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[1][TOP] >UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXZ4_SOYBN Length = 206 Score = 298 bits (764), Expect = 2e-79 Identities = 147/170 (86%), Positives = 159/170 (93%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 MV SEEEI +LYRIRKTVMQML+DRN+LVGDFE+NM+KHEFK KYGE+MKREDLVINK+K Sbjct: 1 MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 KD DQIYVFFP+E KVGVKTMKTYTNRMNSENV+RAILV QT+LTPFARTC+SEI+SK Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 FHLEVFQEAELLVNIKEH LVPEHQVL D EKKTLLERYTVKETQLPRIQ Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQ 170 [2][TOP] >UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SVA4_SOYBN Length = 206 Score = 295 bits (755), Expect = 2e-78 Identities = 145/170 (85%), Positives = 158/170 (92%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 MV SEEE+ +LYRIRKTVMQML+DR +LVGDFE+NM+KHEFK KYGE+MKREDLVINK+K Sbjct: 1 MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 KD DQIYVFFP+E KVGVKTMKTYTNRMNSENV+RAILV QT+LTPFARTC+SEI+SK Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 FHLEVFQEAELLVNIKEH LVPEHQVL D EKKTLLERYTVKETQLPRIQ Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQ 170 [3][TOP] >UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PEL2_VITVI Length = 206 Score = 284 bits (726), Expect = 4e-75 Identities = 141/170 (82%), Positives = 153/170 (90%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 M SEEEI++L+RIRKTVMQMLKDR Y VGDFE+NMTKH+F K+GENMKREDLVINK K Sbjct: 1 MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 + SDQIYVFFPEE KVGVKTMKTYTNRM SENVFRAILV Q +LTPFARTC++EI++K Sbjct: 61 RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 FHLEVFQEAELLVNIKEHVLVPEHQVL EKKTLLERYTVKETQLPRIQ Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTVKETQLPRIQ 170 [4][TOP] >UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR Length = 206 Score = 281 bits (720), Expect = 2e-74 Identities = 139/170 (81%), Positives = 154/170 (90%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 M +EEEI +L RIRKTVMQMLKDR Y VGDFE+ MT+ +F+ KYG NMKREDLVINKTK Sbjct: 1 MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 ++ SDQIYVFFPEEAKVGVKTMKTYTNRM SENVFRAILV Q +LTPFARTC++EI++K Sbjct: 61 RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 FHLEVFQEAELLVNIKEHVLVPEHQVL++ EKKTLLERYTVKETQLPRIQ Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTVKETQLPRIQ 170 [5][TOP] >UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9RKM1_RICCO Length = 225 Score = 266 bits (680), Expect = 8e-70 Identities = 138/189 (73%), Positives = 153/189 (80%), Gaps = 19/189 (10%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 M SE+EI +L+RIR+TVMQMLKDR YLV D E+N+TKH+F KYG+NMKREDLVI+K+K Sbjct: 1 MTLSEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSK 60 Query: 246 KDK-------------------PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368 +D P QIYVFFPEE KVGVKTMKTYTNRM SENVFRAILV Sbjct: 61 RDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILV 120 Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 Q SLTPFARTC++EIASKFHLEVFQE+ELLVNIKEHVLVPEHQVL + EKKTLLERYTV Sbjct: 121 VQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTV 180 Query: 549 KETQLPRIQ 575 KETQLPRIQ Sbjct: 181 KETQLPRIQ 189 [6][TOP] >UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis thaliana RepID=O81098_ARATH Length = 205 Score = 259 bits (662), Expect = 1e-67 Identities = 127/169 (75%), Positives = 147/169 (86%) Frame = +3 Query: 69 VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248 + +EEE+ +LYRI+KT+MQML+DR Y + D EL MTK +F K+G+NMKREDLV K K+ Sbjct: 1 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60 Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428 + SDQ+Y+FFP+EAKVGVKTMK YTNRM SENVFRAILV Q +LTPFARTC+SEI+SKF Sbjct: 61 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120 Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 HLEVFQEAE+LVNIKEHVLVPEHQVL EKKTLLERYTVKETQLPRIQ Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQ 169 [7][TOP] >UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKG6_PHYPA Length = 208 Score = 241 bits (616), Expect = 2e-62 Identities = 116/166 (69%), Positives = 144/166 (86%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 +E+ +LYRIRKTVM+ML+DR+Y+V +FELN TK EF++KYG+ KREDLVI K K+ Sbjct: 7 DEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNN 66 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437 ++ I+VFFPEEAKVGVKT+KTY +RM +ENV RAILV Q +LTPFAR CVSE++SK+H+E Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVE 126 Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 VFQEAELLVNIK+HVLVP+H+VLN EK TLL+RYTVKETQLPR+Q Sbjct: 127 VFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQRYTVKETQLPRMQ 172 [8][TOP] >UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RWG5_PHYPA Length = 208 Score = 240 bits (613), Expect = 5e-62 Identities = 116/166 (69%), Positives = 143/166 (86%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 +E+ +LYRIRKTVM+ML+DR+Y+V D+EL ++K +F++KYG+ KREDLVI K ++ Sbjct: 7 DEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNN 66 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437 ++ I+VFFPEEAKVGVKT+KTY +RM +ENV RAILV Q +LTPFAR CVSE+ASK+HLE Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLE 126 Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 VFQEAELLVNIKEHVLVP H+VL EKKTLLERYTVKETQLPR+Q Sbjct: 127 VFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTVKETQLPRMQ 172 [9][TOP] >UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=A9NTD1_PICSI Length = 191 Score = 238 bits (608), Expect = 2e-61 Identities = 116/162 (71%), Positives = 138/162 (85%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 +E+ KL+RIR+TV+QML DR+YLVGDFE+N TK +F DK+GE+ K+EDLVINK K++ P Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437 S+QI+VFFPEEAKVGVK++KTY RM SE VFRAILV Q +LTPFAR V E + KFHLE Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLE 123 Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563 VFQEAELLVNIKEHVLVPE Q+L EKKTLLERYT+KETQ+ Sbjct: 124 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQV 165 [10][TOP] >UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis guineensis RepID=B3TLL2_ELAGV Length = 204 Score = 235 bits (599), Expect = 2e-60 Identities = 115/167 (68%), Positives = 140/167 (83%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 SE++I++L+RIR+TVMQML+DR YLV D E+NM K +F +K+GE +KREDLVINK KK+ Sbjct: 2 SEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKND 61 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434 P+DQIYVFFP +AKVGVK +K Y RM +ENV R ILV Q +LTPFAR ++E++ K+ L Sbjct: 62 PADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYML 121 Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 EVFQ+ ELLVNIKEHVLVPEHQVL EKKTLLERYT+KETQLPRIQ Sbjct: 122 EVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTLKETQLPRIQ 168 [11][TOP] >UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LR68_PICSI Length = 194 Score = 225 bits (574), Expect = 2e-57 Identities = 113/166 (68%), Positives = 134/166 (80%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 +E+ KL+RIR+TV+QML DR+YLVGDFE+N TK +F DK+GE+ K+EDLVINK K++ P Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437 S+QI+VFFPEEAKVGVK++KTY RM SE VFRAILV Q E + KFHLE Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQ-----------QEFSGKFHLE 112 Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 VFQEAELLVNIKEHVLVPE Q+L EKKTLLERYT+KETQLPR+Q Sbjct: 113 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTLKETQLPRMQ 158 [12][TOP] >UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ Length = 210 Score = 222 bits (565), Expect = 2e-56 Identities = 111/170 (65%), Positives = 135/170 (79%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 +V E + +L RIR+TVMQML+DR YLV + EL M + +F KYGE+ REDL+INK K Sbjct: 5 LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 K+ PSDQIYVFFP + KVG+K +K Y M +ENV RA+LV Q +LTPFAR+ + E+ K Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPK 124 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 HLE+FQEAELL+NIKEHVLVPEHQVLN+ EKKTLLERYT+KETQLPRIQ Sbjct: 125 IHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQ 174 [13][TOP] >UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9ETS9_ORYSJ Length = 210 Score = 221 bits (564), Expect = 2e-56 Identities = 111/170 (65%), Positives = 135/170 (79%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 +V E + +L RIR+TVMQML+DR YLV + EL M + +F KYGE+ REDL+INK K Sbjct: 5 LVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYK 64 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 K+ PSDQIYVFFP + KVG+K +K Y M +ENV RA+LV Q +LTPFAR+ + E+ K Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPK 124 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 HLE+FQEAELL+NIKEHVLVPEHQVLN+ EKKTLLERYT+KETQLPRIQ Sbjct: 125 IHLEIFQEAELLINIKEHVLVPEHQVLNNGEKKTLLERYTLKETQLPRIQ 174 [14][TOP] >UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays RepID=B4FU06_MAIZE Length = 210 Score = 219 bits (557), Expect = 2e-55 Identities = 108/170 (63%), Positives = 134/170 (78%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 +V E + +LYRIR+TVMQML+DR YLV D EL ++ +F K+GE+ REDL+INK K Sbjct: 5 LVTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYK 64 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 K+ PSDQIYVFFP + KVG+K +K Y M ENV RA+LV Q +LTPFA++ + E+ K Sbjct: 65 KNDPSDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPK 124 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 HLE+FQEAE+L+NIKEHVLVPEHQVL + EKKTLLERYT+KETQLPRIQ Sbjct: 125 IHLEIFQEAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTLKETQLPRIQ 174 [15][TOP] >UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FGM1_MAIZE Length = 206 Score = 211 bits (538), Expect = 2e-53 Identities = 101/170 (59%), Positives = 134/170 (78%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 M ++EI++L+RIR+TV +ML+DR Y V D ++ + +H+F ++YG ++R++L N TK Sbjct: 1 MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 + PSDQIYVFFP EAK GVKT++ Y +M +ENVF ILV Q +L+ FAR+ V E++ K Sbjct: 61 LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +HLEVFQEAELLVNIK+HVLVPEH +L +KKTLLERYTVKETQLPRIQ Sbjct: 121 YHLEVFQEAELLVNIKDHVLVPEHVLLTPEDKKTLLERYTVKETQLPRIQ 170 [16][TOP] >UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XUF8_ORYSJ Length = 205 Score = 210 bits (535), Expect = 5e-53 Identities = 100/167 (59%), Positives = 135/167 (80%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F ++G+ + R+ LV ++ KKD Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434 +DQIYVFFP++AK GVKT+++Y RM E+VF ILV Q +L+ FAR+ V E++ KFHL Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122 Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 EVFQEAELLVNIK+H LVPEH++L +KKTLLERYTVKETQLPRIQ Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQLPRIQ 169 [17][TOP] >UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=A3AV22_ORYSJ Length = 217 Score = 201 bits (512), Expect = 3e-50 Identities = 95/163 (58%), Positives = 131/163 (80%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F ++G+ + R+ LV ++ KKD Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434 +DQIYVFFP++AK GVKT+++Y RM E+VF ILV Q +L+ FAR+ V E++ KFHL Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122 Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563 EVFQEAELLVNIK+H LVPEH++L +KKTLLERYTVKETQ+ Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQI 165 [18][TOP] >UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7EQI7_ORYSJ Length = 167 Score = 201 bits (511), Expect = 3e-50 Identities = 95/163 (58%), Positives = 131/163 (80%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 SEEE ++L+RIR+TVMQML+DR YLV + ++++ + +F ++G+ + R+ LV ++ KKD Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434 +DQIYVFFP++AK GVKT+++Y RM E+VF ILV Q +L+ FAR+ V E++ KFHL Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122 Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQL 563 EVFQEAELLVNIK+H LVPEH++L +KKTLLERYTVKETQ+ Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTVKETQV 165 [19][TOP] >UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MXV4_9CHLO Length = 206 Score = 195 bits (495), Expect = 2e-48 Identities = 100/168 (59%), Positives = 125/168 (74%), Gaps = 1/168 (0%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 S E++TKL+RI KTV +ML R YLV EL K F++ YG++ KRE L + ++D Sbjct: 3 SSEKVTKLFRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDD 62 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK-FH 431 PS+ I+VFFPEE KVGVKT+K Y RM E+VFRAI+V Q SLTPFA+ + E AS+ F+ Sbjct: 63 PSENIFVFFPEEEKVGVKTIKEYAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFY 122 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E FQE ELLVNI EHVLVPEH +L+D EK+TLL RY VK+TQLPRIQ Sbjct: 123 IEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLARYKVKDTQLPRIQ 170 [20][TOP] >UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1 Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE Length = 206 Score = 193 bits (490), Expect = 9e-48 Identities = 89/165 (53%), Positives = 126/165 (76%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260 + +T+L+R+R+T +QML DR YLV E+ TK +F+D++GEN +++DL I ++D P+ Sbjct: 2 DNLTRLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPT 61 Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 +QI+VFFPEE KVGVKT+K RM E V RAI+V + TPFA++ + ++ K+H+E Sbjct: 62 EQIFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEH 121 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 F E+ELLVNI EHVLVPEH++L+ EK+TLL+RY +KETQLPRIQ Sbjct: 122 FLESELLVNITEHVLVPEHRILSPDEKRTLLDRYKIKETQLPRIQ 166 [21][TOP] >UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RWP8_OSTLU Length = 205 Score = 182 bits (461), Expect = 2e-44 Identities = 94/168 (55%), Positives = 120/168 (71%), Gaps = 1/168 (0%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 S ++ T+L+R+RKT+ +ML R YLV EL F + +GE KRE L I K+D Sbjct: 2 SNDKRTRLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDD 61 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFH 431 PS+ I+VFFP+E KVGVKT+K RM ENVFRAI+V Q SLTPFA+ + E KF+ Sbjct: 62 PSENIFVFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKFY 121 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E FQE ELLVNI +HVLVPEH +L+D +K+TLL+RY VK+TQLPRIQ Sbjct: 122 IEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLDRYKVKDTQLPRIQ 169 [22][TOP] >UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01A87_OSTTA Length = 1124 Score = 181 bits (460), Expect = 3e-44 Identities = 93/168 (55%), Positives = 119/168 (70%), Gaps = 1/168 (0%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 S + +L+R+RKT+ +ML R YLV EL F +++GE KR+ L I +KD Sbjct: 921 SSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKDD 980 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFH 431 PS+ I+VFFP+E KVGVKT+K RM ENVFRAI+V Q SLTPFA+ + E KF+ Sbjct: 981 PSENIFVFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKFY 1040 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E FQE ELLVNI +HVLVPEH +L+D +K+TLLERY VK+TQLPRIQ Sbjct: 1041 IEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLERYKVKDTQLPRIQ 1088 [23][TOP] >UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO Length = 204 Score = 180 bits (457), Expect = 6e-44 Identities = 93/166 (56%), Positives = 121/166 (72%), Gaps = 1/166 (0%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260 E+ T+L+RIRKTV +ML R YLV EL+ K F +++GE+ +R+ L + ++ P+ Sbjct: 3 EKKTRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPT 62 Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI-ASKFHLE 437 I+VFFP+E KVGVKT+K Y RM E V RAI+V Q SLTPFAR + E A KF++E Sbjct: 63 QHIFVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIE 122 Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 FQEAELLVNI +HVLVPEH +L+D +K+ LL+RY VKETQLPRIQ Sbjct: 123 QFQEAELLVNITDHVLVPEHILLSDEQKRVLLDRYKVKETQLPRIQ 168 [24][TOP] >UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona intestinalis RepID=UPI000180C3C9 Length = 210 Score = 172 bits (436), Expect = 2e-41 Identities = 91/171 (53%), Positives = 116/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E +L+RIRKTVMQ+ DR YLV EL+ + EFK+++G+ R+DL I Sbjct: 4 EAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVGVKT+KTY RM EN+ RAI+V Q S+TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQEENIQRAIIVVQQSMTPSAKQSLFDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E ELL+NI EH LVPEH VL EK LL RY +K+ QLPRIQ Sbjct: 124 KYILEQFLEQELLINITEHELVPEHVVLTPEEKSELLTRYKLKDHQLPRIQ 174 [25][TOP] >UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E78B Length = 210 Score = 171 bits (434), Expect = 3e-41 Identities = 86/171 (50%), Positives = 118/171 (69%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++ Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP++ K+G+KT+KTY RM EN+ RAI+V Q +TP A+ +S++A Sbjct: 64 HNDDPTDQMFVFFPDDPKIGIKTIKTYCQRMQEENIHRAIIVVQQGMTPSAKQSLSDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL+RY +KE QL RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLQRYKLKENQLMRIQ 174 [26][TOP] >UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia vitripennis RepID=UPI00015B5456 Length = 210 Score = 168 bits (426), Expect = 2e-40 Identities = 86/171 (50%), Positives = 116/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++ Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP+E K+G+KT+KTY RM E + RAI+V Q+ +TP A+ + ++A Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH VL EK+ LL RY +KE QL RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174 [27][TOP] >UniRef100_UPI000051A7F2 PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera RepID=UPI000051A7F2 Length = 179 Score = 167 bits (424), Expect = 4e-40 Identities = 86/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++ Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP+E K+G+KT+KTY RM E + RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH VL EK+ LL RY +KE QL RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174 [28][TOP] >UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera RepID=UPI00003C0CAC Length = 210 Score = 167 bits (424), Expect = 4e-40 Identities = 86/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++ Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP+E K+G+KT+KTY RM E + RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH VL EK+ LL RY +KE QL RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKLKENQLMRIQ 174 [29][TOP] >UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS Length = 210 Score = 167 bits (423), Expect = 5e-40 Identities = 86/171 (50%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKT+MQ+ DR YLV EL+ T +FKD +G+ R DL++ Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQ 174 [30][TOP] >UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri RepID=A6N9W6_ORNPR Length = 210 Score = 167 bits (423), Expect = 5e-40 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKT+MQ+ DR YLV EL+ T +FK ++G+ R DL++ Sbjct: 4 EAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP+E K+G+KT+KTY RM EN+ RAI+V Q +TP A+ ++++A Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALTDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH VL EK LL RY +KE L RIQ Sbjct: 124 KYILEYFLESELLINITEHELVPEHVVLTPEEKAELLARYKLKENHLMRIQ 174 [31][TOP] >UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZQF0_BRAFL Length = 210 Score = 166 bits (420), Expect = 1e-39 Identities = 85/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E+E KL+RIRKT+MQ+ DR YLV EL+ +FKD++G+ R+DLV+ Sbjct: 4 EQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFF +E K+G+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFADEPKIGIKTIKMYCQRMQEENISRAIIVVQMGMTPSAKQALVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ EK LL RY +KE QLPRIQ Sbjct: 124 KYILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRLKEHQLPRIQ 174 [32][TOP] >UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN Length = 210 Score = 166 bits (420), Expect = 1e-39 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++ Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSRYKLKENMLMRIQ 174 [33][TOP] >UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI Length = 210 Score = 166 bits (419), Expect = 2e-39 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++ Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ Sbjct: 124 KYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSRYKLKENMLMRIQ 174 [34][TOP] >UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME Length = 210 Score = 166 bits (419), Expect = 2e-39 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++ Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQ 174 [35][TOP] >UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae RepID=B0X7A5_CULQU Length = 210 Score = 166 bits (419), Expect = 2e-39 Identities = 84/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 + E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++ Sbjct: 4 DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP+E K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKLKENMLMRIQ 174 [36][TOP] >UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587A08 Length = 210 Score = 165 bits (418), Expect = 2e-39 Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E +L+R+R+T+MQ+ DR YLV EL+ T +FK+++G+ R+DL + Sbjct: 4 EAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+ Q +TP A+T + ++A Sbjct: 64 HNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F EAELL+NI EH VPEH V+ EK LL RY +K+ QLPRIQ Sbjct: 124 KYILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKLKDHQLPRIQ 174 [37][TOP] >UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus mordax RepID=C1BIS3_OSMMO Length = 210 Score = 165 bits (418), Expect = 2e-39 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLTRYKLKESQLPRIQ 174 [38][TOP] >UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum RepID=Q5DDM1_SCHJA Length = 206 Score = 165 bits (418), Expect = 2e-39 Identities = 83/170 (48%), Positives = 117/170 (68%), Gaps = 1/170 (0%) Frame = +3 Query: 69 VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248 + + E KL+RIRKT+++M KDR YLV EL + +FK G+ R+DL++ + Sbjct: 1 MLDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHE 60 Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ-TSLTPFARTCVSEIASK 425 + P+D +YVFFPEE KV +KT++ Y N+M ++ +RAILV Q LTP A+T ++E++ K Sbjct: 61 EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCK 120 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 + LE F E EL+VNI EH LVP+H VL EKK LLERY +KE QLP++Q Sbjct: 121 YTLECFFENELMVNITEHQLVPQHDVLTQEEKKELLERYRLKENQLPKMQ 170 [39][TOP] >UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI Length = 210 Score = 165 bits (418), Expect = 2e-39 Identities = 87/171 (50%), Positives = 115/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKTVMQ+ DR YLV EL+ T +FK+++G+ R DL++ Sbjct: 4 ECESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE K+G+KT+KTY RM E + RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCQRMQEETITRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH VL EK+ LL RY +KE QL RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKQELLCRYKLKENQLMRIQ 174 [40][TOP] >UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG Length = 210 Score = 165 bits (417), Expect = 3e-39 Identities = 85/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQ 174 [41][TOP] >UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Anoplopoma fimbria RepID=C3KI95_9PERC Length = 210 Score = 165 bits (417), Expect = 3e-39 Identities = 85/171 (49%), Positives = 115/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V++ E LL RY +KE+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMSKEEVVELLARYKLKESQLPRIQ 174 [42][TOP] >UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA Length = 208 Score = 165 bits (417), Expect = 3e-39 Identities = 83/167 (49%), Positives = 116/167 (69%), Gaps = 1/167 (0%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 + E KL+RIRKT+++M KDR YLV EL + +FK G+ R+DL++ ++ P Sbjct: 6 DSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDP 65 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ-TSLTPFARTCVSEIASKFHL 434 +D +YVFFPEE KV +KT++ Y N+M ++ +RAILV Q LTP A+T ++E++ K+ L Sbjct: 66 ADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTL 125 Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 E F E EL+VNI EH LVP+H VL EKK LLERY +KE QLP++Q Sbjct: 126 ECFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRLKENQLPKMQ 172 [43][TOP] >UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO Length = 210 Score = 165 bits (417), Expect = 3e-39 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++ Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ +K+ LL RY +KE L RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQ 174 [44][TOP] >UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR Length = 210 Score = 165 bits (417), Expect = 3e-39 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKT+MQ+ DR YLV EL+ T +FK+ +G+ R DL++ Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ +K+ LL RY +KE L RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKLKENMLMRIQ 174 [45][TOP] >UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL Length = 211 Score = 165 bits (417), Expect = 3e-39 Identities = 86/175 (49%), Positives = 115/175 (65%), Gaps = 5/175 (2%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230 M E E +L+RIRKTV+QM+ DR YLV EL+ FK +YG+ R DL Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60 Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410 I D P+DQ++VFFPE+AK+G+KT+K +M +N+ RAI+V QT +TP A+ + Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 ++A K+ LE F EAEL+VNI EH LVPEH V+ EK LL RY +K++QLPRIQ Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQ 175 [46][TOP] >UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio rerio RepID=Q6DEG5_DANRE Length = 210 Score = 164 bits (415), Expect = 4e-39 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EF+ ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQ 174 [47][TOP] >UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Rana catesbeiana RepID=C1C3Q7_RANCA Length = 210 Score = 163 bits (413), Expect = 8e-39 Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQ 174 [48][TOP] >UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3 Tax=Murinae RepID=RPAB1_MOUSE Length = 210 Score = 163 bits (413), Expect = 8e-39 Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E+QLPRIQ Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQ 174 [49][TOP] >UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E isoform 1 n=1 Tax=Canis lupus familiaris RepID=UPI00005A3E0E Length = 208 Score = 163 bits (412), Expect = 1e-38 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174 [50][TOP] >UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio RepID=UPI000056951D Length = 211 Score = 163 bits (412), Expect = 1e-38 Identities = 87/172 (50%), Positives = 115/172 (66%), Gaps = 6/172 (3%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKTVMQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFP-EEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA 419 D P+DQ++VFFP EE KVG+KT+K Y RM EN+ RA++V QT +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPVEELKVGIKTIKMYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMA 123 Query: 420 SKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KETQLPRIQ Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKETQLPRIQ 175 [51][TOP] >UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA polymerases I, II, and III subunit ABC1) (DNA-directed RNA polymerase II subunit E) (RPB5) (DNA-directed RNA polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB19D6 Length = 212 Score = 163 bits (412), Expect = 1e-38 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174 [52][TOP] >UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Esox lucius RepID=C1BZT4_ESOLU Length = 210 Score = 163 bits (412), Expect = 1e-38 Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA +V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174 [53][TOP] >UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XGH1_CAEBR Length = 211 Score = 163 bits (412), Expect = 1e-38 Identities = 84/175 (48%), Positives = 114/175 (65%), Gaps = 5/175 (2%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230 M E E +L+RIRKTV+QM+ DR YLV EL+ FK+ +G+ R DL Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60 Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410 I D P+DQ++VFFPE+ K+G+KT+K +M +N+ RAI+V QT +TP A+ + Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 ++A K+ LE F EAEL+VNI EH LVPEH V+ EK LL RY +K++QLPRIQ Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQ 175 [54][TOP] >UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D56A05 Length = 210 Score = 162 bits (411), Expect = 1e-38 Identities = 85/171 (49%), Positives = 112/171 (65%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+RIRKTVMQ+ DR YLV EL+ T +FK++ G+ R DL I Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP+E K+G+K +KTY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+NI EH LVPEH V+ EK+ LL RY +KE L RIQ Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTRYKLKENMLMRIQ 174 [55][TOP] >UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2 Tax=Neognathae RepID=B5FX59_TAEGU Length = 210 Score = 162 bits (411), Expect = 1e-38 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174 [56][TOP] >UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus RepID=Q28HF5_XENTR Length = 210 Score = 162 bits (411), Expect = 1e-38 Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKLRESQLPRIQ 174 [57][TOP] >UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Salmo salar RepID=B5X8S7_SALSA Length = 210 Score = 162 bits (411), Expect = 1e-38 Identities = 84/171 (49%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA +V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174 [58][TOP] >UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C1Q1_THAPS Length = 226 Score = 162 bits (410), Expect = 2e-38 Identities = 84/164 (51%), Positives = 111/164 (67%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E ++L+R+ KTV ML R Y+V MT +F ++GE RE L I K D ++ Sbjct: 27 EASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETN 86 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 Q++VFFPE+ KVGVK +K T+RM ENV AILV + +TPFA+ V E++ F LE F Sbjct: 87 QLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHF 146 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +EAELLV+I EH LVPEH VL+ EK+ LL+RY ++ETQLPRIQ Sbjct: 147 KEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRLRETQLPRIQ 190 [59][TOP] >UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E n=1 Tax=Macaca mulatta RepID=UPI0000D9E960 Length = 278 Score = 162 bits (409), Expect = 2e-38 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EE+ +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174 [60][TOP] >UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri RepID=C6K8L9_CAEBE Length = 211 Score = 162 bits (409), Expect = 2e-38 Identities = 83/175 (47%), Positives = 114/175 (65%), Gaps = 5/175 (2%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLV 230 M E E +L+RIRKTV+QM+ DR YLV EL+ FK+ +G+ R DL Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLT 60 Query: 231 INKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410 I D P+DQ++VFFP++ K+G+KT+K +M +N+ RAI+V QT +TP A+ + Sbjct: 61 ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 ++A K+ LE F EAEL+VNI EH LVPEH V+ EK LL RY +K++QLPRIQ Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKLKDSQLPRIQ 175 [61][TOP] >UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Pongo abelii RepID=RPAB1_PONAB Length = 210 Score = 162 bits (409), Expect = 2e-38 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EF+ ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174 [62][TOP] >UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2 Tax=Euteleostei RepID=B5X957_SALSA Length = 210 Score = 161 bits (408), Expect = 3e-38 Identities = 83/171 (48%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 +EE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA +V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY +KE+QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKLKESQLPRIQ 174 [63][TOP] >UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caligus clemensi RepID=C1C1G9_9MAXI Length = 210 Score = 161 bits (407), Expect = 4e-38 Identities = 82/171 (47%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+++RKTVM + DR YLV EL+ T+ +FK ++G+ R DL I Sbjct: 4 ESETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPE+ K+GVK ++TY RM EN+ RAI+V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEDPKIGVKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+N+ EH LVPEH V+ EKK LL++Y +KE QL RIQ Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQ 174 [64][TOP] >UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Homo sapiens RepID=RPAB1_HUMAN Length = 210 Score = 161 bits (407), Expect = 4e-38 Identities = 83/171 (48%), Positives = 112/171 (65%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK + G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174 [65][TOP] >UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Bos taurus RepID=RPAB1_BOVIN Length = 210 Score = 159 bits (401), Expect = 2e-37 Identities = 82/171 (47%), Positives = 111/171 (64%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV L+ T EFK ++G +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F + ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 174 [66][TOP] >UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE Length = 213 Score = 157 bits (397), Expect = 5e-37 Identities = 83/166 (50%), Positives = 113/166 (68%), Gaps = 5/166 (3%) Frame = +3 Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRE----DLVINKTKKDKPS 260 +L+R+RKT+ ++L+DR YLV LN TK F ++ E +R+ DL+I +K+D PS Sbjct: 12 RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71 Query: 261 DQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437 DQ+ VFFP+E K VGVK ++T +M + + RAILV Q LT FA+T + E + + +E Sbjct: 72 DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131 Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 VF E+EL+VNI H LVPEH+ L EK+ LLERY VKE QLPRIQ Sbjct: 132 VFNESELVVNITHHELVPEHKPLTAEEKRLLLERYKVKENQLPRIQ 177 [67][TOP] >UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE Length = 213 Score = 157 bits (396), Expect = 7e-37 Identities = 82/171 (47%), Positives = 115/171 (67%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRE----DLVINKTK 245 ++ +L+R+RKT+ ++L+DR Y+V LN TK F ++ E +R+ DL+I +K Sbjct: 7 DDTTIRLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSK 66 Query: 246 KDKPSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 +D PSDQ+ VFFP+E K VGVK ++T +M + + RAILV Q LT FA+T + E + Sbjct: 67 QDDPSDQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASP 126 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 + +EVF E+EL+VNI H LVPEH+ L EK+ LLERY VKE QLPRIQ Sbjct: 127 QMEIEVFNESELVVNITHHELVPEHKPLTPEEKRLLLERYKVKENQLPRIQ 177 [68][TOP] >UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI Length = 210 Score = 156 bits (395), Expect = 9e-37 Identities = 79/171 (46%), Positives = 114/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E KL+++RKTVM + DR YLV EL+ T +FK ++G+ R DL I Sbjct: 4 EAENYKLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP++ K+G+K ++TY RM EN+ RAI++ Q+ +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPDDPKIGIKHIRTYCKRMQEENITRAIILVQSGMTPSAKQSLMDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+ELL+N+ EH LVPEH V+ EKK LL++Y +KE QL RIQ Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKLKENQLMRIQ 174 [69][TOP] >UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FSY0_PHATR Length = 228 Score = 156 bits (394), Expect = 1e-36 Identities = 75/164 (45%), Positives = 112/164 (68%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+R+ +T+ ML R Y+V +T FK+++GE RE+L I K D ++ Sbjct: 29 EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 Q+++FFPE+ KVGVK +K YT+RM +E+V AI++ + +TPFA+ V E++ F +E F Sbjct: 89 QLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHF 148 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E+ELLV+I +H LVP HQVL EK LL+RY +K++QLPRIQ Sbjct: 149 KESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQ 192 [70][TOP] >UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5E0K0_DROPS Length = 210 Score = 155 bits (393), Expect = 2e-36 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 EEE+ K++RIRKTV+QM DR YLV EL+ T F++ +G+ R D+ + Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFP+E KVG+K +K Y RM E+++RAI+V Q S+TP AR + E+A Sbjct: 64 HNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F EAEL+ NI E+ VPEH V+ EK+ LL RY +KE+ L RIQ Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLKESMLMRIQ 174 [71][TOP] >UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE Length = 210 Score = 155 bits (393), Expect = 2e-36 Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 EEE+ K++RIRKTV+QM DR YLV EL+ T F++ +G+ R D+ + Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+K +K Y RM E+++RAI+V Q S+TP AR + E+A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F EAEL+ NI E+ VPEH V+ EK+ LL RY ++E+ L RIQ Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKLRESMLMRIQ 174 [72][TOP] >UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S3Q9_TRIAD Length = 210 Score = 155 bits (391), Expect = 3e-36 Identities = 80/171 (46%), Positives = 111/171 (64%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK--- 248 EEE KL+RIRKTVMQM DR Y+V EL+ T +F +++ M V Sbjct: 4 EEEAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVH 63 Query: 249 --DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P++Q++VFFP+E KVG+ T+K Y RM EN+ RAI++ Q+ +TP A+ + ++A Sbjct: 64 HIDDPTEQLFVFFPDEPKVGINTIKKYCQRMQRENINRAIIIIQSGMTPTAKQSLIDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 K+ LE F E+EL++NI EH LVP+H V++ EK LL RY +KE QLPRIQ Sbjct: 124 KYTLESFMESELMINITEHHLVPKHIVMSPEEKAELLARYKLKEHQLPRIQ 174 [73][TOP] >UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa n=1 Tax=Pan troglodytes RepID=UPI0000E24E5A Length = 230 Score = 153 bits (386), Expect = 1e-35 Identities = 78/161 (48%), Positives = 105/161 (65%), Gaps = 5/161 (3%) Frame = +3 Query: 108 RKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKKDKPSDQIY 272 RKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + D P+DQ++ Sbjct: 34 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 93 Query: 273 VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEA 452 VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A K+ LE F + Sbjct: 94 VFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQ 153 Query: 453 ELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 ELL+NI EH LVPEH V+ E LL RY ++E QLPRIQ Sbjct: 154 ELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ 194 [74][TOP] >UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE Length = 207 Score = 150 bits (379), Expect = 7e-35 Identities = 81/166 (48%), Positives = 110/166 (66%), Gaps = 5/166 (3%) Frame = +3 Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKTKKDKP 257 K +RIRKTVMQ+ N L+ EL+ T +FK+++G+ R DL I D P Sbjct: 9 KFWRIRKTVMQVC---NGLILRDELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDP 65 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437 +DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A K+ LE Sbjct: 66 TDQMFVFFPEEPKVGIKTIKQYCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILE 125 Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 F EAEL++NI EH LVPEH ++ EK+ LL RY +KE QLPRIQ Sbjct: 126 QFVEAELMINITEHELVPEHVLMTPDEKQELLLRYKLKEHQLPRIQ 171 [75][TOP] >UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NU15_COPC7 Length = 273 Score = 148 bits (373), Expect = 3e-34 Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKTKKD 251 +E +L+++ KT+ +++KDR + V D E+NM+ F+ YG NM R L + Sbjct: 70 DETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRL 129 Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 PSDQI+V+F EE VGVK M+ M + + R I++ ++T AR +S +AS + Sbjct: 130 NPSDQIFVYFTEEPNVGVKAMRKLLGIMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 189 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 LE F EA+LLVNI H LVP H+VL+ EKKTLLERY +K+TQLPRIQ Sbjct: 190 LEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLERYRLKDTQLPRIQ 237 [76][TOP] >UniRef100_UPI00005A3E0F PREDICTED: similar to DNA-directed RNA polymerase II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1) isoform 2 n=1 Tax=Canis lupus familiaris RepID=UPI00005A3E0F Length = 162 Score = 146 bits (368), Expect = 1e-33 Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 5/159 (3%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539 K+ LE F + ELL+NI EH LVPEH V+ E LL R Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162 [77][TOP] >UniRef100_Q8R0H0 Polr2e protein n=1 Tax=Mus musculus RepID=Q8R0H0_MOUSE Length = 162 Score = 146 bits (368), Expect = 1e-33 Identities = 75/159 (47%), Positives = 103/159 (64%), Gaps = 5/159 (3%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539 K+ LE F + ELL+NI EH LVPEH V+ E LL R Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162 [78][TOP] >UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D9Y7_LACBS Length = 208 Score = 146 bits (368), Expect = 1e-33 Identities = 74/168 (44%), Positives = 107/168 (63%), Gaps = 3/168 (1%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN---MKREDLVINKTKKD 251 +E KL+++ +T+ +++KDR +LV D E++M F+ Y N + R L T + Sbjct: 5 DETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRT 64 Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 +DQI+VFF EE VGVKTM+ + +++ R I+V ++TP AR + +A ++ Sbjct: 65 NSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYR 124 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 LE F EA+LLVNI H LVP H VL+ EKKTLLE+Y +KETQLPRIQ Sbjct: 125 LEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEKYRLKETQLPRIQ 172 [79][TOP] >UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1 Tax=Dictyostelium discoideum RepID=RPAB1_DICDI Length = 197 Score = 144 bits (364), Expect = 4e-33 Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 2/167 (1%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPS 260 E+I +L +IRKTV+QML DR Y++ +E + F + RE+L + KKD P+ Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPT 54 Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA--SKFHL 434 D IYVFFP+ KVGV +K Y + M RAI+V Q ++TPFA+ ++E + K L Sbjct: 55 DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITL 114 Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 E F EAELLVNI H LVP+H +L EK LL RY +KE+QLPRIQ Sbjct: 115 EQFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQ 161 [80][TOP] >UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH Length = 210 Score = 141 bits (356), Expect = 3e-32 Identities = 73/169 (43%), Positives = 112/169 (66%), Gaps = 4/169 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKR---EDLVINKTKK 248 ++EIT+++++R+TV+QML+DR Y + + +LN+ + EF ++ + M + E L ++ K Sbjct: 5 DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64 Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTN-RMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 P+D+IYVF+PE KVGV +K +M + V R I+V ++T AR VSE+ Sbjct: 65 PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 +EVF+EAEL+ NI EH LV ++ VL+D KK LL YTV++TQLPRI Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRI 173 [81][TOP] >UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5DLP1_DROPS Length = 320 Score = 138 bits (347), Expect = 3e-31 Identities = 72/170 (42%), Positives = 106/170 (62%), Gaps = 5/170 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E E+ KL+ IRKT+ +M DR YLV EL+ T +F + +G+ R DL + + Sbjct: 4 EAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTMLLS 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P +++ VFFPEE KV VKT+K Y +RM E + RAILV + LTP A+ + +A Sbjct: 64 HADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEGEGIHRAILVVRDCLTPPAKQSIMAMAP 123 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 + +E F E+EL +N+ +H LVP+H VL++ EKK L Y +KE+Q+ R+ Sbjct: 124 LYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRCYRLKESQMMRM 173 [82][TOP] >UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO Length = 205 Score = 135 bits (340), Expect = 2e-30 Identities = 75/168 (44%), Positives = 105/168 (62%), Gaps = 2/168 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-MKREDLVINKTKKDK 254 E+ +L+R RKT ML+DR Y+V E N + ++F ++ EN R +++ + K Sbjct: 2 EDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVD 61 Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 P +++ V+F +E K GVK ++ T RM N+ RAILV Q LT FAR +SE A + Sbjct: 62 PDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHI 121 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E F E+ELLVNI +H LVP+H L + EK+ LL RY VKE QLPRIQ Sbjct: 122 IENFMESELLVNITKHELVPKHVPLTNDEKQNLLNRYRVKEIQLPRIQ 169 [83][TOP] >UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SWJ6_PHYPA Length = 211 Score = 134 bits (337), Expect = 5e-30 Identities = 72/159 (45%), Positives = 103/159 (64%), Gaps = 3/159 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 + + T LY++RK V++M++D +Y+V D EL +T +F +KY E+ K+EDL+I K K Sbjct: 7 DRQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNN 66 Query: 258 SDQIYVFFPE---EAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428 ++ P+ + +VG+KT+KT RM ENV RA+ V Q +TP ++ +S A K+ Sbjct: 67 AEH----GPKTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQHITPLSKQYISRKAQKY 122 Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 HLEVF E E LVNI E LVP H++L EK TLLERYT Sbjct: 123 HLEVFLEPEFLVNITECYLVPLHEILTPEEKNTLLERYT 161 [84][TOP] >UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L6X3_PLAKH Length = 205 Score = 134 bits (336), Expect = 6e-30 Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254 E+ IT+ Y+ RKT +ML+DR Y++ E FK+++ EN K R + I + K+ Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61 Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 S++I V+F +E K GVK ++ T +M+ +++ RAILV Q +LTPFAR + E A + Sbjct: 62 ESNKIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E F + ELLVNI +H LVP H L EK+ LL+RY +KE +LPRIQ Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQ 169 [85][TOP] >UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LN15_9ALVE Length = 168 Score = 132 bits (333), Expect = 1e-29 Identities = 72/142 (50%), Positives = 95/142 (66%), Gaps = 5/142 (3%) Frame = +3 Query: 165 LNMTKHEFKDKYGENMKRE----DLVINKTKKDKPSDQIYVFFPEEAK-VGVKTMKTYTN 329 LN TK F ++ E +R+ DL+I +K+D PSDQ+ VFFP+E K VGVK ++T Sbjct: 2 LNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLAL 61 Query: 330 RMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLN 509 +M + + RAILV Q LT FA+T + E + + +EVF E+EL+VNI H LVPEH+ L Sbjct: 62 KMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLT 121 Query: 510 DTEKKTLLERYTVKETQLPRIQ 575 EK+ LLERY VKE QLPRIQ Sbjct: 122 AEEKRLLLERYKVKENQLPRIQ 143 [86][TOP] >UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1 Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI Length = 205 Score = 132 bits (333), Expect = 1e-29 Identities = 72/168 (42%), Positives = 107/168 (63%), Gaps = 2/168 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254 E+ IT+ Y+ RKT +ML+DR Y++ E FK+++ EN K R + I + K+ Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61 Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 +++I V+F +E K GVK ++ T +M+ +++ RAILV Q +LTPFAR + E A + Sbjct: 62 ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E F + ELLVNI +H LVP H L EK+ LL+RY +KE +LPRIQ Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKIKENKLPRIQ 169 [87][TOP] >UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE Length = 221 Score = 131 bits (330), Expect = 3e-29 Identities = 63/180 (35%), Positives = 111/180 (61%), Gaps = 14/180 (7%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--------------ENM 212 + E+ +L+R+ +TV +M++DR YL+ D+E+N++ EFKD++G ++ Sbjct: 5 ANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSS 64 Query: 213 KREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPF 392 R ++ + ++ +D+I+V+F + V +MKT+ M+ R I++ ++P Sbjct: 65 SRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPA 124 Query: 393 ARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 A+ + E+ S++HLE F E++LLVNI +H LVP+H V+ EK L++RY +KETQLPRI Sbjct: 125 AKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRLKETQLPRI 184 [88][TOP] >UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8ID59_PLAF7 Length = 205 Score = 130 bits (326), Expect = 9e-29 Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-MKREDLVINKTKKDK 254 E+ +T+ Y+ RKT +ML+DR Y++ E FK+ + +N +R + I+ T K+ Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61 Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 +++I V+F +E K GVK ++ T RM +++ RAILV Q LTPFAR + E A + Sbjct: 62 SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E F + ELLVNI +H LVP H L EKK LL+RY + E +LPRIQ Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKIMENKLPRIQ 169 [89][TOP] >UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7APR4_BABBO Length = 205 Score = 128 bits (322), Expect = 3e-28 Identities = 71/168 (42%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKD 251 ++E +L+R R+T +ML+DR Y + + E T EFK +Y + ++ + L++ K D Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKMLLVASLKTD 61 Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 K + + F E K GVK ++ T +M ++ RAILV Q LTPFA+ + E A + Sbjct: 62 KDAKLLVYFADETKKTGVKPIRELTEKMEDHDIHRAILVTQNVLTPFAKDAILEAAPRNI 121 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E F E ELLVNI +H LVP+H L EK+TLL+RY VKE+Q+PRIQ Sbjct: 122 IENFLETELLVNITKHELVPKHIPLTADEKQTLLQRYKVKESQIPRIQ 169 [90][TOP] >UniRef100_B5XGU7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Salmo salar RepID=B5XGU7_SALSA Length = 159 Score = 128 bits (321), Expect = 4e-28 Identities = 64/139 (46%), Positives = 91/139 (65%), Gaps = 5/139 (3%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 +EE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA +V Q +TP A+ + ++A Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123 Query: 423 KFHLEVFQEAELLVNIKEH 479 K+ LE F + ELL+NI EH Sbjct: 124 KYILEQFLQQELLINITEH 142 [91][TOP] >UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4 RepID=UPI00004E3EE0 Length = 181 Score = 126 bits (317), Expect = 1e-27 Identities = 70/152 (46%), Positives = 92/152 (60%), Gaps = 2/152 (1%) Frame = +3 Query: 126 MLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQIYVFFPEEAKVGV 305 ML DR Y++ +E + F + RE+L + KKD P+D IYVFFP+ KVGV Sbjct: 1 MLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53 Query: 306 KTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA--SKFHLEVFQEAELLVNIKEH 479 +K Y + M RAI+V Q ++TPFA+ ++E + K LE F EAELLVNI H Sbjct: 54 TQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHH 113 Query: 480 VLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 LVP+H +L EK LL RY +KE+QLPRIQ Sbjct: 114 QLVPKHILLTKEEKLELLTRYKMKESQLPRIQ 145 [92][TOP] >UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JZQ6_SCHJY Length = 211 Score = 126 bits (317), Expect = 1e-27 Identities = 70/171 (40%), Positives = 102/171 (59%), Gaps = 5/171 (2%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKK 248 E I K++R+ KTV Q++ DR Y V EL +T +F+ + G N+ R L K Sbjct: 6 ERNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFY-AKP 64 Query: 249 DKPSDQ--IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIAS 422 SD+ IYV F +E VG+K M+T+ + + N IL+ ++TP A +S + Sbjct: 65 PPGSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIISTVTG 124 Query: 423 KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +F +E FQE++L+VNI H LVP+H +L EKK LL+RY ++ETQLPRIQ Sbjct: 125 QFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKLRETQLPRIQ 175 [93][TOP] >UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FEX9_MAIZE Length = 127 Score = 125 bits (315), Expect = 2e-27 Identities = 61/91 (67%), Positives = 74/91 (81%) Frame = +3 Query: 303 VKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHV 482 +K +K Y M ENV RA+LV Q +LTPFA++ + E+ K HLE+FQEAE+L+NIKEHV Sbjct: 1 MKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHV 60 Query: 483 LVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 LVPEHQVL + EKKTLLERYT+KETQLPRIQ Sbjct: 61 LVPEHQVLTNEEKKTLLERYTLKETQLPRIQ 91 [94][TOP] >UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO Length = 210 Score = 125 bits (315), Expect = 2e-27 Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 4/174 (2%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVIN 236 M E+ I +++R KT Q++ DR Y V EL++T +FK + G N+ R L Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60 Query: 237 -KTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSE 413 K D IY+ F +E VG+K M+T+ + + N IL+ S+TP A ++ Sbjct: 61 AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIAT 120 Query: 414 IASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 + +F +E FQE++L+VNI H LVP+H +L+ EKK LL+RY ++ETQLPRIQ Sbjct: 121 VTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQ 174 [95][TOP] >UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AE06_9CRYT Length = 205 Score = 125 bits (314), Expect = 2e-27 Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 2/164 (1%) Frame = +3 Query: 90 TKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKDKPSD 263 T+ +R R+T+ +ML+DR Y+V + + FK+++ + ++ L++ K+D+ Sbjct: 6 TRFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQDQTKR 65 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 I F E K GVK ++ +M+ N+ RAIL+ Q LT A+ + + A K ++E F Sbjct: 66 IICYFADESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESF 125 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 E ELLVNI H LVP+H +L+D EK LLERY VKETQLPRIQ Sbjct: 126 LENELLVNITRHELVPKHVLLSDEEKSQLLERYKVKETQLPRIQ 169 [96][TOP] >UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia theta RepID=Q98RN7_GUITH Length = 214 Score = 122 bits (305), Expect = 3e-26 Identities = 66/174 (37%), Positives = 111/174 (63%), Gaps = 9/174 (5%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDF--ELNMTKHEFKDKYGEN--MKREDLVINKTK 245 ++ I L+++R+TV+QM++DR Y+V D +LN+++ F++ Y +N + R+ L I + + Sbjct: 4 DKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPR 63 Query: 246 KDKPSDQIYVFFPEEAK----VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSE 413 D P ++I + F E K +GVK+++ + R+ +E R +++ LTP A+ VS Sbjct: 64 WDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSS 123 Query: 414 IASKFHL-EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 I S L E F E EL+VNI H+LVP+H++L+ E K+LLERY++K LP+I Sbjct: 124 INSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSIKFDHLPKI 177 [97][TOP] >UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva RepID=Q4N141_THEPA Length = 205 Score = 122 bits (305), Expect = 3e-26 Identities = 69/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254 ++E +L+R R+T +ML+DR Y + E T EFK +Y + K R +++ +++ Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTA 61 Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 +++ V+F +E K GVK ++ T RM ++ RAILV Q LTPFA+ + E K Sbjct: 62 SENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E F E ELLVNI +H LVP+H L EK+ LL++Y VKE+Q+PRIQ Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQ 169 [98][TOP] >UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1 Tax=Theileria annulata RepID=Q4U8E3_THEAN Length = 205 Score = 120 bits (301), Expect = 7e-26 Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 2/168 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254 ++E +L+R R+T +ML+DR Y + E T EFK +Y K R +++ + + Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTA 61 Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 +++ V+F +E K GVK ++ T RM ++ RAILV Q LTPFA+ + E K Sbjct: 62 AENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E F E ELLVNI +H LVP+H L EK+ LL++Y VKE+Q+PRIQ Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKYKVKESQIPRIQ 169 [99][TOP] >UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida albicans RepID=C4YG42_CANAL Length = 214 Score = 120 bits (300), Expect = 1e-25 Identities = 67/176 (38%), Positives = 105/176 (59%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKT- 242 ++ +++L+R KTV +M++DR Y + EL+MT EF+ K ++M +R+ + T Sbjct: 4 TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63 Query: 243 -----KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 +K + ++V F +EA VG+KTM+ + + +N I + Q S+TP A + Sbjct: 64 TAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLI 123 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 + S +E+FQE +L+VNI H LVP+H LN EKK LL RY +KE+QLPRIQ Sbjct: 124 PTV-SPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRLKESQLPRIQ 178 [100][TOP] >UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC Length = 214 Score = 119 bits (298), Expect = 2e-25 Identities = 66/176 (37%), Positives = 105/176 (59%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKT- 242 ++ +++L+R KTV +M++DR Y + EL+MT EF+ K ++M +R+ + T Sbjct: 4 TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63 Query: 243 -----KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 +K + ++V F +E+ VG+KTM+ + + +N I + Q S+TP A + Sbjct: 64 TGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLI 123 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 + S +E+FQE +L+VNI H LVP+H LN EKK LL RY +KE+QLPRIQ Sbjct: 124 PTV-SPATIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRLKESQLPRIQ 178 [101][TOP] >UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium RepID=Q5CNJ4_CRYHO Length = 205 Score = 117 bits (292), Expect = 8e-25 Identities = 62/163 (38%), Positives = 98/163 (60%), Gaps = 2/163 (1%) Frame = +3 Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG--ENMKREDLVINKTKKDKPSDQ 266 + +R R+T+ +ML+DR Y+V + FK+++ + ++ L++ ++D+ Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 66 Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446 I F E K GVK ++ +M+ + RAIL+ Q LT A+ + + A K ++E F Sbjct: 67 ICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFL 126 Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 E ELLVNI +H LVP+H +L+D EK LL+RY +KETQLPRIQ Sbjct: 127 ENELLVNITKHELVPKHILLSDDEKLQLLDRYKIKETQLPRIQ 169 [102][TOP] >UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DNB3_LACTC Length = 215 Score = 117 bits (292), Expect = 8e-25 Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKR---------EDL 227 +E +++L+R KTV +M++DR Y + E++++ +FK KY ++M R + Sbjct: 5 NERNVSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64 Query: 228 VINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 V +K ++V F +EA VG+KTMK + ++ +N I V Q +TP A + Sbjct: 65 VEEALEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNGVTPSAMKLL 124 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +A +E F EA L+VNI H LVP+H L+D EKK LL RY +KE+QLPRIQ Sbjct: 125 PSVAPAT-IETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRLKESQLPRIQ 179 [103][TOP] >UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE Length = 210 Score = 116 bits (291), Expect = 1e-24 Identities = 65/169 (38%), Positives = 102/169 (60%), Gaps = 3/169 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 E E +LY++ T+ QM DR + V +NMT + + YGE R++L K D Sbjct: 4 EAERYRLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGE-YPRKELSFPVQKVDDD 62 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK---F 428 +D ++VFFPE V V +K+ +R+ S+N+ RAI+V Q + P A++ + + + + Sbjct: 63 NDGLFVFFPESPDVKVAAIKSLYDRLKSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPY 122 Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E F EAEL+ N+ H LVP H++L ++EK+ LLERY V E +LP+IQ Sbjct: 123 IVETFAEAELVYNVTRHHLVPHHEILKESEKQQLLERYCVSEDRLPQIQ 171 [104][TOP] >UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEH4_VANPO Length = 215 Score = 116 bits (291), Expect = 1e-24 Identities = 68/176 (38%), Positives = 104/176 (59%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI------- 233 SE I++L+R +TV +M++DR Y + E++++ +FK KY ++M R + Sbjct: 5 SERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANP 64 Query: 234 -NKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 +T + P+ ++V F +E VGVKTMK + + +N I V QT++TP A V Sbjct: 65 TEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 I +E F EA L+VNI H LVP+H L++ EKK LL++Y +KE+QLPRIQ Sbjct: 125 PSIPPAT-IETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRLKESQLPRIQ 179 [105][TOP] >UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP Length = 216 Score = 114 bits (286), Expect = 4e-24 Identities = 62/173 (35%), Positives = 112/173 (64%), Gaps = 9/173 (5%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLV--GDFELNMTKHEFKDKYGENMK--REDLVINKTKK 248 +EI L++IR+T++QML+DR+Y+V +L M++ F+ K+ +N + R +L IN++K Sbjct: 6 KEILNLFKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKW 65 Query: 249 DKPSDQIYVFF----PEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI 416 + + +I V F E++ +GVK+++ + R+ + +I+V LT A+ ++ I Sbjct: 66 LEENMRILVVFIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSI 125 Query: 417 AS-KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 S +E F E+EL+VNI EH LVP+H+++++ E + L +RY+++E QLPRI Sbjct: 126 NSLDDKIEYFSESELIVNITEHNLVPKHEIISEEEARCLFKRYSIRENQLPRI 178 [106][TOP] >UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MBX4_CANTT Length = 214 Score = 114 bits (285), Expect = 5e-24 Identities = 61/176 (34%), Positives = 105/176 (59%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVINKTK 245 ++ I++L+R KTV +M++DR Y + E++MT EF+ K ++M +R+ + Sbjct: 4 TDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQAQP 63 Query: 246 KDKPSDQ------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 + ++ ++V F +E+ VG+KTM+ + + +N + + Q S+TP A + Sbjct: 64 TGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSANKLI 123 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 ++ +E+FQE++L+VNI H LVP+H L+ EK LLERY +KE+QLPRIQ Sbjct: 124 PTVSPSV-IEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRLKESQLPRIQ 178 [107][TOP] >UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DR69_ZYGRC Length = 215 Score = 114 bits (285), Expect = 5e-24 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 +E I++L+R KTV +M+KDR Y + E+ + +FK KY ++M R + + + Sbjct: 5 NERNISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNP 64 Query: 255 PSDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 + I +V F +E VGVKTMKT+ + +N I V Q ++TP A V Sbjct: 65 TEESIAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNVTPSAMKLV 124 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 I +E F EA L+VNI H LVP+H ++ EK+ LL+RY +KE+QLPRIQ Sbjct: 125 PSIPPAT-IETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRLKESQLPRIQ 179 [108][TOP] >UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Kluyveromyces lactis RepID=RPAB1_KLULA Length = 215 Score = 114 bits (285), Expect = 5e-24 Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 9/175 (5%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 E I++L+R KTV +M++DR Y + E++++ +FK KY ++M + + + + Sbjct: 6 ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPT 65 Query: 258 SDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410 + I +V F +EA VGVKTMK + + +N I + Q+ +TP A + Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125 Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 A +E F EA L+VNI H LVP+H L++ EKK LL+RY +KE+QLPRIQ Sbjct: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQ 179 [109][TOP] >UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LUR5_ARATH Length = 178 Score = 114 bits (284), Expect = 7e-24 Identities = 70/172 (40%), Positives = 95/172 (55%), Gaps = 3/172 (1%) Frame = +3 Query: 66 MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK 245 M +EEI +L+ +++T+MQMLKDR YL+ E+ MT EF +KYG+NMKR L+++K + Sbjct: 1 MALMDEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLR 60 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTC---VSEI 416 K M T + RAILV Q + F+R + + Sbjct: 61 K---------------------MMT---------MIRAILVVQ-DIKAFSRQALVFLGAV 89 Query: 417 ASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 FH+EVFQE EL+VN+KEHV VPEHQ L EK+ LER + LPRI Sbjct: 90 YPIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLERKRTRFVVLPRI 141 [110][TOP] >UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Eremothecium gossypii RepID=RPAB1_ASHGO Length = 215 Score = 114 bits (284), Expect = 7e-24 Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI------- 233 +E +++L+R +TV +M++DR Y + E++++ +FK KY ++M R + Sbjct: 5 NERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64 Query: 234 -NKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 +T K P+ ++V F +E VG+KTMK + + +N I + Q +TP A + Sbjct: 65 TEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLL 124 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +A +E F E L+VNI H LVP+H L+D EKK LL+RY +KE+QLPRIQ Sbjct: 125 PSVAPAT-IETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQ 179 [111][TOP] >UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA Length = 215 Score = 113 bits (283), Expect = 9e-24 Identities = 65/175 (37%), Positives = 101/175 (57%), Gaps = 9/175 (5%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKP 257 E I++L+R +TV +M++DR Y + E++++ +FK KY ++M + + + + Sbjct: 6 ERGISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPT 65 Query: 258 SDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410 + I +V F +EA VGVKTMK + + +N I + Q+ +TP A + Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSANKILP 125 Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 A +E F EA L+VNI H LVP+H L+D EKK LL+RY +KE+QLPRIQ Sbjct: 126 TAAPAV-IETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRLKESQLPRIQ 179 [112][TOP] >UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) = Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QAL5_ASPNC Length = 235 Score = 113 bits (282), Expect = 1e-23 Identities = 73/193 (37%), Positives = 105/193 (54%), Gaps = 24/193 (12%) Frame = +3 Query: 69 VFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK- 245 V ++ E+T+L+R +TV +ML DR Y V + E+ M HEFK KY + + D NK K Sbjct: 10 VDADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDR--NKMKI 67 Query: 246 -----------------KDKPSDQ-----IYV-FFPEEAKVGVKTMKTYTNRMNSENVFR 356 K P+ Q IYV F P+ VG K ++T+ + ++ N Sbjct: 68 SARPTEAMQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNHFVDENNFHT 127 Query: 357 AILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLE 536 + + QT ++P A +S + + E FQE +LLVNI H LVP+H +L+ EK LLE Sbjct: 128 GVFITQTPISPSAVRLLSSMPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPDEKARLLE 186 Query: 537 RYTVKETQLPRIQ 575 RY +KE+QLPRIQ Sbjct: 187 RYRLKESQLPRIQ 199 [113][TOP] >UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST Length = 213 Score = 112 bits (281), Expect = 2e-23 Identities = 66/175 (37%), Positives = 105/175 (60%), Gaps = 9/175 (5%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVI-----NKT 242 + +++L+R KTV +M++DR Y + E++M+ EF+ K ++M R + N T Sbjct: 4 DRTVSRLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQANPT 63 Query: 243 KK--DKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410 + DK D ++V F +EA VG+KTM+ + ++ +N I + Q S+TP A + Sbjct: 64 AESLDKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLIP 123 Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 + S +E FQE +L+VNI H LVP+H L+ EKK LL+RY +KE+QLPR+Q Sbjct: 124 TV-SPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRLKESQLPRVQ 177 [114][TOP] >UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5 Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST Length = 215 Score = 112 bits (281), Expect = 2e-23 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 +E I++L+R +TV +M+KDR Y + E+ + +FK KY ++M R + + + Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANP 64 Query: 255 PSDQI---------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 + I +V F +E VGVKTMKT+ + +N I V Q ++TP A V Sbjct: 65 TEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLV 124 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 I +E F EA L+VNI H LVP+H L+ EK+ LL+RY +KE+QLPRIQ Sbjct: 125 PSIPPAT-IETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQ 179 [115][TOP] >UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Candida glabrata RepID=RPAB1_CANGA Length = 215 Score = 112 bits (280), Expect = 2e-23 Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 ++ I++L+R +TV +M++DR Y + EL++T +FK KY ++M R + + + Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64 Query: 255 PSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 + ++V F +E VGVKTMKT+ + + I + Q ++TP A V Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 I +E F EA L+VNI H LVP+H LN+ EK LL+RY +KE+QLPRIQ Sbjct: 125 PSIPPAT-IETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQ 179 [116][TOP] >UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative n=1 Tax=Entamoeba dispar SAW760 RepID=B0EA74_ENTDI Length = 204 Score = 112 bits (279), Expect = 3e-23 Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKKD 251 E +T +YR KTV++ML+DR Y+ + + N T FK+++ GE + ++L I K++ Sbjct: 2 ENVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61 Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 +D I VFF E + + Y + SE+V RAI+V + L+ + + + + Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQ-PREVK 120 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 E E EL+VN+ HVLVP+H +L+ EK+ LL++Y VKE+QLPR+ Sbjct: 121 WEALLEDELIVNVTHHVLVPQHILLSPEEKQELLKKYQVKESQLPRL 167 [117][TOP] >UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4LW54_ENTHI Length = 204 Score = 111 bits (278), Expect = 3e-23 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 3/167 (1%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKKD 251 E +T +YR KTV++ML+DR Y+ + + N T FK+++ GE + ++L I K++ Sbjct: 2 ESVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61 Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 +D I VFF E + + Y + SE+V RAI+V + L+ + + + + Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQ-PREVK 120 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 E E EL+VN+ H+LVP+H +L+ EK+ LL++Y VKE+QLPR+ Sbjct: 121 WEALLEDELIVNVTHHILVPQHILLSPEEKQELLKKYQVKESQLPRL 167 [118][TOP] >UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA Length = 214 Score = 110 bits (276), Expect = 6e-23 Identities = 63/176 (35%), Positives = 102/176 (57%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------REDL 227 ++ I++L+R KTV +M++DR Y + E++M+ EF+ + ++M + + Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63 Query: 228 VINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 +K ++V F +EA VG+KTM+ + ++ +N I + Q+S+TP A + Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSANKLI 123 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 + S +E FQE +L+VNI H LVP+H L EKK LLERY +KE+QLPRIQ Sbjct: 124 PTV-SPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQ 178 [119][TOP] >UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG Length = 214 Score = 110 bits (274), Expect = 1e-22 Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 9/172 (5%) Frame = +3 Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKK- 248 I++L+R +TV +M DR Y + E++ + EF+ K ++M K + N T + Sbjct: 8 ISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLANPTPEA 67 Query: 249 -DKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIA 419 +K SD ++V F +E VG+KTM+ + R+ +N I + Q ++TP A + ++ Sbjct: 68 LEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITPSANKMIPTVS 127 Query: 420 SKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +E FQE++L+VNI H LVP+H L+D EK LL+RY +KE+QLPRIQ Sbjct: 128 PAI-IETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKLKESQLPRIQ 178 [120][TOP] >UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Yarrowia lipolytica RepID=RPAB1_YARLI Length = 212 Score = 110 bits (274), Expect = 1e-22 Identities = 65/176 (36%), Positives = 102/176 (57%), Gaps = 9/176 (5%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFK----DKYGENMKREDLVI--- 233 S ++ KL+++ +T +++KDR Y + D E+N++ +F D G+ +K++ + Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASP 61 Query: 234 --NKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCV 407 +K I+V F EEA V VKTM+ + ++ ILV + ++TP A + Sbjct: 62 SPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLI 121 Query: 408 SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +A ++ FQE +LLVNI +HVLVP H L+ EKK LLERY +KE+QLPRIQ Sbjct: 122 PSVAPAT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQ 176 [121][TOP] >UniRef100_A8QAC6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QAC6_MALGO Length = 159 Score = 109 bits (273), Expect = 1e-22 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN--MKREDLVINKTKKD 251 + E +L+R+ +T+ +++ DR Y V + ELN+ FK + N + R + KD Sbjct: 4 DRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQHKD 63 Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 KP ++++VF+ E VGVKTM+ + N + +N+ R I++ +T A+ + + + Sbjct: 64 KPEERLFVFYSTERNVGVKTMRQFINILEEKNITRGIIIWSDKMTSAAKKVIEAMRLQLV 123 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539 LE F+EA LLVNI H LVP+H+VL EKK LL R Sbjct: 124 LEDFEEAFLLVNITHHQLVPKHEVLTPDEKKELLHR 159 [122][TOP] >UniRef100_UPI000194DF40 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194DF40 Length = 119 Score = 107 bits (268), Expect = 5e-22 Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 5/112 (4%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398 D P+DQ++VFFPEE KVG+KT+K Y RM EN+ RA++V Q +TP A+ Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAK 115 [123][TOP] >UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1 Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH Length = 218 Score = 107 bits (266), Expect = 9e-22 Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 1/167 (0%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 S E K Y R+T M+ML+DR Y V D ++N++ +F+ YGE+ + L I+ + Sbjct: 17 SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 S +I V F V V M+ + ++ EN+ ILV Q+ +T A V + F Sbjct: 77 SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FK 134 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 +E+F+ +LLVN+ +HVL P+HQVLND EK++LL++++++E QLPR+ Sbjct: 135 VELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRL 181 [124][TOP] >UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis thaliana RepID=Q9M1J2_ARATH Length = 222 Score = 107 bits (266), Expect = 9e-22 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 1/167 (0%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 S EE + Y R+ +QML+DR Y V D ++N++ H+F+ YGE + L I+ + Sbjct: 21 SSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 + ++ + F + V V +++ + ++ E + ILV Q +T A + + F Sbjct: 81 STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--FK 138 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 +E+FQ +LLVNI +H L P+HQVLND EK TLL++++++E QLPRI Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRI 185 [125][TOP] >UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HAG0_PENCW Length = 234 Score = 106 bits (264), Expect = 1e-21 Identities = 68/189 (35%), Positives = 102/189 (53%), Gaps = 22/189 (11%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245 +E E+T+L+R +TV ++L DR Y V D EL + +F+ KY + + D K + Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARP 70 Query: 246 -------------KDKPSDQ-----IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368 K P+ Q IYV F P+ + VG K ++ + + ++ N I + Sbjct: 71 TETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130 Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 QT ++P A +S + + E FQE +LLVNI H LVP+H +L+ EK LLERY + Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERYRL 189 Query: 549 KETQLPRIQ 575 KE+QLPRIQ Sbjct: 190 KESQLPRIQ 198 [126][TOP] >UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=A2ZBC5_ORYSI Length = 227 Score = 105 bits (263), Expect = 2e-21 Identities = 58/163 (35%), Positives = 94/163 (57%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+ R+T M+ML+DR Y V + E+ T EF+ + E E L T PS Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIERLAFTTTLVSDPSK 88 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 ++ + F V + T++ + EN+ R +L+ Q+ + AR + EI KF +++F Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 Q +LLVNI +HVL P+H+VL+ +K LL+ Y V+++QLPR+ Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190 [127][TOP] >UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1 Tax=Arabidopsis thaliana RepID=Q8L947_ARATH Length = 222 Score = 105 bits (262), Expect = 2e-21 Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 1/167 (0%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 S EE + Y R+ +Q+L+DR Y V D ++N++ H+F+ YGE + L I+ + Sbjct: 21 SSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 + ++ + F + V V +++ + ++ E + ILV Q +T A + + F Sbjct: 81 STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--FK 138 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 +E+FQ +LLVNI +H L P+HQVLND EK TLL++++++E QLPRI Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRI 185 [128][TOP] >UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2RAP1_ORYSJ Length = 227 Score = 105 bits (262), Expect = 2e-21 Identities = 58/163 (35%), Positives = 94/163 (57%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+ R+T M+ML+DR Y V + E+ T EF+ + E E L T PS Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 ++ + F V + T++ + EN+ R +L+ Q+ + AR + EI KF +++F Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 Q +LLVNI +HVL P+H+VL+ +K LL+ Y V+++QLPR+ Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190 [129][TOP] >UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein, expressed n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXY2_ORYSJ Length = 335 Score = 105 bits (262), Expect = 2e-21 Identities = 58/163 (35%), Positives = 94/163 (57%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+ R+T M+ML+DR Y V + E+ T EF+ + E E L T PS Sbjct: 137 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 196 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 ++ + F V + T++ + EN+ R +L+ Q+ + AR + EI KF +++F Sbjct: 197 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 255 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 Q +LLVNI +HVL P+H+VL+ +K LL+ Y V+++QLPR+ Sbjct: 256 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 298 [130][TOP] >UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ Length = 227 Score = 105 bits (262), Expect = 2e-21 Identities = 58/163 (35%), Positives = 94/163 (57%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+ R+T M+ML+DR Y V + E+ T EF+ + E E L T PS Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 ++ + F V + T++ + EN+ R +L+ Q+ + AR + EI KF +++F Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 Q +LLVNI +HVL P+H+VL+ +K LL+ Y V+++QLPR+ Sbjct: 148 QATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNVEDSQLPRM 190 [131][TOP] >UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces dermatitidis RepID=C5G7M7_AJEDR Length = 236 Score = 105 bits (262), Expect = 2e-21 Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 22/189 (11%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224 ++ E+T+L+R +TV +ML DR Y V + E+ + EF+ +Y + + D Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72 Query: 225 --------LVINKTKKDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368 + T K P + IYV F P+ VG K ++ + + ++ +N I + Sbjct: 73 SQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGIFI 132 Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY + Sbjct: 133 SQTPISPSAIRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191 Query: 549 KETQLPRIQ 575 KE+QLPRIQ Sbjct: 192 KESQLPRIQ 200 [132][TOP] >UniRef100_Q4P7S7 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P7S7_USTMA Length = 554 Score = 105 bits (261), Expect = 3e-21 Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 3/157 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVINKTKK 248 + E +L+R+ +T+ ++++DR Y V D E+++ FK +Y G ++ R L Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHG 63 Query: 249 DKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKF 428 + + +++VF+ + VGVKTM+ + + M ++ R I++ +T AR + + F Sbjct: 64 EHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123 Query: 429 HLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539 HLE F+EA LLVNI H LVP+H+ L EKK LL+R Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160 [133][TOP] >UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4 Length = 287 Score = 105 bits (261), Expect = 3e-21 Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Frame = +3 Query: 96 LYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKR-----EDLVINKTKKD 251 L IR + + D Y + D E+NMT EFK K GE ++ +K Sbjct: 85 LQTIRTKIWKSSGDIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKF 144 Query: 252 KPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 ++V F +EA VG+KTM+ + ++ +N I + QTS+TP A + + S Sbjct: 145 PEMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSITPSANKLIPTV-SPAT 203 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 +EVFQE++L+VNI H LVP+H L+ EKK LL+RY +KE+QLPRIQ Sbjct: 204 IEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRYRLKESQLPRIQ 251 [134][TOP] >UniRef100_B7T1F2 RNA polymerase II (Fragment) n=1 Tax=Oreochromis niloticus RepID=B7T1F2_ORENI Length = 108 Score = 104 bits (260), Expect = 4e-21 Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 5/107 (4%) Frame = +3 Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVINKTKKDKP 257 +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + D P Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398 +DQ++VFFPEE KVG+KT+K Y RM EN+ RAI+V Q +TP A+ Sbjct: 61 TDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAK 107 [135][TOP] >UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9ST46_RICCO Length = 238 Score = 104 bits (260), Expect = 4e-21 Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 1/164 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E + Y R+TV++ML+DR Y V E++++ EF+ +G N + L + T PS Sbjct: 40 ETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSK 99 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 ++ V F + V T++ ++ N +++ ILV Q +T A V KF +E+ Sbjct: 100 RMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLF--KFKVEM 157 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 FQ +LLVNI +HVL P+HQVL D EK+ LL+ Y ++E QLPR+ Sbjct: 158 FQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCIEEKQLPRL 201 [136][TOP] >UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN Length = 236 Score = 104 bits (260), Expect = 4e-21 Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245 ++ E+T+L+R +TV +ML DR Y V + E+ ++ EF+ +Y + + D NK K Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDR--NKMKISA 70 Query: 246 -----------------KDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAI 362 K P + IYV F + VG K ++ + + ++ +N I Sbjct: 71 RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130 Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542 V QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 543 TVKETQLPRIQ 575 +KE+QLPRIQ Sbjct: 190 RLKESQLPRIQ 200 [137][TOP] >UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1FYH2_PARBD Length = 236 Score = 104 bits (259), Expect = 6e-21 Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245 ++ E+TKL+R +TV +ML DR Y V + E+ + EF+ +Y + + D NK K Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDR--NKMKISA 70 Query: 246 -----------------KDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAI 362 K P + IYV F + + VG K ++ + + ++ +N I Sbjct: 71 RPSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGI 130 Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542 + QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY Sbjct: 131 FISQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189 Query: 543 TVKETQLPRIQ 575 +KE+QLPRIQ Sbjct: 190 RLKESQLPRIQ 200 [138][TOP] >UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR Length = 216 Score = 103 bits (258), Expect = 7e-21 Identities = 60/164 (36%), Positives = 99/164 (60%), Gaps = 1/164 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E + Y R+TV++MLKDR Y V E++++ +F+ YG+N E L + T K PS Sbjct: 18 ESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSK 77 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNS-ENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 ++ V F V V ++ T ++ +++ ILV Q ++T A + KF +E+ Sbjct: 78 RMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLF--KFKIEI 135 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 FQ +LLVNI +H+L P+HQVL++ K+ LL++Y+++E QLPR+ Sbjct: 136 FQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSIEEKQLPRL 179 [139][TOP] >UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1GUJ0_PARBA Length = 236 Score = 103 bits (258), Expect = 7e-21 Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 24/191 (12%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245 ++ E+TKL+R +TV +ML DR Y V + E+ + EF+ +Y + + D NK K Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70 Query: 246 -----------------KDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAI 362 K P + IYV F + + VG K ++ + + ++ +N I Sbjct: 71 RPSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGI 130 Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542 + QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY Sbjct: 131 FISQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189 Query: 543 TVKETQLPRIQ 575 +KE+QLPRIQ Sbjct: 190 RLKESQLPRIQ 200 [140][TOP] >UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus RepID=C0NL28_AJECG Length = 236 Score = 103 bits (258), Expect = 7e-21 Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 24/191 (12%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK--- 245 ++ E+T+L+R +TV +ML DR Y V + E+ + EF+ +Y + + D NK K Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70 Query: 246 -----------------KDKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAI 362 K P + IYV F + VG K ++ + + ++ +N I Sbjct: 71 RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130 Query: 363 LVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERY 542 V QT ++P A ++ I +F E FQE ELLVNI H LVP+H +L+ EKK LL+RY Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 543 TVKETQLPRIQ 575 +KE+QLPRIQ Sbjct: 190 RLKESQLPRIQ 200 [141][TOP] >UniRef100_B7Q5X9 RNA polymerase, 25-kDa subunit, putative n=1 Tax=Ixodes scapularis RepID=B7Q5X9_IXOSC Length = 91 Score = 102 bits (254), Expect = 2e-20 Identities = 49/91 (53%), Positives = 65/91 (71%) Frame = +3 Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446 ++VFFP+E K+G+KT+KTY RM EN+ RAI+V Q +TP A+ + ++A K+ LE F Sbjct: 1 MFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFL 60 Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539 E+ELL+NI EH LVPEH VL EK LL R Sbjct: 61 ESELLINITEHELVPEHVVLTPEEKAELLAR 91 [142][TOP] >UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2 Tax=Emericella nidulans RepID=C8VQY1_EMENI Length = 235 Score = 102 bits (254), Expect = 2e-20 Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 22/189 (11%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY-GEN--MKREDLVINK-- 239 +E E +++R +TV +ML+DR Y V + E+ + EFK KY GE RE L I Sbjct: 12 AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARP 71 Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368 T PS++ IY+ F P+++ +G K ++T+ + ++ N I + Sbjct: 72 TEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFI 131 Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 +T ++P A +S I + E FQE +LLVNI H LVP+H +L+ EK LL+RY + Sbjct: 132 TKTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRYRL 190 Query: 549 KETQLPRIQ 575 KE+QLPRIQ Sbjct: 191 KESQLPRIQ 199 [143][TOP] >UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR Length = 248 Score = 102 bits (253), Expect = 3e-20 Identities = 58/164 (35%), Positives = 96/164 (58%), Gaps = 1/164 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E + Y R+TV++MLKDR Y + E+ ++ +F+ +G++ + L + T PS Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 +I V F V V ++ ++ N E++ IL+ Q +T A V+ ++ F +E+ Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 FQ +LLVN +HVL P+HQVL D +KK LL++Y ++E QLPR+ Sbjct: 168 FQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRM 211 [144][TOP] >UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides RepID=C5PAC2_COCP7 Length = 236 Score = 100 bits (250), Expect = 6e-20 Identities = 66/189 (34%), Positives = 104/189 (55%), Gaps = 22/189 (11%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224 ++ E+T+L+R +TV +ML DR Y V + E+N+ EF+ KY + + D Sbjct: 13 ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARP 72 Query: 225 ---LVINKTKKDKPSDQ--------IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILV 368 ++ T P+ IYV F +A+ VG K ++ + + ++ +N I + Sbjct: 73 SQTMIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFI 132 Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 Q+ ++P A ++ I +F E F E ELLVNI H LVP+H +L+ EKK LL+RY + Sbjct: 133 TQSPISPSAIRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191 Query: 549 KETQLPRIQ 575 KE+QLPRIQ Sbjct: 192 KESQLPRIQ 200 [145][TOP] >UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus RepID=A1CP51_ASPCL Length = 234 Score = 100 bits (250), Expect = 6e-20 Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 22/189 (11%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINK----- 239 ++ E+T+L+R +TV +ML DR Y V + E+ + EF+ KY + + D K Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARP 70 Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368 T P++ IYV F + + VG K ++ + + ++ N + + Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFI 130 Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 QT ++P A +S I + E FQE +LLVNI H LVP+H +L+ EKK LL+RY + Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189 Query: 549 KETQLPRIQ 575 KE+QLPRIQ Sbjct: 190 KESQLPRIQ 198 [146][TOP] >UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum bicolor RepID=C5Y4H1_SORBI Length = 263 Score = 100 bits (248), Expect = 1e-19 Identities = 58/163 (35%), Positives = 89/163 (54%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+ R+T ++ML+DR Y V + EL T EF+ + + + E L + T PS Sbjct: 65 ESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPELERLAFSTTLASDPSS 124 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 ++ V F V + ++ + EN+ R IL+ Q + AR + EI + ++ F Sbjct: 125 KVKVVFCPPEPVKIAAIRVVYTGVKDENLSRLILILQGRIMSKAREAIKEI-FPYKVDTF 183 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 Q ELLVNI +H L P+HQVL EK LL+ Y V ++QLPR+ Sbjct: 184 QITELLVNITKHALKPKHQVLTAEEKAKLLKEYNVVDSQLPRM 226 [147][TOP] >UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D205_NEOFI Length = 234 Score = 100 bits (248), Expect = 1e-19 Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 22/189 (11%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINK----- 239 ++ E+T+L+R +TV +ML DR Y V + E+ + EF+ KY + + D K Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARP 70 Query: 240 --------TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILV 368 T P++ IYV F + VG K ++ + + ++ N + + Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFI 130 Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 QT ++P A +S I + E FQE +LLVNI H LVP+H +L+ EKK LL+RY + Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189 Query: 549 KETQLPRIQ 575 KE+QLPRIQ Sbjct: 190 KESQLPRIQ 198 [148][TOP] >UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE Length = 239 Score = 99.4 bits (246), Expect = 2e-19 Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 25/192 (13%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224 + E+T+L+R KTV +ML DR Y V + E+ ++ ++F+ KY + + D Sbjct: 13 ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72 Query: 225 ------LVINKTKKDKPSDQ--------IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRA 359 ++ T P+ IYV F +A+ VG K ++ + + ++ +N Sbjct: 73 ARPSQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG 132 Query: 360 ILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539 I + Q+ ++P A ++ I +F E F E ELLVNI H LVP+H +L+ EKK LL R Sbjct: 133 IFITQSPISPSAVRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHR 191 Query: 540 YTVKETQLPRIQ 575 Y +KE+QLPRIQ Sbjct: 192 YRLKESQLPRIQ 203 [149][TOP] >UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=Q2HW77_MEDTR Length = 224 Score = 99.0 bits (245), Expect = 2e-19 Identities = 56/167 (33%), Positives = 95/167 (56%), Gaps = 1/167 (0%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 S E + + RKT+M ML DR Y V + +L ++ EF+ ++GE K L ++ + + Sbjct: 23 SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 PS ++ V FP + + +++ + E + R ILV Q+ +T +AR + F Sbjct: 83 PSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELENCP--FK 140 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 +E+ Q +LLVN+ +HVL P+++VL EK+ LL +Y V+E QLP + Sbjct: 141 VEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKYKVEEKQLPHM 187 [150][TOP] >UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7ECH0_SCLS1 Length = 242 Score = 98.6 bits (244), Expect = 3e-19 Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 24/190 (12%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN---MKREDLVINKTKK 248 + E KL+R +TV +M++DR YL+ + E+NM+ FK K+ N + R + + T Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFSATPS 75 Query: 249 DK--------PSDQ-----------IYVFF--PEEAKVGVKTMKTYTNRMNSENVFRAIL 365 + P+ Q I+V F + +G+K M+T+ ++ N IL Sbjct: 76 EAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135 Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 + + A+ + +AS +E F E +LLVNI H LVP+H +L+ E+ LL RY Sbjct: 136 IAPVPPSGPAQKIIPAVASDTRIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYR 195 Query: 546 VKETQLPRIQ 575 +K+TQLPRIQ Sbjct: 196 LKDTQLPRIQ 205 [151][TOP] >UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6SPK6_BOTFB Length = 242 Score = 98.6 bits (244), Expect = 3e-19 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 24/190 (12%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN-------------MKR 218 + E KL+R +TV +M++DR YL+ + E+NM+ FK K+ N Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFSATPS 75 Query: 219 EDLVI-----------NKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365 E ++ N T + + I + +G+K M+T+ ++ N IL Sbjct: 76 EAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135 Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 + + + A+ + +AS+ +E F E +LLVNI H LVP+H +L+ E+ LL RY Sbjct: 136 IAPVAPSGPAQKIIPAVASETRIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYR 195 Query: 546 VKETQLPRIQ 575 +K+TQLPRIQ Sbjct: 196 LKDTQLPRIQ 205 [152][TOP] >UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays RepID=B6TJI5_MAIZE Length = 264 Score = 97.8 bits (242), Expect = 5e-19 Identities = 57/163 (34%), Positives = 88/163 (53%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+ R+T ++ML+DR Y V + EL T EF+ + + E L + T PS Sbjct: 66 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLASDPSS 125 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 ++ V F V + ++ + EN+ R IL+ Q + R + EI +F ++ F Sbjct: 126 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 184 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 Q ELLVNI +HVL P+H+VL K LL+ Y V ++QLPR+ Sbjct: 185 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRM 227 [153][TOP] >UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FYH9_MAIZE Length = 248 Score = 97.8 bits (242), Expect = 5e-19 Identities = 57/163 (34%), Positives = 88/163 (53%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+ R+T ++ML+DR Y V + EL T EF+ + + E L + T PS Sbjct: 50 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 109 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 ++ V F V + ++ + EN+ R IL+ Q + R + EI +F ++ F Sbjct: 110 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 168 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 Q ELLVNI +HVL P+H+VL K LL+ Y V ++QLPR+ Sbjct: 169 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNVVDSQLPRM 211 [154][TOP] >UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7QJL2_VITVI Length = 229 Score = 97.4 bits (241), Expect = 7e-19 Identities = 56/164 (34%), Positives = 95/164 (57%), Gaps = 1/164 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E + Y R+T+++ML+DR Y + +++++ +F+ Y + + L I+ + PS Sbjct: 31 ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 90 Query: 264 QIYVFFPEEAKVGVKTMKTY-TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 +I V F V V +++ T +N +++ + ILV Q +T A V + F +E Sbjct: 91 KILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQVEK 148 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 FQ +LLVNI +HVL P+H+VL D EK LL++Y++ E QLPR+ Sbjct: 149 FQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSLNEKQLPRM 192 [155][TOP] >UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA Length = 223 Score = 97.1 bits (240), Expect = 9e-19 Identities = 57/159 (35%), Positives = 93/159 (58%), Gaps = 1/159 (0%) Frame = +3 Query: 99 YRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQIYVF 278 Y R+T M+ML+DR Y + + ++N+T EF+ YG+ + L I+ S +I V Sbjct: 29 YLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRISAQHCSDSSKKIAVV 88 Query: 279 FPEEAKVGVKTMKTYT-NRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAE 455 F V V ++ + + EN+ ILV Q+ +T A V + F +E+FQ E Sbjct: 89 FCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFS--FKVELFQLTE 146 Query: 456 LLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 LLVNI +HVL P+H VLN+ EK++L ++++++E QLP++ Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSIQEQQLPKL 185 [156][TOP] >UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QBA7_PENMQ Length = 236 Score = 96.7 bits (239), Expect = 1e-18 Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 23/190 (12%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM---KREDLVIN--- 236 + E+ +L+R +TV +ML+DR Y + + EL + +F +K+ ++ RE + I Sbjct: 12 ARNEMARLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIP 71 Query: 237 ----KTK----KDKPSD--------QIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAIL 365 K K K +P+D QI+V F E+ VG K ++ + + ++ N I Sbjct: 72 SEAMKAKYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIF 131 Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 + +T+++P A ++ E FQE++LLVNI H LVP+H +L+ EK LLERY Sbjct: 132 ITRTAISPSAVRLLNSAIGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190 Query: 546 VKETQLPRIQ 575 +KE+QLPRIQ Sbjct: 191 LKESQLPRIQ 200 [157][TOP] >UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8M3B9_TALSN Length = 236 Score = 95.9 bits (237), Expect = 2e-18 Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 23/190 (12%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG----------------- 203 + E+ +L+R +TV +ML+DR Y + + E+ + +F +K+G Sbjct: 12 ARNEMARLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMP 71 Query: 204 -ENMKREDLVINKTKKDKPS----DQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAIL 365 E MK + + K D IYV F E+ VG K ++ + + ++ N I Sbjct: 72 SEAMKAKYTPLKKRVSDPDPVPDCGPIYVQFCEDTTGVGAKQVRAFNHLVDEGNYHSGIF 131 Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 + +T+++P A +S E FQE++LLVNI H LVP+H +L+ EK LLERY Sbjct: 132 ITRTAISPSAMRLLSSAVGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190 Query: 546 VKETQLPRIQ 575 +KE+QLPRIQ Sbjct: 191 LKESQLPRIQ 200 [158][TOP] >UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXN9_SOYBN Length = 237 Score = 95.5 bits (236), Expect = 3e-18 Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 1/164 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E + Y R+T ++MLKDR Y + E++++ +F+D +G+ + L ++ T S Sbjct: 39 ESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLSLTHATNSSK 98 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 +I V F V V ++ ++ N + + IL+ + +T A V+ + F +E+ Sbjct: 99 RILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFS--FKVEI 156 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 FQ +LLVNI +HVL P+HQVL D +K LL++Y ++E QLPR+ Sbjct: 157 FQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNIEEKQLPRM 200 [159][TOP] >UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans RepID=Q59PF3_CANAL Length = 179 Score = 95.1 bits (235), Expect = 3e-18 Identities = 56/144 (38%), Positives = 83/144 (57%), Gaps = 9/144 (6%) Frame = +3 Query: 171 MTKHEFKDKYGENM---KREDLVINKT------KKDKPSDQIYVFFPEEAKVGVKTMKTY 323 MT EF+ K ++M +R+ + T +K + ++V F +EA VG+KTM+ + Sbjct: 1 MTLEEFRSKICDSMGTPQRKQMCFQATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNF 60 Query: 324 TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQV 503 + +N I + Q S+TP A + + S +E+FQE +L+VNI H LVP+H Sbjct: 61 CIHITEKNFSTGIFIYQNSMTPSANKLIPTV-SPATIEIFQENDLIVNITHHELVPKHLK 119 Query: 504 LNDTEKKTLLERYTVKETQLPRIQ 575 LN EKK LL RY +KE+QLPRIQ Sbjct: 120 LNREEKKELLTRYRLKESQLPRIQ 143 [160][TOP] >UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001985D3D Length = 1260 Score = 94.4 bits (233), Expect = 6e-18 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 4/180 (2%) Frame = +3 Query: 48 HTNGVTMVFSEE----EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK 215 H NG + E E + Y R+T+ QML DR Y V EL + +F+ +G N Sbjct: 8 HGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPD 67 Query: 216 REDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA 395 L I PS +I V F ++ ++ ++N E + R ILV Q+ + A Sbjct: 68 PSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHA 127 Query: 396 RTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 R V E K +E FQ ELL+NI +HV VP+H++L+ EK+ L+ +Y +++ Q P +Q Sbjct: 128 RKVVDEYPIK--VEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQ 185 [161][TOP] >UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI Length = 221 Score = 94.4 bits (233), Expect = 6e-18 Identities = 60/180 (33%), Positives = 92/180 (51%), Gaps = 4/180 (2%) Frame = +3 Query: 48 HTNGVTMVFSEE----EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK 215 H NG + E E + Y R+T+ QML DR Y V EL + +F+ +G N Sbjct: 8 HGNGSCITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPD 67 Query: 216 REDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA 395 L I PS +I V F ++ ++ ++N E + R ILV Q+ + A Sbjct: 68 PSRLRICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHA 127 Query: 396 RTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 R V E K +E FQ ELL+NI +HV VP+H++L+ EK+ L+ +Y +++ Q P +Q Sbjct: 128 RKVVDEYPIK--VEFFQITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQFPIMQ 185 [162][TOP] >UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1 Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA Length = 202 Score = 93.2 bits (230), Expect = 1e-17 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 2/168 (1%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDK 254 S E+ + +RI T+ QM++DR Y V L ++ +F Y N +N+ + Sbjct: 2 SSEKESMYFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHN----LNECYSNM 57 Query: 255 PSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTS-LTPFARTCVSEIASKFH 431 ++I FF ++ KT++T M+ V RAI++ LTP A + + S Sbjct: 58 EGERILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGK 117 Query: 432 -LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 +E F E+++NI EH LVP+H+VL + EK+ +L+RY V ETQLPRI Sbjct: 118 TIEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNVTETQLPRI 165 [163][TOP] >UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9RGC5_RICCO Length = 239 Score = 92.4 bits (228), Expect = 2e-17 Identities = 55/164 (33%), Positives = 95/164 (57%), Gaps = 1/164 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E + Y RKTVM+ML+DR Y V D EL + EF ++G+N L I+ + P Sbjct: 41 ESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLRISASLHSHPDK 100 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRM-NSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 ++ V F ++ + ++ ++ N E++ IL+ Q+ + +AR + + SK +E+ Sbjct: 101 KMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSK--VEI 158 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 F ++LLVNI +HVL P H+VL +K+ LL +++ ++ QLPR+ Sbjct: 159 FHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFSSEDKQLPRM 202 [164][TOP] >UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN Length = 219 Score = 92.4 bits (228), Expect = 2e-17 Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 6/175 (3%) Frame = +3 Query: 69 VFSEEEITKLYRIRKTVMQMLKDRN--YLVGDFELNMTKHEFKDKYGENMKREDLVINKT 242 V ++ E+T+L+R +TV +ML+DR + + K + + + E M+ + + K Sbjct: 10 VDADREMTRLWRTWRTVFEMLQDRPSPQRILLTLASRAKMKIQARPTEAMQVKYTPLTKQ 69 Query: 243 -KKDKPSD--QIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410 + P+D IYV F P+ + VG K ++ + + ++ N I + QT ++P A +S Sbjct: 70 GQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVRLLS 129 Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 + + E FQE +LLVNI H LVP+H +L+ EKK LL+RY +KE+QLPRIQ Sbjct: 130 GVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRLKESQLPRIQ 183 [165][TOP] >UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum canis CBS 113480 RepID=C5FC74_NANOT Length = 236 Score = 92.0 bits (227), Expect = 3e-17 Identities = 61/189 (32%), Positives = 101/189 (53%), Gaps = 22/189 (11%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKRED---------- 224 ++ E+ +L+R +TV ++L DR Y V + E+ ++ EF+ +Y + + D Sbjct: 13 ADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRISARP 72 Query: 225 --------LVINKTKKDKPSDQ---IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILV 368 + T K + + I+V F E + VG K ++ + ++ +N I + Sbjct: 73 SQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132 Query: 369 CQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 Q+ ++P A ++ I +F E F E ELLVNI H LVP+H +L+ EKK LL+RY + Sbjct: 133 TQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRYRL 191 Query: 549 KETQLPRIQ 575 KE+QLPRIQ Sbjct: 192 KESQLPRIQ 200 [166][TOP] >UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR Length = 233 Score = 91.3 bits (225), Expect = 5e-17 Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 1/164 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E + Y R+TV++MLKDR Y V D ELN + EF+ +G + + L + + + P Sbjct: 35 ESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHK 94 Query: 264 QIYVFFPEEAKVGVKTMKT-YTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 + V F ++ ++T Y +N E++ IL+ Q+ + FA+ + + F +EV Sbjct: 95 KTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFP--FKVEV 152 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 FQ +LLVNI +HVL P+ +L +K+ ++ +Y +++ QLPR+ Sbjct: 153 FQITDLLVNITKHVLQPQMDILTAEQKQQVMNKYKLEDKQLPRM 196 [167][TOP] >UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VUN9_PYRTR Length = 235 Score = 90.9 bits (224), Expect = 6e-17 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 26/189 (13%) Frame = +3 Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGEN------------------- 209 + +L+R+ KT +M+ DR Y+V + ++NM+ +F KY Sbjct: 11 LMRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYAREDGEPDRSRLNFSCQPSEEM 70 Query: 210 -MKREDLVINKTKKDKPS-DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSL 383 K D K P+ I+V F + VG+K ++ Y + + + I++ + Sbjct: 71 LAKYTDAPTKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKPM 130 Query: 384 TPFARTCVSEIAS-----KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTV 548 T A + S K +EVF E +LLVNI +H LVP+H +L+D EK+ LL+RY + Sbjct: 131 TGMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQRYRL 190 Query: 549 KETQLPRIQ 575 K+TQLPRIQ Sbjct: 191 KQTQLPRIQ 199 [168][TOP] >UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina RepID=B2AZ24_PODAN Length = 235 Score = 90.9 bits (224), Expect = 6e-17 Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 22/187 (11%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY--GENMKREDLV------- 230 ++E+++L+R +T+ +M+ DR Y + + E+ M EFK K+ G+ ++ Sbjct: 12 DKEVSRLWRAWRTIHEMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSARPS 71 Query: 231 INKTKKDKPSDQ------------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVC 371 + KK P I+V F PE+ +G+ MK + + + ILV Sbjct: 72 ASMIKKFTPPPTASNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAGILVT 131 Query: 372 QTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVK 551 +L+ AR ++ + +E F E +LLVNI H LVP H +L+ EK LL+RY +K Sbjct: 132 AVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKRYRLK 191 Query: 552 ETQLPRI 572 ETQLPRI Sbjct: 192 ETQLPRI 198 [169][TOP] >UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL Length = 179 Score = 90.5 bits (223), Expect = 8e-17 Identities = 55/144 (38%), Positives = 82/144 (56%), Gaps = 9/144 (6%) Frame = +3 Query: 171 MTKHEFKDKYGENM---KREDLVINKTKKDKPSDQ------IYVFFPEEAKVGVKTMKTY 323 MT EF+ K ++M +R+ + T + D+ ++V F +E VG+KTM+ + Sbjct: 1 MTLEEFRAKVCDSMGYPQRKLMCFQATPTAEQLDKFPEMGSLWVEFCDEPSVGIKTMRNF 60 Query: 324 TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQV 503 ++ +N I + Q S+TP A + + +E FQE +L+VNI H LVP+H Sbjct: 61 CIHISEKNFQVGIFIYQNSITPSANKLIPTVQPA-SIETFQETDLIVNITHHELVPKHIK 119 Query: 504 LNDTEKKTLLERYTVKETQLPRIQ 575 LN EKK LLERY +KE+QLPRIQ Sbjct: 120 LNREEKKELLERYRLKESQLPRIQ 143 [170][TOP] >UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4QW70_MAGGR Length = 259 Score = 90.5 bits (223), Expect = 8e-17 Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 22/183 (12%) Frame = +3 Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE---NMKREDLVINKTKKDK--- 254 KL+R +T+ QML DR Y + + E N++ F + + N+ + L + D Sbjct: 12 KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLK 71 Query: 255 -------PSD--------QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTP 389 P+D I+V F E K+GV K + + ILV Q +L+ Sbjct: 72 LHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSS 131 Query: 390 FARTCVSEIASKFH-LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLP 566 AR +S S + +E F +LLVNI H LVP+H +L+ EKK LLERY +KETQLP Sbjct: 132 GARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRLKETQLP 191 Query: 567 RIQ 575 RIQ Sbjct: 192 RIQ 194 [171][TOP] >UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z7I7_NECH7 Length = 234 Score = 90.1 bits (222), Expect = 1e-16 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 25/189 (13%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK----- 245 +E+ +L+R +TV +M+ DR Y + + E+ ++ F+D+Y D IN+ K Sbjct: 13 KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCN----PDGSINRAKLQFSA 68 Query: 246 ---------------KDKPSD-----QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365 DKP I+V F + GV ++ + + + + I+ Sbjct: 69 RPSESMLRKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTGIM 128 Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 V L+P AR ++ + S +E F E +LLVNI H LVP+H +L+ EK LL+RY Sbjct: 129 VTHVPLSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYR 188 Query: 546 VKETQLPRI 572 +KETQLPRI Sbjct: 189 LKETQLPRI 197 [172][TOP] >UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR Length = 234 Score = 89.7 bits (221), Expect = 1e-16 Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 23/189 (12%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE------------NMKR 218 + +E+++L+R +TV +M++DR Y + + E+ ++ FK +Y + + Sbjct: 10 ASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEYTNEDGTPNRAKLQFSARP 69 Query: 219 EDLVINK-TKKDKPSDQ--------IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRA-IL 365 + +I K T PS+ I+V F E+ +GV MK + S+N F+A I Sbjct: 70 SEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHC-SDNKFKAGIF 128 Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 + L+ AR +S + +E F E +LLVNI H LVP+H +L+ EK LL+RY Sbjct: 129 ITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLKRYR 188 Query: 546 VKETQLPRI 572 +KETQLPRI Sbjct: 189 LKETQLPRI 197 [173][TOP] >UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023E584 Length = 253 Score = 89.4 bits (220), Expect = 2e-16 Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 25/189 (13%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-------NMKREDLVINK 239 +E+ +L+R +TV +M+ DR Y + + E+ ++ F+D+Y N R L + Sbjct: 13 KEVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSININYSRNKLSFSA 72 Query: 240 ----------------TKKDKPSD--QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAIL 365 D +D I++ F + GV ++ + + + S N I+ Sbjct: 73 RPSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNNYKTGIM 132 Query: 366 VCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 + L+P AR ++ + S +E F E +LLVNI H LVP+H +L+ EK LL+RY Sbjct: 133 ITHVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRYR 192 Query: 546 VKETQLPRI 572 +KETQLPRI Sbjct: 193 LKETQLPRI 201 [174][TOP] >UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M1H8_ARATH Length = 233 Score = 89.4 bits (220), Expect = 2e-16 Identities = 53/165 (32%), Positives = 90/165 (54%), Gaps = 1/165 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E + Y R T +ML+DR Y V + EL++T EF+ +GE + E L I + P Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94 Query: 264 QIYVFFPEEAKVGVKTMKT-YTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 +I V F + VK+++ + N+ + ILV Q+ + FA+ ++ F +E Sbjct: 95 KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTF--PFTVET 152 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 F +LLVNI +H+ P+ ++LN EK+ LL ++ +++ QLP +Q Sbjct: 153 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQ 197 [175][TOP] >UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0UZB4_PHANO Length = 277 Score = 89.0 bits (219), Expect = 2e-16 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 26/192 (13%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-------------NMKR 218 + + +++R+ +T +M+ +R Y V D E+ M+ F DKY + Sbjct: 50 QPSLIRMWRVWRTAKEMMYERGYNVLDEEMTMSLEAFADKYAREDGEPDRSRLNFSSTPS 109 Query: 219 EDLVINKTK---KDKPSD-----QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ 374 E+++I T K +P+ I+ F + VG+K ++ + N + S + + I+V Sbjct: 110 EEMLIKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGLKQLRDFMNHLGSGSFYSGIMVTV 169 Query: 375 TSLTPFARTCVSEIAS-----KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLER 539 +T A + ++ K +EVF E +LLVNI +H LVP+H +L+ EK LL R Sbjct: 170 KPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLTR 229 Query: 540 YTVKETQLPRIQ 575 Y +KETQLPRIQ Sbjct: 230 YRLKETQLPRIQ 241 [176][TOP] >UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia guilliermondii RepID=A5DHL4_PICGU Length = 179 Score = 88.6 bits (218), Expect = 3e-16 Identities = 47/103 (45%), Positives = 67/103 (65%) Frame = +3 Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446 ++V F +EA VG+KTM+ + ++ +N I + Q S+TP A V +A +E FQ Sbjct: 42 LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLVPTVAPA-SIETFQ 100 Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 E++L+VNI H LVP+H L+ EKK LL RY +KE+QLPRIQ Sbjct: 101 ESDLIVNITHHDLVPKHIKLSIGEKKELLARYRLKESQLPRIQ 143 [177][TOP] >UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RKX0_PLAYO Length = 112 Score = 88.2 bits (217), Expect = 4e-16 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 2/90 (2%) Frame = +3 Query: 312 MKTY--TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVL 485 MK Y T +M+ +++ RAILV Q +LTPFA+ + E A + +E F + ELLVNI +H L Sbjct: 1 MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHEL 60 Query: 486 VPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 VP+H L EK+ LL+RY +KE +LPRIQ Sbjct: 61 VPKHIPLTSDEKRNLLQRYKIKENKLPRIQ 90 [178][TOP] >UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi RepID=Q4XTK3_PLACH Length = 126 Score = 88.2 bits (217), Expect = 4e-16 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 2/90 (2%) Frame = +3 Query: 312 MKTY--TNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVL 485 MK Y T +M+ +++ RAILV Q +LTPFA+ + E A + +E F + ELLVNI +H L Sbjct: 1 MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHEL 60 Query: 486 VPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 VP+H L EK+ LL+RY +KE +LPRIQ Sbjct: 61 VPKHIPLTSDEKRNLLQRYKIKENKLPRIQ 90 [179][TOP] >UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus RepID=Q6MY78_ASPFU Length = 220 Score = 88.2 bits (217), Expect = 4e-16 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 8/175 (4%) Frame = +3 Query: 75 SEEEITKLYRIRKTVMQMLKDR------NYLVGDFELNMTKHEFKDKYGENMKREDLVIN 236 ++ E+T+L+R +TV +ML DR + + + K + K L Sbjct: 11 ADREMTRLWRTWRTVFEMLADRPRSTRLTHFLQPYSRTKMKISARPTAAMQAKYTPLPTP 70 Query: 237 KTKKDKPS-DQIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVS 410 +P IYV F + VG K ++ + + ++ N + + QT ++P A +S Sbjct: 71 ANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLS 130 Query: 411 EIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 I + E FQE +LLVNI H LVP+H +L+ EKK LL+RY +KE+QLPRIQ Sbjct: 131 GIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQ 184 [180][TOP] >UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H038_CHAGB Length = 220 Score = 85.9 bits (211), Expect = 2e-15 Identities = 58/172 (33%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Frame = +3 Query: 81 EEITKL-YRIRKTVMQMLKDR---NYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKK 248 +E+T+L Y + + +++ DR Y D N +K +F + E+M ++ Sbjct: 12 KEVTRLDYELAEDEVKISLDRFRLEYTNDDGSPNRSKMQFSARPSESMIKKFTPPPTPSN 71 Query: 249 DKPSDQ---IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEI 416 P+ + I+V F PE+A +G+ MK + + N ILV +L+ AR ++ Sbjct: 72 PDPAPECGTIWVEFCPEKASIGINVMKKFVEHCGTNNFKAGILVTAVALSAQARKVMTVT 131 Query: 417 ASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 + +E F E +LLVNI H LVP+H +L+ EK LL+RY +KETQLPRI Sbjct: 132 SQYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKRYRLKETQLPRI 183 [181][TOP] >UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S900_9PEZI Length = 231 Score = 83.2 bits (204), Expect = 1e-14 Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 22/187 (11%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKY---GENMKREDLVIN----- 236 +E+ + +R +TV +M DR Y + + E+ ++ F+ +Y ++ R L + Sbjct: 9 KEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSARPSS 68 Query: 237 -------------KTKKDKPSDQIYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQ 374 D IY+ F E+ +GV+ ++ + + + I+V Sbjct: 69 DMLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAGIMVTS 128 Query: 375 TSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKE 554 + LT R + + S +E F E +LLVNI H LVP+H +L+ EK LL+RY +KE Sbjct: 129 SPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKRYRLKE 188 Query: 555 TQLPRIQ 575 TQLPRI+ Sbjct: 189 TQLPRIK 195 [182][TOP] >UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0S407_PARBP Length = 171 Score = 82.8 bits (203), Expect = 2e-14 Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Frame = +3 Query: 267 IYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 IYV F + + VG K ++ + + ++ +N I + QT ++P A ++ I +F E F Sbjct: 33 IYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRF-CEHF 91 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 QE ELLVNI H LVP+H +L+ EKK LL+RY +KE+QLPRIQ Sbjct: 92 QEQELLVNITHHELVPKHILLSAEEKKRLLQRYRLKESQLPRIQ 135 [183][TOP] >UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide E, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925DCF Length = 187 Score = 81.6 bits (200), Expect = 4e-14 Identities = 59/162 (36%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Frame = +3 Query: 99 YRIRKTVMQ--MLKDRNYLVG-DFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQI 269 Y + K V++ + KD + + D E N+ K ++ + K D +I D Q+ Sbjct: 2 YVLYKLVLEWNIAKDIEWNIAKDIEWNIAKDI---EWNIDKKNHDKLIKLF--DSTKYQM 56 Query: 270 YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQE 449 +VFFPEE KVG+KT+K Y RM E + RAI+V QT +TP A+ Sbjct: 57 FVFFPEEEKVGIKTIKQYCTRMQEEGINRAIIVVQTGMTPSAKQ---------------- 100 Query: 450 AELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 LVPEH VL+ EK LL RY +K+ QLPRIQ Sbjct: 101 -----------LVPEHVVLSPEEKAELLTRYKLKDHQLPRIQ 131 [184][TOP] >UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE Length = 176 Score = 80.9 bits (198), Expect = 7e-14 Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 5/166 (3%) Frame = +3 Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYG-----ENMKREDLVINKTKKDKP 257 +L+R+R T+ Q+ +DR Y V +L +T+ F +++G E +R DL + P Sbjct: 13 RLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSDLDFVVQRASDP 72 Query: 258 SDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLE 437 +DQ+ V+F + KVG+ ++ + Sbjct: 73 TDQLGVYFANDPKVGIAVVRDF-------------------------------------- 94 Query: 438 VFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 F+E EL+VN+ +H LVP+H + EK LLERY +KE QLPRI+ Sbjct: 95 -FEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKLKEQQLPRIK 139 [185][TOP] >UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens RepID=B4DJ89_HUMAN Length = 117 Score = 80.9 bits (198), Expect = 7e-14 Identities = 40/81 (49%), Positives = 54/81 (66%) Frame = +3 Query: 333 MNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLND 512 M EN+ RA++V Q +TP A+ + ++A K+ LE F + ELL+NI EH LVPEH V+ Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60 Query: 513 TEKKTLLERYTVKETQLPRIQ 575 E LL RY ++E QLPRIQ Sbjct: 61 EEVTELLARYKLRENQLPRIQ 81 [186][TOP] >UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi RepID=Q8T1Q5_TRYCR Length = 219 Score = 80.5 bits (197), Expect = 9e-14 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 11/171 (6%) Frame = +3 Query: 93 KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSDQI- 269 K++R+ +TV +M+ DR Y V D + + EFKD Y + RE VI + + P ++I Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREG-VIYRDRMTVPCERIG 73 Query: 270 -------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK- 425 VFF E + ++TMK Y + + N R I+V Q + + V +I Sbjct: 74 VSQRSRAMVFFSEG--LSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSS 131 Query: 426 --FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 +++F E +L+VNI H LVP+H L D E K +L+ + ++ + LPRI Sbjct: 132 LGLKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHALELSALPRI 182 [187][TOP] >UniRef100_B5LZ31 RNA polymerase II (Fragment) n=1 Tax=Psetta maxima RepID=B5LZ31_PSEMX Length = 87 Score = 80.1 bits (196), Expect = 1e-13 Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 5/84 (5%) Frame = +3 Query: 162 ELNMTKHEFKDKYGENM-----KREDLVINKTKKDKPSDQIYVFFPEEAKVGVKTMKTYT 326 EL+ T EFK ++G+ +R DL + D P+DQ++VFFPEE KVG+KT+K Y Sbjct: 3 ELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYC 62 Query: 327 NRMNSENVFRAILVCQTSLTPFAR 398 RM EN+ RAI+V Q +TP A+ Sbjct: 63 QRMQEENITRAIIVVQMGMTPSAK 86 [188][TOP] >UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus RepID=B0XMP1_ASPFC Length = 171 Score = 79.7 bits (195), Expect = 1e-13 Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 1/104 (0%) Frame = +3 Query: 267 IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 IYV F + VG K ++ + + ++ N + + QT ++P A +S I + E F Sbjct: 33 IYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRI-CEHF 91 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 QE +LLVNI H LVP+H +L+ EKK LL+RY +KE+QLPRIQ Sbjct: 92 QEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRLKESQLPRIQ 135 [189][TOP] >UniRef100_B8N6W2 RNA polymerase subunit n=1 Tax=Aspergillus flavus NRRL3357 RepID=B8N6W2_ASPFN Length = 171 Score = 78.6 bits (192), Expect = 3e-13 Identities = 43/104 (41%), Positives = 63/104 (60%), Gaps = 1/104 (0%) Frame = +3 Query: 267 IYV-FFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 IYV F P+ VG K ++ + + ++ N + + QT ++P A +S + + E F Sbjct: 33 IYVEFCPDSTGVGTKQVRAFNHVVDENNFHTGVFITQTPISPSAVRLLSGVPGRI-CEHF 91 Query: 444 QEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 QE +LLVNI H LVP+H +L+ EK LL RY +KE+QLPRIQ Sbjct: 92 QEQDLLVNITRHELVPKHVLLSPEEKAKLLARYRLKESQLPRIQ 135 [190][TOP] >UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays RepID=B6SJT2_MAIZE Length = 154 Score = 77.8 bits (190), Expect = 6e-13 Identities = 48/141 (34%), Positives = 72/141 (51%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKDKPSD 263 E +L+ R+T ++ML DR Y V + EL T EF+ + E L T PS Sbjct: 9 ESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSDPSS 68 Query: 264 QIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVF 443 ++ V F V + ++ + EN+ R IL+ Q + R + EI +F ++ F Sbjct: 69 KVKVVFCPPGPVKIAAIRLIYTEVKDENLARLILILQGKIMSPTRESIKEI-FRFKVDTF 127 Query: 444 QEAELLVNIKEHVLVPEHQVL 506 Q ELLVNI +HVL P+H+VL Sbjct: 128 QITELLVNITKHVLKPKHEVL 148 [191][TOP] >UniRef100_B4GWF6 GL16452 n=1 Tax=Drosophila persimilis RepID=B4GWF6_DROPE Length = 126 Score = 77.0 bits (188), Expect = 9e-13 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 5/91 (5%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-----REDLVINKT 242 E EI KL+ IRKTV +M DR YLV EL+ T +F + +G+ R DL + T Sbjct: 8 EAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMVLT 67 Query: 243 KKDKPSDQIYVFFPEEAKVGVKTMKTYTNRM 335 D P +++ VFFPEE KV V+T+K + NRM Sbjct: 68 HADDPKNRMLVFFPEEPKVAVRTIKAFANRM 98 [192][TOP] >UniRef100_UPI0000163400 DNA binding / DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana RepID=UPI0000163400 Length = 87 Score = 76.3 bits (186), Expect = 2e-12 Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 3/79 (3%) Frame = +3 Query: 312 MKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK---FHLEVFQEAELLVNIKEHV 482 MK Y +++ S NVFRAILV Q + F+R + + + FH+EVFQE EL+VN+KEHV Sbjct: 1 MKKYIDQLKSANVFRAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHV 59 Query: 483 LVPEHQVLNDTEKKTLLER 539 VPEHQ L EK+ LER Sbjct: 60 FVPEHQALTTEEKQKFLER 78 [193][TOP] >UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QBA8_PENMQ Length = 172 Score = 75.9 bits (185), Expect = 2e-12 Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 9/119 (7%) Frame = +3 Query: 246 KDKPSD--------QIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTPFAR 398 K +P+D QI+V F E+ VG K ++ + + ++ N I + +T+++P A Sbjct: 19 KKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITRTAISPSAV 78 Query: 399 TCVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 ++ E FQE++LLVNI H LVP+H +L+ EK LLERY +KE+QLPRIQ Sbjct: 79 RLLNSAIGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRLKESQLPRIQ 136 [194][TOP] >UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1 Tax=Trypanosoma brucei RepID=Q388R5_9TRYP Length = 219 Score = 73.9 bits (180), Expect = 8e-12 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%) Frame = +3 Query: 78 EEEIT--KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKD 251 +EE+ +++R+ +TV +M++DR Y V + T +F ++Y + RE I + + Sbjct: 10 QEELVYDRMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGRRIYRERMT 66 Query: 252 KPSDQI--------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFART-- 401 P +++ VFF E +G++ MK Y N R I+V + + Sbjct: 67 VPCERVGGTHRSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYV 124 Query: 402 -CVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 C++ + +++F E +L+VNI H LVP+H L D E K +LE ++++ LPRI Sbjct: 125 DCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRI 182 [195][TOP] >UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2 Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG Length = 219 Score = 73.9 bits (180), Expect = 8e-12 Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 13/178 (7%) Frame = +3 Query: 78 EEEIT--KLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTKKD 251 +EE+ +++R+ +TV +M++DR Y V + T +F ++Y + RE I + + Sbjct: 10 QEELVYDRMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGKRIYRERMT 66 Query: 252 KPSDQI--------YVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFART-- 401 P +++ VFF E +G++ MK Y N R I+V + + Sbjct: 67 VPCERVGGTHRSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYV 124 Query: 402 -CVSEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 C++ + +++F E +L+VNI H LVP+H L D E K +LE ++++ LPRI Sbjct: 125 DCINRSGTGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSLELNMLPRI 182 [196][TOP] >UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE Length = 224 Score = 73.6 bits (179), Expect = 1e-11 Identities = 53/181 (29%), Positives = 95/181 (52%), Gaps = 19/181 (10%) Frame = +3 Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELN---MTKHE----FKDKYGENMKREDLVINKTK 245 I K Y++ +T+ M++ R Y FE N + + E F+ KY ++ + +V K K Sbjct: 14 IKKKYKVFQTLASMIRQRGY----FEANPPILIEDEPFELFEAKYRTDVLPQRVVCFK-K 68 Query: 246 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA---------- 395 +D+ + F+ ++ + K Y + +++ V R I+V T PFA Sbjct: 69 EDETDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTD--PFATKPQVVEKKA 126 Query: 396 RTCVSEIAS--KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPR 569 R + ++ S + E+F E +L+ ++ +H LVP+H +LND EK+ LL++Y + + QLPR Sbjct: 127 RFFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKYGMVDNQLPR 186 Query: 570 I 572 I Sbjct: 187 I 187 [197][TOP] >UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VBP1_NOSCE Length = 204 Score = 72.0 bits (175), Expect = 3e-11 Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 2/166 (1%) Frame = +3 Query: 81 EEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK-KDKP 257 E+ K + R T+++M +R Y L+ D + D +N K Sbjct: 3 EKKRKFFLCRNTLVEMCTERGYTTDQKVLSY------DNFIAQFPSCDKDVNSINFVCKN 56 Query: 258 SDQIY-VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHL 434 +D + + F ++ K+G +++ S N++ ILV ++ ++ V+ S + Sbjct: 57 ADNLVGIHFIDDEKIGKSSIEKVIETYKSINIYHLILVINQKMSSASQNIVN--VSDLKI 114 Query: 435 EVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 E+F++ EL+ NI +HV VP H++LNDTEK ++LE+ + Q+P+I Sbjct: 115 EIFKDEELMFNITKHVSVPRHRILNDTEKNSILEKLKITVDQMPKI 160 [198][TOP] >UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE Length = 223 Score = 71.6 bits (174), Expect = 4e-11 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 29/189 (15%) Frame = +3 Query: 93 KLYRIRKTVMQMLKDRNY-------LVGD--FELNMTKHEFKDKYGENMKREDLVINKTK 245 K Y+I +T+ M++ R Y LV D FE+ F+ KY +N+ + + K Sbjct: 16 KKYKIFQTLASMIRQRGYFESTPAKLVEDETFEI------FESKYRDNLPEKIVCF---K 66 Query: 246 KDKPSDQIYVFF--------PEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFA-- 395 +D SD++ + F EEAK KT++ ++NR V R I++ T PFA Sbjct: 67 RDDESDKLLIIFYTKQAPLTHEEAK---KTIQDFSNRQ----VKRLIMIFPTD--PFATK 117 Query: 396 --------RTCVSEIAS--KFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYT 545 R + ++ S + E+F E +L+ ++ +H LVP+H +LND EK+ LL++Y Sbjct: 118 PQVVDKKARLFIDQVNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYG 177 Query: 546 VKETQLPRI 572 + + QLPRI Sbjct: 178 LVDNQLPRI 186 [199][TOP] >UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans RepID=Q3LW39_BIGNA Length = 204 Score = 70.1 bits (170), Expect = 1e-10 Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 7/170 (4%) Frame = +3 Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK--REDLVINKTKKDKPS 260 + K Y ++ +ML R Y V LN+ +FK K E + + +IN + + Sbjct: 6 LEKYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEKKRYFKSFKIINHL--NDTN 63 Query: 261 DQIYVFFPEEAKV-----GVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK 425 ++I F+ + + G+K K TN NS I + + L+ +S Sbjct: 64 NKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNS-----IIFITKRYLSKQTNIALSHFRRN 118 Query: 426 FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 F++E+F E E+L+N +H LVP+H +L K+ +L+ Y VK++QLP+I+ Sbjct: 119 FNIEIFFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNVKDSQLPKIK 168 [200][TOP] >UniRef100_Q4YN15 DNA-directed RNA polymerase 2, putative (Fragment) n=1 Tax=Plasmodium berghei RepID=Q4YN15_PLABE Length = 107 Score = 70.1 bits (170), Expect = 1e-10 Identities = 39/106 (36%), Positives = 65/106 (61%), Gaps = 2/106 (1%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK-REDLVINKTKKDK 254 E+ +T+ Y+ RKT +ML+DR Y++ E FK+ + EN K R + I + K+ Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61 Query: 255 PSDQIYVFFPEEAK-VGVKTMKTYTNRMNSENVFRAILVCQTSLTP 389 +++I V+F +E K GVK ++ T +M+ +++ RAILV Q +LTP Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTP 107 [201][TOP] >UniRef100_Q8CI23 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Mus musculus RepID=Q8CI23_MOUSE Length = 96 Score = 68.9 bits (167), Expect = 3e-10 Identities = 35/77 (45%), Positives = 49/77 (63%), Gaps = 5/77 (6%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGE-----NMKREDLVINKT 242 EEE +L++IRKT+MQ+ DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 243 KKDKPSDQIYVFFPEEA 293 D P+DQ++VFFP EA Sbjct: 64 HNDDPTDQMFVFFPGEA 80 [202][TOP] >UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B0H1_VITVI Length = 162 Score = 65.1 bits (157), Expect = 4e-09 Identities = 36/103 (34%), Positives = 59/103 (57%) Frame = +3 Query: 267 IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEVFQ 446 I V F ++ ++ ++N E + R ILV Q+ + AR V E K +E FQ Sbjct: 26 ILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFFQ 83 Query: 447 EAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQ 575 ELL+NI +HV VP+H++L+ EK+ L+ +Y +++ Q P +Q Sbjct: 84 ITELLINITKHVSVPKHEILSAQEKRKLVNKYKLEDKQXPIMQ 126 [203][TOP] >UniRef100_UPI0001B7AB22 UPI0001B7AB22 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7AB22 Length = 79 Score = 61.2 bits (147), Expect = 5e-08 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 7/76 (9%) Frame = +3 Query: 78 EEEITKLYRIRKTVMQ--MLKDRNYLVGDFELNMTKHEFKDKYGENM-----KREDLVIN 236 EEE +L++IRKT+MQ + DR YLV EL+ T EFK ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQATLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 63 Query: 237 KTKKDKPSDQIYVFFP 284 D P+DQ++VFFP Sbjct: 64 VAHNDDPTDQMFVFFP 79 [204][TOP] >UniRef100_Q8SRJ3 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRJ3_ENCCU Length = 212 Score = 60.1 bits (144), Expect = 1e-07 Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 1/164 (0%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENM-KREDLVINKTKKDKPS 260 E+ L R T ++M++DR Y L + F ++Y + KR L D+P Sbjct: 14 ELRALCLSRNTAIEMVRDRGYTTTQEVLALDG--FHERYPLALTKRSTLNFVCVNVDRP- 70 Query: 261 DQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFHLEV 440 + V F ++ K+G K + ++ +N+F IL+ +P + + + +F +E+ Sbjct: 71 --VAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIP-LTPRFSIEI 127 Query: 441 FQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 F EL+ N +H VP H+VL+ E++++ + LPRI Sbjct: 128 FLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKLGPGDLPRI 171 [205][TOP] >UniRef100_A4HXV2 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania infantum RepID=A4HXV2_LEIIN Length = 239 Score = 57.4 bits (137), Expect = 8e-07 Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 30/193 (15%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215 E K +RI +T +M+ DR Y V + + EF ++Y E ++ Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPSSLGEFIERYVEEVEVTEDGGAAVGGGPNDA 69 Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362 R VI + K ++ V+F + + +K +E R + Sbjct: 70 PPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRVV 129 Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533 V + P R + + E+F+E EL VNI H LVP+H L++ E +L Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHSPLSEEELTDVL 189 Query: 534 ERYTVKETQLPRI 572 + + ++ QLPRI Sbjct: 190 QAHALELNQLPRI 202 [206][TOP] >UniRef100_A4H9I9 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania braziliensis RepID=A4H9I9_LEIBR Length = 239 Score = 57.0 bits (136), Expect = 1e-06 Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 30/193 (15%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215 E K +RI +T +M+ DR Y V + + EF ++Y E ++ Sbjct: 10 EFYKCFRILQTSAEMMSDRKYKVAQHVVPNSLGEFVERYVEEVEVTESGGAAAGGGFTDA 69 Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362 R VI + K ++ V+F + + +K E R + Sbjct: 70 PPRRKQVIRRDKMTLACEREVGEGRTLKAVVYFCPPNHLSSEVVKKIAEDALHEGYQRVV 129 Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533 V + P R + + E+F+E EL VNI H LVP+H L++ E K +L Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELKDVL 189 Query: 534 ERYTVKETQLPRI 572 + ++ QLPRI Sbjct: 190 HAHALELHQLPRI 202 [207][TOP] >UniRef100_Q4QDW4 DNA-directed RNA polymerases II, putative n=1 Tax=Leishmania major RepID=Q4QDW4_LEIMA Length = 239 Score = 56.2 bits (134), Expect = 2e-06 Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 30/193 (15%) Frame = +3 Query: 84 EITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMK---------------- 215 E K +RI +T +M+ DR Y V + + EF ++Y E ++ Sbjct: 10 EFHKCFRILQTSAEMMSDRKYKVAQHVVPGSLGEFIERYVEEVEVTEDGGAAVGGGPTDA 69 Query: 216 --REDLVINKTKKDKPSDQ---------IYVFFPEEAKVGVKTMKTYTNRMNSENVFRAI 362 R VI + K ++ V+F + + +K +E R + Sbjct: 70 LPRRKQVIRRDKMTLACEREVGEGNTLKAVVYFCPPNHLSSEVVKKIAEDALNEGYQRIV 129 Query: 363 LVCQTSLTPFARTCV---SEIASKFHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLL 533 V + P R + + E+F+E EL VNI H LVP+H L++ E + +L Sbjct: 130 FVTPSKPNPIVRKTMDTYNRSEQDLRFELFEEDELSVNITHHELVPKHTPLSEEELRDVL 189 Query: 534 ERYTVKETQLPRI 572 + ++ QLPRI Sbjct: 190 HAHALELNQLPRI 202 [208][TOP] >UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH Length = 202 Score = 56.2 bits (134), Expect = 2e-06 Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 5/167 (2%) Frame = +3 Query: 87 ITKLYRIRKTVMQMLKDRNYLVGDFELNMTKH--EFKDKYGENMKREDLVINKTKKDKPS 260 + L+ R T+++ML DR Y+ FE ++ +FK+ + + N T + Sbjct: 6 VRDLWLARNTIIEMLTDRGYI---FEQSIFSQLEDFKNTFN---LEDSTSCNFTAIRNVN 59 Query: 261 DQIY---VFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASKFH 431 D++ + F K+ K ++T +++++ + IL+ L A + + S F Sbjct: 60 DKVILCAIHFTSNDKLSKKQIETIITDYSNQSISKLILISCNKLNHAALAYLDK--SNFS 117 Query: 432 LEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRI 572 +E+F ++L N +H+LVP H++++ EK TLL LP I Sbjct: 118 IELFLYKDILFNPTKHILVPHHKIMSIEEKTTLLNNLKCSLDDLPII 164