9/144 (6%)
 Frame = +3

Query: 171 MTKHEFKDKYGENM---KREDLVINKTKKDKPSDQ------IYVFFPEEAKVGVKTMKTY 323
           MT  EF+ K  ++M   +R+ +    T   +  D+      ++V F +E  VG+KTM+ +
Sbjct: 1   MTLEEFRAKVCDSMGYPQRKLMCFQATPTAEQLDKFPEMGSLWVEFCDEPSVGIKTMRNF 60

Query: 324 TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQV 503
              ++ +N    I + Q S+TP A   +  +     +E FQE +L+VNI  H LVP+H  
Sbjct: 61  CIHISEKNFQVGIFIYQNSITPSANKLIPTVQPA-SIETFQETDLIVNITHHELVPKHIK 119

Query: 504 LNDTEKKTLLERYTVKETQLPRIQ 575
           LN  EKK LLERY +KE+QLPRIQ
Sbjct: 120 LNREEKKELLERYRLKESQLPRIQ 143

[170][TOP]
>UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
           RepID=A4QW70_MAGGR
          Length = 259

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 22/183 (12%)
 Frame = +3

Query: 93  KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE---NMKREDLVINKTKKDK--- 254
           KL+R  +T+ QML DR Y + + E N++   F   + +   N+ +  L  +    D    
Sbjct: 12  KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLK 71

Query: 255 -------PSD--------QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTP 389
                  P+D         I+V F  E K+GV   K +   +        ILV Q +L+ 
Sbjct: 72  LHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSS 131

Query: 390 FARTCVSEIASKFH-LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLP 566
            AR  +S   S  + +E F   +LLVNI  H LVP+H +L+  EKK LLERY +KETQLP
Sbjct: 132 GARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKETQLP 191

Query: 567 RIQ 575
           RIQ
Sbjct: 192 RIQ 194

[171][TOP]
>UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
           RepID=C7Z7I7_NECH7
          Length = 234

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK----- 245
           +E+ +L+R  +TV +M+ DR Y + + E+ ++   F+D+Y       D  IN+ K     
Sbjct: 13  KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCN----PDGSINRAKLQFSA 68

Query: 246 ---------------KDKPSD-----QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365
                           DKP        I+V F  +   GV  ++ +   + + +    I+
Sbjct: 69  RPSESMLRKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTGIM 128

Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
           V    L+P AR  ++ + S   +E F E +LLVNI  H LVP+H +L+  EK  LL+RY 
Sbjct: 129 VTHVPLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYR 188

Query: 546 VKETQLPRI 572
           +KETQLPRI
Sbjct: 189 LKETQLPRI 197

[172][TOP]
>UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR
          Length = 234

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 23/189 (12%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE------------NMKR 218
           + +E+++L+R  +TV +M++DR Y + + E+ ++   FK +Y              + + 
Sbjct: 10  ASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEYTNEDGTPNRAKLQFSARP 69

Query: 219 EDLVINK-TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRA-IL 365
            + +I K T    PS+         I+V F  E+  +GV  MK +     S+N F+A I 
Sbjct: 70  SEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHC-SDNKFKAGIF 128

Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
           +    L+  AR  +S  +    +E F E +LLVNI  H LVP+H +L+  EK  LL+RY 
Sbjct: 129 ITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKRYR 188

Query: 546 VKETQLPRI 572
           +KETQLPRI
Sbjct: 189 LKETQLPRI 197

[173][TOP]
>UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1
           RepID=UPI000023E584
          Length = 253

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-------NMKREDLVINK 239
           +E+ +L+R  +TV +M+ DR Y + + E+ ++   F+D+Y         N  R  L  + 
Sbjct: 13  KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSININYSRNKLSFSA 72

Query: 240 ----------------TKKDKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365
                              D  +D   I++ F  +   GV  ++ + + + S N    I+
Sbjct: 73  RPSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNNYKTGIM 132

Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
           +    L+P AR  ++ + S   +E F E +LLVNI  H LVP+H +L+  EK  LL+RY 
Sbjct: 133 ITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRYR 192

Query: 546 VKETQLPRI 572
           +KETQLPRI
Sbjct: 193 LKETQLPRI 201

[174][TOP]
>UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis
           thaliana RepID=Q9M1H8_ARATH
          Length = 233

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  + Y  R T  +ML+DR Y V + EL++T  EF+  +GE  + E L I    +  P  
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 264 QIYVFFPEEAKVGVKTMKT-YTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
           +I V F     + VK+++  +    N+  +   ILV Q+ +  FA+  ++     F +E 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTF--PFTVET 152

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           F   +LLVNI +H+  P+ ++LN  EK+ LL ++ +++ QLP +Q
Sbjct: 153 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQ 197

[175][TOP]
>UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0UZB4_PHANO
          Length = 277

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 26/192 (13%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-------------NMKR 218
           +  + +++R+ +T  +M+ +R Y V D E+ M+   F DKY               +   
Sbjct: 50  QPSLIRMWRVWRTAKEMMYERGYNVLDEEMTMSLEAFADKYAREDGEPDRSRLNFSSTPS 109

Query: 219 EDLVINKTK---KDKPSD-----QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ 374
           E+++I  T    K +P+       I+  F  +  VG+K ++ + N + S + +  I+V  
Sbjct: 110 EEMLIKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGLKQLRDFMNHLGSGSFYSGIMVTV 169

Query: 375 TSLTPFARTCVSEIAS-----KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
             +T  A   +   ++     K  +EVF E +LLVNI +H LVP+H +L+  EK  LL R
Sbjct: 170 KPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLTR 229

Query: 540 YTVKETQLPRIQ 575
           Y +KETQLPRIQ
Sbjct: 230 YRLKETQLPRIQ 241

[176][TOP]
>UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia
           guilliermondii RepID=A5DHL4_PICGU
          Length = 179

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 47/103 (45%), Positives = 67/103 (65%)
 Frame = +3

Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446
           ++V F +EA VG+KTM+ +   ++ +N    I + Q S+TP A   V  +A    +E FQ
Sbjct: 42  LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLVPTVAPA-SIETFQ 100

Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           E++L+VNI  H LVP+H  L+  EKK LL RY +KE+QLPRIQ
Sbjct: 101 ESDLIVNITHHDLVPKHIKLSIGEKKELLARYRLKESQLPRIQ 143

[177][TOP]
>UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium
           yoelii yoelii RepID=Q7RKX0_PLAYO
          Length = 112

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
 Frame = +3

Query: 312 MKTY--TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVL 485
           MK Y  T +M+ +++ RAILV Q +LTPFA+  + E A +  +E F + ELLVNI +H L
Sbjct: 1   MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHEL 60

Query: 486 VPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           VP+H  L   EK+ LL+RY +KE +LPRIQ
Sbjct: 61  VPKHIPLTSDEKRNLLQRYKIKENKLPRIQ 90

[178][TOP]
>UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi
           RepID=Q4XTK3_PLACH
          Length = 126

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
 Frame = +3

Query: 312 MKTY--TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVL 485
           MK Y  T +M+ +++ RAILV Q +LTPFA+  + E A +  +E F + ELLVNI +H L
Sbjct: 1   MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHEL 60

Query: 486 VPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           VP+H  L   EK+ LL+RY +KE +LPRIQ
Sbjct: 61  VPKHIPLTSDEKRNLLQRYKIKENKLPRIQ 90

[179][TOP]
>UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus
           RepID=Q6MY78_ASPFU
          Length = 220

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 8/175 (4%)
 Frame = +3

Query: 75  SEEEITKLYRIRKTVMQMLKDR------NYLVGDFELNMTKHEFKDKYGENMKREDLVIN 236
           ++ E+T+L+R  +TV +ML DR       + +  +     K   +       K   L   
Sbjct: 11  ADREMTRLWRTWRTVFEMLADRPRSTRLTHFLQPYSRTKMKISARPTAAMQAKYTPLPTP 70

Query: 237 KTKKDKPS-DQIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
                +P    IYV F  +   VG K ++ + + ++  N    + + QT ++P A   +S
Sbjct: 71  ANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLS 130

Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            I  +   E FQE +LLVNI  H LVP+H +L+  EKK LL+RY +KE+QLPRIQ
Sbjct: 131 GIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQ 184

[180][TOP]
>UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H038_CHAGB
          Length = 220

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
 Frame = +3

Query: 81  EEITKL-YRIRKTVMQMLKDR---NYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248
           +E+T+L Y + +  +++  DR    Y   D   N +K +F  +  E+M ++         
Sbjct: 12  KEVTRLDYELAEDEVKISLDRFRLEYTNDDGSPNRSKMQFSARPSESMIKKFTPPPTPSN 71

Query: 249 DKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI 416
             P+ +   I+V F PE+A +G+  MK +     + N    ILV   +L+  AR  ++  
Sbjct: 72  PDPAPECGTIWVEFCPEKASIGINVMKKFVEHCGTNNFKAGILVTAVALSAQARKVMTVT 131

Query: 417 ASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           +    +E F E +LLVNI  H LVP+H +L+  EK  LL+RY +KETQLPRI
Sbjct: 132 SQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKRYRLKETQLPRI 183

[181][TOP]
>UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
           VaMs.102 RepID=C9S900_9PEZI
          Length = 231

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 22/187 (11%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVIN----- 236
           +E+ + +R  +TV +M  DR Y + + E+ ++   F+ +Y     ++ R  L  +     
Sbjct: 9   KEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSARPSS 68

Query: 237 -------------KTKKDKPSDQIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ 374
                            D     IY+ F  E+  +GV+ ++ +   +   +    I+V  
Sbjct: 69  DMLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAGIMVTS 128

Query: 375 TSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKE 554
           + LT   R  +  + S   +E F E +LLVNI  H LVP+H +L+  EK  LL+RY +KE
Sbjct: 129 SPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKRYRLKE 188

Query: 555 TQLPRIQ 575
           TQLPRI+
Sbjct: 189 TQLPRIK 195

[182][TOP]
>UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb03 RepID=C0S407_PARBP
          Length = 171

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
 Frame = +3

Query: 267 IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           IYV F  + + VG K ++ + + ++ +N    I + QT ++P A   ++ I  +F  E F
Sbjct: 33  IYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRF-CEHF 91

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           QE ELLVNI  H LVP+H +L+  EKK LL+RY +KE+QLPRIQ
Sbjct: 92  QEQELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQLPRIQ 135

[183][TOP]
>UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide E, partial n=1 Tax=Hydra magnipapillata
           RepID=UPI0001925DCF
          Length = 187

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
 Frame = +3

Query: 99  YRIRKTVMQ--MLKDRNYLVG-DFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQI 269
           Y + K V++  + KD  + +  D E N+ K     ++  + K  D +I     D    Q+
Sbjct: 2   YVLYKLVLEWNIAKDIEWNIAKDIEWNIAKDI---EWNIDKKNHDKLIKLF--DSTKYQM 56

Query: 270 YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQE 449
           +VFFPEE KVG+KT+K Y  RM  E + RAI+V QT +TP A+                 
Sbjct: 57  FVFFPEEEKVGIKTIKQYCTRMQEEGINRAIIVVQTGMTPSAKQ---------------- 100

Query: 450 AELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
                      LVPEH VL+  EK  LL RY +K+ QLPRIQ
Sbjct: 101 -----------LVPEHVVLSPEEKAELLTRYKLKDHQLPRIQ 131

[184][TOP]
>UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE
          Length = 176

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 5/166 (3%)
 Frame = +3

Query: 93  KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG-----ENMKREDLVINKTKKDKP 257
           +L+R+R T+ Q+ +DR Y V   +L +T+  F +++G     E  +R DL     +   P
Sbjct: 13  RLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSDLDFVVQRASDP 72

Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
           +DQ+ V+F  + KVG+  ++ +                                      
Sbjct: 73  TDQLGVYFANDPKVGIAVVRDF-------------------------------------- 94

Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
            F+E EL+VN+ +H LVP+H +    EK  LLERY +KE QLPRI+
Sbjct: 95  -FEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIK 139

[185][TOP]
>UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23
           kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
           RepID=B4DJ89_HUMAN
          Length = 117

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 40/81 (49%), Positives = 54/81 (66%)
 Frame = +3

Query: 333 MNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLND 512
           M  EN+ RA++V Q  +TP A+  + ++A K+ LE F + ELL+NI EH LVPEH V+  
Sbjct: 1   MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60

Query: 513 TEKKTLLERYTVKETQLPRIQ 575
            E   LL RY ++E QLPRIQ
Sbjct: 61  EEVTELLARYKLRENQLPRIQ 81

[186][TOP]
>UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi
           RepID=Q8T1Q5_TRYCR
          Length = 219

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 11/171 (6%)
 Frame = +3

Query: 93  KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQI- 269
           K++R+ +TV +M+ DR Y V D  +  +  EFKD Y +   RE  VI + +   P ++I 
Sbjct: 17  KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREG-VIYRDRMTVPCERIG 73

Query: 270 -------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK- 425
                   VFF E   + ++TMK Y  + +  N  R I+V Q  +    +  V +I    
Sbjct: 74  VSQRSRAMVFFSEG--LSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSS 131

Query: 426 --FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
               +++F E +L+VNI  H LVP+H  L D E K +L+ + ++ + LPRI
Sbjct: 132 LGLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRI 182

[187][TOP]
>UniRef100_B5LZ31 RNA polymerase II (Fragment) n=1 Tax=Psetta maxima
           RepID=B5LZ31_PSEMX
          Length = 87

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
 Frame = +3

Query: 162 ELNMTKHEFKDKYGENM-----KREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYT 326
           EL+ T  EFK ++G+       +R DL +     D P+DQ++VFFPEE KVG+KT+K Y 
Sbjct: 3   ELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYC 62

Query: 327 NRMNSENVFRAILVCQTSLTPFAR 398
            RM  EN+ RAI+V Q  +TP A+
Sbjct: 63  QRMQEENITRAIIVVQMGMTPSAK 86

[188][TOP]
>UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus
           RepID=B0XMP1_ASPFC
          Length = 171

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
 Frame = +3

Query: 267 IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           IYV F  +   VG K ++ + + ++  N    + + QT ++P A   +S I  +   E F
Sbjct: 33  IYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRI-CEHF 91

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           QE +LLVNI  H LVP+H +L+  EKK LL+RY +KE+QLPRIQ
Sbjct: 92  QEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQ 135

[189][TOP]
>UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357
           RepID=B8N6W2_ASPFN
          Length = 171

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
 Frame = +3

Query: 267 IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           IYV F P+   VG K ++ + + ++  N    + + QT ++P A   +S +  +   E F
Sbjct: 33  IYVEFCPDSTGVGTKQVRAFNHVVDENNFHTGVFITQTPISPSAVRLLSGVPGRI-CEHF 91

Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           QE +LLVNI  H LVP+H +L+  EK  LL RY +KE+QLPRIQ
Sbjct: 92  QEQDLLVNITRHELVPKHVLLSPEEKAKLLARYRLKESQLPRIQ 135

[190][TOP]
>UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
           RepID=B6SJT2_MAIZE
          Length = 154

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 48/141 (34%), Positives = 72/141 (51%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
           E  +L+  R+T ++ML DR Y V + EL  T  EF+       + E L    T    PS 
Sbjct: 9   ESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSDPSS 68

Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
           ++ V F     V +  ++     +  EN+ R IL+ Q  +    R  + EI  +F ++ F
Sbjct: 69  KVKVVFCPPGPVKIAAIRLIYTEVKDENLARLILILQGKIMSPTRESIKEI-FRFKVDTF 127

Query: 444 QEAELLVNIKEHVLVPEHQVL 506
           Q  ELLVNI +HVL P+H+VL
Sbjct: 128 QITELLVNITKHVLKPKHEVL 148

[191][TOP]
>UniRef100_B4GWF6 GL16452 n=1 Tax=Drosophila persimilis RepID=B4GWF6_DROPE
          Length = 126

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
           E EI KL+ IRKTV +M  DR YLV   EL+ T  +F + +G+        R DL +  T
Sbjct: 8   EAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMVLT 67

Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRM 335
             D P +++ VFFPEE KV V+T+K + NRM
Sbjct: 68  HADDPKNRMLVFFPEEPKVAVRTIKAFANRM 98

[192][TOP]
>UniRef100_UPI0000163400 DNA binding / DNA-directed RNA polymerase n=1 Tax=Arabidopsis
           thaliana RepID=UPI0000163400
          Length = 87

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
 Frame = +3

Query: 312 MKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK---FHLEVFQEAELLVNIKEHV 482
           MK Y +++ S NVFRAILV Q  +  F+R  +  + +    FH+EVFQE EL+VN+KEHV
Sbjct: 1   MKKYIDQLKSANVFRAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59

Query: 483 LVPEHQVLNDTEKKTLLER 539
            VPEHQ L   EK+  LER
Sbjct: 60  FVPEHQALTTEEKQKFLER 78

[193][TOP]
>UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
           RepID=B6QBA8_PENMQ
          Length = 172

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
 Frame = +3

Query: 246 KDKPSD--------QIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398
           K +P+D        QI+V F E+   VG K ++ + + ++  N    I + +T+++P A 
Sbjct: 19  KKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITRTAISPSAV 78

Query: 399 TCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             ++        E FQE++LLVNI  H LVP+H +L+  EK  LLERY +KE+QLPRIQ
Sbjct: 79  RLLNSAIGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRLKESQLPRIQ 136

[194][TOP]
>UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1
           Tax=Trypanosoma brucei RepID=Q388R5_9TRYP
          Length = 219

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
 Frame = +3

Query: 78  EEEIT--KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKD 251
           +EE+   +++R+ +TV +M++DR Y V    +  T  +F ++Y   + RE   I + +  
Sbjct: 10  QEELVYDRMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGRRIYRERMT 66

Query: 252 KPSDQI--------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFART-- 401
            P +++         VFF  E  +G++ MK Y       N  R I+V    +    +   
Sbjct: 67  VPCERVGGTHRSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYV 124

Query: 402 -CVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
            C++   +   +++F E +L+VNI  H LVP+H  L D E K +LE ++++   LPRI
Sbjct: 125 DCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRI 182

[195][TOP]
>UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2
           Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG
          Length = 219

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
 Frame = +3

Query: 78  EEEIT--KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKD 251
           +EE+   +++R+ +TV +M++DR Y V    +  T  +F ++Y   + RE   I + +  
Sbjct: 10  QEELVYDRMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGKRIYRERMT 66

Query: 252 KPSDQI--------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFART-- 401
            P +++         VFF  E  +G++ MK Y       N  R I+V    +    +   
Sbjct: 67  VPCERVGGTHRSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYV 124

Query: 402 -CVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
            C++   +   +++F E +L+VNI  H LVP+H  L D E K +LE ++++   LPRI
Sbjct: 125 DCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRI 182

[196][TOP]
>UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE
          Length = 224

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 19/181 (10%)
 Frame = +3

Query: 87  ITKLYRIRKTVMQMLKDRNYLVGDFELN---MTKHE----FKDKYGENMKREDLVINKTK 245
           I K Y++ +T+  M++ R Y    FE N   + + E    F+ KY  ++  + +V  K K
Sbjct: 14  IKKKYKVFQTLASMIRQRGY----FEANPPILIEDEPFELFEAKYRTDVLPQRVVCFK-K 68

Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA---------- 395
           +D+    +  F+ ++  +     K Y + +++  V R I+V  T   PFA          
Sbjct: 69  EDETDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTD--PFATKPQVVEKKA 126

Query: 396 RTCVSEIAS--KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPR 569
           R  + ++ S   +  E+F E +L+ ++ +H LVP+H +LND EK+ LL++Y + + QLPR
Sbjct: 127 RFFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPR 186

Query: 570 I 572
           I
Sbjct: 187 I 187

[197][TOP]
>UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
           RepID=C4VBP1_NOSCE
          Length = 204

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
 Frame = +3

Query: 81  EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK-KDKP 257
           E+  K +  R T+++M  +R Y      L+       D +       D  +N      K 
Sbjct: 3   EKKRKFFLCRNTLVEMCTERGYTTDQKVLSY------DNFIAQFPSCDKDVNSINFVCKN 56

Query: 258 SDQIY-VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
           +D +  + F ++ K+G  +++       S N++  ILV    ++  ++  V+   S   +
Sbjct: 57  ADNLVGIHFIDDEKIGKSSIEKVIETYKSINIYHLILVINQKMSSASQNIVN--VSDLKI 114

Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           E+F++ EL+ NI +HV VP H++LNDTEK ++LE+  +   Q+P+I
Sbjct: 115 EIFKDEELMFNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKI 160

[198][TOP]
>UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE
          Length = 223

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 29/189 (15%)
 Frame = +3

Query: 93  KLYRIRKTVMQMLKDRNY-------LVGD--FELNMTKHEFKDKYGENMKREDLVINKTK 245
           K Y+I +T+  M++ R Y       LV D  FE+      F+ KY +N+  + +     K
Sbjct: 16  KKYKIFQTLASMIRQRGYFESTPAKLVEDETFEI------FESKYRDNLPEKIVCF---K 66

Query: 246 KDKPSDQIYVFF--------PEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA-- 395
           +D  SD++ + F         EEAK   KT++ ++NR     V R I++  T   PFA  
Sbjct: 67  RDDESDKLLIIFYTKQAPLTHEEAK---KTIQDFSNRQ----VKRLIMIFPTD--PFATK 117

Query: 396 --------RTCVSEIAS--KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
                   R  + ++ S   +  E+F E +L+ ++ +H LVP+H +LND EK+ LL++Y 
Sbjct: 118 PQVVDKKARLFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYG 177

Query: 546 VKETQLPRI 572
           + + QLPRI
Sbjct: 178 LVDNQLPRI 186

[199][TOP]
>UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans
           RepID=Q3LW39_BIGNA
          Length = 204

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 7/170 (4%)
 Frame = +3

Query: 87  ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK--REDLVINKTKKDKPS 260
           + K Y ++    +ML  R Y V    LN+   +FK K  E  +  +   +IN    +  +
Sbjct: 6   LEKYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEKKRYFKSFKIINHL--NDTN 63

Query: 261 DQIYVFFPEEAKV-----GVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
           ++I  F+  +  +     G+K  K  TN  NS      I + +  L+      +S     
Sbjct: 64  NKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNS-----IIFITKRYLSKQTNIALSHFRRN 118

Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
           F++E+F E E+L+N  +H LVP+H +L    K+ +L+ Y VK++QLP+I+
Sbjct: 119 FNIEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIK 168

[200][TOP]
>UniRef100_Q4YN15 DNA-directed RNA polymerase 2, putative (Fragment) n=1
           Tax=Plasmodium berghei RepID=Q4YN15_PLABE
          Length = 107

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
           E+ +T+ Y+ RKT  +ML+DR Y++   E       FK+ + EN K R  + I  + K+ 
Sbjct: 2   EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61

Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTP 389
            +++I V+F +E K  GVK ++  T +M+ +++ RAILV Q +LTP
Sbjct: 62  ANNKIIVYFVDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTP 107

[201][TOP]
>UniRef100_Q8CI23 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Mus
           musculus RepID=Q8CI23_MOUSE
          Length = 96

 Score = 68.9 bits (167), Expect = 3e-10
 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-----NMKREDLVINKT 242
           EEE  +L++IRKT+MQ+  DR YLV   EL+ T  EFK ++G+       +R DL +   
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 243 KKDKPSDQIYVFFPEEA 293
             D P+DQ++VFFP EA
Sbjct: 64  HNDDPTDQMFVFFPGEA 80

[202][TOP]
>UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5B0H1_VITVI
          Length = 162

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 36/103 (34%), Positives = 59/103 (57%)
 Frame = +3

Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446
           I V F    ++    ++    ++N E + R ILV Q+ +   AR  V E   K  +E FQ
Sbjct: 26  ILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFFQ 83

Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
             ELL+NI +HV VP+H++L+  EK+ L+ +Y +++ Q P +Q
Sbjct: 84  ITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQ 126

[203][TOP]
>UniRef100_UPI0001B7AB22 UPI0001B7AB22 related cluster n=1 Tax=Rattus norvegicus
           RepID=UPI0001B7AB22
          Length = 79

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
 Frame = +3

Query: 78  EEEITKLYRIRKTVMQ--MLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVIN 236
           EEE  +L++IRKT+MQ  +  DR YLV   EL+ T  EFK ++G+       +R DL + 
Sbjct: 4   EEETYRLWKIRKTIMQATLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 63

Query: 237 KTKKDKPSDQIYVFFP 284
               D P+DQ++VFFP
Sbjct: 64  VAHNDDPTDQMFVFFP 79

[204][TOP]
>UniRef100_Q8SRJ3 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
           RepID=Q8SRJ3_ENCCU
          Length = 212

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 1/164 (0%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-KREDLVINKTKKDKPS 260
           E+  L   R T ++M++DR Y      L +    F ++Y   + KR  L       D+P 
Sbjct: 14  ELRALCLSRNTAIEMVRDRGYTTTQEVLALDG--FHERYPLALTKRSTLNFVCVNVDRP- 70

Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
             + V F ++ K+G K  +   ++   +N+F  IL+     +P   + +  +  +F +E+
Sbjct: 71  --VAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIP-LTPRFSIEI 127

Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           F   EL+ N  +H  VP H+VL+  E++++     +    LPRI
Sbjct: 128 FLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRI 171

[205][TOP]
>UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
           infantum RepID=A4HXV2_LEIIN
          Length = 239

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 30/193 (15%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215
           E  K +RI +T  +M+ DR Y V    +  +  EF ++Y E ++                
Sbjct: 10  EFHKCFRILQTSAEMMSDRKYKVAQHVVPSSLGEFIERYVEEVEVTEDGGAAVGGGPNDA 69

Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
             R   VI + K     ++           V+F     +  + +K       +E   R +
Sbjct: 70  PPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRVV 129

Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533
            V  +   P  R  +   +        E+F+E EL VNI  H LVP+H  L++ E   +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHSPLSEEELTDVL 189

Query: 534 ERYTVKETQLPRI 572
           + + ++  QLPRI
Sbjct: 190 QAHALELNQLPRI 202

[206][TOP]
>UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
           braziliensis RepID=A4H9I9_LEIBR
          Length = 239

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 30/193 (15%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215
           E  K +RI +T  +M+ DR Y V    +  +  EF ++Y E ++                
Sbjct: 10  EFYKCFRILQTSAEMMSDRKYKVAQHVVPNSLGEFVERYVEEVEVTESGGAAAGGGFTDA 69

Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
             R   VI + K     ++           V+F     +  + +K        E   R +
Sbjct: 70  PPRRKQVIRRDKMTLACEREVGEGRTLKAVVYFCPPNHLSSEVVKKIAEDALHEGYQRVV 129

Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533
            V  +   P  R  +   +        E+F+E EL VNI  H LVP+H  L++ E K +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVL 189

Query: 534 ERYTVKETQLPRI 572
             + ++  QLPRI
Sbjct: 190 HAHALELHQLPRI 202

[207][TOP]
>UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major
           RepID=Q4QDW4_LEIMA
          Length = 239

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 30/193 (15%)
 Frame = +3

Query: 84  EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215
           E  K +RI +T  +M+ DR Y V    +  +  EF ++Y E ++                
Sbjct: 10  EFHKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDA 69

Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
             R   VI + K     ++           V+F     +  + +K       +E   R +
Sbjct: 70  LPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIV 129

Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533
            V  +   P  R  +   +        E+F+E EL VNI  H LVP+H  L++ E + +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVL 189

Query: 534 ERYTVKETQLPRI 572
             + ++  QLPRI
Sbjct: 190 HAHALELNQLPRI 202

[208][TOP]
>UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1
           Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH
          Length = 202

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
 Frame = +3

Query: 87  ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKH--EFKDKYGENMKREDLVINKTKKDKPS 260
           +  L+  R T+++ML DR Y+   FE ++     +FK+ +      +    N T     +
Sbjct: 6   VRDLWLARNTIIEMLTDRGYI---FEQSIFSQLEDFKNTFN---LEDSTSCNFTAIRNVN 59

Query: 261 DQIY---VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
           D++    + F    K+  K ++T     +++++ + IL+    L   A   + +  S F 
Sbjct: 60  DKVILCAIHFTSNDKLSKKQIETIITDYSNQSISKLILISCNKLNHAALAYLDK--SNFS 117

Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
           +E+F   ++L N  +H+LVP H++++  EK TLL         LP I
Sbjct: 118 IELFLYKDILFNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPII 164