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[1][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXZ4_SOYBN
Length = 206
Score = 298 bits (764), Expect = 2e-79
Identities = 147/170 (86%), Positives = 159/170 (93%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
MV SEEEI +LYRIRKTVMQML+DRN+LVGDFE+NM+KHEFK KYGE+MKREDLVINK+K
Sbjct: 1 MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
KD DQIYVFFP+E KVGVKTMKTYTNRMNSENV+RAILV QT+LTPFARTC+SEI+SK
Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
FHLEVFQEAELLVNIKEH LVPEHQVL D EKKTLLERYTVKETQLPRIQ
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQ 170
[2][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SVA4_SOYBN
Length = 206
Score = 295 bits (755), Expect = 2e-78
Identities = 145/170 (85%), Positives = 158/170 (92%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
MV SEEE+ +LYRIRKTVMQML+DR +LVGDFE+NM+KHEFK KYGE+MKREDLVINK+K
Sbjct: 1 MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
KD DQIYVFFP+E KVGVKTMKTYTNRMNSENV+RAILV QT+LTPFARTC+SEI+SK
Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
FHLEVFQEAELLVNIKEH LVPEHQVL D EKKTLLERYTVKETQLPRIQ
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQ 170
[3][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PEL2_VITVI
Length = 206
Score = 284 bits (726), Expect = 4e-75
Identities = 141/170 (82%), Positives = 153/170 (90%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
M SEEEI++L+RIRKTVMQMLKDR Y VGDFE+NMTKH+F K+GENMKREDLVINK K
Sbjct: 1 MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
+ SDQIYVFFPEE KVGVKTMKTYTNRM SENVFRAILV Q +LTPFARTC++EI++K
Sbjct: 61 RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
FHLEVFQEAELLVNIKEHVLVPEHQVL EKKTLLERYTVKETQLPRIQ
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQ 170
[4][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
Length = 206
Score = 281 bits (720), Expect = 2e-74
Identities = 139/170 (81%), Positives = 154/170 (90%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
M +EEEI +L RIRKTVMQMLKDR Y VGDFE+ MT+ +F+ KYG NMKREDLVINKTK
Sbjct: 1 MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
++ SDQIYVFFPEEAKVGVKTMKTYTNRM SENVFRAILV Q +LTPFARTC++EI++K
Sbjct: 61 RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
FHLEVFQEAELLVNIKEHVLVPEHQVL++ EKKTLLERYTVKETQLPRIQ
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQ 170
[5][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RKM1_RICCO
Length = 225
Score = 266 bits (680), Expect = 8e-70
Identities = 138/189 (73%), Positives = 153/189 (80%), Gaps = 19/189 (10%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
M SE+EI +L+RIR+TVMQMLKDR YLV D E+N+TKH+F KYG+NMKREDLVI+K+K
Sbjct: 1 MTLSEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSK 60
Query: 246 KDK-------------------PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
+D P QIYVFFPEE KVGVKTMKTYTNRM SENVFRAILV
Sbjct: 61 RDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILV 120
Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
Q SLTPFARTC++EIASKFHLEVFQE+ELLVNIKEHVLVPEHQVL + EKKTLLERYTV
Sbjct: 121 VQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTV 180
Query: 549 KETQLPRIQ 575
KETQLPRIQ
Sbjct: 181 KETQLPRIQ 189
[6][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
thaliana RepID=O81098_ARATH
Length = 205
Score = 259 bits (662), Expect = 1e-67
Identities = 127/169 (75%), Positives = 147/169 (86%)
Frame = +3
Query: 69 VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248
+ +EEE+ +LYRI+KT+MQML+DR Y + D EL MTK +F K+G+NMKREDLV K K+
Sbjct: 1 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60
Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428
+ SDQ+Y+FFP+EAKVGVKTMK YTNRM SENVFRAILV Q +LTPFARTC+SEI+SKF
Sbjct: 61 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120
Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
HLEVFQEAE+LVNIKEHVLVPEHQVL EKKTLLERYTVKETQLPRIQ
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQ 169
[7][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RKG6_PHYPA
Length = 208
Score = 241 bits (616), Expect = 2e-62
Identities = 116/166 (69%), Positives = 144/166 (86%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
+E+ +LYRIRKTVM+ML+DR+Y+V +FELN TK EF++KYG+ KREDLVI K K+
Sbjct: 7 DEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNN 66
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
++ I+VFFPEEAKVGVKT+KTY +RM +ENV RAILV Q +LTPFAR CVSE++SK+H+E
Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVE 126
Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
VFQEAELLVNIK+HVLVP+H+VLN EK TLL+RYTVKETQLPR+Q
Sbjct: 127 VFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQRYTVKETQLPRMQ 172
[8][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWG5_PHYPA
Length = 208
Score = 240 bits (613), Expect = 5e-62
Identities = 116/166 (69%), Positives = 143/166 (86%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
+E+ +LYRIRKTVM+ML+DR+Y+V D+EL ++K +F++KYG+ KREDLVI K ++
Sbjct: 7 DEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNN 66
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
++ I+VFFPEEAKVGVKT+KTY +RM +ENV RAILV Q +LTPFAR CVSE+ASK+HLE
Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLE 126
Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
VFQEAELLVNIKEHVLVP H+VL EKKTLLERYTVKETQLPR+Q
Sbjct: 127 VFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTVKETQLPRMQ 172
[9][TOP]
>UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=A9NTD1_PICSI
Length = 191
Score = 238 bits (608), Expect = 2e-61
Identities = 116/162 (71%), Positives = 138/162 (85%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
+E+ KL+RIR+TV+QML DR+YLVGDFE+N TK +F DK+GE+ K+EDLVINK K++ P
Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
S+QI+VFFPEEAKVGVK++KTY RM SE VFRAILV Q +LTPFAR V E + KFHLE
Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLE 123
Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563
VFQEAELLVNIKEHVLVPE Q+L EKKTLLERYT+KETQ+
Sbjct: 124 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQV 165
[10][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
guineensis RepID=B3TLL2_ELAGV
Length = 204
Score = 235 bits (599), Expect = 2e-60
Identities = 115/167 (68%), Positives = 140/167 (83%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
SE++I++L+RIR+TVMQML+DR YLV D E+NM K +F +K+GE +KREDLVINK KK+
Sbjct: 2 SEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKND 61
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
P+DQIYVFFP +AKVGVK +K Y RM +ENV R ILV Q +LTPFAR ++E++ K+ L
Sbjct: 62 PADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYML 121
Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
EVFQ+ ELLVNIKEHVLVPEHQVL EKKTLLERYT+KETQLPRIQ
Sbjct: 122 EVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQ 168
[11][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LR68_PICSI
Length = 194
Score = 225 bits (574), Expect = 2e-57
Identities = 113/166 (68%), Positives = 134/166 (80%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
+E+ KL+RIR+TV+QML DR+YLVGDFE+N TK +F DK+GE+ K+EDLVINK K++ P
Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
S+QI+VFFPEEAKVGVK++KTY RM SE VFRAILV Q E + KFHLE
Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQ-----------QEFSGKFHLE 112
Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
VFQEAELLVNIKEHVLVPE Q+L EKKTLLERYT+KETQLPR+Q
Sbjct: 113 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQLPRMQ 158
[12][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
Length = 210
Score = 222 bits (565), Expect = 2e-56
Identities = 111/170 (65%), Positives = 135/170 (79%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
+V E + +L RIR+TVMQML+DR YLV + EL M + +F KYGE+ REDL+INK K
Sbjct: 5 LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
K+ PSDQIYVFFP + KVG+K +K Y M +ENV RA+LV Q +LTPFAR+ + E+ K
Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPK 124
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
HLE+FQEAELL+NIKEHVLVPEHQVLN+ EKKTLLERYT+KETQLPRIQ
Sbjct: 125 IHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQ 174
[13][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9ETS9_ORYSJ
Length = 210
Score = 221 bits (564), Expect = 2e-56
Identities = 111/170 (65%), Positives = 135/170 (79%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
+V E + +L RIR+TVMQML+DR YLV + EL M + +F KYGE+ REDL+INK K
Sbjct: 5 LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
K+ PSDQIYVFFP + KVG+K +K Y M +ENV RA+LV Q +LTPFAR+ + E+ K
Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPK 124
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
HLE+FQEAELL+NIKEHVLVPEHQVLN+ EKKTLLERYT+KETQLPRIQ
Sbjct: 125 IHLEIFQEAELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQ 174
[14][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
RepID=B4FU06_MAIZE
Length = 210
Score = 219 bits (557), Expect = 2e-55
Identities = 108/170 (63%), Positives = 134/170 (78%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
+V E + +LYRIR+TVMQML+DR YLV D EL ++ +F K+GE+ REDL+INK K
Sbjct: 5 LVTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYK 64
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
K+ PSDQIYVFFP + KVG+K +K Y M ENV RA+LV Q +LTPFA++ + E+ K
Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPK 124
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
HLE+FQEAE+L+NIKEHVLVPEHQVL + EKKTLLERYT+KETQLPRIQ
Sbjct: 125 IHLEIFQEAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQ 174
[15][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FGM1_MAIZE
Length = 206
Score = 211 bits (538), Expect = 2e-53
Identities = 101/170 (59%), Positives = 134/170 (78%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
M ++EI++L+RIR+TV +ML+DR Y V D ++ + +H+F ++YG ++R++L N TK
Sbjct: 1 MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
+ PSDQIYVFFP EAK GVKT++ Y +M +ENVF ILV Q +L+ FAR+ V E++ K
Sbjct: 61 LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+HLEVFQEAELLVNIK+HVLVPEH +L +KKTLLERYTVKETQLPRIQ
Sbjct: 121 YHLEVFQEAELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLPRIQ 170
[16][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XUF8_ORYSJ
Length = 205
Score = 210 bits (535), Expect = 5e-53
Identities = 100/167 (59%), Positives = 135/167 (80%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F ++G+ + R+ LV ++ KKD
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
+DQIYVFFP++AK GVKT+++Y RM E+VF ILV Q +L+ FAR+ V E++ KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
EVFQEAELLVNIK+H LVPEH++L +KKTLLERYTVKETQLPRIQ
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQLPRIQ 169
[17][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
RepID=A3AV22_ORYSJ
Length = 217
Score = 201 bits (512), Expect = 3e-50
Identities = 95/163 (58%), Positives = 131/163 (80%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F ++G+ + R+ LV ++ KKD
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
+DQIYVFFP++AK GVKT+++Y RM E+VF ILV Q +L+ FAR+ V E++ KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563
EVFQEAELLVNIK+H LVPEH++L +KKTLLERYTVKETQ+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQI 165
[18][TOP]
>UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=B7EQI7_ORYSJ
Length = 167
Score = 201 bits (511), Expect = 3e-50
Identities = 95/163 (58%), Positives = 131/163 (80%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F ++G+ + R+ LV ++ KKD
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
+DQIYVFFP++AK GVKT+++Y RM E+VF ILV Q +L+ FAR+ V E++ KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563
EVFQEAELLVNIK+H LVPEH++L +KKTLLERYTVKETQ+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQV 165
[19][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MXV4_9CHLO
Length = 206
Score = 195 bits (495), Expect = 2e-48
Identities = 100/168 (59%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
S E++TKL+RI KTV +ML R YLV EL K F++ YG++ KRE L + ++D
Sbjct: 3 SSEKVTKLFRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDD 62
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK-FH 431
PS+ I+VFFPEE KVGVKT+K Y RM E+VFRAI+V Q SLTPFA+ + E AS+ F+
Sbjct: 63 PSENIFVFFPEEEKVGVKTIKEYAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFY 122
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E FQE ELLVNI EHVLVPEH +L+D EK+TLL RY VK+TQLPRIQ
Sbjct: 123 IEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLARYKVKDTQLPRIQ 170
[20][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
Length = 206
Score = 193 bits (490), Expect = 9e-48
Identities = 89/165 (53%), Positives = 126/165 (76%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260
+ +T+L+R+R+T +QML DR YLV E+ TK +F+D++GEN +++DL I ++D P+
Sbjct: 2 DNLTRLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPT 61
Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
+QI+VFFPEE KVGVKT+K RM E V RAI+V + TPFA++ + ++ K+H+E
Sbjct: 62 EQIFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEH 121
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
F E+ELLVNI EHVLVPEH++L+ EK+TLL+RY +KETQLPRIQ
Sbjct: 122 FLESELLVNITEHVLVPEHRILSPDEKRTLLDRYKIKETQLPRIQ 166
[21][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RWP8_OSTLU
Length = 205
Score = 182 bits (461), Expect = 2e-44
Identities = 94/168 (55%), Positives = 120/168 (71%), Gaps = 1/168 (0%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
S ++ T+L+R+RKT+ +ML R YLV EL F + +GE KRE L I K+D
Sbjct: 2 SNDKRTRLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDD 61
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFH 431
PS+ I+VFFP+E KVGVKT+K RM ENVFRAI+V Q SLTPFA+ + E KF+
Sbjct: 62 PSENIFVFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKFY 121
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E FQE ELLVNI +HVLVPEH +L+D +K+TLL+RY VK+TQLPRIQ
Sbjct: 122 IEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLDRYKVKDTQLPRIQ 169
[22][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
Length = 1124
Score = 181 bits (460), Expect = 3e-44
Identities = 93/168 (55%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
S + +L+R+RKT+ +ML R YLV EL F +++GE KR+ L I +KD
Sbjct: 921 SSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKDD 980
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFH 431
PS+ I+VFFP+E KVGVKT+K RM ENVFRAI+V Q SLTPFA+ + E KF+
Sbjct: 981 PSENIFVFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKFY 1040
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E FQE ELLVNI +HVLVPEH +L+D +K+TLLERY VK+TQLPRIQ
Sbjct: 1041 IEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLERYKVKDTQLPRIQ 1088
[23][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
Length = 204
Score = 180 bits (457), Expect = 6e-44
Identities = 93/166 (56%), Positives = 121/166 (72%), Gaps = 1/166 (0%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260
E+ T+L+RIRKTV +ML R YLV EL+ K F +++GE+ +R+ L + ++ P+
Sbjct: 3 EKKTRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPT 62
Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFHLE 437
I+VFFP+E KVGVKT+K Y RM E V RAI+V Q SLTPFAR + E A KF++E
Sbjct: 63 QHIFVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIE 122
Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
FQEAELLVNI +HVLVPEH +L+D +K+ LL+RY VKETQLPRIQ
Sbjct: 123 QFQEAELLVNITDHVLVPEHILLSDEQKRVLLDRYKVKETQLPRIQ 168
[24][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
intestinalis RepID=UPI000180C3C9
Length = 210
Score = 172 bits (436), Expect = 2e-41
Identities = 91/171 (53%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E +L+RIRKTVMQ+ DR YLV EL+ + EFK+++G+ R+DL I
Sbjct: 4 EAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVGVKT+KTY RM EN+ RAI+V Q S+TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQEENIQRAIIVVQQSMTPSAKQSLFDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E ELL+NI EH LVPEH VL EK LL RY +K+ QLPRIQ
Sbjct: 124 KYILEQFLEQELLINITEHELVPEHVVLTPEEKSELLTRYKLKDHQLPRIQ 174
[25][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186E78B
Length = 210
Score = 171 bits (434), Expect = 3e-41
Identities = 86/171 (50%), Positives = 118/171 (69%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP++ K+G+KT+KTY RM EN+ RAI+V Q +TP A+ +S++A
Sbjct: 64 HNDDPTDQMFVFFPDDPKIGIKTIKTYCQRMQEENIHRAIIVVQQGMTPSAKQSLSDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL+RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLQRYKLKENQLMRIQ 174
[26][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
vitripennis RepID=UPI00015B5456
Length = 210
Score = 168 bits (426), Expect = 2e-40
Identities = 86/171 (50%), Positives = 116/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP+E K+G+KT+KTY RM E + RAI+V Q+ +TP A+ + ++A
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH VL EK+ LL RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174
[27][TOP]
>UniRef100_UPI000051A7F2 PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
RepID=UPI000051A7F2
Length = 179
Score = 167 bits (424), Expect = 4e-40
Identities = 86/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP+E K+G+KT+KTY RM E + RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH VL EK+ LL RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174
[28][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
RepID=UPI00003C0CAC
Length = 210
Score = 167 bits (424), Expect = 4e-40
Identities = 86/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP+E K+G+KT+KTY RM E + RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH VL EK+ LL RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174
[29][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
Length = 210
Score = 167 bits (423), Expect = 5e-40
Identities = 86/171 (50%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKT+MQ+ DR YLV EL+ T +FKD +G+ R DL++
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQ 174
[30][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
RepID=A6N9W6_ORNPR
Length = 210
Score = 167 bits (423), Expect = 5e-40
Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKT+MQ+ DR YLV EL+ T +FK ++G+ R DL++
Sbjct: 4 EAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP+E K+G+KT+KTY RM EN+ RAI+V Q +TP A+ ++++A
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALTDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH VL EK LL RY +KE L RIQ
Sbjct: 124 KYILEYFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMRIQ 174
[31][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3ZQF0_BRAFL
Length = 210
Score = 166 bits (420), Expect = 1e-39
Identities = 85/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E+E KL+RIRKT+MQ+ DR YLV EL+ +FKD++G+ R+DLV+
Sbjct: 4 EQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFF +E K+G+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFADEPKIGIKTIKMYCQRMQEENISRAIIVVQMGMTPSAKQALVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ EK LL RY +KE QLPRIQ
Sbjct: 124 KYILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRLKEHQLPRIQ 174
[32][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
Length = 210
Score = 166 bits (420), Expect = 1e-39
Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSRYKLKENMLMRIQ 174
[33][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
Length = 210
Score = 166 bits (419), Expect = 2e-39
Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ
Sbjct: 124 KYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSRYKLKENMLMRIQ 174
[34][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
Length = 210
Score = 166 bits (419), Expect = 2e-39
Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQ 174
[35][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
RepID=B0X7A5_CULQU
Length = 210
Score = 166 bits (419), Expect = 2e-39
Identities = 84/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
+ E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++
Sbjct: 4 DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP+E K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQ 174
[36][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000587A08
Length = 210
Score = 165 bits (418), Expect = 2e-39
Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E +L+R+R+T+MQ+ DR YLV EL+ T +FK+++G+ R+DL +
Sbjct: 4 EAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+ Q +TP A+T + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F EAELL+NI EH VPEH V+ EK LL RY +K+ QLPRIQ
Sbjct: 124 KYILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKLKDHQLPRIQ 174
[37][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BIS3_OSMMO
Length = 210
Score = 165 bits (418), Expect = 2e-39
Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLTRYKLKESQLPRIQ 174
[38][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
RepID=Q5DDM1_SCHJA
Length = 206
Score = 165 bits (418), Expect = 2e-39
Identities = 83/170 (48%), Positives = 117/170 (68%), Gaps = 1/170 (0%)
Frame = +3
Query: 69 VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248
+ + E KL+RIRKT+++M KDR YLV EL + +FK G+ R+DL++ +
Sbjct: 1 MLDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHE 60
Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ-TSLTPFARTCVSEIASK 425
+ P+D +YVFFPEE KV +KT++ Y N+M ++ +RAILV Q LTP A+T ++E++ K
Sbjct: 61 EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCK 120
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+ LE F E EL+VNI EH LVP+H VL EKK LLERY +KE QLP++Q
Sbjct: 121 YTLECFFENELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQ 170
[39][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
Length = 210
Score = 165 bits (418), Expect = 2e-39
Identities = 87/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++
Sbjct: 4 ECESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE K+G+KT+KTY RM E + RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCQRMQEETITRAIIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH VL EK+ LL RY +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKQELLCRYKLKENQLMRIQ 174
[40][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
Length = 210
Score = 165 bits (417), Expect = 3e-39
Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQ 174
[41][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
Length = 210
Score = 165 bits (417), Expect = 3e-39
Identities = 85/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V++ E LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMSKEEVVELLARYKLKESQLPRIQ 174
[42][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
Length = 208
Score = 165 bits (417), Expect = 3e-39
Identities = 83/167 (49%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
+ E KL+RIRKT+++M KDR YLV EL + +FK G+ R+DL++ ++ P
Sbjct: 6 DSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDP 65
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ-TSLTPFARTCVSEIASKFHL 434
+D +YVFFPEE KV +KT++ Y N+M ++ +RAILV Q LTP A+T ++E++ K+ L
Sbjct: 66 ADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTL 125
Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
E F E EL+VNI EH LVP+H VL EKK LLERY +KE QLP++Q
Sbjct: 126 ECFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQ 172
[43][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
Length = 210
Score = 165 bits (417), Expect = 3e-39
Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ +K+ LL RY +KE L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQ 174
[44][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
Length = 210
Score = 165 bits (417), Expect = 3e-39
Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++
Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ +K+ LL RY +KE L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQ 174
[45][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
Length = 211
Score = 165 bits (417), Expect = 3e-39
Identities = 86/175 (49%), Positives = 115/175 (65%), Gaps = 5/175 (2%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230
M E E +L+RIRKTV+QM+ DR YLV EL+ FK +YG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60
Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
I D P+DQ++VFFPE+AK+G+KT+K +M +N+ RAI+V QT +TP A+ +
Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
++A K+ LE F EAEL+VNI EH LVPEH V+ EK LL RY +K++QLPRIQ
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQ 175
[46][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
rerio RepID=Q6DEG5_DANRE
Length = 210
Score = 164 bits (415), Expect = 4e-39
Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EF+ ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQ 174
[47][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
Length = 210
Score = 163 bits (413), Expect = 8e-39
Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQ 174
[48][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
Tax=Murinae RepID=RPAB1_MOUSE
Length = 210
Score = 163 bits (413), Expect = 8e-39
Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E+QLPRIQ
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQ 174
[49][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
isoform 1 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A3E0E
Length = 208
Score = 163 bits (412), Expect = 1e-38
Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174
[50][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
RepID=UPI000056951D
Length = 211
Score = 163 bits (412), Expect = 1e-38
Identities = 87/172 (50%), Positives = 115/172 (66%), Gaps = 6/172 (3%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKTVMQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFP-EEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA 419
D P+DQ++VFFP EE KVG+KT+K Y RM EN+ RA++V QT +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPVEELKVGIKTIKMYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMA 123
Query: 420 SKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KETQLPRIQ
Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKETQLPRIQ 175
[51][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
polymerases I, II, and III subunit ABC1) (DNA-directed
RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
lupus familiaris RepID=UPI0000EB19D6
Length = 212
Score = 163 bits (412), Expect = 1e-38
Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174
[52][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Esox lucius RepID=C1BZT4_ESOLU
Length = 210
Score = 163 bits (412), Expect = 1e-38
Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA +V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174
[53][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XGH1_CAEBR
Length = 211
Score = 163 bits (412), Expect = 1e-38
Identities = 84/175 (48%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230
M E E +L+RIRKTV+QM+ DR YLV EL+ FK+ +G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60
Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
I D P+DQ++VFFPE+ K+G+KT+K +M +N+ RAI+V QT +TP A+ +
Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
++A K+ LE F EAEL+VNI EH LVPEH V+ EK LL RY +K++QLPRIQ
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQ 175
[54][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D56A05
Length = 210
Score = 162 bits (411), Expect = 1e-38
Identities = 85/171 (49%), Positives = 112/171 (65%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+RIRKTVMQ+ DR YLV EL+ T +FK++ G+ R DL I
Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP+E K+G+K +KTY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTRYKLKENMLMRIQ 174
[55][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
Tax=Neognathae RepID=B5FX59_TAEGU
Length = 210
Score = 162 bits (411), Expect = 1e-38
Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174
[56][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
RepID=Q28HF5_XENTR
Length = 210
Score = 162 bits (411), Expect = 1e-38
Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQ 174
[57][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Salmo salar RepID=B5X8S7_SALSA
Length = 210
Score = 162 bits (411), Expect = 1e-38
Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA +V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174
[58][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
pseudonana CCMP1335 RepID=B8C1Q1_THAPS
Length = 226
Score = 162 bits (410), Expect = 2e-38
Identities = 84/164 (51%), Positives = 111/164 (67%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E ++L+R+ KTV ML R Y+V MT +F ++GE RE L I K D ++
Sbjct: 27 EASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETN 86
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
Q++VFFPE+ KVGVK +K T+RM ENV AILV + +TPFA+ V E++ F LE F
Sbjct: 87 QLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHF 146
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+EAELLV+I EH LVPEH VL+ EK+ LL+RY ++ETQLPRIQ
Sbjct: 147 KEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQLPRIQ 190
[59][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
Length = 278
Score = 162 bits (409), Expect = 2e-38
Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EE+ +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174
[60][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
RepID=C6K8L9_CAEBE
Length = 211
Score = 162 bits (409), Expect = 2e-38
Identities = 83/175 (47%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230
M E E +L+RIRKTV+QM+ DR YLV EL+ FK+ +G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLT 60
Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
I D P+DQ++VFFP++ K+G+KT+K +M +N+ RAI+V QT +TP A+ +
Sbjct: 61 ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
++A K+ LE F EAEL+VNI EH LVPEH V+ EK LL RY +K++QLPRIQ
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQ 175
[61][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Pongo abelii RepID=RPAB1_PONAB
Length = 210
Score = 162 bits (409), Expect = 2e-38
Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EF+ ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174
[62][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
Tax=Euteleostei RepID=B5X957_SALSA
Length = 210
Score = 161 bits (408), Expect = 3e-38
Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
+EE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA +V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174
[63][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus clemensi RepID=C1C1G9_9MAXI
Length = 210
Score = 161 bits (407), Expect = 4e-38
Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+++RKTVM + DR YLV EL+ T+ +FK ++G+ R DL I
Sbjct: 4 ESETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPE+ K+GVK ++TY RM EN+ RAI+V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEDPKIGVKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+N+ EH LVPEH V+ EKK LL++Y +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQ 174
[64][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Homo sapiens RepID=RPAB1_HUMAN
Length = 210
Score = 161 bits (407), Expect = 4e-38
Identities = 83/171 (48%), Positives = 112/171 (65%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK + G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174
[65][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Bos taurus RepID=RPAB1_BOVIN
Length = 210
Score = 159 bits (401), Expect = 2e-37
Identities = 82/171 (47%), Positives = 111/171 (64%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV L+ T EFK ++G +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174
[66][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
Length = 213
Score = 157 bits (397), Expect = 5e-37
Identities = 83/166 (50%), Positives = 113/166 (68%), Gaps = 5/166 (3%)
Frame = +3
Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRE----DLVINKTKKDKPS 260
+L+R+RKT+ ++L+DR YLV LN TK F ++ E +R+ DL+I +K+D PS
Sbjct: 12 RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71
Query: 261 DQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
DQ+ VFFP+E K VGVK ++T +M + + RAILV Q LT FA+T + E + + +E
Sbjct: 72 DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131
Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
VF E+EL+VNI H LVPEH+ L EK+ LLERY VKE QLPRIQ
Sbjct: 132 VFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLPRIQ 177
[67][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
Length = 213
Score = 157 bits (396), Expect = 7e-37
Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRE----DLVINKTK 245
++ +L+R+RKT+ ++L+DR Y+V LN TK F ++ E +R+ DL+I +K
Sbjct: 7 DDTTIRLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSK 66
Query: 246 KDKPSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
+D PSDQ+ VFFP+E K VGVK ++T +M + + RAILV Q LT FA+T + E +
Sbjct: 67 QDDPSDQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASP 126
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+ +EVF E+EL+VNI H LVPEH+ L EK+ LLERY VKE QLPRIQ
Sbjct: 127 QMEIEVFNESELVVNITHHELVPEHKPLTPEEKRLLLERYKVKENQLPRIQ 177
[68][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
Length = 210
Score = 156 bits (395), Expect = 9e-37
Identities = 79/171 (46%), Positives = 114/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E KL+++RKTVM + DR YLV EL+ T +FK ++G+ R DL I
Sbjct: 4 EAENYKLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP++ K+G+K ++TY RM EN+ RAI++ Q+ +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPDDPKIGIKHIRTYCKRMQEENITRAIILVQSGMTPSAKQSLMDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+ELL+N+ EH LVPEH V+ EKK LL++Y +KE QL RIQ
Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQ 174
[69][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7FSY0_PHATR
Length = 228
Score = 156 bits (394), Expect = 1e-36
Identities = 75/164 (45%), Positives = 112/164 (68%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+R+ +T+ ML R Y+V +T FK+++GE RE+L I K D ++
Sbjct: 29 EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
Q+++FFPE+ KVGVK +K YT+RM +E+V AI++ + +TPFA+ V E++ F +E F
Sbjct: 89 QLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHF 148
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E+ELLV+I +H LVP HQVL EK LL+RY +K++QLPRIQ
Sbjct: 149 KESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQ 192
[70][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5E0K0_DROPS
Length = 210
Score = 155 bits (393), Expect = 2e-36
Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
EEE+ K++RIRKTV+QM DR YLV EL+ T F++ +G+ R D+ +
Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFP+E KVG+K +K Y RM E+++RAI+V Q S+TP AR + E+A
Sbjct: 64 HNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F EAEL+ NI E+ VPEH V+ EK+ LL RY +KE+ L RIQ
Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLKESMLMRIQ 174
[71][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
Length = 210
Score = 155 bits (393), Expect = 2e-36
Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
EEE+ K++RIRKTV+QM DR YLV EL+ T F++ +G+ R D+ +
Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+K +K Y RM E+++RAI+V Q S+TP AR + E+A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F EAEL+ NI E+ VPEH V+ EK+ LL RY ++E+ L RIQ
Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLRESMLMRIQ 174
[72][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S3Q9_TRIAD
Length = 210
Score = 155 bits (391), Expect = 3e-36
Identities = 80/171 (46%), Positives = 111/171 (64%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK--- 248
EEE KL+RIRKTVMQM DR Y+V EL+ T +F +++ M V
Sbjct: 4 EEEAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVH 63
Query: 249 --DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P++Q++VFFP+E KVG+ T+K Y RM EN+ RAI++ Q+ +TP A+ + ++A
Sbjct: 64 HIDDPTEQLFVFFPDEPKVGINTIKKYCQRMQRENINRAIIIIQSGMTPTAKQSLIDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
K+ LE F E+EL++NI EH LVP+H V++ EK LL RY +KE QLPRIQ
Sbjct: 124 KYTLESFMESELMINITEHHLVPKHIVMSPEEKAELLARYKLKEHQLPRIQ 174
[73][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide E, 25kDa n=1 Tax=Pan troglodytes
RepID=UPI0000E24E5A
Length = 230
Score = 153 bits (386), Expect = 1e-35
Identities = 78/161 (48%), Positives = 105/161 (65%), Gaps = 5/161 (3%)
Frame = +3
Query: 108 RKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKKDKPSDQIY 272
RKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + D P+DQ++
Sbjct: 34 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 93
Query: 273 VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEA 452
VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A K+ LE F +
Sbjct: 94 VFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQ 153
Query: 453 ELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ
Sbjct: 154 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 194
[74][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
Length = 207
Score = 150 bits (379), Expect = 7e-35
Identities = 81/166 (48%), Positives = 110/166 (66%), Gaps = 5/166 (3%)
Frame = +3
Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKTKKDKP 257
K +RIRKTVMQ+ N L+ EL+ T +FK+++G+ R DL I D P
Sbjct: 9 KFWRIRKTVMQVC---NGLILRDELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDP 65
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A K+ LE
Sbjct: 66 TDQMFVFFPEEPKVGIKTIKQYCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILE 125
Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
F EAEL++NI EH LVPEH ++ EK+ LL RY +KE QLPRIQ
Sbjct: 126 QFVEAELMINITEHELVPEHVLMTPDEKQELLLRYKLKEHQLPRIQ 171
[75][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8NU15_COPC7
Length = 273
Score = 148 bits (373), Expect = 3e-34
Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKTKKD 251
+E +L+++ KT+ +++KDR + V D E+NM+ F+ YG NM R L +
Sbjct: 70 DETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRL 129
Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
PSDQI+V+F EE VGVK M+ M + + R I++ ++T AR +S +AS +
Sbjct: 130 NPSDQIFVYFTEEPNVGVKAMRKLLGIMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 189
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
LE F EA+LLVNI H LVP H+VL+ EKKTLLERY +K+TQLPRIQ
Sbjct: 190 LEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLERYRLKDTQLPRIQ 237
[76][TOP]
>UniRef100_UPI00005A3E0F PREDICTED: similar to DNA-directed RNA polymerase II 23 kDa
polypeptide (RPB25) (RPB5) (RPABC1) isoform 2 n=1
Tax=Canis lupus familiaris RepID=UPI00005A3E0F
Length = 162
Score = 146 bits (368), Expect = 1e-33
Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
K+ LE F + ELL+NI EH LVPEH V+ E LL R
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
[77][TOP]
>UniRef100_Q8R0H0 Polr2e protein n=1 Tax=Mus musculus RepID=Q8R0H0_MOUSE
Length = 162
Score = 146 bits (368), Expect = 1e-33
Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
K+ LE F + ELL+NI EH LVPEH V+ E LL R
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162
[78][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D9Y7_LACBS
Length = 208
Score = 146 bits (368), Expect = 1e-33
Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN---MKREDLVINKTKKD 251
+E KL+++ +T+ +++KDR +LV D E++M F+ Y N + R L T +
Sbjct: 5 DETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRT 64
Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+DQI+VFF EE VGVKTM+ + +++ R I+V ++TP AR + +A ++
Sbjct: 65 NSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYR 124
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
LE F EA+LLVNI H LVP H VL+ EKKTLLE+Y +KETQLPRIQ
Sbjct: 125 LEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEKYRLKETQLPRIQ 172
[79][TOP]
>UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1
Tax=Dictyostelium discoideum RepID=RPAB1_DICDI
Length = 197
Score = 144 bits (364), Expect = 4e-33
Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260
E+I +L +IRKTV+QML DR Y++ +E + F + RE+L + KKD P+
Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPT 54
Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA--SKFHL 434
D IYVFFP+ KVGV +K Y + M RAI+V Q ++TPFA+ ++E + K L
Sbjct: 55 DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITL 114
Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
E F EAELLVNI H LVP+H +L EK LL RY +KE+QLPRIQ
Sbjct: 115 EQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQ 161
[80][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
Length = 210
Score = 141 bits (356), Expect = 3e-32
Identities = 73/169 (43%), Positives = 112/169 (66%), Gaps = 4/169 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKR---EDLVINKTKK 248
++EIT+++++R+TV+QML+DR Y + + +LN+ + EF ++ + M + E L ++ K
Sbjct: 5 DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64
Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTN-RMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
P+D+IYVF+PE KVGV +K +M + V R I+V ++T AR VSE+
Sbjct: 65 PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+EVF+EAEL+ NI EH LV ++ VL+D KK LL YTV++TQLPRI
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRI 173
[81][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5DLP1_DROPS
Length = 320
Score = 138 bits (347), Expect = 3e-31
Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 5/170 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E E+ KL+ IRKT+ +M DR YLV EL+ T +F + +G+ R DL + +
Sbjct: 4 EAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTMLLS 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P +++ VFFPEE KV VKT+K Y +RM E + RAILV + LTP A+ + +A
Sbjct: 64 HADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEGEGIHRAILVVRDCLTPPAKQSIMAMAP 123
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+ +E F E+EL +N+ +H LVP+H VL++ EKK L Y +KE+Q+ R+
Sbjct: 124 LYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRCYRLKESQMMRM 173
[82][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
Length = 205
Score = 135 bits (340), Expect = 2e-30
Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-MKREDLVINKTKKDK 254
E+ +L+R RKT ML+DR Y+V E N + ++F ++ EN R +++ + K
Sbjct: 2 EDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVD 61
Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
P +++ V+F +E K GVK ++ T RM N+ RAILV Q LT FAR +SE A +
Sbjct: 62 PDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHI 121
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E F E+ELLVNI +H LVP+H L + EK+ LL RY VKE QLPRIQ
Sbjct: 122 IENFMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQ 169
[83][TOP]
>UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SWJ6_PHYPA
Length = 211
Score = 134 bits (337), Expect = 5e-30
Identities = 72/159 (45%), Positives = 103/159 (64%), Gaps = 3/159 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
+ + T LY++RK V++M++D +Y+V D EL +T +F +KY E+ K+EDL+I K K
Sbjct: 7 DRQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNN 66
Query: 258 SDQIYVFFPE---EAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428
++ P+ + +VG+KT+KT RM ENV RA+ V Q +TP ++ +S A K+
Sbjct: 67 AEH----GPKTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQHITPLSKQYISRKAQKY 122
Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
HLEVF E E LVNI E LVP H++L EK TLLERYT
Sbjct: 123 HLEVFLEPEFLVNITECYLVPLHEILTPEEKNTLLERYT 161
[84][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
strain H RepID=B3L6X3_PLAKH
Length = 205
Score = 134 bits (336), Expect = 6e-30
Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
E+ IT+ Y+ RKT +ML+DR Y++ E FK+++ EN K R + I + K+
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
S++I V+F +E K GVK ++ T +M+ +++ RAILV Q +LTPFAR + E A +
Sbjct: 62 ESNKIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E F + ELLVNI +H LVP H L EK+ LL+RY +KE +LPRIQ
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQ 169
[85][TOP]
>UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative
(Fragment) n=1 Tax=Perkinsus marinus ATCC 50983
RepID=C5LN15_9ALVE
Length = 168
Score = 132 bits (333), Expect = 1e-29
Identities = 72/142 (50%), Positives = 95/142 (66%), Gaps = 5/142 (3%)
Frame = +3
Query: 165 LNMTKHEFKDKYGENMKRE----DLVINKTKKDKPSDQIYVFFPEEAK-VGVKTMKTYTN 329
LN TK F ++ E +R+ DL+I +K+D PSDQ+ VFFP+E K VGVK ++T
Sbjct: 2 LNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLAL 61
Query: 330 RMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLN 509
+M + + RAILV Q LT FA+T + E + + +EVF E+EL+VNI H LVPEH+ L
Sbjct: 62 KMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLT 121
Query: 510 DTEKKTLLERYTVKETQLPRIQ 575
EK+ LLERY VKE QLPRIQ
Sbjct: 122 AEEKRLLLERYKVKENQLPRIQ 143
[86][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
Length = 205
Score = 132 bits (333), Expect = 1e-29
Identities = 72/168 (42%), Positives = 107/168 (63%), Gaps = 2/168 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
E+ IT+ Y+ RKT +ML+DR Y++ E FK+++ EN K R + I + K+
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+++I V+F +E K GVK ++ T +M+ +++ RAILV Q +LTPFAR + E A +
Sbjct: 62 ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E F + ELLVNI +H LVP H L EK+ LL+RY +KE +LPRIQ
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQ 169
[87][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
Length = 221
Score = 131 bits (330), Expect = 3e-29
Identities = 63/180 (35%), Positives = 111/180 (61%), Gaps = 14/180 (7%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--------------ENM 212
+ E+ +L+R+ +TV +M++DR YL+ D+E+N++ EFKD++G ++
Sbjct: 5 ANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSS 64
Query: 213 KREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPF 392
R ++ + ++ +D+I+V+F + V +MKT+ M+ R I++ ++P
Sbjct: 65 SRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPA 124
Query: 393 ARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
A+ + E+ S++HLE F E++LLVNI +H LVP+H V+ EK L++RY +KETQLPRI
Sbjct: 125 AKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRI 184
[88][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8ID59_PLAF7
Length = 205
Score = 130 bits (326), Expect = 9e-29
Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-MKREDLVINKTKKDK 254
E+ +T+ Y+ RKT +ML+DR Y++ E FK+ + +N +R + I+ T K+
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61
Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+++I V+F +E K GVK ++ T RM +++ RAILV Q LTPFAR + E A +
Sbjct: 62 SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E F + ELLVNI +H LVP H L EKK LL+RY + E +LPRIQ
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQ 169
[89][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Babesia bovis RepID=A7APR4_BABBO
Length = 205
Score = 128 bits (322), Expect = 3e-28
Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKD 251
++E +L+R R+T +ML+DR Y + + E T EFK +Y + ++ + L++ K D
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKMLLVASLKTD 61
Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
K + + F E K GVK ++ T +M ++ RAILV Q LTPFA+ + E A +
Sbjct: 62 KDAKLLVYFADETKKTGVKPIRELTEKMEDHDIHRAILVTQNVLTPFAKDAILEAAPRNI 121
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E F E ELLVNI +H LVP+H L EK+TLL+RY VKE+Q+PRIQ
Sbjct: 122 IENFLETELLVNITKHELVPKHIPLTADEKQTLLQRYKVKESQIPRIQ 169
[90][TOP]
>UniRef100_B5XGU7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Salmo salar RepID=B5XGU7_SALSA
Length = 159
Score = 128 bits (321), Expect = 4e-28
Identities = 64/139 (46%), Positives = 91/139 (65%), Gaps = 5/139 (3%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
+EE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA +V Q +TP A+ + ++A
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123
Query: 423 KFHLEVFQEAELLVNIKEH 479
K+ LE F + ELL+NI EH
Sbjct: 124 KYILEQFLQQELLINITEH 142
[91][TOP]
>UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4
RepID=UPI00004E3EE0
Length = 181
Score = 126 bits (317), Expect = 1e-27
Identities = 70/152 (46%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Frame = +3
Query: 126 MLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQIYVFFPEEAKVGV 305
ML DR Y++ +E + F + RE+L + KKD P+D IYVFFP+ KVGV
Sbjct: 1 MLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53
Query: 306 KTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA--SKFHLEVFQEAELLVNIKEH 479
+K Y + M RAI+V Q ++TPFA+ ++E + K LE F EAELLVNI H
Sbjct: 54 TQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHH 113
Query: 480 VLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
LVP+H +L EK LL RY +KE+QLPRIQ
Sbjct: 114 QLVPKHILLTKEEKLELLTRYKMKESQLPRIQ 145
[92][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JZQ6_SCHJY
Length = 211
Score = 126 bits (317), Expect = 1e-27
Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 5/171 (2%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKK 248
E I K++R+ KTV Q++ DR Y V EL +T +F+ + G N+ R L K
Sbjct: 6 ERNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFY-AKP 64
Query: 249 DKPSDQ--IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422
SD+ IYV F +E VG+K M+T+ + + N IL+ ++TP A +S +
Sbjct: 65 PPGSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIISTVTG 124
Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+F +E FQE++L+VNI H LVP+H +L EKK LL+RY ++ETQLPRIQ
Sbjct: 125 QFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKLRETQLPRIQ 175
[93][TOP]
>UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FEX9_MAIZE
Length = 127
Score = 125 bits (315), Expect = 2e-27
Identities = 61/91 (67%), Positives = 74/91 (81%)
Frame = +3
Query: 303 VKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHV 482
+K +K Y M ENV RA+LV Q +LTPFA++ + E+ K HLE+FQEAE+L+NIKEHV
Sbjct: 1 MKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHV 60
Query: 483 LVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
LVPEHQVL + EKKTLLERYT+KETQLPRIQ
Sbjct: 61 LVPEHQVLTNEEKKTLLERYTLKETQLPRIQ 91
[94][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
Length = 210
Score = 125 bits (315), Expect = 2e-27
Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 4/174 (2%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVIN 236
M E+ I +++R KT Q++ DR Y V EL++T +FK + G N+ R L
Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60
Query: 237 -KTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSE 413
K D IY+ F +E VG+K M+T+ + + N IL+ S+TP A ++
Sbjct: 61 AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIAT 120
Query: 414 IASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+ +F +E FQE++L+VNI H LVP+H +L+ EKK LL+RY ++ETQLPRIQ
Sbjct: 121 VTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQ 174
[95][TOP]
>UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium
muris RN66 RepID=B6AE06_9CRYT
Length = 205
Score = 125 bits (314), Expect = 2e-27
Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 2/164 (1%)
Frame = +3
Query: 90 TKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKDKPSD 263
T+ +R R+T+ +ML+DR Y+V + + FK+++ + ++ L++ K+D+
Sbjct: 6 TRFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQDQTKR 65
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
I F E K GVK ++ +M+ N+ RAIL+ Q LT A+ + + A K ++E F
Sbjct: 66 IICYFADESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESF 125
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
E ELLVNI H LVP+H +L+D EK LLERY VKETQLPRIQ
Sbjct: 126 LENELLVNITRHELVPKHVLLSDEEKSQLLERYKVKETQLPRIQ 169
[96][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
theta RepID=Q98RN7_GUITH
Length = 214
Score = 122 bits (305), Expect = 3e-26
Identities = 66/174 (37%), Positives = 111/174 (63%), Gaps = 9/174 (5%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDF--ELNMTKHEFKDKYGEN--MKREDLVINKTK 245
++ I L+++R+TV+QM++DR Y+V D +LN+++ F++ Y +N + R+ L I + +
Sbjct: 4 DKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPR 63
Query: 246 KDKPSDQIYVFFPEEAK----VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSE 413
D P ++I + F E K +GVK+++ + R+ +E R +++ LTP A+ VS
Sbjct: 64 WDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSS 123
Query: 414 IASKFHL-EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
I S L E F E EL+VNI H+LVP+H++L+ E K+LLERY++K LP+I
Sbjct: 124 INSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIKFDHLPKI 177
[97][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N141_THEPA
Length = 205
Score = 122 bits (305), Expect = 3e-26
Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
++E +L+R R+T +ML+DR Y + E T EFK +Y + K R +++ +++
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTA 61
Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+++ V+F +E K GVK ++ T RM ++ RAILV Q LTPFA+ + E K
Sbjct: 62 SENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E F E ELLVNI +H LVP+H L EK+ LL++Y VKE+Q+PRIQ
Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQ 169
[98][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
Tax=Theileria annulata RepID=Q4U8E3_THEAN
Length = 205
Score = 120 bits (301), Expect = 7e-26
Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 2/168 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
++E +L+R R+T +ML+DR Y + E T EFK +Y K R +++ + +
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTA 61
Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+++ V+F +E K GVK ++ T RM ++ RAILV Q LTPFA+ + E K
Sbjct: 62 AENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E F E ELLVNI +H LVP+H L EK+ LL++Y VKE+Q+PRIQ
Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQ 169
[99][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
albicans RepID=C4YG42_CANAL
Length = 214
Score = 120 bits (300), Expect = 1e-25
Identities = 67/176 (38%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKT- 242
++ +++L+R KTV +M++DR Y + EL+MT EF+ K ++M +R+ + T
Sbjct: 4 TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63
Query: 243 -----KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+K + ++V F +EA VG+KTM+ + + +N I + Q S+TP A +
Sbjct: 64 TAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLI 123
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+ S +E+FQE +L+VNI H LVP+H LN EKK LL RY +KE+QLPRIQ
Sbjct: 124 PTV-SPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQLPRIQ 178
[100][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
Length = 214
Score = 119 bits (298), Expect = 2e-25
Identities = 66/176 (37%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKT- 242
++ +++L+R KTV +M++DR Y + EL+MT EF+ K ++M +R+ + T
Sbjct: 4 TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63
Query: 243 -----KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+K + ++V F +E+ VG+KTM+ + + +N I + Q S+TP A +
Sbjct: 64 TGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLI 123
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+ S +E+FQE +L+VNI H LVP+H LN EKK LL RY +KE+QLPRIQ
Sbjct: 124 PTV-SPATIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRLKESQLPRIQ 178
[101][TOP]
>UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium
RepID=Q5CNJ4_CRYHO
Length = 205
Score = 117 bits (292), Expect = 8e-25
Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Frame = +3
Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKDKPSDQ 266
+ +R R+T+ +ML+DR Y+V + FK+++ + ++ L++ ++D+
Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 66
Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446
I F E K GVK ++ +M+ + RAIL+ Q LT A+ + + A K ++E F
Sbjct: 67 ICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFL 126
Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
E ELLVNI +H LVP+H +L+D EK LL+RY +KETQLPRIQ
Sbjct: 127 ENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQ 169
[102][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DNB3_LACTC
Length = 215
Score = 117 bits (292), Expect = 8e-25
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKR---------EDL 227
+E +++L+R KTV +M++DR Y + E++++ +FK KY ++M R +
Sbjct: 5 NERNVSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64
Query: 228 VINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
V +K ++V F +EA VG+KTMK + ++ +N I V Q +TP A +
Sbjct: 65 VEEALEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNGVTPSAMKLL 124
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+A +E F EA L+VNI H LVP+H L+D EKK LL RY +KE+QLPRIQ
Sbjct: 125 PSVAPAT-IETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRLKESQLPRIQ 179
[103][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
Length = 210
Score = 116 bits (291), Expect = 1e-24
Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 3/169 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
E E +LY++ T+ QM DR + V +NMT + + YGE R++L K D
Sbjct: 4 EAERYRLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGE-YPRKELSFPVQKVDDD 62
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK---F 428
+D ++VFFPE V V +K+ +R+ S+N+ RAI+V Q + P A++ + + + +
Sbjct: 63 NDGLFVFFPESPDVKVAAIKSLYDRLKSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPY 122
Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E F EAEL+ N+ H LVP H++L ++EK+ LLERY V E +LP+IQ
Sbjct: 123 IVETFAEAELVYNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLPQIQ 171
[104][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TEH4_VANPO
Length = 215
Score = 116 bits (291), Expect = 1e-24
Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI------- 233
SE I++L+R +TV +M++DR Y + E++++ +FK KY ++M R +
Sbjct: 5 SERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANP 64
Query: 234 -NKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+T + P+ ++V F +E VGVKTMK + + +N I V QT++TP A V
Sbjct: 65 TEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
I +E F EA L+VNI H LVP+H L++ EKK LL++Y +KE+QLPRIQ
Sbjct: 125 PSIPPAT-IETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRLKESQLPRIQ 179
[105][TOP]
>UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP
Length = 216
Score = 114 bits (286), Expect = 4e-24
Identities = 62/173 (35%), Positives = 112/173 (64%), Gaps = 9/173 (5%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLV--GDFELNMTKHEFKDKYGENMK--REDLVINKTKK 248
+EI L++IR+T++QML+DR+Y+V +L M++ F+ K+ +N + R +L IN++K
Sbjct: 6 KEILNLFKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKW 65
Query: 249 DKPSDQIYVFF----PEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI 416
+ + +I V F E++ +GVK+++ + R+ + +I+V LT A+ ++ I
Sbjct: 66 LEENMRILVVFIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSI 125
Query: 417 AS-KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
S +E F E+EL+VNI EH LVP+H+++++ E + L +RY+++E QLPRI
Sbjct: 126 NSLDDKIEYFSESELIVNITEHNLVPKHEIISEEEARCLFKRYSIRENQLPRI 178
[106][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MBX4_CANTT
Length = 214
Score = 114 bits (285), Expect = 5e-24
Identities = 61/176 (34%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKTK 245
++ I++L+R KTV +M++DR Y + E++MT EF+ K ++M +R+ +
Sbjct: 4 TDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQAQP 63
Query: 246 KDKPSDQ------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+ ++ ++V F +E+ VG+KTM+ + + +N + + Q S+TP A +
Sbjct: 64 TGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSANKLI 123
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
++ +E+FQE++L+VNI H LVP+H L+ EK LLERY +KE+QLPRIQ
Sbjct: 124 PTVSPSV-IEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRLKESQLPRIQ 178
[107][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DR69_ZYGRC
Length = 215
Score = 114 bits (285), Expect = 5e-24
Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
+E I++L+R KTV +M+KDR Y + E+ + +FK KY ++M R + + +
Sbjct: 5 NERNISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNP 64
Query: 255 PSDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+ I +V F +E VGVKTMKT+ + +N I V Q ++TP A V
Sbjct: 65 TEESIAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNVTPSAMKLV 124
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
I +E F EA L+VNI H LVP+H ++ EK+ LL+RY +KE+QLPRIQ
Sbjct: 125 PSIPPAT-IETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRLKESQLPRIQ 179
[108][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
Length = 215
Score = 114 bits (285), Expect = 5e-24
Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 9/175 (5%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
E I++L+R KTV +M++DR Y + E++++ +FK KY ++M + + + +
Sbjct: 6 ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPT 65
Query: 258 SDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
+ I +V F +EA VGVKTMK + + +N I + Q+ +TP A +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125
Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
A +E F EA L+VNI H LVP+H L++ EKK LL+RY +KE+QLPRIQ
Sbjct: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQ 179
[109][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LUR5_ARATH
Length = 178
Score = 114 bits (284), Expect = 7e-24
Identities = 70/172 (40%), Positives = 95/172 (55%), Gaps = 3/172 (1%)
Frame = +3
Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245
M +EEI +L+ +++T+MQMLKDR YL+ E+ MT EF +KYG+NMKR L+++K +
Sbjct: 1 MALMDEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLR 60
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTC---VSEI 416
K M T + RAILV Q + F+R + +
Sbjct: 61 K---------------------MMT---------MIRAILVVQ-DIKAFSRQALVFLGAV 89
Query: 417 ASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
FH+EVFQE EL+VN+KEHV VPEHQ L EK+ LER + LPRI
Sbjct: 90 YPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLERKRTRFVVLPRI 141
[110][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
Length = 215
Score = 114 bits (284), Expect = 7e-24
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI------- 233
+E +++L+R +TV +M++DR Y + E++++ +FK KY ++M R +
Sbjct: 5 NERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64
Query: 234 -NKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+T K P+ ++V F +E VG+KTMK + + +N I + Q +TP A +
Sbjct: 65 TEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLL 124
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+A +E F E L+VNI H LVP+H L+D EKK LL+RY +KE+QLPRIQ
Sbjct: 125 PSVAPAT-IETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQ 179
[111][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
Length = 215
Score = 113 bits (283), Expect = 9e-24
Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 9/175 (5%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257
E I++L+R +TV +M++DR Y + E++++ +FK KY ++M + + + +
Sbjct: 6 ERGISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPT 65
Query: 258 SDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
+ I +V F +EA VGVKTMK + + +N I + Q+ +TP A +
Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125
Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
A +E F EA L+VNI H LVP+H L+D EKK LL+RY +KE+QLPRIQ
Sbjct: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQ 179
[112][TOP]
>UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) =
Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS
513.88 RepID=A2QAL5_ASPNC
Length = 235
Score = 113 bits (282), Expect = 1e-23
Identities = 73/193 (37%), Positives = 105/193 (54%), Gaps = 24/193 (12%)
Frame = +3
Query: 69 VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK- 245
V ++ E+T+L+R +TV +ML DR Y V + E+ M HEFK KY + + D NK K
Sbjct: 10 VDADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDR--NKMKI 67
Query: 246 -----------------KDKPSDQ-----IYV-FFPEEAKVGVKTMKTYTNRMNSENVFR 356
K P+ Q IYV F P+ VG K ++T+ + ++ N
Sbjct: 68 SARPTEAMQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNHFVDENNFHT 127
Query: 357 AILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLE 536
+ + QT ++P A +S + + E FQE +LLVNI H LVP+H +L+ EK LLE
Sbjct: 128 GVFITQTPISPSAVRLLSSMPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLE 186
Query: 537 RYTVKETQLPRIQ 575
RY +KE+QLPRIQ
Sbjct: 187 RYRLKESQLPRIQ 199
[113][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
Length = 213
Score = 112 bits (281), Expect = 2e-23
Identities = 66/175 (37%), Positives = 105/175 (60%), Gaps = 9/175 (5%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI-----NKT 242
+ +++L+R KTV +M++DR Y + E++M+ EF+ K ++M R + N T
Sbjct: 4 DRTVSRLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQANPT 63
Query: 243 KK--DKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
+ DK D ++V F +EA VG+KTM+ + ++ +N I + Q S+TP A +
Sbjct: 64 AESLDKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLIP 123
Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+ S +E FQE +L+VNI H LVP+H L+ EKK LL+RY +KE+QLPR+Q
Sbjct: 124 TV-SPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRLKESQLPRVQ 177
[114][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
Length = 215
Score = 112 bits (281), Expect = 2e-23
Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
+E I++L+R +TV +M+KDR Y + E+ + +FK KY ++M R + + +
Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANP 64
Query: 255 PSDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+ I +V F +E VGVKTMKT+ + +N I V Q ++TP A V
Sbjct: 65 TEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLV 124
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
I +E F EA L+VNI H LVP+H L+ EK+ LL+RY +KE+QLPRIQ
Sbjct: 125 PSIPPAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQ 179
[115][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Candida glabrata RepID=RPAB1_CANGA
Length = 215
Score = 112 bits (280), Expect = 2e-23
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
++ I++L+R +TV +M++DR Y + EL++T +FK KY ++M R + + +
Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64
Query: 255 PSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+ ++V F +E VGVKTMKT+ + + I + Q ++TP A V
Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
I +E F EA L+VNI H LVP+H LN+ EK LL+RY +KE+QLPRIQ
Sbjct: 125 PSIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQ 179
[116][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=1 Tax=Entamoeba dispar SAW760
RepID=B0EA74_ENTDI
Length = 204
Score = 112 bits (279), Expect = 3e-23
Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKKD 251
E +T +YR KTV++ML+DR Y+ + + N T FK+++ GE + ++L I K++
Sbjct: 2 ENVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61
Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+D I VFF E + + Y + SE+V RAI+V + L+ + + + +
Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQ-PREVK 120
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
E E EL+VN+ HVLVP+H +L+ EK+ LL++Y VKE+QLPR+
Sbjct: 121 WEALLEDELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRL 167
[117][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
HM-1:IMSS RepID=C4LW54_ENTHI
Length = 204
Score = 111 bits (278), Expect = 3e-23
Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKKD 251
E +T +YR KTV++ML+DR Y+ + + N T FK+++ GE + ++L I K++
Sbjct: 2 ESVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61
Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+D I VFF E + + Y + SE+V RAI+V + L+ + + + +
Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQ-PREVK 120
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
E E EL+VN+ H+LVP+H +L+ EK+ LL++Y VKE+QLPR+
Sbjct: 121 WEALLEDELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRL 167
[118][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
Length = 214
Score = 110 bits (276), Expect = 6e-23
Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------REDL 227
++ I++L+R KTV +M++DR Y + E++M+ EF+ + ++M + +
Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63
Query: 228 VINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+K ++V F +EA VG+KTM+ + ++ +N I + Q+S+TP A +
Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+ S +E FQE +L+VNI H LVP+H L EKK LLERY +KE+QLPRIQ
Sbjct: 124 PTV-SPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQ 178
[119][TOP]
>UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG
Length = 214
Score = 110 bits (274), Expect = 1e-22
Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Frame = +3
Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKK- 248
I++L+R +TV +M DR Y + E++ + EF+ K ++M K + N T +
Sbjct: 8 ISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLANPTPEA 67
Query: 249 -DKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA 419
+K SD ++V F +E VG+KTM+ + R+ +N I + Q ++TP A + ++
Sbjct: 68 LEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITPSANKMIPTVS 127
Query: 420 SKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+E FQE++L+VNI H LVP+H L+D EK LL+RY +KE+QLPRIQ
Sbjct: 128 PAI-IETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKLKESQLPRIQ 178
[120][TOP]
>UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Yarrowia lipolytica RepID=RPAB1_YARLI
Length = 212
Score = 110 bits (274), Expect = 1e-22
Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 9/176 (5%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFK----DKYGENMKREDLVI--- 233
S ++ KL+++ +T +++KDR Y + D E+N++ +F D G+ +K++ +
Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASP 61
Query: 234 --NKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407
+K I+V F EEA V VKTM+ + ++ ILV + ++TP A +
Sbjct: 62 SPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLI 121
Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+A ++ FQE +LLVNI +HVLVP H L+ EKK LLERY +KE+QLPRIQ
Sbjct: 122 PSVAPAT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQ 176
[121][TOP]
>UniRef100_A8QAC6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8QAC6_MALGO
Length = 159
Score = 109 bits (273), Expect = 1e-22
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN--MKREDLVINKTKKD 251
+ E +L+R+ +T+ +++ DR Y V + ELN+ FK + N + R + KD
Sbjct: 4 DRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQHKD 63
Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
KP ++++VF+ E VGVKTM+ + N + +N+ R I++ +T A+ + + +
Sbjct: 64 KPEERLFVFYSTERNVGVKTMRQFINILEEKNITRGIIIWSDKMTSAAKKVIEAMRLQLV 123
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
LE F+EA LLVNI H LVP+H+VL EKK LL R
Sbjct: 124 LEDFEEAFLLVNITHHQLVPKHEVLTPDEKKELLHR 159
[122][TOP]
>UniRef100_UPI000194DF40 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
n=1 Tax=Taeniopygia guttata RepID=UPI000194DF40
Length = 119
Score = 107 bits (268), Expect = 5e-22
Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 5/112 (4%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398
D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAK 115
[123][TOP]
>UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1
Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH
Length = 218
Score = 107 bits (266), Expect = 9e-22
Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 1/167 (0%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
S E K Y R+T M+ML+DR Y V D ++N++ +F+ YGE+ + L I+ +
Sbjct: 17 SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
S +I V F V V M+ + ++ EN+ ILV Q+ +T A V + F
Sbjct: 77 SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FK 134
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+E+F+ +LLVN+ +HVL P+HQVLND EK++LL++++++E QLPR+
Sbjct: 135 VELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRL 181
[124][TOP]
>UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis
thaliana RepID=Q9M1J2_ARATH
Length = 222
Score = 107 bits (266), Expect = 9e-22
Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 1/167 (0%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
S EE + Y R+ +QML+DR Y V D ++N++ H+F+ YGE + L I+ +
Sbjct: 21 SSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+ ++ + F + V V +++ + ++ E + ILV Q +T A + + F
Sbjct: 81 STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--FK 138
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+E+FQ +LLVNI +H L P+HQVLND EK TLL++++++E QLPRI
Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRI 185
[125][TOP]
>UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6HAG0_PENCW
Length = 234
Score = 106 bits (264), Expect = 1e-21
Identities = 68/189 (35%), Positives = 102/189 (53%), Gaps = 22/189 (11%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
+E E+T+L+R +TV ++L DR Y V D EL + +F+ KY + + D K +
Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARP 70
Query: 246 -------------KDKPSDQ-----IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
K P+ Q IYV F P+ + VG K ++ + + ++ N I +
Sbjct: 71 TETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130
Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
QT ++P A +S + + E FQE +LLVNI H LVP+H +L+ EK LLERY +
Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERYRL 189
Query: 549 KETQLPRIQ 575
KE+QLPRIQ
Sbjct: 190 KESQLPRIQ 198
[126][TOP]
>UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2ZBC5_ORYSI
Length = 227
Score = 105 bits (263), Expect = 2e-21
Identities = 58/163 (35%), Positives = 94/163 (57%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+ R+T M+ML+DR Y V + E+ T EF+ + E E L T PS
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
++ + F V + T++ + EN+ R +L+ Q+ + AR + EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
Q +LLVNI +HVL P+H+VL+ +K LL+ Y V+++QLPR+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190
[127][TOP]
>UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1
Tax=Arabidopsis thaliana RepID=Q8L947_ARATH
Length = 222
Score = 105 bits (262), Expect = 2e-21
Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 1/167 (0%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
S EE + Y R+ +Q+L+DR Y V D ++N++ H+F+ YGE + L I+ +
Sbjct: 21 SSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
+ ++ + F + V V +++ + ++ E + ILV Q +T A + + F
Sbjct: 81 STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--FK 138
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+E+FQ +LLVNI +H L P+HQVLND EK TLL++++++E QLPRI
Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRI 185
[128][TOP]
>UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q2RAP1_ORYSJ
Length = 227
Score = 105 bits (262), Expect = 2e-21
Identities = 58/163 (35%), Positives = 94/163 (57%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+ R+T M+ML+DR Y V + E+ T EF+ + E E L T PS
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
++ + F V + T++ + EN+ R +L+ Q+ + AR + EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
Q +LLVNI +HVL P+H+VL+ +K LL+ Y V+++QLPR+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190
[129][TOP]
>UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q2QXY2_ORYSJ
Length = 335
Score = 105 bits (262), Expect = 2e-21
Identities = 58/163 (35%), Positives = 94/163 (57%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+ R+T M+ML+DR Y V + E+ T EF+ + E E L T PS
Sbjct: 137 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 196
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
++ + F V + T++ + EN+ R +L+ Q+ + AR + EI KF +++F
Sbjct: 197 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 255
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
Q +LLVNI +HVL P+H+VL+ +K LL+ Y V+++QLPR+
Sbjct: 256 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 298
[130][TOP]
>UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ
Length = 227
Score = 105 bits (262), Expect = 2e-21
Identities = 58/163 (35%), Positives = 94/163 (57%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+ R+T M+ML+DR Y V + E+ T EF+ + E E L T PS
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
++ + F V + T++ + EN+ R +L+ Q+ + AR + EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
Q +LLVNI +HVL P+H+VL+ +K LL+ Y V+++QLPR+
Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190
[131][TOP]
>UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces
dermatitidis RepID=C5G7M7_AJEDR
Length = 236
Score = 105 bits (262), Expect = 2e-21
Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 22/189 (11%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224
++ E+T+L+R +TV +ML DR Y V + E+ + EF+ +Y + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 225 --------LVINKTKKDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
+ T K P + IYV F P+ VG K ++ + + ++ +N I +
Sbjct: 73 SQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGIFI 132
Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY +
Sbjct: 133 SQTPISPSAIRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191
Query: 549 KETQLPRIQ 575
KE+QLPRIQ
Sbjct: 192 KESQLPRIQ 200
[132][TOP]
>UniRef100_Q4P7S7 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P7S7_USTMA
Length = 554
Score = 105 bits (261), Expect = 3e-21
Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKK 248
+ E +L+R+ +T+ ++++DR Y V D E+++ FK +Y G ++ R L
Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHG 63
Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428
+ + +++VF+ + VGVKTM+ + + M ++ R I++ +T AR + + F
Sbjct: 64 EHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123
Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
HLE F+EA LLVNI H LVP+H+ L EKK LL+R
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160
[133][TOP]
>UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4
Length = 287
Score = 105 bits (261), Expect = 3e-21
Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Frame = +3
Query: 96 LYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKR-----EDLVINKTKKD 251
L IR + + D Y + D E+NMT EFK K GE ++ +K
Sbjct: 85 LQTIRTKIWKSSGDIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKF 144
Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
++V F +EA VG+KTM+ + ++ +N I + QTS+TP A + + S
Sbjct: 145 PEMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSITPSANKLIPTV-SPAT 203
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+EVFQE++L+VNI H LVP+H L+ EKK LL+RY +KE+QLPRIQ
Sbjct: 204 IEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRYRLKESQLPRIQ 251
[134][TOP]
>UniRef100_B7T1F2 RNA polymerase II (Fragment) n=1 Tax=Oreochromis niloticus
RepID=B7T1F2_ORENI
Length = 108
Score = 104 bits (260), Expect = 4e-21
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 5/107 (4%)
Frame = +3
Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKKDKP 257
+L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + D P
Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398
+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+
Sbjct: 61 TDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAK 107
[135][TOP]
>UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9ST46_RICCO
Length = 238
Score = 104 bits (260), Expect = 4e-21
Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E + Y R+TV++ML+DR Y V E++++ EF+ +G N + L + T PS
Sbjct: 40 ETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSK 99
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
++ V F + V T++ ++ N +++ ILV Q +T A V KF +E+
Sbjct: 100 RMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLF--KFKVEM 157
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
FQ +LLVNI +HVL P+HQVL D EK+ LL+ Y ++E QLPR+
Sbjct: 158 FQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201
[136][TOP]
>UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN
Length = 236
Score = 104 bits (260), Expect = 4e-21
Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
++ E+T+L+R +TV +ML DR Y V + E+ ++ EF+ +Y + + D NK K
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDR--NKMKISA 70
Query: 246 -----------------KDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
K P + IYV F + VG K ++ + + ++ +N I
Sbjct: 71 RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130
Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542
V QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY
Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 543 TVKETQLPRIQ 575
+KE+QLPRIQ
Sbjct: 190 RLKESQLPRIQ 200
[137][TOP]
>UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb18 RepID=C1FYH2_PARBD
Length = 236
Score = 104 bits (259), Expect = 6e-21
Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
++ E+TKL+R +TV +ML DR Y V + E+ + EF+ +Y + + D NK K
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDR--NKMKISA 70
Query: 246 -----------------KDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAI 362
K P + IYV F + + VG K ++ + + ++ +N I
Sbjct: 71 RPSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGI 130
Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542
+ QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY
Sbjct: 131 FISQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189
Query: 543 TVKETQLPRIQ 575
+KE+QLPRIQ
Sbjct: 190 RLKESQLPRIQ 200
[138][TOP]
>UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR
Length = 216
Score = 103 bits (258), Expect = 7e-21
Identities = 60/164 (36%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E + Y R+TV++MLKDR Y V E++++ +F+ YG+N E L + T K PS
Sbjct: 18 ESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSK 77
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNS-ENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
++ V F V V ++ T ++ +++ ILV Q ++T A + KF +E+
Sbjct: 78 RMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLF--KFKIEI 135
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
FQ +LLVNI +H+L P+HQVL++ K+ LL++Y+++E QLPR+
Sbjct: 136 FQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRL 179
[139][TOP]
>UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb01 RepID=C1GUJ0_PARBA
Length = 236
Score = 103 bits (258), Expect = 7e-21
Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
++ E+TKL+R +TV +ML DR Y V + E+ + EF+ +Y + + D NK K
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70
Query: 246 -----------------KDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAI 362
K P + IYV F + + VG K ++ + + ++ +N I
Sbjct: 71 RPSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGI 130
Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542
+ QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY
Sbjct: 131 FISQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189
Query: 543 TVKETQLPRIQ 575
+KE+QLPRIQ
Sbjct: 190 RLKESQLPRIQ 200
[140][TOP]
>UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
RepID=C0NL28_AJECG
Length = 236
Score = 103 bits (258), Expect = 7e-21
Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 24/191 (12%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245
++ E+T+L+R +TV +ML DR Y V + E+ + EF+ +Y + + D NK K
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70
Query: 246 -----------------KDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
K P + IYV F + VG K ++ + + ++ +N I
Sbjct: 71 RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130
Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542
V QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY
Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189
Query: 543 TVKETQLPRIQ 575
+KE+QLPRIQ
Sbjct: 190 RLKESQLPRIQ 200
[141][TOP]
>UniRef100_B7Q5X9 RNA polymerase, 25-kDa subunit, putative n=1 Tax=Ixodes scapularis
RepID=B7Q5X9_IXOSC
Length = 91
Score = 102 bits (254), Expect = 2e-20
Identities = 49/91 (53%), Positives = 65/91 (71%)
Frame = +3
Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446
++VFFP+E K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A K+ LE F
Sbjct: 1 MFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFL 60
Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
E+ELL+NI EH LVPEH VL EK LL R
Sbjct: 61 ESELLINITEHELVPEHVVLTPEEKAELLAR 91
[142][TOP]
>UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2
Tax=Emericella nidulans RepID=C8VQY1_EMENI
Length = 235
Score = 102 bits (254), Expect = 2e-20
Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 22/189 (11%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY-GEN--MKREDLVINK-- 239
+E E +++R +TV +ML+DR Y V + E+ + EFK KY GE RE L I
Sbjct: 12 AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARP 71
Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
T PS++ IY+ F P+++ +G K ++T+ + ++ N I +
Sbjct: 72 TEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFI 131
Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
+T ++P A +S I + E FQE +LLVNI H LVP+H +L+ EK LL+RY +
Sbjct: 132 TKTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRYRL 190
Query: 549 KETQLPRIQ 575
KE+QLPRIQ
Sbjct: 191 KESQLPRIQ 199
[143][TOP]
>UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR
Length = 248
Score = 102 bits (253), Expect = 3e-20
Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E + Y R+TV++MLKDR Y + E+ ++ +F+ +G++ + L + T PS
Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
+I V F V V ++ ++ N E++ IL+ Q +T A V+ ++ F +E+
Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
FQ +LLVN +HVL P+HQVL D +KK LL++Y ++E QLPR+
Sbjct: 168 FQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRM 211
[144][TOP]
>UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides
RepID=C5PAC2_COCP7
Length = 236
Score = 100 bits (250), Expect = 6e-20
Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 22/189 (11%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224
++ E+T+L+R +TV +ML DR Y V + E+N+ EF+ KY + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARP 72
Query: 225 ---LVINKTKKDKPSDQ--------IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILV 368
++ T P+ IYV F +A+ VG K ++ + + ++ +N I +
Sbjct: 73 SQTMIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFI 132
Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
Q+ ++P A ++ I +F E F E ELLVNI H LVP+H +L+ EKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191
Query: 549 KETQLPRIQ 575
KE+QLPRIQ
Sbjct: 192 KESQLPRIQ 200
[145][TOP]
>UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus
RepID=A1CP51_ASPCL
Length = 234
Score = 100 bits (250), Expect = 6e-20
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 22/189 (11%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINK----- 239
++ E+T+L+R +TV +ML DR Y V + E+ + EF+ KY + + D K
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARP 70
Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
T P++ IYV F + + VG K ++ + + ++ N + +
Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFI 130
Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
QT ++P A +S I + E FQE +LLVNI H LVP+H +L+ EKK LL+RY +
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189
Query: 549 KETQLPRIQ 575
KE+QLPRIQ
Sbjct: 190 KESQLPRIQ 198
[146][TOP]
>UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum
bicolor RepID=C5Y4H1_SORBI
Length = 263
Score = 100 bits (248), Expect = 1e-19
Identities = 58/163 (35%), Positives = 89/163 (54%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+ R+T ++ML+DR Y V + EL T EF+ + + + E L + T PS
Sbjct: 65 ESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPELERLAFSTTLASDPSS 124
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
++ V F V + ++ + EN+ R IL+ Q + AR + EI + ++ F
Sbjct: 125 KVKVVFCPPEPVKIAAIRVVYTGVKDENLSRLILILQGRIMSKAREAIKEI-FPYKVDTF 183
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
Q ELLVNI +H L P+HQVL EK LL+ Y V ++QLPR+
Sbjct: 184 QITELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRM 226
[147][TOP]
>UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D205_NEOFI
Length = 234
Score = 100 bits (248), Expect = 1e-19
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 22/189 (11%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINK----- 239
++ E+T+L+R +TV +ML DR Y V + E+ + EF+ KY + + D K
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARP 70
Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368
T P++ IYV F + VG K ++ + + ++ N + +
Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFI 130
Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
QT ++P A +S I + E FQE +LLVNI H LVP+H +L+ EKK LL+RY +
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189
Query: 549 KETQLPRIQ 575
KE+QLPRIQ
Sbjct: 190 KESQLPRIQ 198
[148][TOP]
>UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE
Length = 239
Score = 99.4 bits (246), Expect = 2e-19
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 25/192 (13%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224
+ E+T+L+R KTV +ML DR Y V + E+ ++ ++F+ KY + + D
Sbjct: 13 ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72
Query: 225 ------LVINKTKKDKPSDQ--------IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRA 359
++ T P+ IYV F +A+ VG K ++ + + ++ +N
Sbjct: 73 ARPSQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG 132
Query: 360 ILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
I + Q+ ++P A ++ I +F E F E ELLVNI H LVP+H +L+ EKK LL R
Sbjct: 133 IFITQSPISPSAVRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHR 191
Query: 540 YTVKETQLPRIQ 575
Y +KE+QLPRIQ
Sbjct: 192 YRLKESQLPRIQ 203
[149][TOP]
>UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
Tax=Medicago truncatula RepID=Q2HW77_MEDTR
Length = 224
Score = 99.0 bits (245), Expect = 2e-19
Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
S E + + RKT+M ML DR Y V + +L ++ EF+ ++GE K L ++ + +
Sbjct: 23 SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
PS ++ V FP + + +++ + E + R ILV Q+ +T +AR + F
Sbjct: 83 PSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELENCP--FK 140
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+E+ Q +LLVN+ +HVL P+++VL EK+ LL +Y V+E QLP +
Sbjct: 141 VEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLPHM 187
[150][TOP]
>UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7ECH0_SCLS1
Length = 242
Score = 98.6 bits (244), Expect = 3e-19
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 24/190 (12%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN---MKREDLVINKTKK 248
+ E KL+R +TV +M++DR YL+ + E+NM+ FK K+ N + R + + T
Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFSATPS 75
Query: 249 DK--------PSDQ-----------IYVFF--PEEAKVGVKTMKTYTNRMNSENVFRAIL 365
+ P+ Q I+V F + +G+K M+T+ ++ N IL
Sbjct: 76 EAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135
Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
+ + A+ + +AS +E F E +LLVNI H LVP+H +L+ E+ LL RY
Sbjct: 136 IAPVPPSGPAQKIIPAVASDTRIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYR 195
Query: 546 VKETQLPRIQ 575
+K+TQLPRIQ
Sbjct: 196 LKDTQLPRIQ 205
[151][TOP]
>UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
B05.10 RepID=A6SPK6_BOTFB
Length = 242
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 24/190 (12%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-------------MKR 218
+ E KL+R +TV +M++DR YL+ + E+NM+ FK K+ N
Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFSATPS 75
Query: 219 EDLVI-----------NKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365
E ++ N T + + I + +G+K M+T+ ++ N IL
Sbjct: 76 EAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135
Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
+ + + A+ + +AS+ +E F E +LLVNI H LVP+H +L+ E+ LL RY
Sbjct: 136 IAPVAPSGPAQKIIPAVASETRIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYR 195
Query: 546 VKETQLPRIQ 575
+K+TQLPRIQ
Sbjct: 196 LKDTQLPRIQ 205
[152][TOP]
>UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
RepID=B6TJI5_MAIZE
Length = 264
Score = 97.8 bits (242), Expect = 5e-19
Identities = 57/163 (34%), Positives = 88/163 (53%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+ R+T ++ML+DR Y V + EL T EF+ + + E L + T PS
Sbjct: 66 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLASDPSS 125
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
++ V F V + ++ + EN+ R IL+ Q + R + EI +F ++ F
Sbjct: 126 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 184
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
Q ELLVNI +HVL P+H+VL K LL+ Y V ++QLPR+
Sbjct: 185 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRM 227
[153][TOP]
>UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FYH9_MAIZE
Length = 248
Score = 97.8 bits (242), Expect = 5e-19
Identities = 57/163 (34%), Positives = 88/163 (53%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+ R+T ++ML+DR Y V + EL T EF+ + + E L + T PS
Sbjct: 50 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 109
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
++ V F V + ++ + EN+ R IL+ Q + R + EI +F ++ F
Sbjct: 110 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 168
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
Q ELLVNI +HVL P+H+VL K LL+ Y V ++QLPR+
Sbjct: 169 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRM 211
[154][TOP]
>UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QJL2_VITVI
Length = 229
Score = 97.4 bits (241), Expect = 7e-19
Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E + Y R+T+++ML+DR Y + +++++ +F+ Y + + L I+ + PS
Sbjct: 31 ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 90
Query: 264 QIYVFFPEEAKVGVKTMKTY-TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
+I V F V V +++ T +N +++ + ILV Q +T A V + F +E
Sbjct: 91 KILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQVEK 148
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
FQ +LLVNI +HVL P+H+VL D EK LL++Y++ E QLPR+
Sbjct: 149 FQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRM 192
[155][TOP]
>UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA
Length = 223
Score = 97.1 bits (240), Expect = 9e-19
Identities = 57/159 (35%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
Frame = +3
Query: 99 YRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQIYVF 278
Y R+T M+ML+DR Y + + ++N+T EF+ YG+ + L I+ S +I V
Sbjct: 29 YLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRISAQHCSDSSKKIAVV 88
Query: 279 FPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAE 455
F V V ++ + + EN+ ILV Q+ +T A V + F +E+FQ E
Sbjct: 89 FCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFS--FKVELFQLTE 146
Query: 456 LLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
LLVNI +HVL P+H VLN+ EK++L ++++++E QLP++
Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKL 185
[156][TOP]
>UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QBA7_PENMQ
Length = 236
Score = 96.7 bits (239), Expect = 1e-18
Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 23/190 (12%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVIN--- 236
+ E+ +L+R +TV +ML+DR Y + + EL + +F +K+ ++ RE + I
Sbjct: 12 ARNEMARLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIP 71
Query: 237 ----KTK----KDKPSD--------QIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAIL 365
K K K +P+D QI+V F E+ VG K ++ + + ++ N I
Sbjct: 72 SEAMKAKYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIF 131
Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
+ +T+++P A ++ E FQE++LLVNI H LVP+H +L+ EK LLERY
Sbjct: 132 ITRTAISPSAVRLLNSAIGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190
Query: 546 VKETQLPRIQ 575
+KE+QLPRIQ
Sbjct: 191 LKESQLPRIQ 200
[157][TOP]
>UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500
RepID=B8M3B9_TALSN
Length = 236
Score = 95.9 bits (237), Expect = 2e-18
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 23/190 (12%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG----------------- 203
+ E+ +L+R +TV +ML+DR Y + + E+ + +F +K+G
Sbjct: 12 ARNEMARLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMP 71
Query: 204 -ENMKREDLVINKTKKDKPS----DQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAIL 365
E MK + + K D IYV F E+ VG K ++ + + ++ N I
Sbjct: 72 SEAMKAKYTPLKKRVSDPDPVPDCGPIYVQFCEDTTGVGAKQVRAFNHLVDEGNYHSGIF 131
Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
+ +T+++P A +S E FQE++LLVNI H LVP+H +L+ EK LLERY
Sbjct: 132 ITRTAISPSAMRLLSSAVGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190
Query: 546 VKETQLPRIQ 575
+KE+QLPRIQ
Sbjct: 191 LKESQLPRIQ 200
[158][TOP]
>UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXN9_SOYBN
Length = 237
Score = 95.5 bits (236), Expect = 3e-18
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E + Y R+T ++MLKDR Y + E++++ +F+D +G+ + L ++ T S
Sbjct: 39 ESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLSLTHATNSSK 98
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
+I V F V V ++ ++ N + + IL+ + +T A V+ + F +E+
Sbjct: 99 RILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFS--FKVEI 156
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
FQ +LLVNI +HVL P+HQVL D +K LL++Y ++E QLPR+
Sbjct: 157 FQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRM 200
[159][TOP]
>UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans
RepID=Q59PF3_CANAL
Length = 179
Score = 95.1 bits (235), Expect = 3e-18
Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 9/144 (6%)
Frame = +3
Query: 171 MTKHEFKDKYGENM---KREDLVINKT------KKDKPSDQIYVFFPEEAKVGVKTMKTY 323
MT EF+ K ++M +R+ + T +K + ++V F +EA VG+KTM+ +
Sbjct: 1 MTLEEFRSKICDSMGTPQRKQMCFQATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNF 60
Query: 324 TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQV 503
+ +N I + Q S+TP A + + S +E+FQE +L+VNI H LVP+H
Sbjct: 61 CIHITEKNFSTGIFIYQNSMTPSANKLIPTV-SPATIEIFQENDLIVNITHHELVPKHLK 119
Query: 504 LNDTEKKTLLERYTVKETQLPRIQ 575
LN EKK LL RY +KE+QLPRIQ
Sbjct: 120 LNREEKKELLTRYRLKESQLPRIQ 143
[160][TOP]
>UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001985D3D
Length = 1260
Score = 94.4 bits (233), Expect = 6e-18
Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = +3
Query: 48 HTNGVTMVFSEE----EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK 215
H NG + E E + Y R+T+ QML DR Y V EL + +F+ +G N
Sbjct: 8 HGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPD 67
Query: 216 REDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA 395
L I PS +I V F ++ ++ ++N E + R ILV Q+ + A
Sbjct: 68 PSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHA 127
Query: 396 RTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
R V E K +E FQ ELL+NI +HV VP+H++L+ EK+ L+ +Y +++ Q P +Q
Sbjct: 128 RKVVDEYPIK--VEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQ 185
[161][TOP]
>UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence
n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI
Length = 221
Score = 94.4 bits (233), Expect = 6e-18
Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = +3
Query: 48 HTNGVTMVFSEE----EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK 215
H NG + E E + Y R+T+ QML DR Y V EL + +F+ +G N
Sbjct: 8 HGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPD 67
Query: 216 REDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA 395
L I PS +I V F ++ ++ ++N E + R ILV Q+ + A
Sbjct: 68 PSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHA 127
Query: 396 RTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
R V E K +E FQ ELL+NI +HV VP+H++L+ EK+ L+ +Y +++ Q P +Q
Sbjct: 128 RKVVDEYPIK--VEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQ 185
[162][TOP]
>UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA
Length = 202
Score = 93.2 bits (230), Expect = 1e-17
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254
S E+ + +RI T+ QM++DR Y V L ++ +F Y N +N+ +
Sbjct: 2 SSEKESMYFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHN----LNECYSNM 57
Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTS-LTPFARTCVSEIASKFH 431
++I FF ++ KT++T M+ V RAI++ LTP A + + S
Sbjct: 58 EGERILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGK 117
Query: 432 -LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+E F E+++NI EH LVP+H+VL + EK+ +L+RY V ETQLPRI
Sbjct: 118 TIEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRI 165
[163][TOP]
>UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RGC5_RICCO
Length = 239
Score = 92.4 bits (228), Expect = 2e-17
Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E + Y RKTVM+ML+DR Y V D EL + EF ++G+N L I+ + P
Sbjct: 41 ESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLRISASLHSHPDK 100
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
++ V F ++ + ++ ++ N E++ IL+ Q+ + +AR + + SK +E+
Sbjct: 101 KMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSK--VEI 158
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
F ++LLVNI +HVL P H+VL +K+ LL +++ ++ QLPR+
Sbjct: 159 FHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRM 202
[164][TOP]
>UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN
Length = 219
Score = 92.4 bits (228), Expect = 2e-17
Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Frame = +3
Query: 69 VFSEEEITKLYRIRKTVMQMLKDRN--YLVGDFELNMTKHEFKDKYGENMKREDLVINKT 242
V ++ E+T+L+R +TV +ML+DR + + K + + + E M+ + + K
Sbjct: 10 VDADREMTRLWRTWRTVFEMLQDRPSPQRILLTLASRAKMKIQARPTEAMQVKYTPLTKQ 69
Query: 243 -KKDKPSD--QIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
+ P+D IYV F P+ + VG K ++ + + ++ N I + QT ++P A +S
Sbjct: 70 GQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVRLLS 129
Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
+ + E FQE +LLVNI H LVP+H +L+ EKK LL+RY +KE+QLPRIQ
Sbjct: 130 GVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQ 183
[165][TOP]
>UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum
canis CBS 113480 RepID=C5FC74_NANOT
Length = 236
Score = 92.0 bits (227), Expect = 3e-17
Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 22/189 (11%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224
++ E+ +L+R +TV ++L DR Y V + E+ ++ EF+ +Y + + D
Sbjct: 13 ADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRISARP 72
Query: 225 --------LVINKTKKDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILV 368
+ T K + + I+V F E + VG K ++ + ++ +N I +
Sbjct: 73 SQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
Q+ ++P A ++ I +F E F E ELLVNI H LVP+H +L+ EKK LL+RY +
Sbjct: 133 TQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRL 191
Query: 549 KETQLPRIQ 575
KE+QLPRIQ
Sbjct: 192 KESQLPRIQ 200
[166][TOP]
>UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR
Length = 233
Score = 91.3 bits (225), Expect = 5e-17
Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E + Y R+TV++MLKDR Y V D ELN + EF+ +G + + L + + + P
Sbjct: 35 ESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHK 94
Query: 264 QIYVFFPEEAKVGVKTMKT-YTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
+ V F ++ ++T Y +N E++ IL+ Q+ + FA+ + + F +EV
Sbjct: 95 KTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFP--FKVEV 152
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
FQ +LLVNI +HVL P+ +L +K+ ++ +Y +++ QLPR+
Sbjct: 153 FQITDLLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQLPRM 196
[167][TOP]
>UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2VUN9_PYRTR
Length = 235
Score = 90.9 bits (224), Expect = 6e-17
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 26/189 (13%)
Frame = +3
Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN------------------- 209
+ +L+R+ KT +M+ DR Y+V + ++NM+ +F KY
Sbjct: 11 LMRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYAREDGEPDRSRLNFSCQPSEEM 70
Query: 210 -MKREDLVINKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSL 383
K D K P+ I+V F + VG+K ++ Y + + + I++ +
Sbjct: 71 LAKYTDAPTKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKPM 130
Query: 384 TPFARTCVSEIAS-----KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548
T A + S K +EVF E +LLVNI +H LVP+H +L+D EK+ LL+RY +
Sbjct: 131 TGMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRL 190
Query: 549 KETQLPRIQ 575
K+TQLPRIQ
Sbjct: 191 KQTQLPRIQ 199
[168][TOP]
>UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina
RepID=B2AZ24_PODAN
Length = 235
Score = 90.9 bits (224), Expect = 6e-17
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 22/187 (11%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY--GENMKREDLV------- 230
++E+++L+R +T+ +M+ DR Y + + E+ M EFK K+ G+ ++
Sbjct: 12 DKEVSRLWRAWRTIHEMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSARPS 71
Query: 231 INKTKKDKPSDQ------------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVC 371
+ KK P I+V F PE+ +G+ MK + + + ILV
Sbjct: 72 ASMIKKFTPPPTASNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAGILVT 131
Query: 372 QTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVK 551
+L+ AR ++ + +E F E +LLVNI H LVP H +L+ EK LL+RY +K
Sbjct: 132 AVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKRYRLK 191
Query: 552 ETQLPRI 572
ETQLPRI
Sbjct: 192 ETQLPRI 198
[169][TOP]
>UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL
Length = 179
Score = 90.5 bits (223), Expect = 8e-17
Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 9/144 (6%)
Frame = +3
Query: 171 MTKHEFKDKYGENM---KREDLVINKTKKDKPSDQ------IYVFFPEEAKVGVKTMKTY 323
MT EF+ K ++M +R+ + T + D+ ++V F +E VG+KTM+ +
Sbjct: 1 MTLEEFRAKVCDSMGYPQRKLMCFQATPTAEQLDKFPEMGSLWVEFCDEPSVGIKTMRNF 60
Query: 324 TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQV 503
++ +N I + Q S+TP A + + +E FQE +L+VNI H LVP+H
Sbjct: 61 CIHISEKNFQVGIFIYQNSITPSANKLIPTVQPA-SIETFQETDLIVNITHHELVPKHIK 119
Query: 504 LNDTEKKTLLERYTVKETQLPRIQ 575
LN EKK LLERY +KE+QLPRIQ
Sbjct: 120 LNREEKKELLERYRLKESQLPRIQ 143
[170][TOP]
>UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4QW70_MAGGR
Length = 259
Score = 90.5 bits (223), Expect = 8e-17
Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 22/183 (12%)
Frame = +3
Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE---NMKREDLVINKTKKDK--- 254
KL+R +T+ QML DR Y + + E N++ F + + N+ + L + D
Sbjct: 12 KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLK 71
Query: 255 -------PSD--------QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTP 389
P+D I+V F E K+GV K + + ILV Q +L+
Sbjct: 72 LHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSS 131
Query: 390 FARTCVSEIASKFH-LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLP 566
AR +S S + +E F +LLVNI H LVP+H +L+ EKK LLERY +KETQLP
Sbjct: 132 GARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKETQLP 191
Query: 567 RIQ 575
RIQ
Sbjct: 192 RIQ 194
[171][TOP]
>UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7Z7I7_NECH7
Length = 234
Score = 90.1 bits (222), Expect = 1e-16
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK----- 245
+E+ +L+R +TV +M+ DR Y + + E+ ++ F+D+Y D IN+ K
Sbjct: 13 KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCN----PDGSINRAKLQFSA 68
Query: 246 ---------------KDKPSD-----QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365
DKP I+V F + GV ++ + + + + I+
Sbjct: 69 RPSESMLRKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTGIM 128
Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
V L+P AR ++ + S +E F E +LLVNI H LVP+H +L+ EK LL+RY
Sbjct: 129 VTHVPLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYR 188
Query: 546 VKETQLPRI 572
+KETQLPRI
Sbjct: 189 LKETQLPRI 197
[172][TOP]
>UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR
Length = 234
Score = 89.7 bits (221), Expect = 1e-16
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 23/189 (12%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE------------NMKR 218
+ +E+++L+R +TV +M++DR Y + + E+ ++ FK +Y + +
Sbjct: 10 ASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEYTNEDGTPNRAKLQFSARP 69
Query: 219 EDLVINK-TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRA-IL 365
+ +I K T PS+ I+V F E+ +GV MK + S+N F+A I
Sbjct: 70 SEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHC-SDNKFKAGIF 128
Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
+ L+ AR +S + +E F E +LLVNI H LVP+H +L+ EK LL+RY
Sbjct: 129 ITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKRYR 188
Query: 546 VKETQLPRI 572
+KETQLPRI
Sbjct: 189 LKETQLPRI 197
[173][TOP]
>UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023E584
Length = 253
Score = 89.4 bits (220), Expect = 2e-16
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-------NMKREDLVINK 239
+E+ +L+R +TV +M+ DR Y + + E+ ++ F+D+Y N R L +
Sbjct: 13 KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSININYSRNKLSFSA 72
Query: 240 ----------------TKKDKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365
D +D I++ F + GV ++ + + + S N I+
Sbjct: 73 RPSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNNYKTGIM 132
Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
+ L+P AR ++ + S +E F E +LLVNI H LVP+H +L+ EK LL+RY
Sbjct: 133 ITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRYR 192
Query: 546 VKETQLPRI 572
+KETQLPRI
Sbjct: 193 LKETQLPRI 201
[174][TOP]
>UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis
thaliana RepID=Q9M1H8_ARATH
Length = 233
Score = 89.4 bits (220), Expect = 2e-16
Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 1/165 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E + Y R T +ML+DR Y V + EL++T EF+ +GE + E L I + P
Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94
Query: 264 QIYVFFPEEAKVGVKTMKT-YTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
+I V F + VK+++ + N+ + ILV Q+ + FA+ ++ F +E
Sbjct: 95 KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTF--PFTVET 152
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
F +LLVNI +H+ P+ ++LN EK+ LL ++ +++ QLP +Q
Sbjct: 153 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQ 197
[175][TOP]
>UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UZB4_PHANO
Length = 277
Score = 89.0 bits (219), Expect = 2e-16
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 26/192 (13%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-------------NMKR 218
+ + +++R+ +T +M+ +R Y V D E+ M+ F DKY +
Sbjct: 50 QPSLIRMWRVWRTAKEMMYERGYNVLDEEMTMSLEAFADKYAREDGEPDRSRLNFSSTPS 109
Query: 219 EDLVINKTK---KDKPSD-----QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ 374
E+++I T K +P+ I+ F + VG+K ++ + N + S + + I+V
Sbjct: 110 EEMLIKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGLKQLRDFMNHLGSGSFYSGIMVTV 169
Query: 375 TSLTPFARTCVSEIAS-----KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539
+T A + ++ K +EVF E +LLVNI +H LVP+H +L+ EK LL R
Sbjct: 170 KPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLTR 229
Query: 540 YTVKETQLPRIQ 575
Y +KETQLPRIQ
Sbjct: 230 YRLKETQLPRIQ 241
[176][TOP]
>UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia
guilliermondii RepID=A5DHL4_PICGU
Length = 179
Score = 88.6 bits (218), Expect = 3e-16
Identities = 47/103 (45%), Positives = 67/103 (65%)
Frame = +3
Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446
++V F +EA VG+KTM+ + ++ +N I + Q S+TP A V +A +E FQ
Sbjct: 42 LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLVPTVAPA-SIETFQ 100
Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
E++L+VNI H LVP+H L+ EKK LL RY +KE+QLPRIQ
Sbjct: 101 ESDLIVNITHHDLVPKHIKLSIGEKKELLARYRLKESQLPRIQ 143
[177][TOP]
>UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RKX0_PLAYO
Length = 112
Score = 88.2 bits (217), Expect = 4e-16
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Frame = +3
Query: 312 MKTY--TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVL 485
MK Y T +M+ +++ RAILV Q +LTPFA+ + E A + +E F + ELLVNI +H L
Sbjct: 1 MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHEL 60
Query: 486 VPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
VP+H L EK+ LL+RY +KE +LPRIQ
Sbjct: 61 VPKHIPLTSDEKRNLLQRYKIKENKLPRIQ 90
[178][TOP]
>UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi
RepID=Q4XTK3_PLACH
Length = 126
Score = 88.2 bits (217), Expect = 4e-16
Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Frame = +3
Query: 312 MKTY--TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVL 485
MK Y T +M+ +++ RAILV Q +LTPFA+ + E A + +E F + ELLVNI +H L
Sbjct: 1 MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHEL 60
Query: 486 VPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
VP+H L EK+ LL+RY +KE +LPRIQ
Sbjct: 61 VPKHIPLTSDEKRNLLQRYKIKENKLPRIQ 90
[179][TOP]
>UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus
RepID=Q6MY78_ASPFU
Length = 220
Score = 88.2 bits (217), Expect = 4e-16
Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 8/175 (4%)
Frame = +3
Query: 75 SEEEITKLYRIRKTVMQMLKDR------NYLVGDFELNMTKHEFKDKYGENMKREDLVIN 236
++ E+T+L+R +TV +ML DR + + + K + K L
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRPRSTRLTHFLQPYSRTKMKISARPTAAMQAKYTPLPTP 70
Query: 237 KTKKDKPS-DQIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410
+P IYV F + VG K ++ + + ++ N + + QT ++P A +S
Sbjct: 71 ANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLS 130
Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
I + E FQE +LLVNI H LVP+H +L+ EKK LL+RY +KE+QLPRIQ
Sbjct: 131 GIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQ 184
[180][TOP]
>UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2H038_CHAGB
Length = 220
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Frame = +3
Query: 81 EEITKL-YRIRKTVMQMLKDR---NYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248
+E+T+L Y + + +++ DR Y D N +K +F + E+M ++
Sbjct: 12 KEVTRLDYELAEDEVKISLDRFRLEYTNDDGSPNRSKMQFSARPSESMIKKFTPPPTPSN 71
Query: 249 DKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI 416
P+ + I+V F PE+A +G+ MK + + N ILV +L+ AR ++
Sbjct: 72 PDPAPECGTIWVEFCPEKASIGINVMKKFVEHCGTNNFKAGILVTAVALSAQARKVMTVT 131
Query: 417 ASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+ +E F E +LLVNI H LVP+H +L+ EK LL+RY +KETQLPRI
Sbjct: 132 SQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKRYRLKETQLPRI 183
[181][TOP]
>UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
VaMs.102 RepID=C9S900_9PEZI
Length = 231
Score = 83.2 bits (204), Expect = 1e-14
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 22/187 (11%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVIN----- 236
+E+ + +R +TV +M DR Y + + E+ ++ F+ +Y ++ R L +
Sbjct: 9 KEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSARPSS 68
Query: 237 -------------KTKKDKPSDQIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ 374
D IY+ F E+ +GV+ ++ + + + I+V
Sbjct: 69 DMLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAGIMVTS 128
Query: 375 TSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKE 554
+ LT R + + S +E F E +LLVNI H LVP+H +L+ EK LL+RY +KE
Sbjct: 129 SPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKRYRLKE 188
Query: 555 TQLPRIQ 575
TQLPRI+
Sbjct: 189 TQLPRIK 195
[182][TOP]
>UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb03 RepID=C0S407_PARBP
Length = 171
Score = 82.8 bits (203), Expect = 2e-14
Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Frame = +3
Query: 267 IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
IYV F + + VG K ++ + + ++ +N I + QT ++P A ++ I +F E F
Sbjct: 33 IYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRF-CEHF 91
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
QE ELLVNI H LVP+H +L+ EKK LL+RY +KE+QLPRIQ
Sbjct: 92 QEQELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQLPRIQ 135
[183][TOP]
>UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide E, partial n=1 Tax=Hydra magnipapillata
RepID=UPI0001925DCF
Length = 187
Score = 81.6 bits (200), Expect = 4e-14
Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Frame = +3
Query: 99 YRIRKTVMQ--MLKDRNYLVG-DFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQI 269
Y + K V++ + KD + + D E N+ K ++ + K D +I D Q+
Sbjct: 2 YVLYKLVLEWNIAKDIEWNIAKDIEWNIAKDI---EWNIDKKNHDKLIKLF--DSTKYQM 56
Query: 270 YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQE 449
+VFFPEE KVG+KT+K Y RM E + RAI+V QT +TP A+
Sbjct: 57 FVFFPEEEKVGIKTIKQYCTRMQEEGINRAIIVVQTGMTPSAKQ---------------- 100
Query: 450 AELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
LVPEH VL+ EK LL RY +K+ QLPRIQ
Sbjct: 101 -----------LVPEHVVLSPEEKAELLTRYKLKDHQLPRIQ 131
[184][TOP]
>UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE
Length = 176
Score = 80.9 bits (198), Expect = 7e-14
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 5/166 (3%)
Frame = +3
Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG-----ENMKREDLVINKTKKDKP 257
+L+R+R T+ Q+ +DR Y V +L +T+ F +++G E +R DL + P
Sbjct: 13 RLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSDLDFVVQRASDP 72
Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437
+DQ+ V+F + KVG+ ++ +
Sbjct: 73 TDQLGVYFANDPKVGIAVVRDF-------------------------------------- 94
Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
F+E EL+VN+ +H LVP+H + EK LLERY +KE QLPRI+
Sbjct: 95 -FEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIK 139
[185][TOP]
>UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B4DJ89_HUMAN
Length = 117
Score = 80.9 bits (198), Expect = 7e-14
Identities = 40/81 (49%), Positives = 54/81 (66%)
Frame = +3
Query: 333 MNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLND 512
M EN+ RA++V Q +TP A+ + ++A K+ LE F + ELL+NI EH LVPEH V+
Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60
Query: 513 TEKKTLLERYTVKETQLPRIQ 575
E LL RY ++E QLPRIQ
Sbjct: 61 EEVTELLARYKLRENQLPRIQ 81
[186][TOP]
>UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi
RepID=Q8T1Q5_TRYCR
Length = 219
Score = 80.5 bits (197), Expect = 9e-14
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 11/171 (6%)
Frame = +3
Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQI- 269
K++R+ +TV +M+ DR Y V D + + EFKD Y + RE VI + + P ++I
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREG-VIYRDRMTVPCERIG 73
Query: 270 -------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK- 425
VFF E + ++TMK Y + + N R I+V Q + + V +I
Sbjct: 74 VSQRSRAMVFFSEG--LSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSS 131
Query: 426 --FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+++F E +L+VNI H LVP+H L D E K +L+ + ++ + LPRI
Sbjct: 132 LGLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRI 182
[187][TOP]
>UniRef100_B5LZ31 RNA polymerase II (Fragment) n=1 Tax=Psetta maxima
RepID=B5LZ31_PSEMX
Length = 87
Score = 80.1 bits (196), Expect = 1e-13
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 5/84 (5%)
Frame = +3
Query: 162 ELNMTKHEFKDKYGENM-----KREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYT 326
EL+ T EFK ++G+ +R DL + D P+DQ++VFFPEE KVG+KT+K Y
Sbjct: 3 ELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYC 62
Query: 327 NRMNSENVFRAILVCQTSLTPFAR 398
RM EN+ RAI+V Q +TP A+
Sbjct: 63 QRMQEENITRAIIVVQMGMTPSAK 86
[188][TOP]
>UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus
RepID=B0XMP1_ASPFC
Length = 171
Score = 79.7 bits (195), Expect = 1e-13
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = +3
Query: 267 IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
IYV F + VG K ++ + + ++ N + + QT ++P A +S I + E F
Sbjct: 33 IYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRI-CEHF 91
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
QE +LLVNI H LVP+H +L+ EKK LL+RY +KE+QLPRIQ
Sbjct: 92 QEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQ 135
[189][TOP]
>UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8N6W2_ASPFN
Length = 171
Score = 78.6 bits (192), Expect = 3e-13
Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +3
Query: 267 IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
IYV F P+ VG K ++ + + ++ N + + QT ++P A +S + + E F
Sbjct: 33 IYVEFCPDSTGVGTKQVRAFNHVVDENNFHTGVFITQTPISPSAVRLLSGVPGRI-CEHF 91
Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
QE +LLVNI H LVP+H +L+ EK LL RY +KE+QLPRIQ
Sbjct: 92 QEQDLLVNITRHELVPKHVLLSPEEKAKLLARYRLKESQLPRIQ 135
[190][TOP]
>UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
RepID=B6SJT2_MAIZE
Length = 154
Score = 77.8 bits (190), Expect = 6e-13
Identities = 48/141 (34%), Positives = 72/141 (51%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263
E +L+ R+T ++ML DR Y V + EL T EF+ + E L T PS
Sbjct: 9 ESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSDPSS 68
Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443
++ V F V + ++ + EN+ R IL+ Q + R + EI +F ++ F
Sbjct: 69 KVKVVFCPPGPVKIAAIRLIYTEVKDENLARLILILQGKIMSPTRESIKEI-FRFKVDTF 127
Query: 444 QEAELLVNIKEHVLVPEHQVL 506
Q ELLVNI +HVL P+H+VL
Sbjct: 128 QITELLVNITKHVLKPKHEVL 148
[191][TOP]
>UniRef100_B4GWF6 GL16452 n=1 Tax=Drosophila persimilis RepID=B4GWF6_DROPE
Length = 126
Score = 77.0 bits (188), Expect = 9e-13
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242
E EI KL+ IRKTV +M DR YLV EL+ T +F + +G+ R DL + T
Sbjct: 8 EAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMVLT 67
Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRM 335
D P +++ VFFPEE KV V+T+K + NRM
Sbjct: 68 HADDPKNRMLVFFPEEPKVAVRTIKAFANRM 98
[192][TOP]
>UniRef100_UPI0000163400 DNA binding / DNA-directed RNA polymerase n=1 Tax=Arabidopsis
thaliana RepID=UPI0000163400
Length = 87
Score = 76.3 bits (186), Expect = 2e-12
Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Frame = +3
Query: 312 MKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK---FHLEVFQEAELLVNIKEHV 482
MK Y +++ S NVFRAILV Q + F+R + + + FH+EVFQE EL+VN+KEHV
Sbjct: 1 MKKYIDQLKSANVFRAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59
Query: 483 LVPEHQVLNDTEKKTLLER 539
VPEHQ L EK+ LER
Sbjct: 60 FVPEHQALTTEEKQKFLER 78
[193][TOP]
>UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QBA8_PENMQ
Length = 172
Score = 75.9 bits (185), Expect = 2e-12
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Frame = +3
Query: 246 KDKPSD--------QIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398
K +P+D QI+V F E+ VG K ++ + + ++ N I + +T+++P A
Sbjct: 19 KKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITRTAISPSAV 78
Query: 399 TCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
++ E FQE++LLVNI H LVP+H +L+ EK LLERY +KE+QLPRIQ
Sbjct: 79 RLLNSAIGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRLKESQLPRIQ 136
[194][TOP]
>UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1
Tax=Trypanosoma brucei RepID=Q388R5_9TRYP
Length = 219
Score = 73.9 bits (180), Expect = 8e-12
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Frame = +3
Query: 78 EEEIT--KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKD 251
+EE+ +++R+ +TV +M++DR Y V + T +F ++Y + RE I + +
Sbjct: 10 QEELVYDRMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGRRIYRERMT 66
Query: 252 KPSDQI--------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFART-- 401
P +++ VFF E +G++ MK Y N R I+V + +
Sbjct: 67 VPCERVGGTHRSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYV 124
Query: 402 -CVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
C++ + +++F E +L+VNI H LVP+H L D E K +LE ++++ LPRI
Sbjct: 125 DCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRI 182
[195][TOP]
>UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2
Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG
Length = 219
Score = 73.9 bits (180), Expect = 8e-12
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Frame = +3
Query: 78 EEEIT--KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKD 251
+EE+ +++R+ +TV +M++DR Y V + T +F ++Y + RE I + +
Sbjct: 10 QEELVYDRMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGKRIYRERMT 66
Query: 252 KPSDQI--------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFART-- 401
P +++ VFF E +G++ MK Y N R I+V + +
Sbjct: 67 VPCERVGGTHRSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYV 124
Query: 402 -CVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
C++ + +++F E +L+VNI H LVP+H L D E K +LE ++++ LPRI
Sbjct: 125 DCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRI 182
[196][TOP]
>UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE
Length = 224
Score = 73.6 bits (179), Expect = 1e-11
Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 19/181 (10%)
Frame = +3
Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELN---MTKHE----FKDKYGENMKREDLVINKTK 245
I K Y++ +T+ M++ R Y FE N + + E F+ KY ++ + +V K K
Sbjct: 14 IKKKYKVFQTLASMIRQRGY----FEANPPILIEDEPFELFEAKYRTDVLPQRVVCFK-K 68
Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA---------- 395
+D+ + F+ ++ + K Y + +++ V R I+V T PFA
Sbjct: 69 EDETDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTD--PFATKPQVVEKKA 126
Query: 396 RTCVSEIAS--KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPR 569
R + ++ S + E+F E +L+ ++ +H LVP+H +LND EK+ LL++Y + + QLPR
Sbjct: 127 RFFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPR 186
Query: 570 I 572
I
Sbjct: 187 I 187
[197][TOP]
>UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4VBP1_NOSCE
Length = 204
Score = 72.0 bits (175), Expect = 3e-11
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Frame = +3
Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK-KDKP 257
E+ K + R T+++M +R Y L+ D + D +N K
Sbjct: 3 EKKRKFFLCRNTLVEMCTERGYTTDQKVLSY------DNFIAQFPSCDKDVNSINFVCKN 56
Query: 258 SDQIY-VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434
+D + + F ++ K+G +++ S N++ ILV ++ ++ V+ S +
Sbjct: 57 ADNLVGIHFIDDEKIGKSSIEKVIETYKSINIYHLILVINQKMSSASQNIVN--VSDLKI 114
Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
E+F++ EL+ NI +HV VP H++LNDTEK ++LE+ + Q+P+I
Sbjct: 115 EIFKDEELMFNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKI 160
[198][TOP]
>UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE
Length = 223
Score = 71.6 bits (174), Expect = 4e-11
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 29/189 (15%)
Frame = +3
Query: 93 KLYRIRKTVMQMLKDRNY-------LVGD--FELNMTKHEFKDKYGENMKREDLVINKTK 245
K Y+I +T+ M++ R Y LV D FE+ F+ KY +N+ + + K
Sbjct: 16 KKYKIFQTLASMIRQRGYFESTPAKLVEDETFEI------FESKYRDNLPEKIVCF---K 66
Query: 246 KDKPSDQIYVFF--------PEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA-- 395
+D SD++ + F EEAK KT++ ++NR V R I++ T PFA
Sbjct: 67 RDDESDKLLIIFYTKQAPLTHEEAK---KTIQDFSNRQ----VKRLIMIFPTD--PFATK 117
Query: 396 --------RTCVSEIAS--KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545
R + ++ S + E+F E +L+ ++ +H LVP+H +LND EK+ LL++Y
Sbjct: 118 PQVVDKKARLFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYG 177
Query: 546 VKETQLPRI 572
+ + QLPRI
Sbjct: 178 LVDNQLPRI 186
[199][TOP]
>UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans
RepID=Q3LW39_BIGNA
Length = 204
Score = 70.1 bits (170), Expect = 1e-10
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 7/170 (4%)
Frame = +3
Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK--REDLVINKTKKDKPS 260
+ K Y ++ +ML R Y V LN+ +FK K E + + +IN + +
Sbjct: 6 LEKYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEKKRYFKSFKIINHL--NDTN 63
Query: 261 DQIYVFFPEEAKV-----GVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425
++I F+ + + G+K K TN NS I + + L+ +S
Sbjct: 64 NKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNS-----IIFITKRYLSKQTNIALSHFRRN 118
Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
F++E+F E E+L+N +H LVP+H +L K+ +L+ Y VK++QLP+I+
Sbjct: 119 FNIEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIK 168
[200][TOP]
>UniRef100_Q4YN15 DNA-directed RNA polymerase 2, putative (Fragment) n=1
Tax=Plasmodium berghei RepID=Q4YN15_PLABE
Length = 107
Score = 70.1 bits (170), Expect = 1e-10
Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254
E+ +T+ Y+ RKT +ML+DR Y++ E FK+ + EN K R + I + K+
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61
Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTP 389
+++I V+F +E K GVK ++ T +M+ +++ RAILV Q +LTP
Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTP 107
[201][TOP]
>UniRef100_Q8CI23 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Mus
musculus RepID=Q8CI23_MOUSE
Length = 96
Score = 68.9 bits (167), Expect = 3e-10
Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-----NMKREDLVINKT 242
EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 243 KKDKPSDQIYVFFPEEA 293
D P+DQ++VFFP EA
Sbjct: 64 HNDDPTDQMFVFFPGEA 80
[202][TOP]
>UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B0H1_VITVI
Length = 162
Score = 65.1 bits (157), Expect = 4e-09
Identities = 36/103 (34%), Positives = 59/103 (57%)
Frame = +3
Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446
I V F ++ ++ ++N E + R ILV Q+ + AR V E K +E FQ
Sbjct: 26 ILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFFQ 83
Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575
ELL+NI +HV VP+H++L+ EK+ L+ +Y +++ Q P +Q
Sbjct: 84 ITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQ 126
[203][TOP]
>UniRef100_UPI0001B7AB22 UPI0001B7AB22 related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7AB22
Length = 79
Score = 61.2 bits (147), Expect = 5e-08
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Frame = +3
Query: 78 EEEITKLYRIRKTVMQ--MLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVIN 236
EEE +L++IRKT+MQ + DR YLV EL+ T EFK ++G+ +R DL +
Sbjct: 4 EEETYRLWKIRKTIMQATLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 63
Query: 237 KTKKDKPSDQIYVFFP 284
D P+DQ++VFFP
Sbjct: 64 VAHNDDPTDQMFVFFP 79
[204][TOP]
>UniRef100_Q8SRJ3 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
RepID=Q8SRJ3_ENCCU
Length = 212
Score = 60.1 bits (144), Expect = 1e-07
Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 1/164 (0%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-KREDLVINKTKKDKPS 260
E+ L R T ++M++DR Y L + F ++Y + KR L D+P
Sbjct: 14 ELRALCLSRNTAIEMVRDRGYTTTQEVLALDG--FHERYPLALTKRSTLNFVCVNVDRP- 70
Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440
+ V F ++ K+G K + ++ +N+F IL+ +P + + + +F +E+
Sbjct: 71 --VAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIP-LTPRFSIEI 127
Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
F EL+ N +H VP H+VL+ E++++ + LPRI
Sbjct: 128 FLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRI 171
[205][TOP]
>UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
infantum RepID=A4HXV2_LEIIN
Length = 239
Score = 57.4 bits (137), Expect = 8e-07
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 30/193 (15%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215
E K +RI +T +M+ DR Y V + + EF ++Y E ++
Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPSSLGEFIERYVEEVEVTEDGGAAVGGGPNDA 69
Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
R VI + K ++ V+F + + +K +E R +
Sbjct: 70 PPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRVV 129
Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533
V + P R + + E+F+E EL VNI H LVP+H L++ E +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHSPLSEEELTDVL 189
Query: 534 ERYTVKETQLPRI 572
+ + ++ QLPRI
Sbjct: 190 QAHALELNQLPRI 202
[206][TOP]
>UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania
braziliensis RepID=A4H9I9_LEIBR
Length = 239
Score = 57.0 bits (136), Expect = 1e-06
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 30/193 (15%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215
E K +RI +T +M+ DR Y V + + EF ++Y E ++
Sbjct: 10 EFYKCFRILQTSAEMMSDRKYKVAQHVVPNSLGEFVERYVEEVEVTESGGAAAGGGFTDA 69
Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
R VI + K ++ V+F + + +K E R +
Sbjct: 70 PPRRKQVIRRDKMTLACEREVGEGRTLKAVVYFCPPNHLSSEVVKKIAEDALHEGYQRVV 129
Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533
V + P R + + E+F+E EL VNI H LVP+H L++ E K +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVL 189
Query: 534 ERYTVKETQLPRI 572
+ ++ QLPRI
Sbjct: 190 HAHALELHQLPRI 202
[207][TOP]
>UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major
RepID=Q4QDW4_LEIMA
Length = 239
Score = 56.2 bits (134), Expect = 2e-06
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 30/193 (15%)
Frame = +3
Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215
E K +RI +T +M+ DR Y V + + EF ++Y E ++
Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDA 69
Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362
R VI + K ++ V+F + + +K +E R +
Sbjct: 70 LPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIV 129
Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533
V + P R + + E+F+E EL VNI H LVP+H L++ E + +L
Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVL 189
Query: 534 ERYTVKETQLPRI 572
+ ++ QLPRI
Sbjct: 190 HAHALELNQLPRI 202
[208][TOP]
>UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1
Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH
Length = 202
Score = 56.2 bits (134), Expect = 2e-06
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 5/167 (2%)
Frame = +3
Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKH--EFKDKYGENMKREDLVINKTKKDKPS 260
+ L+ R T+++ML DR Y+ FE ++ +FK+ + + N T +
Sbjct: 6 VRDLWLARNTIIEMLTDRGYI---FEQSIFSQLEDFKNTFN---LEDSTSCNFTAIRNVN 59
Query: 261 DQIY---VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431
D++ + F K+ K ++T +++++ + IL+ L A + + S F
Sbjct: 60 DKVILCAIHFTSNDKLSKKQIETIITDYSNQSISKLILISCNKLNHAALAYLDK--SNFS 117
Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572
+E+F ++L N +H+LVP H++++ EK TLL LP I
Sbjct: 118 IELFLYKDILFNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPII 164